2023-09-08T17:53:29,897 Created temporary directory: /tmp/pip-build-tracker-3v2dhe3z
2023-09-08T17:53:29,898 Initialized build tracking at /tmp/pip-build-tracker-3v2dhe3z
2023-09-08T17:53:29,898 Created build tracker: /tmp/pip-build-tracker-3v2dhe3z
2023-09-08T17:53:29,899 Entered build tracker: /tmp/pip-build-tracker-3v2dhe3z
2023-09-08T17:53:29,900 Created temporary directory: /tmp/pip-wheel-vkwy80rw
2023-09-08T17:53:29,903 Created temporary directory: /tmp/pip-ephem-wheel-cache-todkjyd9
2023-09-08T17:53:29,924 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T17:53:29,928 2 location(s) to search for versions of python-libsbml:
2023-09-08T17:53:29,928 * https://pypi.org/simple/python-libsbml/
2023-09-08T17:53:29,928 * https://www.piwheels.org/simple/python-libsbml/
2023-09-08T17:53:29,929 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2023-09-08T17:53:29,930 Getting page https://pypi.org/simple/python-libsbml/
2023-09-08T17:53:29,931 Found index url https://pypi.org/simple/
2023-09-08T17:53:30,112 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2023-09-08T17:53:30,197   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2023-09-08T17:53:30,197   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2023-09-08T17:53:30,198   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2023-09-08T17:53:30,199   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2023-09-08T17:53:30,199   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2023-09-08T17:53:30,200   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,201   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2023-09-08T17:53:30,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,206   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,207   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,208   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,209   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,210   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,211   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,212   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,213   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,214   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,215   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,216   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,217   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,218   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,219   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,220   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,221   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2023-09-08T17:53:30,221   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,222   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,222   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2023-09-08T17:53:30,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,223   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,224   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,225   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,226   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,227   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,227   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,228   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,228   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,229   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,230   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,230   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,231   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,231   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,232   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,232   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,233   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,233   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,234   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,235   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,235   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,236   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,236   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,237   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,238   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,238   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2023-09-08T17:53:30,239   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,239   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,240   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,240   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,241   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,241   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,242   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,242   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,243   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,243   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,244   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,245   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,246   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,246   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,246   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,247   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,247   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,248   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,248   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,249   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,250   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,250   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,251   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,251   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2023-09-08T17:53:30,252   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,252   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,253   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,254   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,254   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,255   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,255   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,256   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,256   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,257   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,258   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,258   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,259   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,259   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,260   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,261   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,261   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,262   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,262   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,262   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,263   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,263   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2023-09-08T17:53:30,264   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,265   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,265   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,266   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,267   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,267   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,268   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,268   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,269   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,270   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,270   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,271   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,271   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,271   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,272   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,272   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,273   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,274   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,274   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,275   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,276   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,276   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,277   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,277   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,278   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,278   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,279   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,280   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,280   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,281   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,281   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,282   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,282   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,283   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,283   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,284   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,285   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,285   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,286   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,286   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,287   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2023-09-08T17:53:30,287   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,288   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,289   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,289   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,290   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,290   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,291   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,291   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,292   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,292   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,293   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,294   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,294   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,295   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,295   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,295   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,296   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,296   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,297   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,298   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,298   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,299   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,299   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,300   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,300   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,301   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,302   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,302   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,303   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,303   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,304   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,304   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2023-09-08T17:53:30,305   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,306   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,307   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,307   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,308   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,308   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,309   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,309   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,310   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,310   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,311   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,311   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,312   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,312   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,313   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,314   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,314   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,315   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,315   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,316   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,317   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,318   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,318   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,318   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,319   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,320   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,320   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,321   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,321   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,322   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,322   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,323   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,323   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,324   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,325   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,326   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,326   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,326   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,327   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,327   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,328   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,329   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,329   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,330   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,330   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,331   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,332   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,332   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,333   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,333   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,334   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,334   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,335   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,335   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,336   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,336   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,337   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,337   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,338   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,339   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,339   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,340   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,341   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,341   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,342   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,342   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,342   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,343   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,344   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,344   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,345   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,345   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,346   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,346   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,347   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,348   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,348   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,349   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,349   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,350   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,351   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,352   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,353   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,354   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,355   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,356   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,357   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,358   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,359   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,360   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,361   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,362   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,363   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,364   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,365   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,366   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,367   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,368   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,369   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,370   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,371   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,372   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,373   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,374   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,375   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,376   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,377   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,378   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,379   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,380   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,381   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,382   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,383   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,384   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,385   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,386   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,387   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,388   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,389   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,390   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,391   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,392   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,393   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2023-09-08T17:53:30,394   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,395   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,396   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,397   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,398   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,399   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,400   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,401   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,402   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,403   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,404   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,405   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,406   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,407   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,408   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,409   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,410   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,411   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,412   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,413   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,414   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,415   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,416   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,417   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,418   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,419   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,420   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,421   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2023-09-08T17:53:30,421   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,422   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,423   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,424   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,425   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,426   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,427   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,428   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,429   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,430   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,431   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,432   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,433   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,434   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,435   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,436   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,437   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,438   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,439   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,439   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,440   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,440   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,441   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,442   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,442   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,443   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,443   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,444   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,444   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,445   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,445   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,446   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,447   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,447   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2023-09-08T17:53:30,448   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,449   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,450   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,450   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,450   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,451   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,451   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,452   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,452   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,453   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,454   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,455   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,455   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,456   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,456   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,457   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,458   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,458   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,459   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,459   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,460   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,460   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,461   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,461   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,462   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,463   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,463   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,464   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,464   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,465   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,466   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,466   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,467   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,467   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,468   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,468   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,469   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,470   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,471   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,472   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,473   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,474   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,475   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T17:53:30,476 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T17:53:30,477 Getting page https://www.piwheels.org/simple/python-libsbml/
2023-09-08T17:53:30,478 Found index url https://www.piwheels.org/simple/
2023-09-08T17:53:30,732 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2023-09-08T17:53:30,751   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,752   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,752   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,753   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,754   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,754   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,755   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,756   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,756   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,757   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,757   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,758   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,758   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,759   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,760   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,760   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,761   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,762   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,762   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,763   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,764   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,764   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,765   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,765   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,766   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,766   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,767   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,767   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,768   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,769   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,769   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,770   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,771   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,771   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,772   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,773   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,773   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,774   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,774   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,775   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,775   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,776   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,776   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,777   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,778   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,778   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,779   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,780   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,780   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,781   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,781   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,782   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,782   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,783   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,783   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,784   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,785   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,785   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,786   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,786   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,787   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,788   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,788   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,788   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,789   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,789   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,790   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,790   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,791   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,792   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,792   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,793   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T17:53:30,793 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T17:53:30,794 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2023-09-08T17:53:30,816 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2023-09-08T17:53:30,834 Collecting python-libsbml==5.11.4
2023-09-08T17:53:30,836   Created temporary directory: /tmp/pip-unpack-0a_vvqj7
2023-09-08T17:53:32,035   Downloading python-libsbml-5.11.4.tar.gz (3.6 MB)
2023-09-08T17:53:34,968   Added python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz to build tracker '/tmp/pip-build-tracker-3v2dhe3z'
2023-09-08T17:53:34,971   Running setup.py (path:/tmp/pip-wheel-vkwy80rw/python-libsbml_669bc02a0bc44c19b0fa2c2f368f9037/setup.py) egg_info for package python-libsbml
2023-09-08T17:53:34,971   Created temporary directory: /tmp/pip-pip-egg-info-psgiz722
2023-09-08T17:53:34,972   Preparing metadata (setup.py): started
2023-09-08T17:53:34,973   Running command python setup.py egg_info
2023-09-08T17:53:36,341   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T17:53:36,344   Source in /tmp/pip-wheel-vkwy80rw/python-libsbml_669bc02a0bc44c19b0fa2c2f368f9037 has version 5.11.4, which satisfies requirement python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz
2023-09-08T17:53:36,345   Removed python-libsbml==5.11.4 from https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz from build tracker '/tmp/pip-build-tracker-3v2dhe3z'
2023-09-08T17:53:36,349 Created temporary directory: /tmp/pip-unpack-juc35609
2023-09-08T17:53:36,350 Created temporary directory: /tmp/pip-unpack-zw889nq_
2023-09-08T17:53:36,352 Building wheels for collected packages: python-libsbml
2023-09-08T17:53:36,356   Created temporary directory: /tmp/pip-wheel-ios1xizy
2023-09-08T17:53:36,356   Building wheel for python-libsbml (setup.py): started
2023-09-08T17:53:36,358   Destination directory: /tmp/pip-wheel-ios1xizy
2023-09-08T17:53:36,358   Running command python setup.py bdist_wheel
2023-09-08T17:53:42,125   ./base/libsbml_wrap.cpp:3179:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:42,126    3179 |     UnknownExceptionHandler(std::unexpected_handler nh = handler) {
2023-09-08T17:53:42,127         |                                                                 ^
2023-09-08T17:53:42,133   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2023-09-08T17:53:42,134   ./base/libsbml_wrap.cpp:3180:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:42,134    3180 |       old = std::set_unexpected(nh);
2023-09-08T17:53:42,135         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:53:42,136   In file included from /usr/include/c++/12/ios:39,
2023-09-08T17:53:42,137                    from /usr/include/c++/12/ostream:38,
2023-09-08T17:53:42,137                    from /usr/include/c++/12/iostream:39,
2023-09-08T17:53:42,138                    from ./base/libsbml_wrap.cpp:2949:
2023-09-08T17:53:42,138   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T17:53:42,139      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T17:53:42,140         |                      ^~~~~~~~~~~~~~
2023-09-08T17:53:42,140   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2023-09-08T17:53:42,141   ./base/libsbml_wrap.cpp:3184:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:42,142    3184 |       std::set_unexpected(old);
2023-09-08T17:53:42,142         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T17:53:42,143   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T17:53:42,144      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T17:53:42,145         |                      ^~~~~~~~~~~~~~
2023-09-08T17:53:42,955   In file included from ./base/libsbml.h:45,
2023-09-08T17:53:42,956                    from ./base/libsbml_wrap.cpp:3748:
2023-09-08T17:53:42,957   ./base//sbml/ListOf.h: At global scope:
2023-09-08T17:53:42,957   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:42,958      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:53:42,958         |                           ^~~~~~~~~~~~~~
2023-09-08T17:53:42,959   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:53:42,959                    from ./base/libsbml_wrap.cpp:2948:
2023-09-08T17:53:42,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:53:42,960     117 |     struct unary_function
2023-09-08T17:53:42,961         |            ^~~~~~~~~~~~~~
2023-09-08T17:53:43,798   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T17:53:43,799                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T17:53:43,800                    from ./base/../swig/fbc-package.h:36,
2023-09-08T17:53:43,800                    from ./base/../swig/libsbml-packages.h:4,
2023-09-08T17:53:43,801                    from ./base/libsbml_wrap.cpp:3752:
2023-09-08T17:53:43,801   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:43,802     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T17:53:43,802         |                                          ^~~~~~~~~~~~~~
2023-09-08T17:53:43,803   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:53:43,804     117 |     struct unary_function
2023-09-08T17:53:43,805         |            ^~~~~~~~~~~~~~
2023-09-08T17:53:43,808   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:43,809     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T17:53:43,810         |                                      ^~~~~~~~~~~~~~
2023-09-08T17:53:43,810   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:53:43,811     117 |     struct unary_function
2023-09-08T17:53:43,811         |            ^~~~~~~~~~~~~~
2023-09-08T17:53:43,828   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T17:53:43,829   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:43,830     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T17:53:43,830         |                                            ^~~~~~~~~~~~~~
2023-09-08T17:53:43,831   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:53:43,832     117 |     struct unary_function
2023-09-08T17:53:43,832         |            ^~~~~~~~~~~~~~
2023-09-08T17:53:44,081   ./base/libsbml_wrap.cpp:4675:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:44,081    4675 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2023-09-08T17:53:44,082         |                                    ^~~~~~~~~~~~~~~
2023-09-08T17:53:44,083   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T17:53:44,083     131 |     struct binary_function
2023-09-08T17:53:44,084         |            ^~~~~~~~~~~~~~~
2023-09-08T17:53:44,085   ./base/libsbml_wrap.cpp:4700:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:44,085    4700 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2023-09-08T17:53:44,086         |                                                ^~~~~~~~~~~~~~~
2023-09-08T17:53:44,087   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T17:53:44,087     131 |     struct binary_function
2023-09-08T17:53:44,087         |            ^~~~~~~~~~~~~~~
2023-09-08T17:53:44,088   ./base/libsbml_wrap.cpp:4710:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:53:44,089    4710 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2023-09-08T17:53:44,090         |                                                ^~~~~~~~~~~~~~~
2023-09-08T17:53:44,090   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T17:53:44,091     131 |     struct binary_function
2023-09-08T17:53:44,091         |            ^~~~~~~~~~~~~~~
2023-09-08T17:59:31,001   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T17:59:31,002                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T17:59:31,003                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T17:59:31,003                    from ./base/sbml/AlgebraicRule.cpp:49:
2023-09-08T17:59:31,004   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:31,004      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:59:31,005         |                           ^~~~~~~~~~~~~~
2023-09-08T17:59:31,005   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:59:31,006                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T17:59:31,007                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T17:59:31,007                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T17:59:31,008                    from ./base/sbml/AlgebraicRule.cpp:34:
2023-09-08T17:59:31,008   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:31,009     117 |     struct unary_function
2023-09-08T17:59:31,010         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:31,303   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2023-09-08T17:59:31,303   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:31,304     163 |   catch (SBMLConstructorException)
2023-09-08T17:59:31,305         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:31,306   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T17:59:31,306   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:31,307     179 |   catch (SBMLConstructorException)
2023-09-08T17:59:31,308         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:35,224   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T17:59:35,225                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T17:59:35,226                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T17:59:35,226                    from ./base/sbml/AssignmentRule.cpp:49:
2023-09-08T17:59:35,227   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:35,228      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:59:35,229         |                           ^~~~~~~~~~~~~~
2023-09-08T17:59:35,229   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:59:35,230                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T17:59:35,231                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T17:59:35,231                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T17:59:35,232                    from ./base/sbml/AssignmentRule.cpp:34:
2023-09-08T17:59:35,232   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:35,233     117 |     struct unary_function
2023-09-08T17:59:35,233         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:35,523   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2023-09-08T17:59:35,523   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:35,524     154 |   catch (SBMLConstructorException)
2023-09-08T17:59:35,525         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:35,525   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T17:59:35,526   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:35,526     170 |   catch (SBMLConstructorException)
2023-09-08T17:59:35,527         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:39,542   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T17:59:39,542                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T17:59:39,543                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T17:59:39,543                    from ./base/sbml/Compartment.cpp:41:
2023-09-08T17:59:39,544   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:39,545      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:59:39,545         |                           ^~~~~~~~~~~~~~
2023-09-08T17:59:39,546   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:59:39,547                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T17:59:39,547                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T17:59:39,548                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T17:59:39,549                    from ./base/sbml/Compartment.cpp:35:
2023-09-08T17:59:39,549   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:39,550     117 |     struct unary_function
2023-09-08T17:59:39,551         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:39,849   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T17:59:39,850   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T17:59:39,850     146 |   if (&orig == NULL)
2023-09-08T17:59:39,851         |             ^
2023-09-08T17:59:39,851   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2023-09-08T17:59:39,852     143 | Compartment::Compartment(const Compartment& orig) :
2023-09-08T17:59:39,852         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:59:39,854   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T17:59:39,855   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T17:59:39,856     175 |   if (&rhs == NULL)
2023-09-08T17:59:39,856         |            ^
2023-09-08T17:59:39,857   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2023-09-08T17:59:39,858     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2023-09-08T17:59:39,858         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,865   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T17:59:39,866   ./base/sbml/Compartment.cpp:500:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,866     500 |   if (&(sid) == NULL)
2023-09-08T17:59:39,867         |              ^
2023-09-08T17:59:39,867   ./base/sbml/Compartment.cpp:489:40: note: ‘sid’ declared here
2023-09-08T17:59:39,868     489 | Compartment::setId (const std::string& sid)
2023-09-08T17:59:39,868         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,869   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T17:59:39,869   ./base/sbml/Compartment.cpp:525:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T17:59:39,870     525 |   if (&(name) == NULL)
2023-09-08T17:59:39,870         |               ^
2023-09-08T17:59:39,871   ./base/sbml/Compartment.cpp:520:42: note: ‘name’ declared here
2023-09-08T17:59:39,871     520 | Compartment::setName (const std::string& name)
2023-09-08T17:59:39,872         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:59:39,873   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T17:59:39,873   ./base/sbml/Compartment.cpp:555:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,874     555 |   if (&(sid) == NULL)
2023-09-08T17:59:39,875         |              ^
2023-09-08T17:59:39,875   ./base/sbml/Compartment.cpp:553:53: note: ‘sid’ declared here
2023-09-08T17:59:39,876     553 | Compartment::setCompartmentType (const std::string& sid)
2023-09-08T17:59:39,876         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,879   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T17:59:39,879   ./base/sbml/Compartment.cpp:677:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,880     677 |   if (&(sid) == NULL)
2023-09-08T17:59:39,881         |              ^
2023-09-08T17:59:39,881   ./base/sbml/Compartment.cpp:675:43: note: ‘sid’ declared here
2023-09-08T17:59:39,882     675 | Compartment::setUnits (const std::string& sid)
2023-09-08T17:59:39,883         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,883   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T17:59:39,884   ./base/sbml/Compartment.cpp:699:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,885     699 |   if (&(sid) == NULL)
2023-09-08T17:59:39,885         |              ^
2023-09-08T17:59:39,886   ./base/sbml/Compartment.cpp:697:45: note: ‘sid’ declared here
2023-09-08T17:59:39,887     697 | Compartment::setOutside (const std::string& sid)
2023-09-08T17:59:39,887         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,939   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T17:59:39,939   ./base/sbml/Compartment.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,940    1573 |   if (&(sid) == NULL)
2023-09-08T17:59:39,941         |              ^
2023-09-08T17:59:39,941   ./base/sbml/Compartment.cpp:1569:45: note: ‘sid’ declared here
2023-09-08T17:59:39,942    1569 | ListOfCompartments::get (const std::string& sid) const
2023-09-08T17:59:39,943         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,946   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T17:59:39,947   ./base/sbml/Compartment.cpp:1601:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:39,948    1601 |   if (&(sid) != NULL)
2023-09-08T17:59:39,948         |              ^
2023-09-08T17:59:39,949   ./base/sbml/Compartment.cpp:1596:48: note: ‘sid’ declared here
2023-09-08T17:59:39,949    1596 | ListOfCompartments::remove (const std::string& sid)
2023-09-08T17:59:39,950         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:39,957   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2023-09-08T17:59:39,957   ./base/sbml/Compartment.cpp:1679:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:39,958    1679 |   catch (SBMLConstructorException)
2023-09-08T17:59:39,958         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:39,959   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T17:59:39,960   ./base/sbml/Compartment.cpp:1695:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:39,961    1695 |   catch (SBMLConstructorException)
2023-09-08T17:59:39,961         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:40,566   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T17:59:40,567   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,568     146 |   if (&orig == NULL)
2023-09-08T17:59:40,568         |   ^~
2023-09-08T17:59:40,569   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T17:59:40,570   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,570     175 |   if (&rhs == NULL)
2023-09-08T17:59:40,571         |   ^~
2023-09-08T17:59:40,574   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T17:59:40,575   ./base/sbml/Compartment.cpp:500:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,576     500 |   if (&(sid) == NULL)
2023-09-08T17:59:40,576         |   ^~
2023-09-08T17:59:40,577   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T17:59:40,577   ./base/sbml/Compartment.cpp:525:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,578     525 |   if (&(name) == NULL)
2023-09-08T17:59:40,579         |   ^~
2023-09-08T17:59:40,579   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T17:59:40,580   ./base/sbml/Compartment.cpp:555:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,580     555 |   if (&(sid) == NULL)
2023-09-08T17:59:40,581         |   ^~
2023-09-08T17:59:40,582   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T17:59:40,582   ./base/sbml/Compartment.cpp:677:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,583     677 |   if (&(sid) == NULL)
2023-09-08T17:59:40,584         |   ^~
2023-09-08T17:59:40,584   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T17:59:40,585   ./base/sbml/Compartment.cpp:699:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,586     699 |   if (&(sid) == NULL)
2023-09-08T17:59:40,587         |   ^~
2023-09-08T17:59:40,587   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T17:59:40,588   ./base/sbml/Compartment.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,589    1573 |   if (&(sid) == NULL)
2023-09-08T17:59:40,590         |   ^~
2023-09-08T17:59:40,599   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T17:59:40,599   ./base/sbml/Compartment.cpp:1601:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:40,600    1601 |   if (&(sid) != NULL)
2023-09-08T17:59:40,600         |   ^~
2023-09-08T17:59:48,997   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T17:59:48,998                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T17:59:48,998                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T17:59:48,999                    from ./base/sbml/CompartmentType.cpp:40:
2023-09-08T17:59:48,999   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:49,000      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:59:49,000         |                           ^~~~~~~~~~~~~~
2023-09-08T17:59:49,001   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:59:49,002                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T17:59:49,002                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T17:59:49,003                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T17:59:49,003                    from ./base/sbml/CompartmentType.cpp:33:
2023-09-08T17:59:49,004   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:49,004     117 |     struct unary_function
2023-09-08T17:59:49,005         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:49,301   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T17:59:49,301   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T17:59:49,302      92 |   if (&orig == NULL)
2023-09-08T17:59:49,303         |             ^
2023-09-08T17:59:49,304   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2023-09-08T17:59:49,304      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2023-09-08T17:59:49,305         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:59:49,306   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T17:59:49,307   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T17:59:49,308     110 |   if (&rhs == NULL)
2023-09-08T17:59:49,309         |            ^
2023-09-08T17:59:49,310   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2023-09-08T17:59:49,311     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2023-09-08T17:59:49,312         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:49,313   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T17:59:49,314   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:49,315     207 |   if (&(sid) == NULL)
2023-09-08T17:59:49,316         |              ^
2023-09-08T17:59:49,317   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2023-09-08T17:59:49,319     196 | CompartmentType::setId (const std::string& sid)
2023-09-08T17:59:49,320         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:49,322   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T17:59:49,323   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T17:59:49,324     232 |   if (&(name) == NULL)
2023-09-08T17:59:49,325         |               ^
2023-09-08T17:59:49,325   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2023-09-08T17:59:49,326     227 | CompartmentType::setName (const std::string& name)
2023-09-08T17:59:49,326         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:59:49,327   ./base/sbml/CompartmentType.cpp: At global scope:
2023-09-08T17:59:49,327   ./base/sbml/CompartmentType.cpp:544:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:49,328     544 | struct IdEqCT : public unary_function<SBase*, bool>
2023-09-08T17:59:49,329         |                        ^~~~~~~~~~~~~~
2023-09-08T17:59:49,329   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:49,330     117 |     struct unary_function
2023-09-08T17:59:49,330         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:49,332   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T17:59:49,332   ./base/sbml/CompartmentType.cpp:569:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:49,333     569 |   if (&(sid) == NULL)
2023-09-08T17:59:49,333         |              ^
2023-09-08T17:59:49,334   ./base/sbml/CompartmentType.cpp:565:49: note: ‘sid’ declared here
2023-09-08T17:59:49,335     565 | ListOfCompartmentTypes::get (const std::string& sid) const
2023-09-08T17:59:49,336         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:49,337   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T17:59:49,337   ./base/sbml/CompartmentType.cpp:597:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T17:59:49,338     597 |   if (&(sid) != NULL)
2023-09-08T17:59:49,339         |              ^
2023-09-08T17:59:49,339   ./base/sbml/CompartmentType.cpp:592:52: note: ‘sid’ declared here
2023-09-08T17:59:49,340     592 | ListOfCompartmentTypes::remove (const std::string& sid)
2023-09-08T17:59:49,341         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:49,345   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2023-09-08T17:59:49,346   ./base/sbml/CompartmentType.cpp:675:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:49,346     675 |   catch (SBMLConstructorException)
2023-09-08T17:59:49,347         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:49,348   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T17:59:49,348   ./base/sbml/CompartmentType.cpp:691:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:49,349     691 |   catch (SBMLConstructorException)
2023-09-08T17:59:49,350         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:49,914   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T17:59:49,915   ./base/sbml/CompartmentType.cpp:569:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,916     569 |   if (&(sid) == NULL)
2023-09-08T17:59:49,916         |   ^~
2023-09-08T17:59:49,918   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T17:59:49,918   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,919      92 |   if (&orig == NULL)
2023-09-08T17:59:49,920         |   ^~
2023-09-08T17:59:49,920   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T17:59:49,921   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,921     110 |   if (&rhs == NULL)
2023-09-08T17:59:49,922         |   ^~
2023-09-08T17:59:49,922   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T17:59:49,923   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,924     207 |   if (&(sid) == NULL)
2023-09-08T17:59:49,924         |   ^~
2023-09-08T17:59:49,925   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T17:59:49,925   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,926     232 |   if (&(name) == NULL)
2023-09-08T17:59:49,926         |   ^~
2023-09-08T17:59:49,929   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T17:59:49,929   ./base/sbml/CompartmentType.cpp:597:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:49,930     597 |   if (&(sid) != NULL)
2023-09-08T17:59:49,930         |   ^~
2023-09-08T17:59:54,999   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T17:59:55,000                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T17:59:55,001                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T17:59:55,002                    from ./base/sbml/Constraint.cpp:43:
2023-09-08T17:59:55,002   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T17:59:55,003      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T17:59:55,004         |                           ^~~~~~~~~~~~~~
2023-09-08T17:59:55,005   In file included from /usr/include/c++/12/string:48,
2023-09-08T17:59:55,005                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T17:59:55,006                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T17:59:55,007                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T17:59:55,008                    from ./base/sbml/Constraint.cpp:33:
2023-09-08T17:59:55,008   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T17:59:55,009     117 |     struct unary_function
2023-09-08T17:59:55,010         |            ^~~~~~~~~~~~~~
2023-09-08T17:59:55,295   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T17:59:55,296   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T17:59:55,296     101 |   if (&orig == NULL)
2023-09-08T17:59:55,297         |             ^
2023-09-08T17:59:55,298   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2023-09-08T17:59:55,299      96 | Constraint::Constraint (const Constraint& orig) :
2023-09-08T17:59:55,299         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T17:59:55,300   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T17:59:55,301   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T17:59:55,302     122 |   if (&rhs == NULL)
2023-09-08T17:59:55,303         |            ^
2023-09-08T17:59:55,304   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2023-09-08T17:59:55,304     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2023-09-08T17:59:55,305         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T17:59:55,308   ./base/sbml/Constraint.cpp: In member function ‘int Constraint::setMessage(const std::string&, bool)’:
2023-09-08T17:59:55,308   ./base/sbml/Constraint.cpp:300:18: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T17:59:55,309     300 |   if (&(message) == NULL)
2023-09-08T17:59:55,310         |                  ^
2023-09-08T17:59:55,310   ./base/sbml/Constraint.cpp:296:44: note: ‘message’ declared here
2023-09-08T17:59:55,311     296 | Constraint::setMessage (const std::string& message,
2023-09-08T17:59:55,311         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T17:59:55,337   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2023-09-08T17:59:55,338   ./base/sbml/Constraint.cpp:878:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:55,339     878 |   catch (SBMLConstructorException)
2023-09-08T17:59:55,339         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:55,340   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T17:59:55,341   ./base/sbml/Constraint.cpp:894:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T17:59:55,341     894 |   catch (SBMLConstructorException)
2023-09-08T17:59:55,342         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T17:59:55,879   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T17:59:55,880   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:55,880     101 |   if (&orig == NULL)
2023-09-08T17:59:55,881         |   ^~
2023-09-08T17:59:55,882   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T17:59:55,882   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:55,883     122 |   if (&rhs == NULL)
2023-09-08T17:59:55,884         |   ^~
2023-09-08T17:59:55,892   ./base/sbml/Constraint.cpp: In member function ‘int Constraint::setMessage(const std::string&, bool)’:
2023-09-08T17:59:55,892   ./base/sbml/Constraint.cpp:300:3: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T17:59:55,893     300 |   if (&(message) == NULL)
2023-09-08T17:59:55,894         |   ^~
2023-09-08T18:00:00,847   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:00,847                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:00,848                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:00,848                    from ./base/sbml/Delay.cpp:45:
2023-09-08T18:00:00,849   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:00,849      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:00,850         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:00,851   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:00,851                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:00,852                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:00,852                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:00,853                    from ./base/sbml/Delay.cpp:33:
2023-09-08T18:00:00,854   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:00,854     117 |     struct unary_function
2023-09-08T18:00:00,855         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:01,155   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T18:00:01,156   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:01,156     100 |   if (&orig == NULL)
2023-09-08T18:00:01,156         |             ^
2023-09-08T18:00:01,157   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2023-09-08T18:00:01,157      96 | Delay::Delay (const Delay& orig) :
2023-09-08T18:00:01,158         |               ~~~~~~~~~~~~~^~~~
2023-09-08T18:00:01,160   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T18:00:01,160   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:01,161     122 |   if (&rhs == NULL)
2023-09-08T18:00:01,161         |            ^
2023-09-08T18:00:01,162   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2023-09-08T18:00:01,162     120 | Delay& Delay::operator=(const Delay& rhs)
2023-09-08T18:00:01,163         |                         ~~~~~~~~~~~~~^~~
2023-09-08T18:00:01,184   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2023-09-08T18:00:01,185   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:01,186     648 |   catch (SBMLConstructorException)
2023-09-08T18:00:01,186         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:01,188   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:01,189   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:01,190     664 |   catch (SBMLConstructorException)
2023-09-08T18:00:01,190         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:01,679   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T18:00:01,680   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:01,681     100 |   if (&orig == NULL)
2023-09-08T18:00:01,681         |   ^~
2023-09-08T18:00:01,682   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T18:00:01,683   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:01,683     122 |   if (&rhs == NULL)
2023-09-08T18:00:01,684         |   ^~
2023-09-08T18:00:05,700   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:05,700                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:05,701                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:05,702                    from ./base/sbml/Event.cpp:44:
2023-09-08T18:00:05,702   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:05,703      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:05,703         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:05,704   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:05,705                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:05,705                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:05,706                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:05,706                    from ./base/sbml/Event.cpp:33:
2023-09-08T18:00:05,707   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:05,708     117 |     struct unary_function
2023-09-08T18:00:05,708         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:06,002   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T18:00:06,004   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:06,005     134 |   if (&orig == NULL)
2023-09-08T18:00:06,005         |             ^
2023-09-08T18:00:06,006   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2023-09-08T18:00:06,006     127 | Event::Event (const Event& orig) :
2023-09-08T18:00:06,007         |               ~~~~~~~~~~~~~^~~~
2023-09-08T18:00:06,007   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T18:00:06,008   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:06,009     171 |   if (&rhs == NULL)
2023-09-08T18:00:06,009         |            ^
2023-09-08T18:00:06,010   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2023-09-08T18:00:06,010     169 | Event& Event::operator=(const Event& rhs)
2023-09-08T18:00:06,011         |                         ~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,028   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T18:00:06,029   ./base/sbml/Event.cpp:538:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:06,030     538 |   if (&(sid) == NULL)
2023-09-08T18:00:06,030         |              ^
2023-09-08T18:00:06,031   ./base/sbml/Event.cpp:527:34: note: ‘sid’ declared here
2023-09-08T18:00:06,032     527 | Event::setId (const std::string& sid)
2023-09-08T18:00:06,032         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,033   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T18:00:06,034   ./base/sbml/Event.cpp:564:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:00:06,034     564 |   if (&(name) == NULL)
2023-09-08T18:00:06,035         |               ^
2023-09-08T18:00:06,036   ./base/sbml/Event.cpp:559:36: note: ‘name’ declared here
2023-09-08T18:00:06,037     559 | Event::setName (const std::string& name)
2023-09-08T18:00:06,037         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:06,040   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T18:00:06,041   ./base/sbml/Event.cpp:712:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:06,042     712 |   if (&(sid) == NULL)
2023-09-08T18:00:06,043         |              ^
2023-09-08T18:00:06,043   ./base/sbml/Event.cpp:710:41: note: ‘sid’ declared here
2023-09-08T18:00:06,044     710 | Event::setTimeUnits (const std::string& sid)
2023-09-08T18:00:06,045         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,052   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2023-09-08T18:00:06,053   ./base/sbml/Event.cpp:1111:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T18:00:06,054    1111 |   return (&variable != NULL ) ?
2023-09-08T18:00:06,055         |                     ^
2023-09-08T18:00:06,055   ./base/sbml/Event.cpp:1109:47: note: ‘variable’ declared here
2023-09-08T18:00:06,056    1109 | Event::getEventAssignment (const std::string& variable) const
2023-09-08T18:00:06,057         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:00:06,058   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2023-09-08T18:00:06,058   ./base/sbml/Event.cpp:1123:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T18:00:06,059    1123 |   return (&variable != NULL ) ?
2023-09-08T18:00:06,060         |                     ^
2023-09-08T18:00:06,061   ./base/sbml/Event.cpp:1121:47: note: ‘variable’ declared here
2023-09-08T18:00:06,062    1121 | Event::getEventAssignment (const std::string& variable)
2023-09-08T18:00:06,062         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:00:06,063   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2023-09-08T18:00:06,063   ./base/sbml/Event.cpp:1156:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T18:00:06,064    1156 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2023-09-08T18:00:06,064         |                     ^
2023-09-08T18:00:06,065   ./base/sbml/Event.cpp:1154:50: note: ‘variable’ declared here
2023-09-08T18:00:06,065    1154 | Event::removeEventAssignment (const std::string& variable)
2023-09-08T18:00:06,066         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:00:06,096   ./base/sbml/Event.cpp: At global scope:
2023-09-08T18:00:06,097   ./base/sbml/Event.cpp:1775:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:06,097    1775 | struct IdEqE : public unary_function<SBase*, bool>
2023-09-08T18:00:06,098         |                       ^~~~~~~~~~~~~~
2023-09-08T18:00:06,099   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:06,099     117 |     struct unary_function
2023-09-08T18:00:06,100         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:06,100   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2023-09-08T18:00:06,101   ./base/sbml/Event.cpp:1789:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:06,102    1789 |   return (&sid != NULL) ? const_cast<Event*>(
2023-09-08T18:00:06,102         |                ^
2023-09-08T18:00:06,103   ./base/sbml/Event.cpp:1787:39: note: ‘sid’ declared here
2023-09-08T18:00:06,104    1787 | ListOfEvents::get (const std::string& sid)
2023-09-08T18:00:06,104         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,105   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T18:00:06,106   ./base/sbml/Event.cpp:1798:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:06,106    1798 |   if (&sid == NULL) return NULL;
2023-09-08T18:00:06,107         |            ^
2023-09-08T18:00:06,108   ./base/sbml/Event.cpp:1796:39: note: ‘sid’ declared here
2023-09-08T18:00:06,109    1796 | ListOfEvents::get (const std::string& sid) const
2023-09-08T18:00:06,110         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,110   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T18:00:06,111   ./base/sbml/Event.cpp:1821:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:06,112    1821 |   if (&(sid) != NULL)
2023-09-08T18:00:06,112         |              ^
2023-09-08T18:00:06,113   ./base/sbml/Event.cpp:1816:42: note: ‘sid’ declared here
2023-09-08T18:00:06,114    1816 | ListOfEvents::remove (const std::string& sid)
2023-09-08T18:00:06,114         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:06,119   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2023-09-08T18:00:06,120   ./base/sbml/Event.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:06,121    1900 |   catch (SBMLConstructorException)
2023-09-08T18:00:06,122         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:06,122   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:06,123   ./base/sbml/Event.cpp:1916:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:06,124    1916 |   catch (SBMLConstructorException)
2023-09-08T18:00:06,125         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:06,739   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T18:00:06,739   ./base/sbml/Event.cpp:1798:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,740    1798 |   if (&sid == NULL) return NULL;
2023-09-08T18:00:06,740         |   ^~
2023-09-08T18:00:06,742   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T18:00:06,743   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,744     171 |   if (&rhs == NULL)
2023-09-08T18:00:06,744         |   ^~
2023-09-08T18:00:06,749   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T18:00:06,750   ./base/sbml/Event.cpp:538:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,750     538 |   if (&(sid) == NULL)
2023-09-08T18:00:06,751         |   ^~
2023-09-08T18:00:06,751   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T18:00:06,752   ./base/sbml/Event.cpp:564:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,752     564 |   if (&(name) == NULL)
2023-09-08T18:00:06,753         |   ^~
2023-09-08T18:00:06,753   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T18:00:06,754   ./base/sbml/Event.cpp:712:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,755     712 |   if (&(sid) == NULL)
2023-09-08T18:00:06,755         |   ^~
2023-09-08T18:00:06,761   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T18:00:06,761   ./base/sbml/Event.cpp:1821:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,762    1821 |   if (&(sid) != NULL)
2023-09-08T18:00:06,763         |   ^~
2023-09-08T18:00:06,767   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T18:00:06,768   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:06,768     134 |   if (&orig == NULL)
2023-09-08T18:00:06,769         |   ^~
2023-09-08T18:00:14,330   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:14,331                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:14,331                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:14,332                    from ./base/sbml/EventAssignment.cpp:44:
2023-09-08T18:00:14,332   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:14,333      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:14,334         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:14,335   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:14,335                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:14,336                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:14,337                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:14,337                    from ./base/sbml/EventAssignment.cpp:33:
2023-09-08T18:00:14,338   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:14,339     117 |     struct unary_function
2023-09-08T18:00:14,340         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:14,655   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T18:00:14,656   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:14,657     100 |   if (&orig == NULL)
2023-09-08T18:00:14,657         |             ^
2023-09-08T18:00:14,658   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2023-09-08T18:00:14,658      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2023-09-08T18:00:14,659         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:14,660   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T18:00:14,661   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:14,661     122 |   if (&rhs == NULL)
2023-09-08T18:00:14,662         |            ^
2023-09-08T18:00:14,662   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2023-09-08T18:00:14,663     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2023-09-08T18:00:14,663         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:14,667   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T18:00:14,667   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:14,668     219 |   if (&(sid) == NULL)
2023-09-08T18:00:14,668         |              ^
2023-09-08T18:00:14,669   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2023-09-08T18:00:14,669     217 | EventAssignment::setVariable (const std::string& sid)
2023-09-08T18:00:14,670         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:14,701   ./base/sbml/EventAssignment.cpp: At global scope:
2023-09-08T18:00:14,702   ./base/sbml/EventAssignment.cpp:863:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:14,702     863 | struct IdEqEA : public unary_function<SBase*, bool>
2023-09-08T18:00:14,703         |                        ^~~~~~~~~~~~~~
2023-09-08T18:00:14,704   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:14,704     117 |     struct unary_function
2023-09-08T18:00:14,705         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:14,708   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T18:00:14,709   ./base/sbml/EventAssignment.cpp:888:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:14,710     888 |   if (&(sid) == NULL)
2023-09-08T18:00:14,710         |              ^
2023-09-08T18:00:14,711   ./base/sbml/EventAssignment.cpp:884:49: note: ‘sid’ declared here
2023-09-08T18:00:14,712     884 | ListOfEventAssignments::get (const std::string& sid) const
2023-09-08T18:00:14,712         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:14,716   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T18:00:14,717   ./base/sbml/EventAssignment.cpp:916:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:14,717     916 |   if (&(sid) != NULL)
2023-09-08T18:00:14,718         |              ^
2023-09-08T18:00:14,719   ./base/sbml/EventAssignment.cpp:911:52: note: ‘sid’ declared here
2023-09-08T18:00:14,720     911 | ListOfEventAssignments::remove (const std::string& sid)
2023-09-08T18:00:14,720         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:14,728   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2023-09-08T18:00:14,729   ./base/sbml/EventAssignment.cpp:1009:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:14,730    1009 |   catch (SBMLConstructorException)
2023-09-08T18:00:14,730         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:14,731   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:14,732   ./base/sbml/EventAssignment.cpp:1025:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:14,732    1025 |   catch (SBMLConstructorException)
2023-09-08T18:00:14,733         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:15,309   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T18:00:15,310   ./base/sbml/EventAssignment.cpp:888:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:15,311     888 |   if (&(sid) == NULL)
2023-09-08T18:00:15,311         |   ^~
2023-09-08T18:00:15,314   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T18:00:15,315   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:15,316     100 |   if (&orig == NULL)
2023-09-08T18:00:15,316         |   ^~
2023-09-08T18:00:15,317   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T18:00:15,318   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:15,318     122 |   if (&rhs == NULL)
2023-09-08T18:00:15,319         |   ^~
2023-09-08T18:00:15,321   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T18:00:15,322   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:15,323     219 |   if (&(sid) == NULL)
2023-09-08T18:00:15,323         |   ^~
2023-09-08T18:00:15,332   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T18:00:15,333   ./base/sbml/EventAssignment.cpp:916:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:15,334     916 |   if (&(sid) != NULL)
2023-09-08T18:00:15,334         |   ^~
2023-09-08T18:00:23,466   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:23,467                    from ./base/sbml/FunctionDefinition.cpp:47:
2023-09-08T18:00:23,467   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:23,468      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:23,469         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:23,469   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:23,470                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:23,471                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:23,471                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:23,472                    from ./base/sbml/FunctionDefinition.cpp:35:
2023-09-08T18:00:23,473   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:23,474     117 |     struct unary_function
2023-09-08T18:00:23,474         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:23,826   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T18:00:23,826   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:23,827     102 |   if (&orig == NULL)
2023-09-08T18:00:23,828         |             ^
2023-09-08T18:00:23,829   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2023-09-08T18:00:23,829      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2023-09-08T18:00:23,830         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:23,830   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T18:00:23,831   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:23,832     125 |   if (&rhs == NULL)
2023-09-08T18:00:23,832         |            ^
2023-09-08T18:00:23,833   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2023-09-08T18:00:23,833     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2023-09-08T18:00:23,834         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:23,835   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T18:00:23,835   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:23,836     253 |   if (&(sid) == NULL)
2023-09-08T18:00:23,836         |              ^
2023-09-08T18:00:23,837   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2023-09-08T18:00:23,838     242 | FunctionDefinition::setId (const std::string& sid)
2023-09-08T18:00:23,839         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:23,839   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T18:00:23,840   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:00:23,841     278 |   if (&(name) == NULL)
2023-09-08T18:00:23,842         |               ^
2023-09-08T18:00:23,842   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2023-09-08T18:00:23,843     273 | FunctionDefinition::setName (const std::string& name)
2023-09-08T18:00:23,844         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:23,867   ./base/sbml/FunctionDefinition.cpp: At global scope:
2023-09-08T18:00:23,867   ./base/sbml/FunctionDefinition.cpp:998:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:23,868     998 | struct IdEqFD : public unary_function<SBase*, bool>
2023-09-08T18:00:23,869         |                        ^~~~~~~~~~~~~~
2023-09-08T18:00:23,870   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:23,870     117 |     struct unary_function
2023-09-08T18:00:23,871         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:23,872   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T18:00:23,872   ./base/sbml/FunctionDefinition.cpp:1023:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:23,873    1023 |   if (&(sid) == NULL)
2023-09-08T18:00:23,874         |              ^
2023-09-08T18:00:23,875   ./base/sbml/FunctionDefinition.cpp:1019:52: note: ‘sid’ declared here
2023-09-08T18:00:23,875    1019 | ListOfFunctionDefinitions::get (const std::string& sid) const
2023-09-08T18:00:23,876         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:23,877   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T18:00:23,878   ./base/sbml/FunctionDefinition.cpp:1051:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:23,878    1051 |   if (&(sid) != NULL)
2023-09-08T18:00:23,879         |              ^
2023-09-08T18:00:23,879   ./base/sbml/FunctionDefinition.cpp:1046:55: note: ‘sid’ declared here
2023-09-08T18:00:23,880    1046 | ListOfFunctionDefinitions::remove (const std::string& sid)
2023-09-08T18:00:23,880         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:23,885   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2023-09-08T18:00:23,885   ./base/sbml/FunctionDefinition.cpp:1128:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:23,886    1128 |   catch (SBMLConstructorException)
2023-09-08T18:00:23,887         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:23,887   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:23,888   ./base/sbml/FunctionDefinition.cpp:1144:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:23,889    1144 |   catch (SBMLConstructorException)
2023-09-08T18:00:23,889         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:24,472   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T18:00:24,473   ./base/sbml/FunctionDefinition.cpp:1023:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,473    1023 |   if (&(sid) == NULL)
2023-09-08T18:00:24,474         |   ^~
2023-09-08T18:00:24,475   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T18:00:24,476   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,477     102 |   if (&orig == NULL)
2023-09-08T18:00:24,477         |   ^~
2023-09-08T18:00:24,478   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T18:00:24,478   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,479     125 |   if (&rhs == NULL)
2023-09-08T18:00:24,480         |   ^~
2023-09-08T18:00:24,480   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T18:00:24,481   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,482     253 |   if (&(sid) == NULL)
2023-09-08T18:00:24,482         |   ^~
2023-09-08T18:00:24,483   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T18:00:24,483   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,484     278 |   if (&(name) == NULL)
2023-09-08T18:00:24,485         |   ^~
2023-09-08T18:00:24,488   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T18:00:24,488   ./base/sbml/FunctionDefinition.cpp:1051:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:24,489    1051 |   if (&(sid) != NULL)
2023-09-08T18:00:24,490         |   ^~
2023-09-08T18:00:30,288   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:30,288                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:30,289                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:30,289                    from ./base/sbml/InitialAssignment.cpp:43:
2023-09-08T18:00:30,290   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:30,290      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:30,291         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:30,291   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:30,292                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:30,292                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:30,293                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:30,293                    from ./base/sbml/InitialAssignment.cpp:33:
2023-09-08T18:00:30,294   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:30,294     117 |     struct unary_function
2023-09-08T18:00:30,295         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:30,590   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T18:00:30,590   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:30,591      97 |   if (&orig == NULL)
2023-09-08T18:00:30,591         |             ^
2023-09-08T18:00:30,592   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2023-09-08T18:00:30,593      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2023-09-08T18:00:30,593         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:30,595   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T18:00:30,595   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:30,596     119 |   if (&rhs == NULL)
2023-09-08T18:00:30,597         |            ^
2023-09-08T18:00:30,598   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2023-09-08T18:00:30,598     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2023-09-08T18:00:30,599         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:30,602   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T18:00:30,602   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:30,603     232 |   if (&(sid) == NULL)
2023-09-08T18:00:30,604         |              ^
2023-09-08T18:00:30,604   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2023-09-08T18:00:30,605     230 | InitialAssignment::setSymbol (const std::string& sid)
2023-09-08T18:00:30,606         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:30,635   ./base/sbml/InitialAssignment.cpp: At global scope:
2023-09-08T18:00:30,636   ./base/sbml/InitialAssignment.cpp:861:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:30,637     861 | struct IdEqIA : public unary_function<SBase*, bool>
2023-09-08T18:00:30,638         |                        ^~~~~~~~~~~~~~
2023-09-08T18:00:30,638   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:30,639     117 |     struct unary_function
2023-09-08T18:00:30,640         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:30,643   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T18:00:30,644   ./base/sbml/InitialAssignment.cpp:886:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:30,645     886 |   if (&(sid) == NULL)
2023-09-08T18:00:30,645         |              ^
2023-09-08T18:00:30,646   ./base/sbml/InitialAssignment.cpp:882:51: note: ‘sid’ declared here
2023-09-08T18:00:30,646     882 | ListOfInitialAssignments::get (const std::string& sid) const
2023-09-08T18:00:30,647         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:30,650   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T18:00:30,651   ./base/sbml/InitialAssignment.cpp:914:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:30,652     914 |   if (&(sid) != NULL)
2023-09-08T18:00:30,652         |              ^
2023-09-08T18:00:30,653   ./base/sbml/InitialAssignment.cpp:909:54: note: ‘sid’ declared here
2023-09-08T18:00:30,653     909 | ListOfInitialAssignments::remove (const std::string& sid)
2023-09-08T18:00:30,654         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:30,661   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2023-09-08T18:00:30,662   ./base/sbml/InitialAssignment.cpp:1007:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:30,662    1007 |   catch (SBMLConstructorException)
2023-09-08T18:00:30,663         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:30,664   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:30,664   ./base/sbml/InitialAssignment.cpp:1023:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:30,665    1023 |   catch (SBMLConstructorException)
2023-09-08T18:00:30,666         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:31,239   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T18:00:31,240   ./base/sbml/InitialAssignment.cpp:886:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:31,241     886 |   if (&(sid) == NULL)
2023-09-08T18:00:31,241         |   ^~
2023-09-08T18:00:31,242   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T18:00:31,243   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:31,244      97 |   if (&orig == NULL)
2023-09-08T18:00:31,245         |   ^~
2023-09-08T18:00:31,245   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T18:00:31,246   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:31,247     119 |   if (&rhs == NULL)
2023-09-08T18:00:31,247         |   ^~
2023-09-08T18:00:31,248   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T18:00:31,248   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:31,249     232 |   if (&(sid) == NULL)
2023-09-08T18:00:31,250         |   ^~
2023-09-08T18:00:31,255   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T18:00:31,256   ./base/sbml/InitialAssignment.cpp:914:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:31,257     914 |   if (&(sid) != NULL)
2023-09-08T18:00:31,257         |   ^~
2023-09-08T18:00:36,985   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:36,985                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:36,986                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:36,987                    from ./base/sbml/KineticLaw.cpp:45:
2023-09-08T18:00:36,987   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:36,988      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:36,988         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:36,989   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:36,989                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:36,990                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:36,990                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:36,991                    from ./base/sbml/KineticLaw.cpp:33:
2023-09-08T18:00:36,991   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:36,992     117 |     struct unary_function
2023-09-08T18:00:36,993         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:37,290   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T18:00:37,290   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:37,291     117 |   if (&orig == NULL)
2023-09-08T18:00:37,292         |             ^
2023-09-08T18:00:37,292   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2023-09-08T18:00:37,293     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2023-09-08T18:00:37,294         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:37,295   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T18:00:37,295   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:37,296     143 |   if (&rhs == NULL)
2023-09-08T18:00:37,297         |            ^
2023-09-08T18:00:37,297   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2023-09-08T18:00:37,298     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2023-09-08T18:00:37,299         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:37,310   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T18:00:37,311   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T18:00:37,311     363 |   if (&(formula) == NULL)
2023-09-08T18:00:37,312         |                  ^
2023-09-08T18:00:37,313   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2023-09-08T18:00:37,313     361 | KineticLaw::setFormula (const std::string& formula)
2023-09-08T18:00:37,314         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:00:37,315   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T18:00:37,315   ./base/sbml/KineticLaw.cpp:437:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:37,316     437 |   if (&(sid) == NULL)
2023-09-08T18:00:37,317         |              ^
2023-09-08T18:00:37,318   ./base/sbml/KineticLaw.cpp:434:46: note: ‘sid’ declared here
2023-09-08T18:00:37,318     434 | KineticLaw::setTimeUnits (const std::string& sid)
2023-09-08T18:00:37,319         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:37,320   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T18:00:37,321   ./base/sbml/KineticLaw.cpp:465:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:37,321     465 |   if (&(sid) == NULL)
2023-09-08T18:00:37,322         |              ^
2023-09-08T18:00:37,323   ./base/sbml/KineticLaw.cpp:462:51: note: ‘sid’ declared here
2023-09-08T18:00:37,323     462 | KineticLaw::setSubstanceUnits (const std::string& sid)
2023-09-08T18:00:37,324         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:37,336   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2023-09-08T18:00:37,336   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:37,337    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2023-09-08T18:00:37,337         |                ^
2023-09-08T18:00:37,338   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2023-09-08T18:00:37,339    1032 | KineticLaw::removeParameter (const std::string& sid)
2023-09-08T18:00:37,339         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:37,340   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2023-09-08T18:00:37,340   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:37,341    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2023-09-08T18:00:37,342         |                ^
2023-09-08T18:00:37,342   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2023-09-08T18:00:37,343    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2023-09-08T18:00:37,344         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:37,370   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2023-09-08T18:00:37,371   ./base/sbml/KineticLaw.cpp:1612:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:37,371    1612 |   catch (SBMLConstructorException)
2023-09-08T18:00:37,372         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:37,373   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:37,374   ./base/sbml/KineticLaw.cpp:1628:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:37,375    1628 |   catch (SBMLConstructorException)
2023-09-08T18:00:37,375         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:37,910   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T18:00:37,911   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:37,912     363 |   if (&(formula) == NULL)
2023-09-08T18:00:37,912         |   ^~
2023-09-08T18:00:37,917   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T18:00:37,917   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:37,918     143 |   if (&rhs == NULL)
2023-09-08T18:00:37,919         |   ^~
2023-09-08T18:00:37,921   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T18:00:37,922   ./base/sbml/KineticLaw.cpp:437:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:37,923     437 |   if (&(sid) == NULL)
2023-09-08T18:00:37,924         |   ^~
2023-09-08T18:00:37,925   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T18:00:37,926   ./base/sbml/KineticLaw.cpp:465:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:37,926     465 |   if (&(sid) == NULL)
2023-09-08T18:00:37,927         |   ^~
2023-09-08T18:00:37,932   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T18:00:37,932   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:37,933     117 |   if (&orig == NULL)
2023-09-08T18:00:37,933         |   ^~
2023-09-08T18:00:43,830   In file included from ./base/sbml/ListOf.cpp:37:
2023-09-08T18:00:43,830   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:43,831      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:43,831         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:43,832   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:00:43,833                    from ./base/sbml/ListOf.cpp:34:
2023-09-08T18:00:43,833   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:43,834     117 |     struct unary_function
2023-09-08T18:00:43,834         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:44,434   ./base/sbml/ListOf.cpp:77:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:44,435      77 | struct Delete : public unary_function<SBase*, void>
2023-09-08T18:00:44,436         |                        ^~~~~~~~~~~~~~
2023-09-08T18:00:44,437   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:44,437     117 |     struct unary_function
2023-09-08T18:00:44,438         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:44,439   ./base/sbml/ListOf.cpp:95:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:44,440      95 | struct Clone : public unary_function<SBase*, SBase*>
2023-09-08T18:00:44,440         |                       ^~~~~~~~~~~~~~
2023-09-08T18:00:44,441   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:44,442     117 |     struct unary_function
2023-09-08T18:00:44,443         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:44,462   ./base/sbml/ListOf.cpp:459:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:44,463     459 | struct SetSBMLDocument : public unary_function<SBase*, void>
2023-09-08T18:00:44,464         |                                 ^~~~~~~~~~~~~~
2023-09-08T18:00:44,465   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:44,465     117 |     struct unary_function
2023-09-08T18:00:44,466         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:44,467   ./base/sbml/ListOf.cpp:471:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:44,467     471 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2023-09-08T18:00:44,468         |                                     ^~~~~~~~~~~~~~
2023-09-08T18:00:44,469   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:44,470     117 |     struct unary_function
2023-09-08T18:00:44,471         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:44,471   ./base/sbml/ListOf.cpp:543:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:44,472     543 | struct Write : public unary_function<SBase*, void>
2023-09-08T18:00:44,473         |                       ^~~~~~~~~~~~~~
2023-09-08T18:00:44,474   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:44,475     117 |     struct unary_function
2023-09-08T18:00:44,476         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:49,469   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:49,470                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:49,470                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:49,471                    from ./base/sbml/LocalParameter.cpp:42:
2023-09-08T18:00:49,471   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:49,472      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:49,473         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:49,473   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:49,474                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:49,474                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:49,475                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:49,475                    from ./base/sbml/LocalParameter.cpp:35:
2023-09-08T18:00:49,476   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:49,476     117 |     struct unary_function
2023-09-08T18:00:49,477         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:49,763   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T18:00:49,764   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:49,765     103 |   if (&orig == NULL)
2023-09-08T18:00:49,765         |             ^
2023-09-08T18:00:49,766   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2023-09-08T18:00:49,767     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2023-09-08T18:00:49,768         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:49,768   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T18:00:49,769   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:49,770     116 |   if (&orig == NULL)
2023-09-08T18:00:49,771         |             ^
2023-09-08T18:00:49,771   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2023-09-08T18:00:49,772     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2023-09-08T18:00:49,773         |                                ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:49,774   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T18:00:49,775   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:49,775     126 |   if (&rhs == NULL)
2023-09-08T18:00:49,776         |            ^
2023-09-08T18:00:49,777   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2023-09-08T18:00:49,777     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2023-09-08T18:00:49,778         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:49,779   ./base/sbml/LocalParameter.cpp: At global scope:
2023-09-08T18:00:49,779   ./base/sbml/LocalParameter.cpp:393:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:49,780     393 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T18:00:49,781         |                       ^~~~~~~~~~~~~~
2023-09-08T18:00:49,782   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:49,782     117 |     struct unary_function
2023-09-08T18:00:49,783         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:49,784   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T18:00:49,785   ./base/sbml/LocalParameter.cpp:418:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:49,785     418 |   if (&(sid) == NULL)
2023-09-08T18:00:49,786         |              ^
2023-09-08T18:00:49,786   ./base/sbml/LocalParameter.cpp:414:48: note: ‘sid’ declared here
2023-09-08T18:00:49,787     414 | ListOfLocalParameters::get (const std::string& sid) const
2023-09-08T18:00:49,787         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:49,788   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T18:00:49,789   ./base/sbml/LocalParameter.cpp:460:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:49,790     460 |   if (&(sid) != NULL)
2023-09-08T18:00:49,790         |              ^
2023-09-08T18:00:49,791   ./base/sbml/LocalParameter.cpp:455:51: note: ‘sid’ declared here
2023-09-08T18:00:49,791     455 | ListOfLocalParameters::remove (const std::string& sid)
2023-09-08T18:00:49,792         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:49,797   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2023-09-08T18:00:49,797   ./base/sbml/LocalParameter.cpp:540:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:49,798     540 |   catch (SBMLConstructorException)
2023-09-08T18:00:49,799         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:49,800   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:49,800   ./base/sbml/LocalParameter.cpp:556:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:49,801     556 |   catch (SBMLConstructorException)
2023-09-08T18:00:49,802         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:50,354   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T18:00:50,355   ./base/sbml/LocalParameter.cpp:418:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:50,355     418 |   if (&(sid) == NULL)
2023-09-08T18:00:50,356         |   ^~
2023-09-08T18:00:50,357   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T18:00:50,358   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:50,358     103 |   if (&orig == NULL)
2023-09-08T18:00:50,359         |   ^~
2023-09-08T18:00:50,360   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T18:00:50,360   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:50,361     116 |   if (&orig == NULL)
2023-09-08T18:00:50,362         |   ^~
2023-09-08T18:00:50,362   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T18:00:50,363   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:50,363     126 |   if (&rhs == NULL)
2023-09-08T18:00:50,364         |   ^~
2023-09-08T18:00:50,365   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T18:00:50,366   ./base/sbml/LocalParameter.cpp:460:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:50,367     460 |   if (&(sid) != NULL)
2023-09-08T18:00:50,367         |   ^~
2023-09-08T18:00:54,768   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:00:54,769                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:00:54,770                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:00:54,770                    from ./base/sbml/Model.cpp:41:
2023-09-08T18:00:54,771   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:00:54,771      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:00:54,772         |                           ^~~~~~~~~~~~~~
2023-09-08T18:00:54,772   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:00:54,773                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:00:54,774                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:00:54,774                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:00:54,775                    from ./base/sbml/Model.cpp:33:
2023-09-08T18:00:54,775   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:00:54,776     117 |     struct unary_function
2023-09-08T18:00:54,777         |            ^~~~~~~~~~~~~~
2023-09-08T18:00:55,146   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T18:00:55,146   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:00:55,147     175 |   if (&orig == NULL)
2023-09-08T18:00:55,148         |             ^
2023-09-08T18:00:55,149   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2023-09-08T18:00:55,149     160 | Model::Model(const Model& orig) :
2023-09-08T18:00:55,150         |              ~~~~~~~~~~~~~^~~~
2023-09-08T18:00:55,151   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T18:00:55,152   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:00:55,152     216 |   if (&rhs == NULL)
2023-09-08T18:00:55,153         |            ^
2023-09-08T18:00:55,154   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2023-09-08T18:00:55,154     214 | Model& Model::operator=(const Model& rhs)
2023-09-08T18:00:55,155         |                         ~~~~~~~~~~~~~^~~
2023-09-08T18:00:55,206   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T18:00:55,207   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:00:55,207     718 |   if (&(sid) == NULL)
2023-09-08T18:00:55,208         |              ^
2023-09-08T18:00:55,209   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2023-09-08T18:00:55,209     707 | Model::setId (const std::string& sid)
2023-09-08T18:00:55,210         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:00:55,211   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T18:00:55,212   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:00:55,212     743 |   if (&(name) == NULL)
2023-09-08T18:00:55,213         |               ^
2023-09-08T18:00:55,214   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2023-09-08T18:00:55,215     738 | Model::setName (const std::string& name)
2023-09-08T18:00:55,215         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:00:55,216   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T18:00:55,217   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,218     773 |   if (&(units) == NULL)
2023-09-08T18:00:55,219         |                ^
2023-09-08T18:00:55,219   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2023-09-08T18:00:55,220     771 | Model::setSubstanceUnits (const std::string& units)
2023-09-08T18:00:55,220         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,221   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T18:00:55,222   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,222     799 |   if (&(units) == NULL)
2023-09-08T18:00:55,223         |                ^
2023-09-08T18:00:55,223   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2023-09-08T18:00:55,224     797 | Model::setTimeUnits (const std::string& units)
2023-09-08T18:00:55,225         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,225   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T18:00:55,226   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,226     825 |   if (&(units) == NULL)
2023-09-08T18:00:55,227         |                ^
2023-09-08T18:00:55,227   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2023-09-08T18:00:55,228     823 | Model::setVolumeUnits (const std::string& units)
2023-09-08T18:00:55,229         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,229   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T18:00:55,230   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,231     851 |   if (&(units) == NULL)
2023-09-08T18:00:55,231         |                ^
2023-09-08T18:00:55,232   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2023-09-08T18:00:55,233     849 | Model::setAreaUnits (const std::string& units)
2023-09-08T18:00:55,234         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,235   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T18:00:55,235   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,236     877 |   if (&(units) == NULL)
2023-09-08T18:00:55,237         |                ^
2023-09-08T18:00:55,237   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2023-09-08T18:00:55,238     875 | Model::setLengthUnits (const std::string& units)
2023-09-08T18:00:55,239         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,240   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T18:00:55,240   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:00:55,241     903 |   if (&(units) == NULL)
2023-09-08T18:00:55,242         |                ^
2023-09-08T18:00:55,242   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2023-09-08T18:00:55,243     901 | Model::setExtentUnits (const std::string& units)
2023-09-08T18:00:55,244         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:00:55,245   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T18:00:55,245   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T18:00:55,246     929 |   if (&(id) == NULL)
2023-09-08T18:00:55,247         |             ^
2023-09-08T18:00:55,248   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2023-09-08T18:00:55,248     927 | Model::setConversionFactor (const std::string& id)
2023-09-08T18:00:55,249         |                             ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T18:00:55,438   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2023-09-08T18:00:55,439   ./base/sbml/Model.cpp:6317:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:55,439    6317 |   catch (SBMLConstructorException)
2023-09-08T18:00:55,440         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:55,441   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:00:55,441   ./base/sbml/Model.cpp:6333:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:00:55,442    6333 |   catch (SBMLConstructorException)
2023-09-08T18:00:55,443         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:00:56,238   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T18:00:56,239   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,239     216 |   if (&rhs == NULL)
2023-09-08T18:00:56,240         |   ^~
2023-09-08T18:00:56,256   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T18:00:56,256   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,257     718 |   if (&(sid) == NULL)
2023-09-08T18:00:56,257         |   ^~
2023-09-08T18:00:56,258   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T18:00:56,259   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,259     743 |   if (&(name) == NULL)
2023-09-08T18:00:56,260         |   ^~
2023-09-08T18:00:56,260   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T18:00:56,261   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,262     773 |   if (&(units) == NULL)
2023-09-08T18:00:56,262         |   ^~
2023-09-08T18:00:56,263   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T18:00:56,263   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,264     799 |   if (&(units) == NULL)
2023-09-08T18:00:56,265         |   ^~
2023-09-08T18:00:56,265   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T18:00:56,266   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,266     825 |   if (&(units) == NULL)
2023-09-08T18:00:56,267         |   ^~
2023-09-08T18:00:56,268   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T18:00:56,268   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,269     851 |   if (&(units) == NULL)
2023-09-08T18:00:56,269         |   ^~
2023-09-08T18:00:56,270   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T18:00:56,271   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,271     877 |   if (&(units) == NULL)
2023-09-08T18:00:56,272         |   ^~
2023-09-08T18:00:56,273   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T18:00:56,274   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,274     903 |   if (&(units) == NULL)
2023-09-08T18:00:56,275         |   ^~
2023-09-08T18:00:56,276   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T18:00:56,276   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,277     929 |   if (&(id) == NULL)
2023-09-08T18:00:56,277         |   ^~
2023-09-08T18:00:56,291   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T18:00:56,291   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:00:56,292     175 |   if (&orig == NULL)
2023-09-08T18:00:56,292         |   ^~
2023-09-08T18:01:11,475   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:11,475                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:01:11,476                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:01:11,476                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2023-09-08T18:01:11,477   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:11,477      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:11,478         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:11,479   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:11,479                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:11,480                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:11,480                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:11,481                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2023-09-08T18:01:11,481   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:11,482     117 |     struct unary_function
2023-09-08T18:01:11,483         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:11,791   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T18:01:11,792   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:11,792     163 |   catch (SBMLConstructorException)
2023-09-08T18:01:11,793         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:11,794   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:11,795   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:11,795     179 |   catch (SBMLConstructorException)
2023-09-08T18:01:11,796         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:15,920   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:15,921                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:01:15,922                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:01:15,922                    from ./base/sbml/Parameter.cpp:42:
2023-09-08T18:01:15,923   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:15,924      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:15,925         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:15,925   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:15,926                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:15,927                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:15,927                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:15,928                    from ./base/sbml/Parameter.cpp:35:
2023-09-08T18:01:15,929   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:15,930     117 |     struct unary_function
2023-09-08T18:01:15,930         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:16,226   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T18:01:16,227   ./base/sbml/Parameter.cpp:155:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:01:16,227     155 |   if (&orig == NULL)
2023-09-08T18:01:16,228         |             ^
2023-09-08T18:01:16,229   ./base/sbml/Parameter.cpp:152:39: note: ‘orig’ declared here
2023-09-08T18:01:16,229     152 | Parameter::Parameter(const Parameter& orig) :
2023-09-08T18:01:16,230         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:01:16,230   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T18:01:16,231   ./base/sbml/Parameter.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:01:16,231     179 |   if (&rhs == NULL)
2023-09-08T18:01:16,232         |            ^
2023-09-08T18:01:16,232   ./base/sbml/Parameter.cpp:177:50: note: ‘rhs’ declared here
2023-09-08T18:01:16,233     177 | Parameter& Parameter::operator=(const Parameter& rhs)
2023-09-08T18:01:16,233         |                                 ~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:16,236   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T18:01:16,237   ./base/sbml/Parameter.cpp:364:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:16,237     364 |   if (&(sid) == NULL)
2023-09-08T18:01:16,238         |              ^
2023-09-08T18:01:16,239   ./base/sbml/Parameter.cpp:353:38: note: ‘sid’ declared here
2023-09-08T18:01:16,239     353 | Parameter::setId (const std::string& sid)
2023-09-08T18:01:16,240         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:16,241   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T18:01:16,242   ./base/sbml/Parameter.cpp:389:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:01:16,243     389 |   if (&(name) == NULL)
2023-09-08T18:01:16,243         |               ^
2023-09-08T18:01:16,244   ./base/sbml/Parameter.cpp:384:40: note: ‘name’ declared here
2023-09-08T18:01:16,245     384 | Parameter::setName (const std::string& name)
2023-09-08T18:01:16,246         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:01:16,247   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T18:01:16,247   ./base/sbml/Parameter.cpp:431:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T18:01:16,248     431 |   if (&(units) == NULL)
2023-09-08T18:01:16,249         |                ^
2023-09-08T18:01:16,250   ./base/sbml/Parameter.cpp:429:41: note: ‘units’ declared here
2023-09-08T18:01:16,250     429 | Parameter::setUnits (const std::string& units)
2023-09-08T18:01:16,251         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:01:16,312   ./base/sbml/Parameter.cpp: At global scope:
2023-09-08T18:01:16,313   ./base/sbml/Parameter.cpp:1558:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:16,314    1558 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T18:01:16,315         |                       ^~~~~~~~~~~~~~
2023-09-08T18:01:16,315   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:16,316     117 |     struct unary_function
2023-09-08T18:01:16,317         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:16,318   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T18:01:16,319   ./base/sbml/Parameter.cpp:1581:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:16,320    1581 |   if (&(sid) == NULL)
2023-09-08T18:01:16,321         |              ^
2023-09-08T18:01:16,321   ./base/sbml/Parameter.cpp:1577:43: note: ‘sid’ declared here
2023-09-08T18:01:16,322    1577 | ListOfParameters::get (const std::string& sid) const
2023-09-08T18:01:16,322         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:16,324   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T18:01:16,325   ./base/sbml/Parameter.cpp:1608:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:16,326    1608 |   if (&(sid) != NULL)
2023-09-08T18:01:16,326         |              ^
2023-09-08T18:01:16,327   ./base/sbml/Parameter.cpp:1603:46: note: ‘sid’ declared here
2023-09-08T18:01:16,327    1603 | ListOfParameters::remove (const std::string& sid)
2023-09-08T18:01:16,328         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:16,334   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2023-09-08T18:01:16,335   ./base/sbml/Parameter.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:16,335    1688 |   catch (SBMLConstructorException)
2023-09-08T18:01:16,336         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:16,336   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:16,337   ./base/sbml/Parameter.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:16,338    1704 |   catch (SBMLConstructorException)
2023-09-08T18:01:16,338         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:16,946   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T18:01:16,947   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,947     155 |   if (&orig == NULL)
2023-09-08T18:01:16,948         |   ^~
2023-09-08T18:01:16,948   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T18:01:16,949   ./base/sbml/Parameter.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,950     179 |   if (&rhs == NULL)
2023-09-08T18:01:16,951         |   ^~
2023-09-08T18:01:16,952   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T18:01:16,952   ./base/sbml/Parameter.cpp:364:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,953     364 |   if (&(sid) == NULL)
2023-09-08T18:01:16,954         |   ^~
2023-09-08T18:01:16,955   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T18:01:16,956   ./base/sbml/Parameter.cpp:389:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,956     389 |   if (&(name) == NULL)
2023-09-08T18:01:16,957         |   ^~
2023-09-08T18:01:16,958   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T18:01:16,958   ./base/sbml/Parameter.cpp:431:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,959     431 |   if (&(units) == NULL)
2023-09-08T18:01:16,960         |   ^~
2023-09-08T18:01:16,962   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T18:01:16,962   ./base/sbml/Parameter.cpp:1581:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,963    1581 |   if (&(sid) == NULL)
2023-09-08T18:01:16,964         |   ^~
2023-09-08T18:01:16,976   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T18:01:16,977   ./base/sbml/Parameter.cpp:1608:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:16,977    1608 |   if (&(sid) != NULL)
2023-09-08T18:01:16,978         |   ^~
2023-09-08T18:01:25,943   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:25,944                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:01:25,944                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:01:25,945                    from ./base/sbml/Priority.cpp:45:
2023-09-08T18:01:25,946   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:25,946      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:25,947         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:25,947   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:25,948                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:25,948                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:25,949                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:25,950                    from ./base/sbml/Priority.cpp:33:
2023-09-08T18:01:25,950   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:25,951     117 |     struct unary_function
2023-09-08T18:01:25,951         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:26,242   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T18:01:26,243   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:01:26,243     100 |   if (&orig == NULL)
2023-09-08T18:01:26,244         |             ^
2023-09-08T18:01:26,245   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2023-09-08T18:01:26,246      96 | Priority::Priority (const Priority& orig) :
2023-09-08T18:01:26,247         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:01:26,247   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T18:01:26,248   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:01:26,249     122 |   if (&rhs == NULL)
2023-09-08T18:01:26,249         |            ^
2023-09-08T18:01:26,250   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2023-09-08T18:01:26,251     120 | Priority& Priority::operator=(const Priority& rhs)
2023-09-08T18:01:26,251         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:26,262   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2023-09-08T18:01:26,263   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:26,263     503 |   catch (SBMLConstructorException)
2023-09-08T18:01:26,264         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:26,265   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:26,265   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:26,266     519 |   catch (SBMLConstructorException)
2023-09-08T18:01:26,267         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:26,752   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T18:01:26,753   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:26,753     100 |   if (&orig == NULL)
2023-09-08T18:01:26,754         |   ^~
2023-09-08T18:01:26,755   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T18:01:26,755   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:26,756     122 |   if (&rhs == NULL)
2023-09-08T18:01:26,757         |   ^~
2023-09-08T18:01:30,614   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:30,615                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:01:30,615                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:01:30,616                    from ./base/sbml/RateRule.cpp:49:
2023-09-08T18:01:30,617   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:30,617      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:30,618         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:30,619   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:30,619                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:30,620                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:30,620                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:30,621                    from ./base/sbml/RateRule.cpp:34:
2023-09-08T18:01:30,622   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:30,622     117 |     struct unary_function
2023-09-08T18:01:30,623         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:30,913   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2023-09-08T18:01:30,914   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:30,914     154 |   catch (SBMLConstructorException)
2023-09-08T18:01:30,915         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:30,916   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:30,917   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:30,917     170 |   catch (SBMLConstructorException)
2023-09-08T18:01:30,918         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:34,896   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T18:01:34,896                    from ./base/sbml/Reaction.cpp:40:
2023-09-08T18:01:34,897   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:34,898      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:34,898         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:34,899   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:34,900                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:34,900                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:34,901                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:34,902                    from ./base/sbml/Reaction.cpp:33:
2023-09-08T18:01:34,902   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:34,903     117 |     struct unary_function
2023-09-08T18:01:34,903         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:35,271   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T18:01:35,272   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:01:35,272     185 |   if (&orig == NULL)
2023-09-08T18:01:35,273         |             ^
2023-09-08T18:01:35,274   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2023-09-08T18:01:35,275     178 | Reaction::Reaction (const Reaction& orig) :
2023-09-08T18:01:35,275         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:01:35,276   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T18:01:35,276   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:01:35,277     215 |   if (&rhs == NULL)
2023-09-08T18:01:35,277         |            ^
2023-09-08T18:01:35,278   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2023-09-08T18:01:35,278     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2023-09-08T18:01:35,279         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:35,293   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T18:01:35,294   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:35,295     549 |   if (&(sid) == NULL)
2023-09-08T18:01:35,295         |              ^
2023-09-08T18:01:35,296   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2023-09-08T18:01:35,296     538 | Reaction::setId (const std::string& sid)
2023-09-08T18:01:35,297         |                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:35,298   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T18:01:35,298   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:01:35,299     574 |   if (&(name) == NULL)
2023-09-08T18:01:35,299         |               ^
2023-09-08T18:01:35,300   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2023-09-08T18:01:35,301     569 | Reaction::setName (const std::string& name)
2023-09-08T18:01:35,301         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:01:35,302   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T18:01:35,303   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:35,304     665 |   if (&(sid) == NULL)
2023-09-08T18:01:35,304         |              ^
2023-09-08T18:01:35,305   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2023-09-08T18:01:35,306     663 | Reaction::setCompartment (const std::string& sid)
2023-09-08T18:01:35,307         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:35,362   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T18:01:35,363   ./base/sbml/Reaction.cpp:1933:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:35,364    1933 |   if (&(sid) == NULL)
2023-09-08T18:01:35,364         |              ^
2023-09-08T18:01:35,365   ./base/sbml/Reaction.cpp:1929:42: note: ‘sid’ declared here
2023-09-08T18:01:35,366    1929 | ListOfReactions::get (const std::string& sid) const
2023-09-08T18:01:35,366         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:35,368   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T18:01:35,368   ./base/sbml/Reaction.cpp:1960:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:35,369    1960 |   if (&(sid) != NULL)
2023-09-08T18:01:35,370         |              ^
2023-09-08T18:01:35,370   ./base/sbml/Reaction.cpp:1955:45: note: ‘sid’ declared here
2023-09-08T18:01:35,371    1955 | ListOfReactions::remove (const std::string& sid)
2023-09-08T18:01:35,372         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:35,376   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2023-09-08T18:01:35,377   ./base/sbml/Reaction.cpp:2038:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:35,377    2038 |   catch (SBMLConstructorException)
2023-09-08T18:01:35,378         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:35,378   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:35,379   ./base/sbml/Reaction.cpp:2054:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:35,379    2054 |   catch (SBMLConstructorException)
2023-09-08T18:01:35,380         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:36,007   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T18:01:36,008   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,008     215 |   if (&rhs == NULL)
2023-09-08T18:01:36,009         |   ^~
2023-09-08T18:01:36,014   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T18:01:36,014   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,015     549 |   if (&(sid) == NULL)
2023-09-08T18:01:36,015         |   ^~
2023-09-08T18:01:36,016   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T18:01:36,016   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,017     574 |   if (&(name) == NULL)
2023-09-08T18:01:36,018         |   ^~
2023-09-08T18:01:36,018   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T18:01:36,019   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,020     665 |   if (&(sid) == NULL)
2023-09-08T18:01:36,020         |   ^~
2023-09-08T18:01:36,021   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T18:01:36,022   ./base/sbml/Reaction.cpp:1933:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,023    1933 |   if (&(sid) == NULL)
2023-09-08T18:01:36,023         |   ^~
2023-09-08T18:01:36,027   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T18:01:36,027   ./base/sbml/Reaction.cpp:1960:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,028    1960 |   if (&(sid) != NULL)
2023-09-08T18:01:36,029         |   ^~
2023-09-08T18:01:36,032   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T18:01:36,033   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:36,034     185 |   if (&orig == NULL)
2023-09-08T18:01:36,034         |   ^~
2023-09-08T18:01:43,948   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:43,949                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:01:43,950                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:01:43,950                    from ./base/sbml/Rule.cpp:49:
2023-09-08T18:01:43,951   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:43,952      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:43,952         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:43,953   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:43,954                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:43,955                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:01:43,955                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:01:43,956                    from ./base/sbml/Rule.cpp:34:
2023-09-08T18:01:43,956   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:43,957     117 |     struct unary_function
2023-09-08T18:01:43,957         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:44,249   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T18:01:44,250   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:01:44,250     110 |   if (&orig == NULL)
2023-09-08T18:01:44,251         |             ^
2023-09-08T18:01:44,251   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2023-09-08T18:01:44,252     106 | Rule::Rule (const Rule& orig) :
2023-09-08T18:01:44,252         |             ~~~~~~~~~~~~^~~~
2023-09-08T18:01:44,253   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T18:01:44,254   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:01:44,254     137 |   if (&rhs == NULL)
2023-09-08T18:01:44,255         |            ^
2023-09-08T18:01:44,255   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2023-09-08T18:01:44,256     135 | Rule& Rule::operator=(const Rule& rhs)
2023-09-08T18:01:44,257         |                       ~~~~~~~~~~~~^~~
2023-09-08T18:01:44,264   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T18:01:44,265   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T18:01:44,265     326 |   if (&(formula) == NULL)
2023-09-08T18:01:44,266         |                  ^
2023-09-08T18:01:44,267   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2023-09-08T18:01:44,268     324 | Rule::setFormula (const std::string& formula)
2023-09-08T18:01:44,268         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:01:44,270   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T18:01:44,271   ./base/sbml/Rule.cpp:399:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:44,272     399 |   if (&(sid) == NULL)
2023-09-08T18:01:44,272         |              ^
2023-09-08T18:01:44,273   ./base/sbml/Rule.cpp:397:39: note: ‘sid’ declared here
2023-09-08T18:01:44,274     397 | Rule::setVariable (const std::string& sid)
2023-09-08T18:01:44,275         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:44,276   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T18:01:44,276   ./base/sbml/Rule.cpp:427:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2023-09-08T18:01:44,277     427 |   if (&(sname) == NULL)
2023-09-08T18:01:44,278         |                ^
2023-09-08T18:01:44,278   ./base/sbml/Rule.cpp:424:36: note: ‘sname’ declared here
2023-09-08T18:01:44,279     424 | Rule::setUnits (const std::string& sname)
2023-09-08T18:01:44,280         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:01:44,334   ./base/sbml/Rule.cpp: At global scope:
2023-09-08T18:01:44,335   ./base/sbml/Rule.cpp:1456:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:44,335    1456 | struct IdEqRule : public unary_function<SBase*, bool>
2023-09-08T18:01:44,336         |                          ^~~~~~~~~~~~~~
2023-09-08T18:01:44,337   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:44,338     117 |     struct unary_function
2023-09-08T18:01:44,339         |            ^~~~~~~~~~~~~~
2023-09-08T18:01:44,340   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T18:01:44,341   ./base/sbml/Rule.cpp:1481:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:44,342    1481 |   if (&(sid) == NULL)
2023-09-08T18:01:44,343         |              ^
2023-09-08T18:01:44,343   ./base/sbml/Rule.cpp:1477:38: note: ‘sid’ declared here
2023-09-08T18:01:44,344    1477 | ListOfRules::get (const std::string& sid) const
2023-09-08T18:01:44,345         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:44,346   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T18:01:44,347   ./base/sbml/Rule.cpp:1522:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:01:44,347    1522 |   if (&(sid) != NULL)
2023-09-08T18:01:44,348         |              ^
2023-09-08T18:01:44,349   ./base/sbml/Rule.cpp:1517:41: note: ‘sid’ declared here
2023-09-08T18:01:44,349    1517 | ListOfRules::remove (const std::string& sid)
2023-09-08T18:01:44,350         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:01:44,365   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2023-09-08T18:01:44,366   ./base/sbml/Rule.cpp:1711:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,366    1711 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,367         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,368   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:44,369   ./base/sbml/Rule.cpp:1727:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,370    1727 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,370         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,371   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2023-09-08T18:01:44,372   ./base/sbml/Rule.cpp:1743:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,373    1743 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,374         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,375   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:44,375   ./base/sbml/Rule.cpp:1759:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,376    1759 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,377         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,378   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2023-09-08T18:01:44,379   ./base/sbml/Rule.cpp:1775:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,379    1775 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,380         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,381   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:01:44,382   ./base/sbml/Rule.cpp:1791:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:01:44,382    1791 |   catch (SBMLConstructorException)
2023-09-08T18:01:44,383         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:01:44,976   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T18:01:44,976   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:44,977     326 |   if (&(formula) == NULL)
2023-09-08T18:01:44,978         |   ^~
2023-09-08T18:01:44,986   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T18:01:44,987   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:44,988     110 |   if (&orig == NULL)
2023-09-08T18:01:44,988         |   ^~
2023-09-08T18:01:44,989   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T18:01:44,989   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:44,991     137 |   if (&rhs == NULL)
2023-09-08T18:01:44,992         |   ^~
2023-09-08T18:01:44,994   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T18:01:44,995   ./base/sbml/Rule.cpp:399:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:44,996     399 |   if (&(sid) == NULL)
2023-09-08T18:01:44,998         |   ^~
2023-09-08T18:01:45,000   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T18:01:45,002   ./base/sbml/Rule.cpp:427:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:45,004     427 |   if (&(sname) == NULL)
2023-09-08T18:01:45,005         |   ^~
2023-09-08T18:01:45,005   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T18:01:45,006   ./base/sbml/Rule.cpp:1481:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:45,006    1481 |   if (&(sid) == NULL)
2023-09-08T18:01:45,007         |   ^~
2023-09-08T18:01:45,007   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T18:01:45,008   ./base/sbml/Rule.cpp:1522:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:01:45,009    1522 |   if (&(sid) != NULL)
2023-09-08T18:01:45,009         |   ^~
2023-09-08T18:01:55,610   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:01:55,611                    from ./base//sbml/Model.h:446,
2023-09-08T18:01:55,611                    from ./base/sbml/SBMLConvert.cpp:37:
2023-09-08T18:01:55,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:01:55,613      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:01:55,614         |                           ^~~~~~~~~~~~~~
2023-09-08T18:01:55,615   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:01:55,616                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:01:55,616                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T18:01:55,617                    from ./base/sbml/SBMLConvert.cpp:34:
2023-09-08T18:01:55,618   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:01:55,618     117 |     struct unary_function
2023-09-08T18:01:55,619         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:03,985   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:03,986                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:03,986                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:03,987                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:02:03,987                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T18:02:03,988                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T18:02:03,989                    from ./base/sbml/SBMLDocument.cpp:44:
2023-09-08T18:02:03,989   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:03,990      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:03,991         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:03,991   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:03,992                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:02:03,992                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:02:03,993                    from /usr/include/c++/12/ios:42,
2023-09-08T18:02:03,994                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:02:03,994                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:02:03,995                    from ./base/sbml/SBMLDocument.cpp:35:
2023-09-08T18:02:03,995   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:03,996     117 |     struct unary_function
2023-09-08T18:02:03,996         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:04,417   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T18:02:04,418   ./base/sbml/SBMLDocument.cpp:259:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:02:04,418     259 |   if (&orig == NULL)
2023-09-08T18:02:04,419         |             ^
2023-09-08T18:02:04,419   ./base/sbml/SBMLDocument.cpp:254:49: note: ‘orig’ declared here
2023-09-08T18:02:04,420     254 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2023-09-08T18:02:04,421         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:02:04,421   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T18:02:04,422   ./base/sbml/SBMLDocument.cpp:300:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:02:04,423     300 |   if (&rhs == NULL)
2023-09-08T18:02:04,423         |            ^
2023-09-08T18:02:04,424   ./base/sbml/SBMLDocument.cpp:298:59: note: ‘rhs’ declared here
2023-09-08T18:02:04,425     298 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2023-09-08T18:02:04,425         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:02:04,582   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2023-09-08T18:02:04,583   ./base/sbml/SBMLDocument.cpp:1992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:02:04,584    1992 |   catch (SBMLConstructorException)
2023-09-08T18:02:04,585         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:02:04,586   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2023-09-08T18:02:04,586   ./base/sbml/SBMLDocument.cpp:2008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:02:04,587    2008 |   catch (SBMLConstructorException)
2023-09-08T18:02:04,588         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:02:04,589   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2023-09-08T18:02:04,589   ./base/sbml/SBMLDocument.cpp:2024:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:02:04,590    2024 |   catch (SBMLConstructorException)
2023-09-08T18:02:04,591         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:02:05,389   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T18:02:05,390   ./base/sbml/SBMLDocument.cpp:300:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:05,390     300 |   if (&rhs == NULL)
2023-09-08T18:02:05,391         |   ^~
2023-09-08T18:02:05,423   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T18:02:05,423   ./base/sbml/SBMLDocument.cpp:259:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:05,424     259 |   if (&orig == NULL)
2023-09-08T18:02:05,425         |   ^~
2023-09-08T18:02:14,841   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:14,842                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:14,842                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:14,843                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:02:14,843                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:02:14,843                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:02:14,844                    from ./base/sbml/SBMLError.cpp:41:
2023-09-08T18:02:14,844   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:14,845      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:14,845         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:14,846   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:14,846                    from ./base/sbml/SBMLError.cpp:33:
2023-09-08T18:02:14,847   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:14,847     117 |     struct unary_function
2023-09-08T18:02:14,848         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:19,779   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:19,779      86 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T18:02:19,780         |                        ^~~~~~~~~~~~~~
2023-09-08T18:02:19,781   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:02:19,781                    from ./base/sbml/SBMLErrorLog.cpp:34:
2023-09-08T18:02:19,782   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:19,783     117 |     struct unary_function
2023-09-08T18:02:19,783         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:23,627   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:23,628                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:23,629                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:23,630                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:02:23,630                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:02:23,631                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:02:23,632                    from ./base/sbml/SBMLNamespaces.cpp:35:
2023-09-08T18:02:23,633   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:23,633      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:23,634         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:23,634   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:23,635                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:02:23,636                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:02:23,637                    from ./base/sbml/SBMLNamespaces.cpp:34:
2023-09-08T18:02:23,637   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:23,638     117 |     struct unary_function
2023-09-08T18:02:23,639         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:24,010   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T18:02:24,011   ./base/sbml/SBMLNamespaces.cpp:178:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:02:24,011     178 |   if (&orig == NULL)
2023-09-08T18:02:24,012         |             ^
2023-09-08T18:02:24,013   ./base/sbml/SBMLNamespaces.cpp:176:54: note: ‘orig’ declared here
2023-09-08T18:02:24,014     176 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2023-09-08T18:02:24,014         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:02:24,016   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T18:02:24,017   ./base/sbml/SBMLNamespaces.cpp:229:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:02:24,017     229 |   if (&rhs == NULL)
2023-09-08T18:02:24,018         |            ^
2023-09-08T18:02:24,018   ./base/sbml/SBMLNamespaces.cpp:227:49: note: ‘rhs’ declared here
2023-09-08T18:02:24,019     227 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2023-09-08T18:02:24,019         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:02:24,581   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T18:02:24,582   ./base/sbml/SBMLNamespaces.cpp:178:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:24,582     178 |   if (&orig == NULL)
2023-09-08T18:02:24,583         |   ^~
2023-09-08T18:02:24,583   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T18:02:24,584   ./base/sbml/SBMLNamespaces.cpp:229:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:24,584     229 |   if (&rhs == NULL)
2023-09-08T18:02:24,585         |   ^~
2023-09-08T18:02:29,688   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:29,689                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:29,690                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:29,690                    from ./base/sbml/SBMLReader.cpp:39:
2023-09-08T18:02:29,691   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:29,691      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:29,692         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:29,693   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:29,693                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:02:29,694                    from ./base/sbml/SBMLReader.cpp:33:
2023-09-08T18:02:29,694   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:29,695     117 |     struct unary_function
2023-09-08T18:02:29,696         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:29,983   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2023-09-08T18:02:29,983   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2023-09-08T18:02:29,984     139 |   if (&xml == NULL) return NULL;
2023-09-08T18:02:29,985         |            ^
2023-09-08T18:02:29,985   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2023-09-08T18:02:29,986     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2023-09-08T18:02:29,987         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:02:30,493   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:30,494     139 |   if (&xml == NULL) return NULL;
2023-09-08T18:02:30,495         |   ^~
2023-09-08T18:02:34,599   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:34,599                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:34,600                    from ./base/sbml/SBMLTransforms.cpp:33:
2023-09-08T18:02:34,601   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:34,601      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:34,602         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:34,602   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:34,603                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:02:34,604                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:02:34,604                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:02:34,605                    from ./base//sbml/SBase.h:145,
2023-09-08T18:02:34,605                    from ./base//sbml/SBMLTransforms.h:45:
2023-09-08T18:02:34,606   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:34,606     117 |     struct unary_function
2023-09-08T18:02:34,607         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:42,891   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:42,891                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:42,892                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:42,893                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:02:42,893                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:02:42,894                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2023-09-08T18:02:42,894   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:42,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:42,896         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:42,896   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:42,897                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:02:42,898                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:02:42,898                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:02:42,899   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:42,900     117 |     struct unary_function
2023-09-08T18:02:42,901         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:46,915   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:46,916                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:46,917                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:46,917                    from ./base/sbml/SBMLVisitor.cpp:34:
2023-09-08T18:02:46,918   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:46,919      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:46,919         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:46,920   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:46,920                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:02:46,921                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:02:46,921                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:02:46,922   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:46,923     117 |     struct unary_function
2023-09-08T18:02:46,923         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:50,889   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:02:50,889                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:02:50,890                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:02:50,891                    from ./base/sbml/SBMLWriter.cpp:42:
2023-09-08T18:02:50,891   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:50,892      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:02:50,893         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:50,894   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:50,894                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:02:50,895                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:02:50,895                    from /usr/include/c++/12/ios:42,
2023-09-08T18:02:50,896                    from ./base/sbml/SBMLWriter.cpp:33:
2023-09-08T18:02:50,897   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:50,897     117 |     struct unary_function
2023-09-08T18:02:50,898         |            ^~~~~~~~~~~~~~
2023-09-08T18:02:51,205   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T18:02:51,205   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:02:51,206      85 |   if (&(name) == NULL)
2023-09-08T18:02:51,207         |               ^
2023-09-08T18:02:51,207   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2023-09-08T18:02:51,208      83 | SBMLWriter::setProgramName (const std::string& name)
2023-09-08T18:02:51,208         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:02:51,209   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T18:02:51,210   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2023-09-08T18:02:51,210     109 |   if (&(version) == NULL)
2023-09-08T18:02:51,211         |                  ^
2023-09-08T18:02:51,212   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2023-09-08T18:02:51,212     107 | SBMLWriter::setProgramVersion (const std::string& version)
2023-09-08T18:02:51,213         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:02:51,768   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T18:02:51,769   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:51,769      85 |   if (&(name) == NULL)
2023-09-08T18:02:51,770         |   ^~
2023-09-08T18:02:51,771   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T18:02:51,772   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:02:51,772     109 |   if (&(version) == NULL)
2023-09-08T18:02:51,773         |   ^~
2023-09-08T18:02:55,507   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:02:55,508     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2023-09-08T18:02:55,508         |                           ^~~~~~~~~~~~~~
2023-09-08T18:02:55,509   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:02:55,510                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:02:55,510                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:02:55,511                    from /usr/include/c++/12/iomanip:40,
2023-09-08T18:02:55,512                    from ./base/sbml/SBO.cpp:33:
2023-09-08T18:02:55,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:02:55,513     117 |     struct unary_function
2023-09-08T18:02:55,514         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:04,019   In file included from ./base//sbml/Parameter.h:169,
2023-09-08T18:03:04,020                    from ./base//sbml/KineticLaw.h:169,
2023-09-08T18:03:04,021                    from ./base/sbml/SBase.cpp:46:
2023-09-08T18:03:04,022   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:04,023      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:04,023         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:04,024   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:04,024                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:03:04,025                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:03:04,026                    from /usr/include/c++/12/ios:42,
2023-09-08T18:03:04,026                    from /usr/include/c++/12/istream:38,
2023-09-08T18:03:04,027                    from /usr/include/c++/12/sstream:38,
2023-09-08T18:03:04,027                    from ./base/sbml/SBase.cpp:33:
2023-09-08T18:03:04,028   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:04,028     117 |     struct unary_function
2023-09-08T18:03:04,029         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:04,524   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:04,524      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2023-09-08T18:03:04,525         |                                    ^~~~~~~~~~~~~~
2023-09-08T18:03:04,526   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:04,526     117 |     struct unary_function
2023-09-08T18:03:04,527         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:04,528   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:04,528      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2023-09-08T18:03:04,529         |                                   ^~~~~~~~~~~~~~
2023-09-08T18:03:04,530   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:04,531     117 |     struct unary_function
2023-09-08T18:03:04,531         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:04,554   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T18:03:04,554   ./base/sbml/SBase.cpp:382:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:04,555     382 |   if (&orig == NULL)
2023-09-08T18:03:04,556         |             ^
2023-09-08T18:03:04,557   ./base/sbml/SBase.cpp:380:27: note: ‘orig’ declared here
2023-09-08T18:03:04,557     380 | SBase::SBase(const SBase& orig)
2023-09-08T18:03:04,558         |              ~~~~~~~~~~~~~^~~~
2023-09-08T18:03:04,566   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T18:03:04,567   ./base/sbml/SBase.cpp:495:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:04,568     495 |   if (&rhs == NULL)
2023-09-08T18:03:04,568         |            ^
2023-09-08T18:03:04,569   ./base/sbml/SBase.cpp:493:38: note: ‘rhs’ declared here
2023-09-08T18:03:04,570     493 | SBase& SBase::operator=(const SBase& rhs)
2023-09-08T18:03:04,570         |                         ~~~~~~~~~~~~~^~~
2023-09-08T18:03:04,590   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T18:03:04,591   ./base/sbml/SBase.cpp:1195:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T18:03:04,592    1195 |   if (&(metaid) == NULL)
2023-09-08T18:03:04,593         |                 ^
2023-09-08T18:03:04,594   ./base/sbml/SBase.cpp:1193:38: note: ‘metaid’ declared here
2023-09-08T18:03:04,594    1193 | SBase::setMetaId (const std::string& metaid)
2023-09-08T18:03:04,595         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:03:04,599   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T18:03:04,600   ./base/sbml/SBase.cpp:1380:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2023-09-08T18:03:04,601    1380 |   if (&(annotation) == NULL)
2023-09-08T18:03:04,601         |                     ^
2023-09-08T18:03:04,602   ./base/sbml/SBase.cpp:1378:42: note: ‘annotation’ declared here
2023-09-08T18:03:04,602    1378 | SBase::setAnnotation (const std::string& annotation)
2023-09-08T18:03:04,603         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:03:04,620   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T18:03:04,621   ./base/sbml/SBase.cpp:1777:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2023-09-08T18:03:04,622    1777 |   if (&(notes) == NULL)
2023-09-08T18:03:04,623         |                ^
2023-09-08T18:03:04,624   ./base/sbml/SBase.cpp:1774:36: note: ‘notes’ declared here
2023-09-08T18:03:04,625    1774 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2023-09-08T18:03:04,626         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:03:04,657   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T18:03:04,657   ./base/sbml/SBase.cpp:2427:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2023-09-08T18:03:04,658    2427 |   if (&(sboid) == NULL)
2023-09-08T18:03:04,659         |                ^
2023-09-08T18:03:04,659   ./base/sbml/SBase.cpp:2425:39: note: ‘sboid’ declared here
2023-09-08T18:03:04,660    2425 | SBase::setSBOTerm (const std::string &sboid)
2023-09-08T18:03:04,661         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:03:04,725   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2023-09-08T18:03:04,726   ./base/sbml/SBase.cpp:3739:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2023-09-08T18:03:04,726    3739 |   if (&pkgName == NULL)
2023-09-08T18:03:04,727         |                ^
2023-09-08T18:03:04,728   ./base/sbml/SBase.cpp:3738:22: note: ‘pkgName’ declared here
2023-09-08T18:03:04,728    3738 |   const std::string& pkgName = getPackageName();
2023-09-08T18:03:04,729         |                      ^~~~~~~
2023-09-08T18:03:04,924   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T18:03:04,924   ./base/sbml/SBase.cpp:6144:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:03:04,925    6144 |   if (&node == NULL) return;
2023-09-08T18:03:04,926         |             ^
2023-09-08T18:03:04,926   ./base/sbml/SBase.cpp:6142:22: note: ‘node’ declared here
2023-09-08T18:03:04,927    6142 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2023-09-08T18:03:04,928         |             ~~~~~~~~~^~~~
2023-09-08T18:03:05,737   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T18:03:05,738   ./base/sbml/SBase.cpp:2427:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,738    2427 |   if (&(sboid) == NULL)
2023-09-08T18:03:05,739         |   ^~
2023-09-08T18:03:05,745   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T18:03:05,746   ./base/sbml/SBase.cpp:1380:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,747    1380 |   if (&(annotation) == NULL)
2023-09-08T18:03:05,747         |   ^~
2023-09-08T18:03:05,768   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T18:03:05,769   ./base/sbml/SBase.cpp:1195:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,769    1195 |   if (&(metaid) == NULL)
2023-09-08T18:03:05,770         |   ^~
2023-09-08T18:03:05,814   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T18:03:05,815   ./base/sbml/SBase.cpp:495:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,815     495 |   if (&rhs == NULL)
2023-09-08T18:03:05,816         |   ^~
2023-09-08T18:03:05,827   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T18:03:05,828   ./base/sbml/SBase.cpp:382:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,828     382 |   if (&orig == NULL)
2023-09-08T18:03:05,829         |   ^~
2023-09-08T18:03:05,839   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T18:03:05,840   ./base/sbml/SBase.cpp:1777:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,841    1777 |   if (&(notes) == NULL)
2023-09-08T18:03:05,841         |   ^~
2023-09-08T18:03:05,845   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T18:03:05,846   ./base/sbml/SBase.cpp:6144:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:05,847    6144 |   if (&node == NULL) return;
2023-09-08T18:03:05,847         |   ^~
2023-09-08T18:03:24,172   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:03:24,173                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:03:24,173                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:03:24,174                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2023-09-08T18:03:24,174   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:24,175      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:24,176         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:24,176   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:24,177                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:03:24,178                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:03:24,178                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:03:24,179                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2023-09-08T18:03:24,179   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:24,180     117 |     struct unary_function
2023-09-08T18:03:24,181         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:24,489   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T18:03:24,490   ./base/sbml/SimpleSpeciesReference.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:24,490      98 |   if (&orig == NULL)
2023-09-08T18:03:24,491         |             ^
2023-09-08T18:03:24,492   ./base/sbml/SimpleSpeciesReference.cpp:95:78: note: ‘orig’ declared here
2023-09-08T18:03:24,492      95 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2023-09-08T18:03:24,493         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:24,494   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T18:03:24,495   ./base/sbml/SimpleSpeciesReference.cpp:116:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:24,495     116 |   if (&rhs == NULL)
2023-09-08T18:03:24,496         |            ^
2023-09-08T18:03:24,497   ./base/sbml/SimpleSpeciesReference.cpp:114:89: note: ‘rhs’ declared here
2023-09-08T18:03:24,497     114 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2023-09-08T18:03:24,498         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:24,499   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T18:03:24,499   ./base/sbml/SimpleSpeciesReference.cpp:216:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:24,500     216 |   if (&(sid) == NULL)
2023-09-08T18:03:24,500         |              ^
2023-09-08T18:03:24,501   ./base/sbml/SimpleSpeciesReference.cpp:214:56: note: ‘sid’ declared here
2023-09-08T18:03:24,501     214 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2023-09-08T18:03:24,502         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:24,502   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T18:03:24,503   ./base/sbml/SimpleSpeciesReference.cpp:238:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:24,503     238 |   if (&(sid) == NULL)
2023-09-08T18:03:24,504         |              ^
2023-09-08T18:03:24,505   ./base/sbml/SimpleSpeciesReference.cpp:236:51: note: ‘sid’ declared here
2023-09-08T18:03:24,505     236 | SimpleSpeciesReference::setId (const std::string& sid)
2023-09-08T18:03:24,506         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:24,507   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T18:03:24,507   ./base/sbml/SimpleSpeciesReference.cpp:302:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:03:24,508     302 |   if (&(name) == NULL)
2023-09-08T18:03:24,509         |               ^
2023-09-08T18:03:24,510   ./base/sbml/SimpleSpeciesReference.cpp:300:53: note: ‘name’ declared here
2023-09-08T18:03:24,510     300 | SimpleSpeciesReference::setName (const std::string& name)
2023-09-08T18:03:24,511         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:25,032   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T18:03:25,032   ./base/sbml/SimpleSpeciesReference.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:25,033      98 |   if (&orig == NULL)
2023-09-08T18:03:25,034         |   ^~
2023-09-08T18:03:25,034   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T18:03:25,035   ./base/sbml/SimpleSpeciesReference.cpp:116:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:25,036     116 |   if (&rhs == NULL)
2023-09-08T18:03:25,036         |   ^~
2023-09-08T18:03:25,037   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T18:03:25,037   ./base/sbml/SimpleSpeciesReference.cpp:216:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:25,038     216 |   if (&(sid) == NULL)
2023-09-08T18:03:25,039         |   ^~
2023-09-08T18:03:25,039   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T18:03:25,040   ./base/sbml/SimpleSpeciesReference.cpp:238:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:25,040     238 |   if (&(sid) == NULL)
2023-09-08T18:03:25,041         |   ^~
2023-09-08T18:03:25,042   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T18:03:25,042   ./base/sbml/SimpleSpeciesReference.cpp:302:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:25,043     302 |   if (&(name) == NULL)
2023-09-08T18:03:25,043         |   ^~
2023-09-08T18:03:29,973   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:03:29,973                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:03:29,974                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:03:29,974                    from ./base/sbml/Species.cpp:42:
2023-09-08T18:03:29,975   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:29,976      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:29,976         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:29,977   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:29,977                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:03:29,978                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:03:29,979                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:03:29,980                    from ./base/sbml/Species.cpp:35:
2023-09-08T18:03:29,980   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:29,981     117 |     struct unary_function
2023-09-08T18:03:29,982         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:30,281   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T18:03:30,282   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:30,283     167 |   if (&orig == NULL)
2023-09-08T18:03:30,283         |             ^
2023-09-08T18:03:30,284   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2023-09-08T18:03:30,285     164 | Species::Species(const Species& orig) :
2023-09-08T18:03:30,286         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:30,286   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T18:03:30,287   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:30,288     204 |   if (&rhs == NULL)
2023-09-08T18:03:30,288         |            ^
2023-09-08T18:03:30,289   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2023-09-08T18:03:30,290     202 | Species& Species::operator=(const Species& rhs)
2023-09-08T18:03:30,290         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,296   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T18:03:30,297   ./base/sbml/Species.cpp:619:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,298     619 |   if (&(sid) == NULL)
2023-09-08T18:03:30,298         |              ^
2023-09-08T18:03:30,299   ./base/sbml/Species.cpp:608:36: note: ‘sid’ declared here
2023-09-08T18:03:30,300     608 | Species::setId (const std::string& sid)
2023-09-08T18:03:30,301         |                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,301   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T18:03:30,302   ./base/sbml/Species.cpp:644:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:03:30,303     644 |   if (&(name) == NULL)
2023-09-08T18:03:30,304         |               ^
2023-09-08T18:03:30,304   ./base/sbml/Species.cpp:639:38: note: ‘name’ declared here
2023-09-08T18:03:30,305     639 | Species::setName (const std::string& name)
2023-09-08T18:03:30,306         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:30,306   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T18:03:30,307   ./base/sbml/Species.cpp:674:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,307     674 |   if (&(sid) == NULL)
2023-09-08T18:03:30,308         |              ^
2023-09-08T18:03:30,308   ./base/sbml/Species.cpp:672:45: note: ‘sid’ declared here
2023-09-08T18:03:30,309     672 | Species::setSpeciesType (const std::string& sid)
2023-09-08T18:03:30,310         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,310   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T18:03:30,311   ./base/sbml/Species.cpp:701:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,311     701 |   if (&(sid) == NULL)
2023-09-08T18:03:30,312         |              ^
2023-09-08T18:03:30,312   ./base/sbml/Species.cpp:699:45: note: ‘sid’ declared here
2023-09-08T18:03:30,313     699 | Species::setCompartment (const std::string& sid)
2023-09-08T18:03:30,314         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,314   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T18:03:30,315   ./base/sbml/Species.cpp:760:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,315     760 |   if (&(sid) == NULL)
2023-09-08T18:03:30,316         |              ^
2023-09-08T18:03:30,316   ./base/sbml/Species.cpp:758:48: note: ‘sid’ declared here
2023-09-08T18:03:30,317     758 | Species::setSubstanceUnits (const std::string& sid)
2023-09-08T18:03:30,318         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,319   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T18:03:30,319   ./base/sbml/Species.cpp:782:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,320     782 |   if (&(sid) == NULL)
2023-09-08T18:03:30,321         |              ^
2023-09-08T18:03:30,322   ./base/sbml/Species.cpp:780:50: note: ‘sid’ declared here
2023-09-08T18:03:30,322     780 | Species::setSpatialSizeUnits (const std::string& sid)
2023-09-08T18:03:30,323         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,324   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T18:03:30,325   ./base/sbml/Species.cpp:893:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,326     893 |   if (&(sid) == NULL)
2023-09-08T18:03:30,326         |              ^
2023-09-08T18:03:30,327   ./base/sbml/Species.cpp:891:50: note: ‘sid’ declared here
2023-09-08T18:03:30,328     891 | Species::setConversionFactor (const std::string& sid)
2023-09-08T18:03:30,328         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,393   ./base/sbml/Species.cpp: At global scope:
2023-09-08T18:03:30,393   ./base/sbml/Species.cpp:2015:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:30,394    2015 | struct IdEqS : public unary_function<SBase*, bool>
2023-09-08T18:03:30,395         |                       ^~~~~~~~~~~~~~
2023-09-08T18:03:30,396   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:30,397     117 |     struct unary_function
2023-09-08T18:03:30,397         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:30,399   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T18:03:30,400   ./base/sbml/Species.cpp:2038:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,400    2038 |   if (&(sid) == NULL)
2023-09-08T18:03:30,401         |              ^
2023-09-08T18:03:30,402   ./base/sbml/Species.cpp:2034:40: note: ‘sid’ declared here
2023-09-08T18:03:30,402    2034 | ListOfSpecies::get (const std::string& sid) const
2023-09-08T18:03:30,403         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,405   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T18:03:30,405   ./base/sbml/Species.cpp:2065:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:30,406    2065 |   if (&(sid) != NULL)
2023-09-08T18:03:30,406         |              ^
2023-09-08T18:03:30,407   ./base/sbml/Species.cpp:2060:43: note: ‘sid’ declared here
2023-09-08T18:03:30,408    2060 | ListOfSpecies::remove (const std::string& sid)
2023-09-08T18:03:30,408         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:30,414   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2023-09-08T18:03:30,415   ./base/sbml/Species.cpp:2143:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:30,416    2143 |   catch (SBMLConstructorException)
2023-09-08T18:03:30,416         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:30,417   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:03:30,418   ./base/sbml/Species.cpp:2159:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:30,418    2159 |   catch (SBMLConstructorException)
2023-09-08T18:03:30,419         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:31,040   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T18:03:31,041   ./base/sbml/Species.cpp:2038:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,042    2038 |   if (&(sid) == NULL)
2023-09-08T18:03:31,042         |   ^~
2023-09-08T18:03:31,045   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T18:03:31,046   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,046     167 |   if (&orig == NULL)
2023-09-08T18:03:31,047         |   ^~
2023-09-08T18:03:31,048   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T18:03:31,048   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,049     204 |   if (&rhs == NULL)
2023-09-08T18:03:31,050         |   ^~
2023-09-08T18:03:31,051   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T18:03:31,052   ./base/sbml/Species.cpp:619:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,053     619 |   if (&(sid) == NULL)
2023-09-08T18:03:31,053         |   ^~
2023-09-08T18:03:31,054   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T18:03:31,055   ./base/sbml/Species.cpp:644:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,055     644 |   if (&(name) == NULL)
2023-09-08T18:03:31,056         |   ^~
2023-09-08T18:03:31,057   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T18:03:31,058   ./base/sbml/Species.cpp:674:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,058     674 |   if (&(sid) == NULL)
2023-09-08T18:03:31,059         |   ^~
2023-09-08T18:03:31,060   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T18:03:31,060   ./base/sbml/Species.cpp:701:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,061     701 |   if (&(sid) == NULL)
2023-09-08T18:03:31,061         |   ^~
2023-09-08T18:03:31,062   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T18:03:31,062   ./base/sbml/Species.cpp:760:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,063     760 |   if (&(sid) == NULL)
2023-09-08T18:03:31,063         |   ^~
2023-09-08T18:03:31,064   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T18:03:31,064   ./base/sbml/Species.cpp:782:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,065     782 |   if (&(sid) == NULL)
2023-09-08T18:03:31,065         |   ^~
2023-09-08T18:03:31,066   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T18:03:31,067   ./base/sbml/Species.cpp:893:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,067     893 |   if (&(sid) == NULL)
2023-09-08T18:03:31,068         |   ^~
2023-09-08T18:03:31,073   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T18:03:31,074   ./base/sbml/Species.cpp:2065:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:31,074    2065 |   if (&(sid) != NULL)
2023-09-08T18:03:31,075         |   ^~
2023-09-08T18:03:41,717   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:03:41,718                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:03:41,718                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:03:41,719                    from ./base/sbml/SpeciesReference.cpp:48:
2023-09-08T18:03:41,719   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:41,720      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:41,721         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:41,722   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:41,722                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:03:41,723                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:03:41,724                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:03:41,724                    from ./base/sbml/SpeciesReference.cpp:35:
2023-09-08T18:03:41,725   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:41,725     117 |     struct unary_function
2023-09-08T18:03:41,726         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:42,043   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T18:03:42,044   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:42,044     129 |   if (&orig == NULL)
2023-09-08T18:03:42,045         |             ^
2023-09-08T18:03:42,046   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2023-09-08T18:03:42,046     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2023-09-08T18:03:42,047         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:42,049   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T18:03:42,049   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:42,050     157 |   if (&rhs == NULL)
2023-09-08T18:03:42,051         |            ^
2023-09-08T18:03:42,051   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2023-09-08T18:03:42,052     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2023-09-08T18:03:42,052         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:42,099   ./base/sbml/SpeciesReference.cpp: At global scope:
2023-09-08T18:03:42,100   ./base/sbml/SpeciesReference.cpp:1245:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:42,100    1245 | struct IdEqSSR : public unary_function<SBase*, bool>
2023-09-08T18:03:42,101         |                         ^~~~~~~~~~~~~~
2023-09-08T18:03:42,101   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:42,102     117 |     struct unary_function
2023-09-08T18:03:42,102         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:42,107   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T18:03:42,108   ./base/sbml/SpeciesReference.cpp:1287:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:42,109    1287 |   if (&(sid) == NULL)
2023-09-08T18:03:42,109         |              ^
2023-09-08T18:03:42,110   ./base/sbml/SpeciesReference.cpp:1283:50: note: ‘sid’ declared here
2023-09-08T18:03:42,110    1283 | ListOfSpeciesReferences::get (const std::string& sid) const
2023-09-08T18:03:42,111         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:42,115   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T18:03:42,116   ./base/sbml/SpeciesReference.cpp:1315:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:42,117    1315 |   if (&(sid) != NULL)
2023-09-08T18:03:42,117         |              ^
2023-09-08T18:03:42,118   ./base/sbml/SpeciesReference.cpp:1310:53: note: ‘sid’ declared here
2023-09-08T18:03:42,118    1310 | ListOfSpeciesReferences::remove (const std::string& sid)
2023-09-08T18:03:42,119         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:42,133   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T18:03:42,134   ./base/sbml/SpeciesReference.cpp:1484:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:42,134    1484 |   catch (SBMLConstructorException)
2023-09-08T18:03:42,135         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:42,136   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:03:42,137   ./base/sbml/SpeciesReference.cpp:1500:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:42,137    1500 |   catch (SBMLConstructorException)
2023-09-08T18:03:42,138         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:42,139   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2023-09-08T18:03:42,140   ./base/sbml/SpeciesReference.cpp:1516:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:42,140    1516 |   catch (SBMLConstructorException)
2023-09-08T18:03:42,141         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:42,142   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:03:42,143   ./base/sbml/SpeciesReference.cpp:1532:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:42,143    1532 |   catch (SBMLConstructorException)
2023-09-08T18:03:42,144         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:42,742   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T18:03:42,743   ./base/sbml/SpeciesReference.cpp:1287:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:42,743    1287 |   if (&(sid) == NULL)
2023-09-08T18:03:42,744         |   ^~
2023-09-08T18:03:42,747   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T18:03:42,748   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:42,749     129 |   if (&orig == NULL)
2023-09-08T18:03:42,749         |   ^~
2023-09-08T18:03:42,750   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T18:03:42,751   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:42,751     157 |   if (&rhs == NULL)
2023-09-08T18:03:42,752         |   ^~
2023-09-08T18:03:42,764   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T18:03:42,764   ./base/sbml/SpeciesReference.cpp:1315:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:42,765    1315 |   if (&(sid) != NULL)
2023-09-08T18:03:42,765         |   ^~
2023-09-08T18:03:49,065   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:03:49,066                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:03:49,067                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:03:49,067                    from ./base/sbml/SpeciesType.cpp:41:
2023-09-08T18:03:49,068   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:49,069      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:49,069         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:49,070   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:49,070                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:03:49,071                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:03:49,072                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:03:49,072                    from ./base/sbml/SpeciesType.cpp:33:
2023-09-08T18:03:49,073   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:49,074     117 |     struct unary_function
2023-09-08T18:03:49,074         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:49,366   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T18:03:49,367   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:49,367      92 |   if (&orig == NULL)
2023-09-08T18:03:49,368         |             ^
2023-09-08T18:03:49,369   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2023-09-08T18:03:49,370      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2023-09-08T18:03:49,370         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:49,371   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T18:03:49,372   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:49,373     109 |   if (&rhs == NULL)
2023-09-08T18:03:49,374         |            ^
2023-09-08T18:03:49,374   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2023-09-08T18:03:49,375     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2023-09-08T18:03:49,375         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:49,376   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T18:03:49,377   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:49,377     206 |   if (&(sid) == NULL)
2023-09-08T18:03:49,378         |              ^
2023-09-08T18:03:49,378   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2023-09-08T18:03:49,379     195 | SpeciesType::setId (const std::string& sid)
2023-09-08T18:03:49,380         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:49,380   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T18:03:49,381   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:03:49,382     231 |   if (&(name) == NULL)
2023-09-08T18:03:49,382         |               ^
2023-09-08T18:03:49,383   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2023-09-08T18:03:49,383     226 | SpeciesType::setName (const std::string& name)
2023-09-08T18:03:49,384         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:49,391   ./base/sbml/SpeciesType.cpp: At global scope:
2023-09-08T18:03:49,391   ./base/sbml/SpeciesType.cpp:542:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:49,392     542 | struct IdEqST : public unary_function<SBase*, bool>
2023-09-08T18:03:49,393         |                        ^~~~~~~~~~~~~~
2023-09-08T18:03:49,394   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:49,394     117 |     struct unary_function
2023-09-08T18:03:49,395         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:49,396   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T18:03:49,397   ./base/sbml/SpeciesType.cpp:567:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:49,397     567 |   if (&(sid) == NULL)
2023-09-08T18:03:49,398         |              ^
2023-09-08T18:03:49,399   ./base/sbml/SpeciesType.cpp:563:45: note: ‘sid’ declared here
2023-09-08T18:03:49,399     563 | ListOfSpeciesTypes::get (const std::string& sid) const
2023-09-08T18:03:49,400         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:49,401   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T18:03:49,402   ./base/sbml/SpeciesType.cpp:595:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:03:49,402     595 |   if (&(sid) != NULL)
2023-09-08T18:03:49,403         |              ^
2023-09-08T18:03:49,404   ./base/sbml/SpeciesType.cpp:590:48: note: ‘sid’ declared here
2023-09-08T18:03:49,405     590 | ListOfSpeciesTypes::remove (const std::string& sid)
2023-09-08T18:03:49,405         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:49,409   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2023-09-08T18:03:49,410   ./base/sbml/SpeciesType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:49,411     674 |   catch (SBMLConstructorException)
2023-09-08T18:03:49,412         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:49,412   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:03:49,413   ./base/sbml/SpeciesType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:49,414     690 |   catch (SBMLConstructorException)
2023-09-08T18:03:49,414         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:49,977   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T18:03:49,977   ./base/sbml/SpeciesType.cpp:567:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,978     567 |   if (&(sid) == NULL)
2023-09-08T18:03:49,978         |   ^~
2023-09-08T18:03:49,980   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T18:03:49,981   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,981      92 |   if (&orig == NULL)
2023-09-08T18:03:49,982         |   ^~
2023-09-08T18:03:49,983   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T18:03:49,983   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,984     109 |   if (&rhs == NULL)
2023-09-08T18:03:49,984         |   ^~
2023-09-08T18:03:49,985   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T18:03:49,986   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,986     206 |   if (&(sid) == NULL)
2023-09-08T18:03:49,987         |   ^~
2023-09-08T18:03:49,988   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T18:03:49,989   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,989     231 |   if (&(name) == NULL)
2023-09-08T18:03:49,990         |   ^~
2023-09-08T18:03:49,991   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T18:03:49,992   ./base/sbml/SpeciesType.cpp:595:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:49,993     595 |   if (&(sid) != NULL)
2023-09-08T18:03:49,994         |   ^~
2023-09-08T18:03:55,051   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:03:55,052                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:03:55,053                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:03:55,053                    from ./base/sbml/StoichiometryMath.cpp:46:
2023-09-08T18:03:55,054   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:03:55,055      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:03:55,055         |                           ^~~~~~~~~~~~~~
2023-09-08T18:03:55,056   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:03:55,057                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:03:55,057                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:03:55,058                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:03:55,059                    from ./base/sbml/StoichiometryMath.cpp:33:
2023-09-08T18:03:55,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:03:55,060     117 |     struct unary_function
2023-09-08T18:03:55,061         |            ^~~~~~~~~~~~~~
2023-09-08T18:03:55,349   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T18:03:55,350   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:03:55,351      98 |   if (&orig == NULL)
2023-09-08T18:03:55,351         |             ^
2023-09-08T18:03:55,352   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2023-09-08T18:03:55,352      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2023-09-08T18:03:55,353         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:03:55,354   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T18:03:55,354   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:03:55,355     120 |   if (&rhs == NULL)
2023-09-08T18:03:55,355         |            ^
2023-09-08T18:03:55,356   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2023-09-08T18:03:55,357     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2023-09-08T18:03:55,357         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:03:55,373   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2023-09-08T18:03:55,374   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:55,375     627 |   catch (SBMLConstructorException)
2023-09-08T18:03:55,375         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:55,376   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:03:55,377   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:03:55,377     643 |   catch (SBMLConstructorException)
2023-09-08T18:03:55,378         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:03:55,874   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T18:03:55,874   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:55,875      98 |   if (&orig == NULL)
2023-09-08T18:03:55,876         |   ^~
2023-09-08T18:03:55,877   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T18:03:55,878   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:03:55,878     120 |   if (&rhs == NULL)
2023-09-08T18:03:55,879         |   ^~
2023-09-08T18:04:04,099   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:04:04,100                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:04:04,100                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:04:04,101                    from ./base/sbml/Trigger.cpp:46:
2023-09-08T18:04:04,102   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:04:04,102      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:04:04,103         |                           ^~~~~~~~~~~~~~
2023-09-08T18:04:04,104   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:04:04,104                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:04:04,105                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:04:04,106                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:04:04,107                    from ./base/sbml/Trigger.cpp:33:
2023-09-08T18:04:04,107   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:04:04,108     117 |     struct unary_function
2023-09-08T18:04:04,108         |            ^~~~~~~~~~~~~~
2023-09-08T18:04:04,398   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T18:04:04,399   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:04,399     106 |   if (&orig == NULL)
2023-09-08T18:04:04,400         |             ^
2023-09-08T18:04:04,400   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2023-09-08T18:04:04,401     102 | Trigger::Trigger (const Trigger& orig) :
2023-09-08T18:04:04,401         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:04,403   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T18:04:04,404   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:04,404     131 |   if (&rhs == NULL)
2023-09-08T18:04:04,405         |            ^
2023-09-08T18:04:04,405   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2023-09-08T18:04:04,406     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2023-09-08T18:04:04,406         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:04,429   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2023-09-08T18:04:04,430   ./base/sbml/Trigger.cpp:700:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:04,430     700 |   catch (SBMLConstructorException)
2023-09-08T18:04:04,431         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:04,432   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:04:04,433   ./base/sbml/Trigger.cpp:716:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:04,433     716 |   catch (SBMLConstructorException)
2023-09-08T18:04:04,434         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:04,945   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T18:04:04,946   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:04,946     106 |   if (&orig == NULL)
2023-09-08T18:04:04,947         |   ^~
2023-09-08T18:04:04,947   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T18:04:04,948   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:04,948     131 |   if (&rhs == NULL)
2023-09-08T18:04:04,949         |   ^~
2023-09-08T18:04:09,336   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:04:09,337                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:04:09,337                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:04:09,338                    from ./base/sbml/Unit.cpp:41:
2023-09-08T18:04:09,339   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:04:09,339      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:04:09,340         |                           ^~~~~~~~~~~~~~
2023-09-08T18:04:09,341   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:04:09,341                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:04:09,342                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:04:09,343                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:04:09,343                    from ./base/sbml/Unit.cpp:33:
2023-09-08T18:04:09,344   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:04:09,345     117 |     struct unary_function
2023-09-08T18:04:09,345         |            ^~~~~~~~~~~~~~
2023-09-08T18:04:09,634   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T18:04:09,634   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:09,635     150 |   if (&orig == NULL)
2023-09-08T18:04:09,636         |             ^
2023-09-08T18:04:09,636   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2023-09-08T18:04:09,637     147 | Unit::Unit(const Unit& orig) :
2023-09-08T18:04:09,637         |            ~~~~~~~~~~~~^~~~
2023-09-08T18:04:09,638   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T18:04:09,639   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:09,639     179 |   if (&rhs == NULL)
2023-09-08T18:04:09,640         |            ^
2023-09-08T18:04:09,640   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2023-09-08T18:04:09,641     177 | Unit& Unit::operator=(const Unit& rhs)
2023-09-08T18:04:09,642         |                       ~~~~~~~~~~~~^~~
2023-09-08T18:04:09,741   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2023-09-08T18:04:09,742   ./base/sbml/Unit.cpp:2345:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:09,742    2345 |   catch (SBMLConstructorException)
2023-09-08T18:04:09,743         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:09,744   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:04:09,744   ./base/sbml/Unit.cpp:2361:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:09,745    2361 |   catch (SBMLConstructorException)
2023-09-08T18:04:09,746         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:10,345   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T18:04:10,346   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:10,346     150 |   if (&orig == NULL)
2023-09-08T18:04:10,347         |   ^~
2023-09-08T18:04:10,348   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T18:04:10,348   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:10,349     179 |   if (&rhs == NULL)
2023-09-08T18:04:10,350         |   ^~
2023-09-08T18:04:17,671   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:04:17,671                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:04:17,672                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:04:17,673                    from ./base/sbml/UnitDefinition.cpp:44:
2023-09-08T18:04:17,673   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:04:17,674      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:04:17,675         |                           ^~~~~~~~~~~~~~
2023-09-08T18:04:17,675   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:04:17,676                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:04:17,677                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:04:17,677                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T18:04:17,678                    from ./base/sbml/UnitDefinition.cpp:34:
2023-09-08T18:04:17,679   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:04:17,679     117 |     struct unary_function
2023-09-08T18:04:17,680         |            ^~~~~~~~~~~~~~
2023-09-08T18:04:17,986   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T18:04:17,986   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:17,987     104 |   if (&orig == NULL)
2023-09-08T18:04:17,988         |             ^
2023-09-08T18:04:17,988   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2023-09-08T18:04:17,989     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2023-09-08T18:04:17,990         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:17,992   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T18:04:17,992   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:17,993     123 |   if (&rhs == NULL)
2023-09-08T18:04:17,993         |            ^
2023-09-08T18:04:17,994   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2023-09-08T18:04:17,994     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2023-09-08T18:04:17,995         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:18,003   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T18:04:18,004   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:04:18,004     262 |   if (&(sid) == NULL)
2023-09-08T18:04:18,005         |              ^
2023-09-08T18:04:18,006   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2023-09-08T18:04:18,007     251 | UnitDefinition::setId (const std::string& sid)
2023-09-08T18:04:18,007         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:18,008   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T18:04:18,009   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:04:18,010     287 |   if (&(name) == NULL)
2023-09-08T18:04:18,011         |               ^
2023-09-08T18:04:18,012   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2023-09-08T18:04:18,013     282 | UnitDefinition::setName (const std::string& name)
2023-09-08T18:04:18,014         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:18,078   ./base/sbml/UnitDefinition.cpp: At global scope:
2023-09-08T18:04:18,079   ./base/sbml/UnitDefinition.cpp:1783:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:04:18,080    1783 | struct IdEqUD : public unary_function<SBase*, bool>
2023-09-08T18:04:18,080         |                        ^~~~~~~~~~~~~~
2023-09-08T18:04:18,081   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:04:18,082     117 |     struct unary_function
2023-09-08T18:04:18,082         |            ^~~~~~~~~~~~~~
2023-09-08T18:04:18,086   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T18:04:18,087   ./base/sbml/UnitDefinition.cpp:1808:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:04:18,087    1808 |   if (&(sid) == NULL)
2023-09-08T18:04:18,088         |              ^
2023-09-08T18:04:18,089   ./base/sbml/UnitDefinition.cpp:1804:48: note: ‘sid’ declared here
2023-09-08T18:04:18,090    1804 | ListOfUnitDefinitions::get (const std::string& sid) const
2023-09-08T18:04:18,090         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:18,095   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T18:04:18,096   ./base/sbml/UnitDefinition.cpp:1850:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:04:18,096    1850 |   if (&(sid) != NULL)
2023-09-08T18:04:18,097         |              ^
2023-09-08T18:04:18,097   ./base/sbml/UnitDefinition.cpp:1845:51: note: ‘sid’ declared here
2023-09-08T18:04:18,098    1845 | ListOfUnitDefinitions::remove (const std::string& sid)
2023-09-08T18:04:18,098         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:18,106   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2023-09-08T18:04:18,106   ./base/sbml/UnitDefinition.cpp:1928:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:18,107    1928 |   catch (SBMLConstructorException)
2023-09-08T18:04:18,107         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:18,108   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T18:04:18,109   ./base/sbml/UnitDefinition.cpp:1944:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T18:04:18,110    1944 |   catch (SBMLConstructorException)
2023-09-08T18:04:18,110         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:18,715   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T18:04:18,715   ./base/sbml/UnitDefinition.cpp:1808:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,716    1808 |   if (&(sid) == NULL)
2023-09-08T18:04:18,717         |   ^~
2023-09-08T18:04:18,719   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T18:04:18,720   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,721     123 |   if (&rhs == NULL)
2023-09-08T18:04:18,722         |   ^~
2023-09-08T18:04:18,724   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T18:04:18,725   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,726     262 |   if (&(sid) == NULL)
2023-09-08T18:04:18,726         |   ^~
2023-09-08T18:04:18,727   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T18:04:18,728   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,728     287 |   if (&(name) == NULL)
2023-09-08T18:04:18,729         |   ^~
2023-09-08T18:04:18,738   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T18:04:18,738   ./base/sbml/UnitDefinition.cpp:1850:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,739    1850 |   if (&(sid) != NULL)
2023-09-08T18:04:18,740         |   ^~
2023-09-08T18:04:18,745   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T18:04:18,745   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:18,746     104 |   if (&orig == NULL)
2023-09-08T18:04:18,747         |   ^~
2023-09-08T18:04:25,653   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T18:04:25,653   ./base/sbml/annotation/CVTerm.cpp:165:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:25,654     165 |   if (&orig == NULL)
2023-09-08T18:04:25,655         |             ^
2023-09-08T18:04:25,655   ./base/sbml/annotation/CVTerm.cpp:163:30: note: ‘orig’ declared here
2023-09-08T18:04:25,656     163 | CVTerm::CVTerm(const CVTerm& orig)
2023-09-08T18:04:25,656         |                ~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:25,657   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T18:04:25,658   ./base/sbml/annotation/CVTerm.cpp:200:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:25,658     200 |   if (&rhs == NULL)
2023-09-08T18:04:25,659         |            ^
2023-09-08T18:04:25,660   ./base/sbml/annotation/CVTerm.cpp:198:33: note: ‘rhs’ declared here
2023-09-08T18:04:25,660     198 | CVTerm::operator=(const CVTerm& rhs)
2023-09-08T18:04:25,661         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T18:04:25,663   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T18:04:25,663   ./base/sbml/annotation/CVTerm.cpp:328:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T18:04:25,664     328 |   if (&qualifier == NULL)
2023-09-08T18:04:25,665         |                  ^
2023-09-08T18:04:25,666   ./base/sbml/annotation/CVTerm.cpp:325:50: note: ‘qualifier’ declared here
2023-09-08T18:04:25,666     325 | CVTerm::setModelQualifierType(const std::string& qualifier)
2023-09-08T18:04:25,667         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:04:25,668   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T18:04:25,668   ./base/sbml/annotation/CVTerm.cpp:345:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T18:04:25,669     345 |   if (&qualifier == NULL)
2023-09-08T18:04:25,669         |                  ^
2023-09-08T18:04:25,670   ./base/sbml/annotation/CVTerm.cpp:342:55: note: ‘qualifier’ declared here
2023-09-08T18:04:25,671     342 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2023-09-08T18:04:25,671         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:04:25,672   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T18:04:25,673   ./base/sbml/annotation/CVTerm.cpp:465:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2023-09-08T18:04:25,674     465 |   if (&resource == NULL || resource.empty())
2023-09-08T18:04:25,675         |                 ^
2023-09-08T18:04:25,675   ./base/sbml/annotation/CVTerm.cpp:463:40: note: ‘resource’ declared here
2023-09-08T18:04:25,676     463 | CVTerm::addResource(const std::string& resource)
2023-09-08T18:04:25,677         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:04:26,101   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T18:04:26,101   ./base/sbml/annotation/CVTerm.cpp:328:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:26,102     328 |   if (&qualifier == NULL)
2023-09-08T18:04:26,103         |   ^~
2023-09-08T18:04:26,103   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T18:04:26,104   ./base/sbml/annotation/CVTerm.cpp:345:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:26,105     345 |   if (&qualifier == NULL)
2023-09-08T18:04:26,106         |   ^~
2023-09-08T18:04:26,107   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T18:04:26,107   ./base/sbml/annotation/CVTerm.cpp:165:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:26,108     165 |   if (&orig == NULL)
2023-09-08T18:04:26,108         |   ^~
2023-09-08T18:04:26,109   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T18:04:26,110   ./base/sbml/annotation/CVTerm.cpp:200:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:26,110     200 |   if (&rhs == NULL)
2023-09-08T18:04:26,111         |   ^~
2023-09-08T18:04:26,111   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T18:04:26,112   ./base/sbml/annotation/CVTerm.cpp:465:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:26,113     465 |   if (&resource == NULL || resource.empty())
2023-09-08T18:04:26,113         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,093   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T18:04:29,093   ./base/sbml/annotation/Date.cpp:80:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T18:04:29,094      80 |   if (&(date) == NULL)
2023-09-08T18:04:29,095         |               ^
2023-09-08T18:04:29,095   ./base/sbml/annotation/Date.cpp:77:32: note: ‘date’ declared here
2023-09-08T18:04:29,096      77 | Date::Date (const std::string& date) :
2023-09-08T18:04:29,096         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:29,097   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T18:04:29,098   ./base/sbml/annotation/Date.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:29,098      97 |   if (&orig == NULL)
2023-09-08T18:04:29,099         |             ^
2023-09-08T18:04:29,100   ./base/sbml/annotation/Date.cpp:95:24: note: ‘orig’ declared here
2023-09-08T18:04:29,100      95 | Date::Date(const Date& orig)
2023-09-08T18:04:29,101         |            ~~~~~~~~~~~~^~~~
2023-09-08T18:04:29,101   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T18:04:29,102   ./base/sbml/annotation/Date.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:29,103     125 |   if (&rhs == NULL)
2023-09-08T18:04:29,104         |            ^
2023-09-08T18:04:29,105   ./base/sbml/annotation/Date.cpp:123:35: note: ‘rhs’ declared here
2023-09-08T18:04:29,106     123 | Date& Date::operator=(const Date& rhs)
2023-09-08T18:04:29,106         |                       ~~~~~~~~~~~~^~~
2023-09-08T18:04:29,107   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T18:04:29,108   ./base/sbml/annotation/Date.cpp:395:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T18:04:29,109     395 |   if (&(date) == NULL)
2023-09-08T18:04:29,109         |               ^
2023-09-08T18:04:29,110   ./base/sbml/annotation/Date.cpp:389:43: note: ‘date’ declared here
2023-09-08T18:04:29,111     389 | Date::setDateAsString (const std::string& date)
2023-09-08T18:04:29,111         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:29,542   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T18:04:29,542   ./base/sbml/annotation/Date.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:29,543      97 |   if (&orig == NULL)
2023-09-08T18:04:29,544         |   ^~
2023-09-08T18:04:29,545   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T18:04:29,545   ./base/sbml/annotation/Date.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:29,547     125 |   if (&rhs == NULL)
2023-09-08T18:04:29,547         |   ^~
2023-09-08T18:04:29,548   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T18:04:29,548   ./base/sbml/annotation/Date.cpp:80:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:29,549      80 |   if (&(date) == NULL)
2023-09-08T18:04:29,549         |   ^~
2023-09-08T18:04:29,550   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T18:04:29,551   ./base/sbml/annotation/Date.cpp:395:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:29,552     395 |   if (&(date) == NULL)
2023-09-08T18:04:29,553         |   ^~
2023-09-08T18:04:29,755   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2023-09-08T18:04:29,756   ./base/sbml/annotation/Date.cpp:449:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T18:04:29,756     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T18:04:29,757         |                        ^~
2023-09-08T18:04:29,758   ./base/sbml/annotation/Date.cpp:449:20: note: directive argument in the range [10, 4294967295]
2023-09-08T18:04:29,758     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T18:04:29,759         |                    ^~~~~~~~
2023-09-08T18:04:29,759   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2023-09-08T18:04:29,760     449 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T18:04:29,760         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,761   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T18:04:29,762     455 |     sprintf(cdate, "%uT", mDay);
2023-09-08T18:04:29,762         |                       ^
2023-09-08T18:04:29,763   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T18:04:29,764     455 |     sprintf(cdate, "%uT", mDay);
2023-09-08T18:04:29,764         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,765   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T18:04:29,766     461 |     sprintf(cdate, "%u:", mHour);
2023-09-08T18:04:29,766         |                       ^
2023-09-08T18:04:29,767   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T18:04:29,768     461 |     sprintf(cdate, "%u:", mHour);
2023-09-08T18:04:29,768         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,769   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T18:04:29,770     467 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T18:04:29,770         |                       ^
2023-09-08T18:04:29,771   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T18:04:29,772     467 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T18:04:29,772         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,773   ./base/sbml/annotation/Date.cpp:473:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T18:04:29,774     473 |     sprintf(cdate, "%u", mSecond);
2023-09-08T18:04:29,774         |                       ^
2023-09-08T18:04:29,775   ./base/sbml/annotation/Date.cpp:473:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T18:04:29,776     473 |     sprintf(cdate, "%u", mSecond);
2023-09-08T18:04:29,777         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,777   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T18:04:29,778     492 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T18:04:29,778         |                         ^
2023-09-08T18:04:29,779   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T18:04:29,779     492 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T18:04:29,780         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:29,780   ./base/sbml/annotation/Date.cpp:498:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T18:04:29,781     498 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T18:04:29,781         |                         ^
2023-09-08T18:04:29,782   ./base/sbml/annotation/Date.cpp:498:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T18:04:29,783     498 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T18:04:29,783         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:04:32,425   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T18:04:32,426   ./base/sbml/annotation/ModelCreator.cpp:137:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:32,427     137 |   if (&orig == NULL)
2023-09-08T18:04:32,427         |             ^
2023-09-08T18:04:32,428   ./base/sbml/annotation/ModelCreator.cpp:135:48: note: ‘orig’ declared here
2023-09-08T18:04:32,429     135 | ModelCreator::ModelCreator(const ModelCreator& orig)
2023-09-08T18:04:32,430         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:32,431   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T18:04:32,432   ./base/sbml/annotation/ModelCreator.cpp:164:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:32,433     164 |   if (&rhs == NULL)
2023-09-08T18:04:32,434         |            ^
2023-09-08T18:04:32,434   ./base/sbml/annotation/ModelCreator.cpp:162:59: note: ‘rhs’ declared here
2023-09-08T18:04:32,435     162 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2023-09-08T18:04:32,436         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:32,438   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T18:04:32,439   ./base/sbml/annotation/ModelCreator.cpp:238:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:04:32,439     238 |   if (&(name) == NULL)
2023-09-08T18:04:32,440         |               ^
2023-09-08T18:04:32,441   ./base/sbml/annotation/ModelCreator.cpp:236:48: note: ‘name’ declared here
2023-09-08T18:04:32,442     236 | ModelCreator::setFamilyName(const std::string& name)
2023-09-08T18:04:32,442         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:32,443   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T18:04:32,444   ./base/sbml/annotation/ModelCreator.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:04:32,444     257 |   if (&(name) == NULL)
2023-09-08T18:04:32,445         |               ^
2023-09-08T18:04:32,446   ./base/sbml/annotation/ModelCreator.cpp:255:47: note: ‘name’ declared here
2023-09-08T18:04:32,447     255 | ModelCreator::setGivenName(const std::string& name)
2023-09-08T18:04:32,448         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:32,448   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T18:04:32,449   ./base/sbml/annotation/ModelCreator.cpp:276:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2023-09-08T18:04:32,449     276 |   if (&(email) == NULL)
2023-09-08T18:04:32,450         |                ^
2023-09-08T18:04:32,450   ./base/sbml/annotation/ModelCreator.cpp:274:43: note: ‘email’ declared here
2023-09-08T18:04:32,451     274 | ModelCreator::setEmail(const std::string& email)
2023-09-08T18:04:32,451         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:04:32,451   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T18:04:32,452   ./base/sbml/annotation/ModelCreator.cpp:292:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2023-09-08T18:04:32,452     292 |   if (&(organization) == NULL)
2023-09-08T18:04:32,453         |                       ^
2023-09-08T18:04:32,454   ./base/sbml/annotation/ModelCreator.cpp:290:50: note: ‘organization’ declared here
2023-09-08T18:04:32,454     290 | ModelCreator::setOrganization(const std::string& organization)
2023-09-08T18:04:32,455         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T18:04:32,866   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T18:04:32,866   ./base/sbml/annotation/ModelCreator.cpp:238:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,867     238 |   if (&(name) == NULL)
2023-09-08T18:04:32,867         |   ^~
2023-09-08T18:04:32,868   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T18:04:32,869   ./base/sbml/annotation/ModelCreator.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,869     257 |   if (&(name) == NULL)
2023-09-08T18:04:32,870         |   ^~
2023-09-08T18:04:32,870   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T18:04:32,871   ./base/sbml/annotation/ModelCreator.cpp:276:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,871     276 |   if (&(email) == NULL)
2023-09-08T18:04:32,872         |   ^~
2023-09-08T18:04:32,872   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T18:04:32,873   ./base/sbml/annotation/ModelCreator.cpp:292:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,874     292 |   if (&(organization) == NULL)
2023-09-08T18:04:32,874         |   ^~
2023-09-08T18:04:32,880   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T18:04:32,881   ./base/sbml/annotation/ModelCreator.cpp:137:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,882     137 |   if (&orig == NULL)
2023-09-08T18:04:32,882         |   ^~
2023-09-08T18:04:32,883   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T18:04:32,884   ./base/sbml/annotation/ModelCreator.cpp:164:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:32,884     164 |   if (&rhs == NULL)
2023-09-08T18:04:32,885         |   ^~
2023-09-08T18:04:35,765   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T18:04:35,766   ./base/sbml/annotation/ModelHistory.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:04:35,767      92 |   if (&orig == NULL)
2023-09-08T18:04:35,768         |             ^
2023-09-08T18:04:35,768   ./base/sbml/annotation/ModelHistory.cpp:90:48: note: ‘orig’ declared here
2023-09-08T18:04:35,769      90 | ModelHistory::ModelHistory(const ModelHistory& orig)
2023-09-08T18:04:35,769         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:04:35,772   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T18:04:35,772   ./base/sbml/annotation/ModelHistory.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:04:35,773     128 |   if (&rhs == NULL)
2023-09-08T18:04:35,773         |            ^
2023-09-08T18:04:35,774   ./base/sbml/annotation/ModelHistory.cpp:126:45: note: ‘rhs’ declared here
2023-09-08T18:04:35,775     126 | ModelHistory::operator=(const ModelHistory& rhs)
2023-09-08T18:04:35,775         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:04:36,200   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T18:04:36,201   ./base/sbml/annotation/ModelHistory.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:36,202      92 |   if (&orig == NULL)
2023-09-08T18:04:36,202         |   ^~
2023-09-08T18:04:36,203   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T18:04:36,204   ./base/sbml/annotation/ModelHistory.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:36,204     128 |   if (&rhs == NULL)
2023-09-08T18:04:36,205         |   ^~
2023-09-08T18:04:39,588   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:04:39,589                    from ./base//sbml/Model.h:446,
2023-09-08T18:04:39,590                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:39:
2023-09-08T18:04:39,590   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:04:39,591      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:04:39,592         |                           ^~~~~~~~~~~~~~
2023-09-08T18:04:39,593   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:04:39,594                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:04:39,594                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:04:39,595                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2023-09-08T18:04:39,596   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:04:39,597     117 |     struct unary_function
2023-09-08T18:04:39,597         |            ^~~~~~~~~~~~~~
2023-09-08T18:04:39,851   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T18:04:39,852   ./base/sbml/annotation/RDFAnnotationParser.cpp:72:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:04:39,852      72 |   if (&element == NULL || stream == NULL) return;
2023-09-08T18:04:39,853         |                ^
2023-09-08T18:04:39,854   ./base/sbml/annotation/RDFAnnotationParser.cpp:69:51: note: ‘element’ declared here
2023-09-08T18:04:39,855      69 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T18:04:39,855         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:04:40,455   ./base/sbml/annotation/RDFAnnotationParser.cpp:72:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:04:40,456      72 |   if (&element == NULL || stream == NULL) return;
2023-09-08T18:04:40,457         |                ^
2023-09-08T18:05:02,922   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T18:05:02,922   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:05:02,923     110 |   if (&orig == NULL)
2023-09-08T18:05:02,924         |             ^
2023-09-08T18:05:02,924   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2023-09-08T18:05:02,925     108 |   (const ConversionOption& orig)
2023-09-08T18:05:02,925         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:05:02,926   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T18:05:02,927   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:05:02,927     128 |   if (&rhs == NULL)
2023-09-08T18:05:02,928         |            ^
2023-09-08T18:05:02,928   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2023-09-08T18:05:02,929     126 | ConversionOption::operator=(const ConversionOption& rhs)
2023-09-08T18:05:02,930         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:05:03,392   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T18:05:03,393   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:03,393     110 |   if (&orig == NULL)
2023-09-08T18:05:03,394         |   ^~
2023-09-08T18:05:03,395   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T18:05:03,395   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:03,396     128 |   if (&rhs == NULL)
2023-09-08T18:05:03,396         |   ^~
2023-09-08T18:05:07,875   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T18:05:07,876   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:05:07,877      56 |   if (&orig == NULL)
2023-09-08T18:05:07,877         |             ^
2023-09-08T18:05:07,878   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2023-09-08T18:05:07,879      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2023-09-08T18:05:07,879         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:05:07,936   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T18:05:07,937   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:05:07,938      79 |   if (&rhs == NULL)
2023-09-08T18:05:07,938         |            ^
2023-09-08T18:05:07,939   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2023-09-08T18:05:07,940      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2023-09-08T18:05:07,940         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:05:07,951   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T18:05:07,952   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2023-09-08T18:05:07,953     231 |   if (&option == NULL) return;
2023-09-08T18:05:07,954         |               ^
2023-09-08T18:05:07,954   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2023-09-08T18:05:07,955     229 | ConversionProperties::addOption(const ConversionOption &option)
2023-09-08T18:05:07,955         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:05:08,549   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T18:05:08,550   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:08,550      56 |   if (&orig == NULL)
2023-09-08T18:05:08,551         |   ^~
2023-09-08T18:05:08,551   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T18:05:08,552   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:08,552      79 |   if (&rhs == NULL)
2023-09-08T18:05:08,553         |   ^~
2023-09-08T18:05:08,554   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T18:05:08,554   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:08,555     231 |   if (&option == NULL) return;
2023-09-08T18:05:08,556         |   ^~
2023-09-08T18:05:14,019   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:14,020                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:14,020                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:14,021                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:14,022                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:14,022                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T18:05:14,023                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2023-09-08T18:05:14,024   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:14,025      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:14,026         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:14,026   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:14,027                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:14,027                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:14,028                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T18:05:14,029   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:14,029     117 |     struct unary_function
2023-09-08T18:05:14,030         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:17,916   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:17,917                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:17,917                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:17,918                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:17,919                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:17,920                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2023-09-08T18:05:17,920   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:17,921      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:17,922         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:17,922   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:17,923                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T18:05:17,923   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:17,924     117 |     struct unary_function
2023-09-08T18:05:17,925         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:18,235   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T18:05:18,235   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:05:18,236      67 |   if (&orig == NULL)
2023-09-08T18:05:18,236         |             ^
2023-09-08T18:05:18,237   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2023-09-08T18:05:18,238      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2023-09-08T18:05:18,238         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:05:18,239   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T18:05:18,240   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:05:18,240     103 |   if (&rhs == NULL)
2023-09-08T18:05:18,241         |            ^
2023-09-08T18:05:18,242   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2023-09-08T18:05:18,243     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2023-09-08T18:05:18,243         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:05:18,722   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T18:05:18,723   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:18,724      67 |   if (&orig == NULL)
2023-09-08T18:05:18,724         |   ^~
2023-09-08T18:05:18,725   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T18:05:18,726   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:18,727     103 |   if (&rhs == NULL)
2023-09-08T18:05:18,727         |   ^~
2023-09-08T18:05:22,087   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:22,087                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:22,088                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:22,088                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:22,089                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:22,090                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2023-09-08T18:05:22,090                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2023-09-08T18:05:22,091   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:22,092      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:22,092         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:22,093   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T18:05:22,094                    from /usr/include/c++/12/vector:66,
2023-09-08T18:05:22,094                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2023-09-08T18:05:22,095   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:22,096     117 |     struct unary_function
2023-09-08T18:05:22,097         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:26,334   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:26,335                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:26,335                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:26,336                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:26,336                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:26,337                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T18:05:26,338                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2023-09-08T18:05:26,338   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:26,339      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:26,340         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:26,340   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:26,341                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:26,342                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:26,342                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T18:05:26,343   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:26,344     117 |     struct unary_function
2023-09-08T18:05:26,344         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:26,670   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:26,670   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:26,671     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T18:05:26,672         |              ^
2023-09-08T18:05:26,673   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2023-09-08T18:05:26,673     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:26,674         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:26,678   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2023-09-08T18:05:26,679   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2023-09-08T18:05:26,680     216 |           ->isSetMath(), &idsToSkip)
2023-09-08T18:05:26,681         |                          ^~~~~~~~~~
2023-09-08T18:05:26,681   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2023-09-08T18:05:26,682     153 |   IdList idsToSkip;
2023-09-08T18:05:26,683         |          ^~~~~~~~~
2023-09-08T18:05:27,175   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:27,175   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:27,176     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T18:05:27,177         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:30,986   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:30,987                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:30,988                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:30,989                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:30,989                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:30,990                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2023-09-08T18:05:30,990                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2023-09-08T18:05:30,991   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:30,991      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:30,992         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:30,992   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:30,993                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:30,994                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:30,994                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2023-09-08T18:05:30,995   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:30,995     117 |     struct unary_function
2023-09-08T18:05:30,996         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:31,317   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:31,317   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:31,318     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T18:05:31,319         |              ^
2023-09-08T18:05:31,319   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2023-09-08T18:05:31,320     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:31,321         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:31,977   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:31,977     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T18:05:31,978         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:36,510   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:36,511                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:36,512                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:36,512                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:36,513                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:36,514                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2023-09-08T18:05:36,514                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2023-09-08T18:05:36,515   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:36,516      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:36,516         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:36,517   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:36,518                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T18:05:36,518   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:36,519     117 |     struct unary_function
2023-09-08T18:05:36,520         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:36,837   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T18:05:36,837   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:05:36,838      91 |   if (&rhs == NULL)
2023-09-08T18:05:36,839         |            ^
2023-09-08T18:05:36,839   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2023-09-08T18:05:36,840      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2023-09-08T18:05:36,840         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:05:36,842   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:36,842   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:36,843     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T18:05:36,843         |              ^
2023-09-08T18:05:36,844   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2023-09-08T18:05:36,845     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:36,845         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:37,343   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T18:05:37,343   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:37,344      91 |   if (&rhs == NULL)
2023-09-08T18:05:37,345         |   ^~
2023-09-08T18:05:37,346   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:37,346   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:37,347     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T18:05:37,347         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:41,160   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:41,160                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:41,161                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:41,162                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:41,162                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:41,163                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2023-09-08T18:05:41,164                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2023-09-08T18:05:41,164   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:41,165      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:41,166         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:41,167   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:41,167                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:41,168                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:41,169                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2023-09-08T18:05:41,169   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:41,170     117 |     struct unary_function
2023-09-08T18:05:41,171         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:41,488   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:41,489   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:41,490     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T18:05:41,490         |              ^
2023-09-08T18:05:41,491   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2023-09-08T18:05:41,492     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:41,492         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:41,964   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:41,965     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T18:05:41,966         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:45,276   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:45,277                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:45,277                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:45,278                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:45,278                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:45,279                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2023-09-08T18:05:45,279                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2023-09-08T18:05:45,280   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:45,281      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:45,281         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:45,282   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:45,283                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:45,283                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:45,284                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2023-09-08T18:05:45,284   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:45,285     117 |     struct unary_function
2023-09-08T18:05:45,286         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:45,682   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T18:05:45,683   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:05:45,683      89 |   if (&rhs == NULL)
2023-09-08T18:05:45,684         |            ^
2023-09-08T18:05:45,685   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2023-09-08T18:05:45,686      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2023-09-08T18:05:45,686         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:05:45,687   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:45,688   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:45,689     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T18:05:45,689         |              ^
2023-09-08T18:05:45,690   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2023-09-08T18:05:45,691     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:45,692         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:46,268   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T18:05:46,269   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:46,269      89 |   if (&rhs == NULL)
2023-09-08T18:05:46,270         |   ^~
2023-09-08T18:05:46,271   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:46,271   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:46,272     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T18:05:46,272         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:51,303   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:51,303                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:51,303                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:51,304                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:51,304                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:51,305                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2023-09-08T18:05:51,305                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2023-09-08T18:05:51,306   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:51,307      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:51,307         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:51,308   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:51,309                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:51,310                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:51,310                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2023-09-08T18:05:51,311   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:51,311     117 |     struct unary_function
2023-09-08T18:05:51,312         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:51,646   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:51,647   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:51,647     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T18:05:51,648         |              ^
2023-09-08T18:05:51,649   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2023-09-08T18:05:51,649     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:51,650         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:52,177   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:52,178     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T18:05:52,179         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:05:55,928   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:05:55,929                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:05:55,930                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:05:55,930                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:05:55,931                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:05:55,931                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2023-09-08T18:05:55,932                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2023-09-08T18:05:55,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:05:55,933      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:05:55,934         |                           ^~~~~~~~~~~~~~
2023-09-08T18:05:55,934   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:05:55,935                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:05:55,935                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:05:55,936                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2023-09-08T18:05:55,937   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:05:55,937     117 |     struct unary_function
2023-09-08T18:05:55,938         |            ^~~~~~~~~~~~~~
2023-09-08T18:05:56,275   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:05:56,276   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:05:56,276     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T18:05:56,277         |              ^
2023-09-08T18:05:56,278   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2023-09-08T18:05:56,278     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:05:56,279         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:05:56,878   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:05:56,879     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T18:05:56,879         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:06:01,735   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:01,735                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:01,736                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:01,737                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:06:01,737                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:06:01,738                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2023-09-08T18:06:01,739                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2023-09-08T18:06:01,739   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:01,740      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:01,741         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:01,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:01,743                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:06:01,744                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:06:01,744                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2023-09-08T18:06:01,745   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:01,746     117 |     struct unary_function
2023-09-08T18:06:01,747         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:02,062   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:06:02,063   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:06:02,064     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T18:06:02,064         |              ^
2023-09-08T18:06:02,065   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2023-09-08T18:06:02,065     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:06:02,066         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:06:03,104   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:03,105     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T18:06:03,106         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:06:10,984   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:10,984                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:10,985                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:10,985                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:06:10,986                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:06:10,987                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2023-09-08T18:06:10,987                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2023-09-08T18:06:10,988   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:10,989      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:10,989         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:10,990   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:10,991                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:06:10,991                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:06:10,992                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2023-09-08T18:06:10,993   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:10,993     117 |     struct unary_function
2023-09-08T18:06:10,994         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:11,329   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T18:06:11,330   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:06:11,331      86 |   if (&rhs == NULL)
2023-09-08T18:06:11,331         |            ^
2023-09-08T18:06:11,332   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2023-09-08T18:06:11,333      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2023-09-08T18:06:11,333         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:11,336   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:06:11,337   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:132:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:06:11,337     132 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T18:06:11,338         |              ^
2023-09-08T18:06:11,339   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:130:74: note: ‘props’ declared here
2023-09-08T18:06:11,339     130 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:06:11,340         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:06:11,823   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T18:06:11,823   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:11,824      86 |   if (&rhs == NULL)
2023-09-08T18:06:11,825         |   ^~
2023-09-08T18:06:11,826   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:06:11,826   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:132:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:11,827     132 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T18:06:11,827         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:06:15,459   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:15,460                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:15,460                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:15,461                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:06:15,461                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:06:15,462                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2023-09-08T18:06:15,463                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2023-09-08T18:06:15,463   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:15,464      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:15,465         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:15,465   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:15,466                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:06:15,467                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:06:15,467                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2023-09-08T18:06:15,468   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:15,469     117 |     struct unary_function
2023-09-08T18:06:15,469         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:15,831   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T18:06:15,832   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:06:15,832      91 |   if (&rhs == NULL)
2023-09-08T18:06:15,833         |            ^
2023-09-08T18:06:15,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2023-09-08T18:06:15,835      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2023-09-08T18:06:15,835         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:15,836   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:06:15,837   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:06:15,838     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T18:06:15,839         |              ^
2023-09-08T18:06:15,839   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2023-09-08T18:06:15,840     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:06:15,840         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:06:16,636   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T18:06:16,637   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:16,637      91 |   if (&rhs == NULL)
2023-09-08T18:06:16,638         |   ^~
2023-09-08T18:06:16,639   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:06:16,639   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:16,640     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T18:06:16,640         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:06:23,772   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:23,773                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:23,773                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:23,774                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:06:23,774                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:06:23,775                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:06:23,776                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2023-09-08T18:06:23,776   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:23,777      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:23,778         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:23,778   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:23,779                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:06:23,780                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:06:23,780                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:44,
2023-09-08T18:06:23,781                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2023-09-08T18:06:23,782   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:23,782     117 |     struct unary_function
2023-09-08T18:06:23,783         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:27,732   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:27,732                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:27,733                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:27,734                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2023-09-08T18:06:27,735                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2023-09-08T18:06:27,735   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:27,736      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:27,737         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:27,737   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:27,738                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:06:27,739                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:06:27,739                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2023-09-08T18:06:27,740   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:27,741     117 |     struct unary_function
2023-09-08T18:06:27,742         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:28,067   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T18:06:28,067   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:06:28,068     119 |   if (&attributes == NULL) return;
2023-09-08T18:06:28,069         |                   ^
2023-09-08T18:06:28,069   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2023-09-08T18:06:28,070     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2023-09-08T18:06:28,071         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:06:28,071   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:06:28,072   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:06:28,073     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:28,073         |                   ^
2023-09-08T18:06:28,074   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2023-09-08T18:06:28,074     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T18:06:28,075         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:06:28,076   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T18:06:28,076     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:28,077         |                                                  ^
2023-09-08T18:06:28,078   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2023-09-08T18:06:28,079     133 |                                     const ExpectedAttributes& expectedAttributes)
2023-09-08T18:06:28,079         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:06:28,080   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2023-09-08T18:06:28,081   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:06:28,082     169 |   if (&stream == NULL) return;
2023-09-08T18:06:28,082         |               ^
2023-09-08T18:06:28,083   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2023-09-08T18:06:28,084     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2023-09-08T18:06:28,084         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:06:28,569   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:28,569     169 |   if (&stream == NULL) return;
2023-09-08T18:06:28,570         |   ^~
2023-09-08T18:06:28,573   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T18:06:28,573   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:28,574     119 |   if (&attributes == NULL) return;
2023-09-08T18:06:28,575         |   ^~
2023-09-08T18:06:28,576   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:06:28,577   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:28,577     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:28,578         |                   ^
2023-09-08T18:06:28,578   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:28,579     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:28,580         |                                                  ^
2023-09-08T18:06:32,345   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:32,346                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:32,347                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:32,347                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2023-09-08T18:06:32,348                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:59,
2023-09-08T18:06:32,349                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2023-09-08T18:06:32,349   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:32,350      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:32,350         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:32,351   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:32,352                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:06:32,352                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:06:32,353                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2023-09-08T18:06:32,354   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:32,354     117 |     struct unary_function
2023-09-08T18:06:32,355         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:32,680   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:06:32,681   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:06:32,682      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:32,683         |                   ^
2023-09-08T18:06:32,683   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2023-09-08T18:06:32,684      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2023-09-08T18:06:32,685         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:06:32,685   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T18:06:32,686      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:32,686         |                                                  ^
2023-09-08T18:06:32,687   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2023-09-08T18:06:32,688      89 |                                           const ExpectedAttributes& expectedAttributes)
2023-09-08T18:06:32,688         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:06:33,150   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:33,151      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:33,152         |                   ^
2023-09-08T18:06:33,152   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:33,153      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:33,154         |                                                  ^
2023-09-08T18:06:36,318   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:36,319                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:36,320                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:36,320                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:06:36,321                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:06:36,321                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2023-09-08T18:06:36,322   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:36,323      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:36,323         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:36,324   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:36,324                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:06:36,325                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:06:36,326                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:06:36,326   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:36,327     117 |     struct unary_function
2023-09-08T18:06:36,328         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:36,690   ./base/sbml/extension/SBMLExtension.cpp: In copy constructor ‘SBMLExtension::SBMLExtension(const SBMLExtension&)’:
2023-09-08T18:06:36,690   ./base/sbml/extension/SBMLExtension.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:06:36,691      76 |   if (&orig != NULL)
2023-09-08T18:06:36,692         |             ^
2023-09-08T18:06:36,693   ./base/sbml/extension/SBMLExtension.cpp:71:51: note: ‘orig’ declared here
2023-09-08T18:06:36,694      71 | SBMLExtension::SBMLExtension(const SBMLExtension& orig)
2023-09-08T18:06:36,694         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:06:36,695   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBMLExtension& SBMLExtension::operator=(const SBMLExtension&)’:
2023-09-08T18:06:36,696   ./base/sbml/extension/SBMLExtension.cpp:113:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:06:36,697     113 |   if (&orig != NULL && &orig != this)
2023-09-08T18:06:36,698         |             ^
2023-09-08T18:06:36,698   ./base/sbml/extension/SBMLExtension.cpp:111:47: note: ‘orig’ declared here
2023-09-08T18:06:36,699     111 | SBMLExtension::operator=(const SBMLExtension& orig)
2023-09-08T18:06:36,700         |                          ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:06:36,701   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T18:06:36,701   ./base/sbml/extension/SBMLExtension.cpp:254:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T18:06:36,702     254 |   if (&extPoint == NULL) return NULL;
2023-09-08T18:06:36,703         |                 ^
2023-09-08T18:06:36,704   ./base/sbml/extension/SBMLExtension.cpp:252:65: note: ‘extPoint’ declared here
2023-09-08T18:06:36,704     252 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2023-09-08T18:06:36,705         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:06:36,706   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T18:06:36,707   ./base/sbml/extension/SBMLExtension.cpp:325:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:06:36,707     325 |   if(&uri == NULL) return false;
2023-09-08T18:06:36,708         |           ^
2023-09-08T18:06:36,708   ./base/sbml/extension/SBMLExtension.cpp:323:47: note: ‘uri’ declared here
2023-09-08T18:06:36,709     323 | SBMLExtension::isSupported(const std::string& uri) const
2023-09-08T18:06:36,710         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:37,312   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T18:06:37,313   ./base/sbml/extension/SBMLExtension.cpp:254:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:37,314     254 |   if (&extPoint == NULL) return NULL;
2023-09-08T18:06:37,314         |   ^~
2023-09-08T18:06:37,324   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T18:06:37,325   ./base/sbml/extension/SBMLExtension.cpp:325:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:37,325     325 |   if(&uri == NULL) return false;
2023-09-08T18:06:37,326         |   ^~
2023-09-08T18:06:37,334   ./base/sbml/extension/SBMLExtension.cpp: In copy constructor ‘SBMLExtension::SBMLExtension(const SBMLExtension&)’:
2023-09-08T18:06:37,335   ./base/sbml/extension/SBMLExtension.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:37,335      76 |   if (&orig != NULL)
2023-09-08T18:06:37,336         |   ^~
2023-09-08T18:06:37,337   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBMLExtension& SBMLExtension::operator=(const SBMLExtension&)’:
2023-09-08T18:06:37,338   ./base/sbml/extension/SBMLExtension.cpp:113:13: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:37,339     113 |   if (&orig != NULL && &orig != this)
2023-09-08T18:06:37,339         |             ^
2023-09-08T18:06:43,518   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:43,519                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:43,520                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:43,520                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:06:43,521                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:06:43,522                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:06:43,522                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2023-09-08T18:06:43,523   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:43,524      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:43,524         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:43,525   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:43,526                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:06:43,526                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:06:43,527                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2023-09-08T18:06:43,528   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:43,528     117 |     struct unary_function
2023-09-08T18:06:43,529         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:47,500   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:47,501                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:47,501                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:47,502                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:06:47,502                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:06:47,503                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:06:47,503                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2023-09-08T18:06:47,504   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:47,504      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:47,505         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:47,506   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:47,506                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:06:47,507                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:06:47,507                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:06:47,508   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:47,508     117 |     struct unary_function
2023-09-08T18:06:47,509         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:47,897   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T18:06:47,898   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:06:47,899     103 |   if (&orig != NULL)
2023-09-08T18:06:47,900         |             ^
2023-09-08T18:06:47,901   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2023-09-08T18:06:47,901     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2023-09-08T18:06:47,902         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:06:48,019   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T18:06:48,020   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:06:48,021     221 |   if(&uri == NULL) return NULL;
2023-09-08T18:06:48,021         |           ^
2023-09-08T18:06:48,022   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2023-09-08T18:06:48,023     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2023-09-08T18:06:48,023         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:48,037   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T18:06:48,038   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T18:06:48,038     245 |   if (&extPoint != NULL)
2023-09-08T18:06:48,039         |                 ^
2023-09-08T18:06:48,040   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2023-09-08T18:06:48,040     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2023-09-08T18:06:48,041         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:06:48,042   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T18:06:48,043   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:06:48,044     272 |   if (&uri != NULL)
2023-09-08T18:06:48,045         |            ^
2023-09-08T18:06:48,045   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2023-09-08T18:06:48,046     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2023-09-08T18:06:48,046         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:48,047   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T18:06:48,048   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T18:06:48,048     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T18:06:48,049         |                ^
2023-09-08T18:06:48,049   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2023-09-08T18:06:48,050     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T18:06:48,051         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:06:48,051   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:06:48,052     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T18:06:48,053         |                                ^
2023-09-08T18:06:48,053   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2023-09-08T18:06:48,054     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T18:06:48,055         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:48,055   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T18:06:48,056   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T18:06:48,057     347 |   if (&extPoint == NULL) return 0;
2023-09-08T18:06:48,057         |                 ^
2023-09-08T18:06:48,058   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2023-09-08T18:06:48,059     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2023-09-08T18:06:48,060         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:06:48,060   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2023-09-08T18:06:48,061   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2023-09-08T18:06:48,062     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2023-09-08T18:06:48,062         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T18:06:48,931   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T18:06:48,931   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,932     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T18:06:48,933         |                ^
2023-09-08T18:06:48,933   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,934     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T18:06:48,934         |                                ^
2023-09-08T18:06:48,935   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T18:06:48,935   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,936     347 |   if (&extPoint == NULL) return 0;
2023-09-08T18:06:48,937         |   ^~
2023-09-08T18:06:48,937   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T18:06:48,938   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,938     245 |   if (&extPoint != NULL)
2023-09-08T18:06:48,939         |   ^~
2023-09-08T18:06:48,939   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T18:06:48,940   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,940     272 |   if (&uri != NULL)
2023-09-08T18:06:48,941         |   ^~
2023-09-08T18:06:48,944   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T18:06:48,945   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,945     221 |   if(&uri == NULL) return NULL;
2023-09-08T18:06:48,946         |   ^~
2023-09-08T18:06:48,949   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T18:06:48,949   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:48,950     103 |   if (&orig != NULL)
2023-09-08T18:06:48,950         |   ^~
2023-09-08T18:06:53,617   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T18:06:53,617   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T18:06:53,618     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,618         |            ^
2023-09-08T18:06:53,619   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:44: note: ‘lhs’ declared here
2023-09-08T18:06:53,620     114 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T18:06:53,620         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:53,621   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:06:53,622     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,622         |                            ^
2023-09-08T18:06:53,623   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:76: note: ‘rhs’ declared here
2023-09-08T18:06:53,624     114 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T18:06:53,624         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:53,625   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T18:06:53,626   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T18:06:53,626     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,627         |            ^
2023-09-08T18:06:53,627   ./base/sbml/extension/SBaseExtensionPoint.cpp:140:43: note: ‘lhs’ declared here
2023-09-08T18:06:53,628     140 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T18:06:53,628         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:53,629   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:06:53,629     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,630         |                            ^
2023-09-08T18:06:53,631   ./base/sbml/extension/SBaseExtensionPoint.cpp:140:75: note: ‘rhs’ declared here
2023-09-08T18:06:53,631     140 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T18:06:53,632         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:06:53,959   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T18:06:53,960   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:53,961     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,961         |            ^
2023-09-08T18:06:53,962   ./base/sbml/extension/SBaseExtensionPoint.cpp:116:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:53,963     116 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,963         |                            ^
2023-09-08T18:06:53,964   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T18:06:53,965   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:53,966     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,967         |            ^
2023-09-08T18:06:53,967   ./base/sbml/extension/SBaseExtensionPoint.cpp:142:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:53,968     142 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T18:06:53,969         |                            ^
2023-09-08T18:06:57,324   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:06:57,324                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:06:57,325                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:06:57,326                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:06:57,326                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2023-09-08T18:06:57,327   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:06:57,328      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:06:57,328         |                           ^~~~~~~~~~~~~~
2023-09-08T18:06:57,329   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:06:57,330                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:06:57,330                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:06:57,331                    from ./base//sbml/extension/SBasePlugin.h:60:
2023-09-08T18:06:57,332   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:06:57,333     117 |     struct unary_function
2023-09-08T18:06:57,333         |            ^~~~~~~~~~~~~~
2023-09-08T18:06:57,726   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:06:57,726   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:06:57,727     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:57,727         |                   ^
2023-09-08T18:06:57,728   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2023-09-08T18:06:57,728     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T18:06:57,729         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:06:57,729   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T18:06:57,730     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:57,730         |                                                  ^
2023-09-08T18:06:57,731   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2023-09-08T18:06:57,731     576 |                              const ExpectedAttributes& expectedAttributes)
2023-09-08T18:06:57,732         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:06:57,735   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T18:06:57,735   ./base/sbml/extension/SBasePlugin.cpp:693:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:06:57,736     693 |   if(&element == NULL) return;
2023-09-08T18:06:57,737         |               ^
2023-09-08T18:06:57,737   ./base/sbml/extension/SBasePlugin.cpp:688:51: note: ‘element’ declared here
2023-09-08T18:06:57,738     688 | SBasePlugin::logUnknownElement(const std::string &element,
2023-09-08T18:06:57,739         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:06:57,746   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T18:06:57,747   ./base/sbml/extension/SBasePlugin.cpp:726:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:06:57,748     726 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:57,749         |                  ^
2023-09-08T18:06:57,749   ./base/sbml/extension/SBasePlugin.cpp:720:53: note: ‘attribute’ declared here
2023-09-08T18:06:57,750     720 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2023-09-08T18:06:57,750         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:06:57,751   ./base/sbml/extension/SBasePlugin.cpp:726:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:06:57,752     726 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:57,752         |                                      ^
2023-09-08T18:06:57,753   ./base/sbml/extension/SBasePlugin.cpp:724:53: note: ‘element’ declared here
2023-09-08T18:06:57,754     724 |                                  const std::string& element)
2023-09-08T18:06:57,754         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:06:57,760   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T18:06:57,761   ./base/sbml/extension/SBasePlugin.cpp:772:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:06:57,762     772 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:57,763         |                  ^
2023-09-08T18:06:57,763   ./base/sbml/extension/SBasePlugin.cpp:765:48: note: ‘attribute’ declared here
2023-09-08T18:06:57,764     765 | SBasePlugin::logEmptyString(const std::string &attribute,
2023-09-08T18:06:57,764         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:06:57,764   ./base/sbml/extension/SBasePlugin.cpp:772:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:06:57,765     772 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:57,765         |                                      ^
2023-09-08T18:06:57,766   ./base/sbml/extension/SBasePlugin.cpp:769:56: note: ‘element’ declared here
2023-09-08T18:06:57,766     769 |                                     const std::string& element)
2023-09-08T18:06:57,767         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:06:58,314   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:06:58,315   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,315     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:58,316         |                   ^
2023-09-08T18:06:58,316   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,317     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:06:58,318         |                                                  ^
2023-09-08T18:06:58,320   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T18:06:58,320   ./base/sbml/extension/SBasePlugin.cpp:693:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,321     693 |   if(&element == NULL) return;
2023-09-08T18:06:58,321         |   ^~
2023-09-08T18:06:58,322   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T18:06:58,322   ./base/sbml/extension/SBasePlugin.cpp:726:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,323     726 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:58,324         |                  ^
2023-09-08T18:06:58,324   ./base/sbml/extension/SBasePlugin.cpp:726:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,325     726 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:58,325         |                                      ^
2023-09-08T18:06:58,326   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T18:06:58,327   ./base/sbml/extension/SBasePlugin.cpp:772:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,327     772 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:58,328         |                  ^
2023-09-08T18:06:58,329   ./base/sbml/extension/SBasePlugin.cpp:772:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:06:58,329     772 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:06:58,330         |                                      ^
2023-09-08T18:07:03,092   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:03,093                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:07:03,094                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:07:03,094                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:07:03,095                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2023-09-08T18:07:03,095   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:03,096      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:03,096         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:03,097   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:03,097                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:07:03,098                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:07:03,098                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:07:03,099   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:03,099     117 |     struct unary_function
2023-09-08T18:07:03,100         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:03,411   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2023-09-08T18:07:03,412   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:07:03,412     147 |   if (&uri == NULL) return false;
2023-09-08T18:07:03,413         |            ^
2023-09-08T18:07:03,413   ./base/sbml/extension/SBasePluginCreatorBase.cpp:145:56: note: ‘uri’ declared here
2023-09-08T18:07:03,414     145 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2023-09-08T18:07:03,415         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:07:03,901   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:03,902     147 |   if (&uri == NULL) return false;
2023-09-08T18:07:03,902         |   ^~
2023-09-08T18:07:07,497   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:07,497                    from ./base//sbml/Model.h:446,
2023-09-08T18:07:07,498                    from ./base/sbml/math/ASTNode.cpp:44:
2023-09-08T18:07:07,499   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:07,499      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:07,500         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:07,501   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:07,501                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:07:07,502                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T18:07:07,503                    from ./base/sbml/math/ASTNode.cpp:41:
2023-09-08T18:07:07,504   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:07,504     117 |     struct unary_function
2023-09-08T18:07:07,505         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:17,063   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:17,064                    from ./base//sbml/Model.h:446,
2023-09-08T18:07:17,065                    from L3Parser.ypp:83:
2023-09-08T18:07:17,066   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:17,066      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:17,067         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:17,068   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:17,068                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:07:17,069                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T18:07:17,069                    from ./base//sbml/math/L3Parser.h:37,
2023-09-08T18:07:17,070                    from L3Parser.ypp:82:
2023-09-08T18:07:17,070   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:17,071     117 |     struct unary_function
2023-09-08T18:07:17,071         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:26,730   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:26,730                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:07:26,731                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:07:26,731                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:07:26,732                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:07:26,732                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T18:07:26,733                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2023-09-08T18:07:26,733   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:26,734      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:26,735         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:26,735   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T18:07:26,736                    from /usr/include/c++/12/vector:66,
2023-09-08T18:07:26,737                    from ./base//sbml/math/L3ParserSettings.h:316,
2023-09-08T18:07:26,737                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2023-09-08T18:07:26,738   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:26,739     117 |     struct unary_function
2023-09-08T18:07:26,739         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:30,214   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T18:07:30,215   ./base/sbml/math/MathML.cpp:275:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:07:30,216     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,217         |                ^
2023-09-08T18:07:30,217   ./base/sbml/math/MathML.cpp:272:51: note: ‘element’ declared here
2023-09-08T18:07:30,218     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T18:07:30,219         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:07:30,220   ./base/sbml/math/MathML.cpp:275:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,220     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,221         |                                   ^
2023-09-08T18:07:30,222   ./base/sbml/math/MathML.cpp:272:27: note: ‘stream’ declared here
2023-09-08T18:07:30,222     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T18:07:30,223         |           ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,224   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T18:07:30,224   ./base/sbml/math/MathML.cpp:310:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T18:07:30,225     310 |   if (&s == NULL) return s;
2023-09-08T18:07:30,226         |          ^
2023-09-08T18:07:30,226   ./base/sbml/math/MathML.cpp:308:21: note: ‘s’ declared here
2023-09-08T18:07:30,227     308 | trim (const string& s)
2023-09-08T18:07:30,228         |       ~~~~~~~~~~~~~~^
2023-09-08T18:07:30,229   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2023-09-08T18:07:30,229   ./base/sbml/math/MathML.cpp:337:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,230     337 |   if (&node == NULL) return;
2023-09-08T18:07:30,231         |             ^
2023-09-08T18:07:30,231   ./base/sbml/math/MathML.cpp:335:29: note: ‘node’ declared here
2023-09-08T18:07:30,232     335 | checkFunctionArgs (ASTNode& node)
2023-09-08T18:07:30,232         |                    ~~~~~~~~~^~~~
2023-09-08T18:07:30,233   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2023-09-08T18:07:30,233   ./base/sbml/math/MathML.cpp:369:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,234     369 |   if (&node == NULL) return;
2023-09-08T18:07:30,235         |             ^
2023-09-08T18:07:30,235   ./base/sbml/math/MathML.cpp:367:24: note: ‘node’ declared here
2023-09-08T18:07:30,236     367 | reduceBinary (ASTNode& node)
2023-09-08T18:07:30,236         |               ~~~~~~~~~^~~~
2023-09-08T18:07:30,237   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:30,238   ./base/sbml/math/MathML.cpp:388:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,238     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,239         |             ^
2023-09-08T18:07:30,239   ./base/sbml/math/MathML.cpp:386:21: note: ‘node’ declared here
2023-09-08T18:07:30,240     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,241         |            ~~~~~~~~~^~~~
2023-09-08T18:07:30,241   ./base/sbml/math/MathML.cpp:388:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:07:30,242     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,242         |                                 ^
2023-09-08T18:07:30,243   ./base/sbml/math/MathML.cpp:386:43: note: ‘element’ declared here
2023-09-08T18:07:30,244     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,245         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:07:30,245   ./base/sbml/math/MathML.cpp:388:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,246     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,247         |                                                    ^
2023-09-08T18:07:30,247   ./base/sbml/math/MathML.cpp:386:68: note: ‘stream’ declared here
2023-09-08T18:07:30,248     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,249         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,249   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:30,250   ./base/sbml/math/MathML.cpp:436:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,251     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,251         |             ^
2023-09-08T18:07:30,252   ./base/sbml/math/MathML.cpp:434:21: note: ‘node’ declared here
2023-09-08T18:07:30,253     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,254         |            ~~~~~~~~~^~~~
2023-09-08T18:07:30,254   ./base/sbml/math/MathML.cpp:436:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:07:30,255     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,256         |                                 ^
2023-09-08T18:07:30,256   ./base/sbml/math/MathML.cpp:434:43: note: ‘element’ declared here
2023-09-08T18:07:30,257     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,258         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:07:30,258   ./base/sbml/math/MathML.cpp:436:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,259     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,259         |                                                    ^
2023-09-08T18:07:30,260   ./base/sbml/math/MathML.cpp:434:68: note: ‘stream’ declared here
2023-09-08T18:07:30,261     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,261         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,262   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:30,262   ./base/sbml/math/MathML.cpp:565:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,263     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,264         |             ^
2023-09-08T18:07:30,264   ./base/sbml/math/MathML.cpp:563:24: note: ‘node’ declared here
2023-09-08T18:07:30,265     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,265         |               ~~~~~~~~~^~~~
2023-09-08T18:07:30,266   ./base/sbml/math/MathML.cpp:565:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:07:30,267     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,267         |                                 ^
2023-09-08T18:07:30,268   ./base/sbml/math/MathML.cpp:563:46: note: ‘element’ declared here
2023-09-08T18:07:30,269     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,270         |                              ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:07:30,270   ./base/sbml/math/MathML.cpp:565:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,271     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,272         |                                                    ^
2023-09-08T18:07:30,272   ./base/sbml/math/MathML.cpp:563:71: note: ‘stream’ declared here
2023-09-08T18:07:30,273     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,274         |                                                       ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,274   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:30,275   ./base/sbml/math/MathML.cpp:585:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,276     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,276         |             ^
2023-09-08T18:07:30,277   ./base/sbml/math/MathML.cpp:583:19: note: ‘node’ declared here
2023-09-08T18:07:30,278     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,278         |          ~~~~~~~~~^~~~
2023-09-08T18:07:30,279   ./base/sbml/math/MathML.cpp:585:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:07:30,280     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,281         |                                 ^
2023-09-08T18:07:30,282   ./base/sbml/math/MathML.cpp:583:41: note: ‘element’ declared here
2023-09-08T18:07:30,282     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,283         |                         ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:07:30,283   ./base/sbml/math/MathML.cpp:585:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,284     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,284         |                                                    ^
2023-09-08T18:07:30,285   ./base/sbml/math/MathML.cpp:583:66: note: ‘stream’ declared here
2023-09-08T18:07:30,285     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T18:07:30,286         |                                                  ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,287   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2023-09-08T18:07:30,287   ./base/sbml/math/MathML.cpp:621:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:07:30,288     621 |   if (&name == NULL) return false;
2023-09-08T18:07:30,288         |             ^
2023-09-08T18:07:30,289   ./base/sbml/math/MathML.cpp:619:31: note: ‘name’ declared here
2023-09-08T18:07:30,290     619 | isMathMLNodeTag(const string& name)
2023-09-08T18:07:30,290         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,291   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2023-09-08T18:07:30,291   ./base/sbml/math/MathML.cpp:650:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,292     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,293         |             ^
2023-09-08T18:07:30,294   ./base/sbml/math/MathML.cpp:647:22: note: ‘node’ declared here
2023-09-08T18:07:30,294     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2023-09-08T18:07:30,295         |             ~~~~~~~~~^~~~
2023-09-08T18:07:30,296   ./base/sbml/math/MathML.cpp:650:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,297     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,297         |                                ^
2023-09-08T18:07:30,298   ./base/sbml/math/MathML.cpp:647:44: note: ‘stream’ declared here
2023-09-08T18:07:30,299     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2023-09-08T18:07:30,299         |                            ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,323   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,324   ./base/sbml/math/MathML.cpp:1021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,324    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,325         |             ^
2023-09-08T18:07:30,326   ./base/sbml/math/MathML.cpp:1019:25: note: ‘node’ declared here
2023-09-08T18:07:30,326    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,327         |          ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,328   ./base/sbml/math/MathML.cpp:1021:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,328    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,329         |                                ^
2023-09-08T18:07:30,330   ./base/sbml/math/MathML.cpp:1019:48: note: ‘stream’ declared here
2023-09-08T18:07:30,331    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,332         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,333   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,334   ./base/sbml/math/MathML.cpp:1060:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,334    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,335         |             ^
2023-09-08T18:07:30,336   ./base/sbml/math/MathML.cpp:1058:25: note: ‘node’ declared here
2023-09-08T18:07:30,336    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2023-09-08T18:07:30,337         |          ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,337   ./base/sbml/math/MathML.cpp:1060:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,338    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,339         |                                ^
2023-09-08T18:07:30,339   ./base/sbml/math/MathML.cpp:1058:48: note: ‘stream’ declared here
2023-09-08T18:07:30,340    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2023-09-08T18:07:30,340         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,348   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2023-09-08T18:07:30,348   ./base/sbml/math/MathML.cpp:1136:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,349    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,349         |             ^
2023-09-08T18:07:30,350   ./base/sbml/math/MathML.cpp:1134:31: note: ‘node’ declared here
2023-09-08T18:07:30,351    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2023-09-08T18:07:30,352         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,353   ./base/sbml/math/MathML.cpp:1136:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,353    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,354         |                                ^
2023-09-08T18:07:30,355   ./base/sbml/math/MathML.cpp:1134:54: note: ‘stream’ declared here
2023-09-08T18:07:30,355    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2023-09-08T18:07:30,356         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,357   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,357   ./base/sbml/math/MathML.cpp:1162:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,358    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,359         |             ^
2023-09-08T18:07:30,359   ./base/sbml/math/MathML.cpp:1160:30: note: ‘node’ declared here
2023-09-08T18:07:30,360    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,361         |               ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,361   ./base/sbml/math/MathML.cpp:1162:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,362    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,363         |                                ^
2023-09-08T18:07:30,363   ./base/sbml/math/MathML.cpp:1160:53: note: ‘stream’ declared here
2023-09-08T18:07:30,364    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,365         |                                    ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,366   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2023-09-08T18:07:30,367   ./base/sbml/math/MathML.cpp:1194:14: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:07:30,368    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T18:07:30,368         |              ^
2023-09-08T18:07:30,369   ./base/sbml/math/MathML.cpp:1192:28: note: ‘value’ declared here
2023-09-08T18:07:30,369    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2023-09-08T18:07:30,370         |              ~~~~~~~~~~~~~~^~~~~
2023-09-08T18:07:30,370   ./base/sbml/math/MathML.cpp:1194:33: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,371    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T18:07:30,372         |                                 ^
2023-09-08T18:07:30,372   ./base/sbml/math/MathML.cpp:1192:52: note: ‘stream’ declared here
2023-09-08T18:07:30,373    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2023-09-08T18:07:30,373         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,374   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2023-09-08T18:07:30,375   ./base/sbml/math/MathML.cpp:1232:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T18:07:30,375    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T18:07:30,376         |                 ^
2023-09-08T18:07:30,376   ./base/sbml/math/MathML.cpp:1228:36: note: ‘mantissa’ declared here
2023-09-08T18:07:30,377    1228 | writeENotation (  const double&    mantissa
2023-09-08T18:07:30,378         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:07:30,379   ./base/sbml/math/MathML.cpp:1232:36: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,379    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T18:07:30,380         |                                    ^
2023-09-08T18:07:30,381   ./base/sbml/math/MathML.cpp:1230:36: note: ‘stream’ declared here
2023-09-08T18:07:30,381    1230 |                 , XMLOutputStream& stream )
2023-09-08T18:07:30,382         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,383   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2023-09-08T18:07:30,384   ./base/sbml/math/MathML.cpp:1267:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T18:07:30,384    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,385         |                 ^
2023-09-08T18:07:30,385   ./base/sbml/math/MathML.cpp:1263:36: note: ‘mantissa’ declared here
2023-09-08T18:07:30,386    1263 | writeENotation (  const string&    mantissa
2023-09-08T18:07:30,387         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:07:30,387   ./base/sbml/math/MathML.cpp:1267:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2023-09-08T18:07:30,388    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,389         |                                      ^
2023-09-08T18:07:30,390   ./base/sbml/math/MathML.cpp:1264:36: note: ‘exponent’ declared here
2023-09-08T18:07:30,390    1264 |                 , const string&    exponent
2023-09-08T18:07:30,391         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:07:30,392   ./base/sbml/math/MathML.cpp:1267:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,392    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,393         |                                                         ^
2023-09-08T18:07:30,394   ./base/sbml/math/MathML.cpp:1265:36: note: ‘stream’ declared here
2023-09-08T18:07:30,394    1265 |                 , XMLOutputStream& stream )
2023-09-08T18:07:30,395         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,396   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,396   ./base/sbml/math/MathML.cpp:1286:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,397    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,397         |             ^
2023-09-08T18:07:30,398   ./base/sbml/math/MathML.cpp:1284:34: note: ‘node’ declared here
2023-09-08T18:07:30,399    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,399         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,400   ./base/sbml/math/MathML.cpp:1286:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,400    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,401         |                                ^
2023-09-08T18:07:30,402   ./base/sbml/math/MathML.cpp:1284:57: note: ‘stream’ declared here
2023-09-08T18:07:30,402    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,403         |                                        ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,403   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,404   ./base/sbml/math/MathML.cpp:1309:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,404    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,405         |             ^
2023-09-08T18:07:30,406   ./base/sbml/math/MathML.cpp:1307:35: note: ‘node’ declared here
2023-09-08T18:07:30,407    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,407         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,408   ./base/sbml/math/MathML.cpp:1309:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,409    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,409         |                                ^
2023-09-08T18:07:30,410   ./base/sbml/math/MathML.cpp:1307:58: note: ‘stream’ declared here
2023-09-08T18:07:30,411    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,411         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,412   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,413   ./base/sbml/math/MathML.cpp:1336:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,413    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,414         |             ^
2023-09-08T18:07:30,415   ./base/sbml/math/MathML.cpp:1334:31: note: ‘node’ declared here
2023-09-08T18:07:30,415    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,416         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,417   ./base/sbml/math/MathML.cpp:1336:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,418    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,418         |                                ^
2023-09-08T18:07:30,419   ./base/sbml/math/MathML.cpp:1334:54: note: ‘stream’ declared here
2023-09-08T18:07:30,420    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,421         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,422   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,422   ./base/sbml/math/MathML.cpp:1395:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,423    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,423         |             ^
2023-09-08T18:07:30,424   ./base/sbml/math/MathML.cpp:1393:29: note: ‘node’ declared here
2023-09-08T18:07:30,425    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,425         |              ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,426   ./base/sbml/math/MathML.cpp:1395:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,426    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,427         |                                ^
2023-09-08T18:07:30,428   ./base/sbml/math/MathML.cpp:1393:52: note: ‘stream’ declared here
2023-09-08T18:07:30,428    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,429         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,429   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,430   ./base/sbml/math/MathML.cpp:1435:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,431    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,431         |             ^
2023-09-08T18:07:30,432   ./base/sbml/math/MathML.cpp:1433:35: note: ‘node’ declared here
2023-09-08T18:07:30,433    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,434         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,435   ./base/sbml/math/MathML.cpp:1435:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,435    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,436         |                                ^
2023-09-08T18:07:30,437   ./base/sbml/math/MathML.cpp:1433:58: note: ‘stream’ declared here
2023-09-08T18:07:30,437    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,438         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,438   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,439   ./base/sbml/math/MathML.cpp:1500:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,440    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,440         |             ^
2023-09-08T18:07:30,441   ./base/sbml/math/MathML.cpp:1498:31: note: ‘node’ declared here
2023-09-08T18:07:30,442    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,442         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,443   ./base/sbml/math/MathML.cpp:1500:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,444    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,444         |                                ^
2023-09-08T18:07:30,445   ./base/sbml/math/MathML.cpp:1498:54: note: ‘stream’ declared here
2023-09-08T18:07:30,446    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,446         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,447   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,448   ./base/sbml/math/MathML.cpp:1533:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,449    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,449         |             ^
2023-09-08T18:07:30,450   ./base/sbml/math/MathML.cpp:1531:32: note: ‘node’ declared here
2023-09-08T18:07:30,450    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,451         |                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,451   ./base/sbml/math/MathML.cpp:1533:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,452    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,452         |                                ^
2023-09-08T18:07:30,453   ./base/sbml/math/MathML.cpp:1531:55: note: ‘stream’ declared here
2023-09-08T18:07:30,454    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,454         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,455   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2023-09-08T18:07:30,455   ./base/sbml/math/MathML.cpp:1576:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,456    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:30,457         |             ^
2023-09-08T18:07:30,457   ./base/sbml/math/MathML.cpp:1574:31: note: ‘node’ declared here
2023-09-08T18:07:30,458    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,459         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,459   ./base/sbml/math/MathML.cpp:1576:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,460    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:30,461         |                                ^
2023-09-08T18:07:30,461   ./base/sbml/math/MathML.cpp:1574:54: note: ‘stream’ declared here
2023-09-08T18:07:30,462    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,463         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,463   ./base/sbml/math/MathML.cpp:1576:56: warning: the compiler can assume that the address of ‘inSemantics’ will never be NULL [-Waddress]
2023-09-08T18:07:30,464    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:30,465         |                                                        ^
2023-09-08T18:07:30,466   ./base/sbml/math/MathML.cpp:1574:68: note: ‘inSemantics’ declared here
2023-09-08T18:07:30,466    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,467         |                                                              ~~~~~~^~~~~~~~~~~
2023-09-08T18:07:30,468   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,468   ./base/sbml/math/MathML.cpp:1603:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:07:30,469    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,470         |             ^
2023-09-08T18:07:30,471   ./base/sbml/math/MathML.cpp:1601:27: note: ‘node’ declared here
2023-09-08T18:07:30,472    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,472         |            ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:07:30,473   ./base/sbml/math/MathML.cpp:1603:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,474    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,474         |                                ^
2023-09-08T18:07:30,475   ./base/sbml/math/MathML.cpp:1601:50: note: ‘stream’ declared here
2023-09-08T18:07:30,475    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,476         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,476   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2023-09-08T18:07:30,477   ./base/sbml/math/MathML.cpp:1629:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,477    1629 |   if (&stream == NULL) return NULL;
2023-09-08T18:07:30,478         |               ^
2023-09-08T18:07:30,479   ./base/sbml/math/MathML.cpp:1627:29: note: ‘stream’ declared here
2023-09-08T18:07:30,479    1627 | readMathML (XMLInputStream& stream, std::string reqd_prefix, bool inRead)
2023-09-08T18:07:30,480         |             ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,480   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,481   ./base/sbml/math/MathML.cpp:1723:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:07:30,482    1723 |   if (node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,482         |                               ^
2023-09-08T18:07:30,483   ./base/sbml/math/MathML.cpp:1721:52: note: ‘stream’ declared here
2023-09-08T18:07:30,484    1721 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T18:07:30,484         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:07:30,945   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T18:07:30,946   ./base/sbml/math/MathML.cpp:275:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,946     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,947         |                                   ^
2023-09-08T18:07:30,948   ./base/sbml/math/MathML.cpp:275:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,949     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,949         |                ^
2023-09-08T18:07:30,950   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:30,950   ./base/sbml/math/MathML.cpp:565:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,951     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,952         |             ^
2023-09-08T18:07:30,952   ./base/sbml/math/MathML.cpp:565:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,953     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,953         |                                 ^
2023-09-08T18:07:30,954   ./base/sbml/math/MathML.cpp:565:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,955     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:30,956         |                                         ^
2023-09-08T18:07:30,956   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2023-09-08T18:07:30,957   ./base/sbml/math/MathML.cpp:369:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,958     369 |   if (&node == NULL) return;
2023-09-08T18:07:30,958         |   ^~
2023-09-08T18:07:30,959   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2023-09-08T18:07:30,959   ./base/sbml/math/MathML.cpp:337:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,960     337 |   if (&node == NULL) return;
2023-09-08T18:07:30,960         |   ^~
2023-09-08T18:07:30,961   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2023-09-08T18:07:30,961   ./base/sbml/math/MathML.cpp:621:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,962     621 |   if (&name == NULL) return false;
2023-09-08T18:07:30,962         |   ^~
2023-09-08T18:07:30,963   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T18:07:30,963   ./base/sbml/math/MathML.cpp:310:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,964     310 |   if (&s == NULL) return s;
2023-09-08T18:07:30,965         |   ^~
2023-09-08T18:07:30,965   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2023-09-08T18:07:30,966   ./base/sbml/math/MathML.cpp:1267:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,966    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,967         |                 ^
2023-09-08T18:07:30,967   ./base/sbml/math/MathML.cpp:1267:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,968    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,969         |                                      ^
2023-09-08T18:07:30,969   ./base/sbml/math/MathML.cpp:1267:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,970    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T18:07:30,970         |                                              ^
2023-09-08T18:07:30,971   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,972   ./base/sbml/math/MathML.cpp:1162:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,972    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,973         |             ^
2023-09-08T18:07:30,974   ./base/sbml/math/MathML.cpp:1162:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,974    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,975         |                                ^
2023-09-08T18:07:30,976   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,976   ./base/sbml/math/MathML.cpp:1021:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,977    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,977         |             ^
2023-09-08T18:07:30,978   ./base/sbml/math/MathML.cpp:1021:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,979    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,980         |                                ^
2023-09-08T18:07:30,980   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2023-09-08T18:07:30,981   ./base/sbml/math/MathML.cpp:1136:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,982    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,983         |             ^
2023-09-08T18:07:30,983   ./base/sbml/math/MathML.cpp:1136:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,984    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,984         |                                ^
2023-09-08T18:07:30,985   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2023-09-08T18:07:30,985   ./base/sbml/math/MathML.cpp:1232:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,986    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T18:07:30,987         |                 ^
2023-09-08T18:07:30,987   ./base/sbml/math/MathML.cpp:1232:36: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,988    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T18:07:30,988         |                                    ^
2023-09-08T18:07:30,989   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2023-09-08T18:07:30,989   ./base/sbml/math/MathML.cpp:1194:14: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,990    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T18:07:30,991         |              ^
2023-09-08T18:07:30,991   ./base/sbml/math/MathML.cpp:1194:33: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,992    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T18:07:30,993         |                                 ^
2023-09-08T18:07:30,994   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:30,994   ./base/sbml/math/MathML.cpp:1060:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,995    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,996         |             ^
2023-09-08T18:07:30,997   ./base/sbml/math/MathML.cpp:1060:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:30,998    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:30,998         |                                ^
2023-09-08T18:07:30,999   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,000   ./base/sbml/math/MathML.cpp:1603:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,000    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,001         |             ^
2023-09-08T18:07:31,002   ./base/sbml/math/MathML.cpp:1603:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,003    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,003         |                                ^
2023-09-08T18:07:31,004   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,005   ./base/sbml/math/MathML.cpp:1723:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,005    1723 |   if (node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,006         |                               ^
2023-09-08T18:07:31,007   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2023-09-08T18:07:31,007   ./base/sbml/math/MathML.cpp:1576:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,008    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:31,009         |             ^
2023-09-08T18:07:31,010   ./base/sbml/math/MathML.cpp:1576:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,010    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:31,011         |                                ^
2023-09-08T18:07:31,011   ./base/sbml/math/MathML.cpp:1576:40: warning: ‘nonnull’ argument ‘inSemantics’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,012    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T18:07:31,013         |                                        ^
2023-09-08T18:07:31,013   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,014   ./base/sbml/math/MathML.cpp:1435:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,014    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,015         |             ^
2023-09-08T18:07:31,016   ./base/sbml/math/MathML.cpp:1435:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,016    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,017         |                                ^
2023-09-08T18:07:31,017   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,018   ./base/sbml/math/MathML.cpp:1500:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,019    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,019         |             ^
2023-09-08T18:07:31,020   ./base/sbml/math/MathML.cpp:1500:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,021    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,021         |                                ^
2023-09-08T18:07:31,022   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,023   ./base/sbml/math/MathML.cpp:1395:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,023    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,024         |             ^
2023-09-08T18:07:31,025   ./base/sbml/math/MathML.cpp:1395:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,025    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,026         |                                ^
2023-09-08T18:07:31,027   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,028   ./base/sbml/math/MathML.cpp:1533:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,028    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,029         |             ^
2023-09-08T18:07:31,030   ./base/sbml/math/MathML.cpp:1533:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,030    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,031         |                                ^
2023-09-08T18:07:31,032   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,033   ./base/sbml/math/MathML.cpp:1286:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,033    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,034         |             ^
2023-09-08T18:07:31,035   ./base/sbml/math/MathML.cpp:1286:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,036    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,036         |                                ^
2023-09-08T18:07:31,037   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,037   ./base/sbml/math/MathML.cpp:1309:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,038    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,038         |             ^
2023-09-08T18:07:31,039   ./base/sbml/math/MathML.cpp:1309:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,040    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,040         |                                ^
2023-09-08T18:07:31,041   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T18:07:31,042   ./base/sbml/math/MathML.cpp:1336:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,042    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,043         |             ^
2023-09-08T18:07:31,043   ./base/sbml/math/MathML.cpp:1336:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,044    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,045         |                                ^
2023-09-08T18:07:31,045   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:31,046   ./base/sbml/math/MathML.cpp:436:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,046     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,047         |             ^
2023-09-08T18:07:31,048   ./base/sbml/math/MathML.cpp:436:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,049     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,050         |                                 ^
2023-09-08T18:07:31,050   ./base/sbml/math/MathML.cpp:436:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,051     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,052         |                                         ^
2023-09-08T18:07:31,052   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:31,053   ./base/sbml/math/MathML.cpp:388:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,054     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,054         |             ^
2023-09-08T18:07:31,055   ./base/sbml/math/MathML.cpp:388:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,056     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,057         |                                 ^
2023-09-08T18:07:31,057   ./base/sbml/math/MathML.cpp:388:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,058     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,059         |                                         ^
2023-09-08T18:07:31,060   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T18:07:31,060   ./base/sbml/math/MathML.cpp:585:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,061     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,062         |             ^
2023-09-08T18:07:31,063   ./base/sbml/math/MathML.cpp:585:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,063     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,064         |                                 ^
2023-09-08T18:07:31,065   ./base/sbml/math/MathML.cpp:585:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,065     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T18:07:31,066         |                                         ^
2023-09-08T18:07:31,067   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2023-09-08T18:07:31,067   ./base/sbml/math/MathML.cpp:650:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,068     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,068         |             ^
2023-09-08T18:07:31,069   ./base/sbml/math/MathML.cpp:650:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,070     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T18:07:31,070         |                                ^
2023-09-08T18:07:31,071   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2023-09-08T18:07:31,071   ./base/sbml/math/MathML.cpp:1629:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:07:31,072    1629 |   if (&stream == NULL) return NULL;
2023-09-08T18:07:31,073         |   ^~
2023-09-08T18:07:41,827   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:41,827                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:07:41,828                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:07:41,829                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:07:41,829                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:07:41,830                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2023-09-08T18:07:41,831                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2023-09-08T18:07:41,831   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:41,832      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:41,833         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:41,834   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:41,834                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:07:41,835                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:07:41,836                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:07:41,836   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:41,837     117 |     struct unary_function
2023-09-08T18:07:41,837         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:47,460   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:47,460                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:07:47,461                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:07:47,461                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:07:47,462                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T18:07:47,463                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2023-09-08T18:07:47,463   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:47,464      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:47,465         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:47,466   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:47,466                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:07:47,466                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:07:47,467                    from /usr/include/c++/12/ios:42,
2023-09-08T18:07:47,467                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:07:47,468                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2023-09-08T18:07:47,468   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:47,469     117 |     struct unary_function
2023-09-08T18:07:47,469         |            ^~~~~~~~~~~~~~
2023-09-08T18:07:59,824   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:07:59,824                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:07:59,825                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:07:59,825                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:07:59,826                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2023-09-08T18:07:59,827                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2023-09-08T18:07:59,827   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:07:59,828      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:07:59,828         |                           ^~~~~~~~~~~~~~
2023-09-08T18:07:59,829   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:07:59,829                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:07:59,830                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:07:59,830                    from /usr/include/c++/12/ios:42,
2023-09-08T18:07:59,831                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:07:59,832                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2023-09-08T18:07:59,832   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:07:59,833     117 |     struct unary_function
2023-09-08T18:07:59,833         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:07,734   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:07,735                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:07,735                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:07,736                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:08:07,737                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2023-09-08T18:08:07,737                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2023-09-08T18:08:07,738   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:07,739      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:07,739         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:07,740   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:07,740                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:07,741                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:07,742                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:07,742                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:07,743                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2023-09-08T18:08:07,744   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:07,745     117 |     struct unary_function
2023-09-08T18:08:07,745         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:08,163   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2023-09-08T18:08:08,163   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:08:08,164     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:08,165         |                  ^
2023-09-08T18:08:08,165   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:458:50: note: ‘attribute’ declared here
2023-09-08T18:08:08,166     458 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2023-09-08T18:08:08,166         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:08:08,167   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T18:08:08,167     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:08,168         |                                             ^
2023-09-08T18:08:08,169   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:459:50: note: ‘wrongattribute’ declared here
2023-09-08T18:08:08,169     459 |                               const std::string& wrongattribute)
2023-09-08T18:08:08,170         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T18:08:08,738   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:08,738     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:08,739         |                  ^
2023-09-08T18:08:08,740   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:462:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:08,741     462 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:08,741         |                                             ^
2023-09-08T18:08:13,764   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:13,765                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:13,765                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:13,766                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:13,767                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:13,767                    from ./base//sbml/packages/comp/sbml/CompBase.h:44,
2023-09-08T18:08:13,768                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:30:
2023-09-08T18:08:13,769   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:13,769      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:13,770         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:13,771   In file included from /usr/include/c++/12/bits/stl_tree.h:65,
2023-09-08T18:08:13,771                    from /usr/include/c++/12/set:60,
2023-09-08T18:08:13,772                    from ./base//sbml/packages/comp/sbml/CompBase.h:41:
2023-09-08T18:08:13,773   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:13,773     117 |     struct unary_function
2023-09-08T18:08:13,774         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:14,262   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:08:14,263   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:08:14,264     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:08:14,265         |                   ^
2023-09-08T18:08:14,266   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:48: note: ‘attributes’ declared here
2023-09-08T18:08:14,266     157 | CompBase::readAttributes (const XMLAttributes& attributes,
2023-09-08T18:08:14,267         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:08:14,267   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T18:08:14,268     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:08:14,268         |                                                  ^
2023-09-08T18:08:14,269   ./base/sbml/packages/comp/sbml/CompBase.cpp:158:53: note: ‘expectedAttributes’ declared here
2023-09-08T18:08:14,269     158 |                           const ExpectedAttributes& expectedAttributes)
2023-09-08T18:08:14,270         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:08:14,271   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T18:08:14,271   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:08:14,272     202 |   if(&element == NULL) return;
2023-09-08T18:08:14,272         |               ^
2023-09-08T18:08:14,273   ./base/sbml/packages/comp/sbml/CompBase.cpp:200:48: note: ‘element’ declared here
2023-09-08T18:08:14,274     200 | CompBase::logUnknownElement(const std::string &element)
2023-09-08T18:08:14,274         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:08:14,277   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T18:08:14,278   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:08:14,279     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,279         |                  ^
2023-09-08T18:08:14,280   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘attribute’ declared here
2023-09-08T18:08:14,281     223 | CompBase::logUnknownAttribute(const std::string &attribute,
2023-09-08T18:08:14,282         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:08:14,283   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:08:14,283     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,284         |                                      ^
2023-09-08T18:08:14,285   ./base/sbml/packages/comp/sbml/CompBase.cpp:224:50: note: ‘element’ declared here
2023-09-08T18:08:14,285     224 |                               const std::string& element)
2023-09-08T18:08:14,286         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:08:14,288   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T18:08:14,288   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:08:14,289     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,290         |                  ^
2023-09-08T18:08:14,291   ./base/sbml/packages/comp/sbml/CompBase.cpp:256:45: note: ‘attribute’ declared here
2023-09-08T18:08:14,291     256 | CompBase::logEmptyString(const std::string &attribute,
2023-09-08T18:08:14,292         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:08:14,293   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:08:14,294     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,294         |                                      ^
2023-09-08T18:08:14,295   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘element’ declared here
2023-09-08T18:08:14,296     257 |                          const std::string& element)
2023-09-08T18:08:14,296         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:08:14,297   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:08:14,298   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:08:14,298     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:14,299         |                  ^
2023-09-08T18:08:14,300   ./base/sbml/packages/comp/sbml/CompBase.cpp:277:43: note: ‘attribute’ declared here
2023-09-08T18:08:14,301     277 | CompBase::logInvalidId(const std::string& attribute,
2023-09-08T18:08:14,301         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:08:14,302   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T18:08:14,303     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:14,304         |                                             ^
2023-09-08T18:08:14,304   ./base/sbml/packages/comp/sbml/CompBase.cpp:278:43: note: ‘wrongattribute’ declared here
2023-09-08T18:08:14,305     278 |                        const std::string& wrongattribute,
2023-09-08T18:08:14,306         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T18:08:14,319   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T18:08:14,320   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T18:08:14,320     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,321         |                  ^
2023-09-08T18:08:14,322   ./base/sbml/packages/comp/sbml/CompBase.cpp:374:50: note: ‘attribute’ declared here
2023-09-08T18:08:14,322     374 | CompBase::logMissingAttribute(const std::string& attribute,
2023-09-08T18:08:14,323         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:08:14,324   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:08:14,324     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:14,325         |                                      ^
2023-09-08T18:08:14,326   ./base/sbml/packages/comp/sbml/CompBase.cpp:375:50: note: ‘element’ declared here
2023-09-08T18:08:14,326     375 |                               const std::string& element)
2023-09-08T18:08:14,327         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:08:15,009   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T18:08:15,009   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,010     202 |   if(&element == NULL) return;
2023-09-08T18:08:15,011         |   ^~
2023-09-08T18:08:15,012   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T18:08:15,012   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,013     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,014         |                  ^
2023-09-08T18:08:15,014   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,015     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,015         |                                      ^
2023-09-08T18:08:15,016   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T18:08:15,016   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,017     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,017         |                  ^
2023-09-08T18:08:15,018   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,018     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,019         |                                      ^
2023-09-08T18:08:15,020   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:08:15,020   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,021     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:15,022         |                  ^
2023-09-08T18:08:15,022   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,023     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T18:08:15,024         |                                             ^
2023-09-08T18:08:15,024   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T18:08:15,025   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,026     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,027         |                  ^
2023-09-08T18:08:15,027   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,028     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T18:08:15,029         |                                      ^
2023-09-08T18:08:15,030   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T18:08:15,030   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,031     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:08:15,032         |                   ^
2023-09-08T18:08:15,032   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:15,033     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T18:08:15,034         |                                                  ^
2023-09-08T18:08:20,772   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:20,773                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:20,774                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:20,775                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:20,775                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:20,776                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:20,776                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2023-09-08T18:08:20,777   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:20,777      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:20,778         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:20,779   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:20,779                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:20,780                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:20,780                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:20,781                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:20,781                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:20,782                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2023-09-08T18:08:20,783   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:20,783     117 |     struct unary_function
2023-09-08T18:08:20,784         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:26,886   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:26,886                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:26,887                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:26,887                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:26,888                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:26,889                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:26,889                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2023-09-08T18:08:26,890   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:26,890      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:26,891         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:26,892   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:26,892                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:26,893                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:26,893                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:26,894                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:26,894                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:26,895                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2023-09-08T18:08:26,896   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:26,896     117 |     struct unary_function
2023-09-08T18:08:26,897         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:36,552   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:36,553                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:36,554                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:36,554                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:36,555                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:36,556                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:36,556                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2023-09-08T18:08:36,557   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:36,558      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:36,558         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:36,559   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:36,559                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:36,560                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:36,561                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:36,561                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:36,562                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:36,562                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2023-09-08T18:08:36,563   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:36,563     117 |     struct unary_function
2023-09-08T18:08:36,564         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:36,946   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2023-09-08T18:08:36,947   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:08:36,948     118 |   if (&(sid) != NULL)
2023-09-08T18:08:36,948         |              ^
2023-09-08T18:08:36,949   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2023-09-08T18:08:36,950     113 | ListOfDeletions::remove (const std::string& sid)
2023-09-08T18:08:36,950         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:08:37,501   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:37,502     118 |   if (&(sid) != NULL)
2023-09-08T18:08:37,502         |   ^~
2023-09-08T18:08:41,434   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:41,435                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:41,436                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:41,437                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:41,437                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:41,438                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:41,439                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2023-09-08T18:08:41,440   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:41,440      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:41,441         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:41,442   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:41,442                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:41,443                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:41,443                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:41,444                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:41,445                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:41,445                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2023-09-08T18:08:41,446   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:41,447     117 |     struct unary_function
2023-09-08T18:08:41,448         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:46,364   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:46,365                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:46,365                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:46,366                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:46,366                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:46,367                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:46,367                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2023-09-08T18:08:46,367   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:46,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:46,368         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:46,369   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:46,369                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:46,370                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:46,370                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:46,371                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:46,371                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:46,372                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2023-09-08T18:08:46,372   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:46,373     117 |     struct unary_function
2023-09-08T18:08:46,373         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:51,287   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:51,288                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:51,288                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:51,289                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:51,290                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:51,291                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:51,291                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2023-09-08T18:08:51,292   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:51,293      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:51,294         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:51,294   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:51,295                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:51,296                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:51,296                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:51,297                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:51,298                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:51,298                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2023-09-08T18:08:51,299   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:51,300     117 |     struct unary_function
2023-09-08T18:08:51,300         |            ^~~~~~~~~~~~~~
2023-09-08T18:08:51,687   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2023-09-08T18:08:51,688   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:08:51,688     113 |   if (&(sid) != NULL)
2023-09-08T18:08:51,689         |              ^
2023-09-08T18:08:51,690   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2023-09-08T18:08:51,690     108 | ListOfPorts::remove (const std::string& sid)
2023-09-08T18:08:51,691         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:08:52,235   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:08:52,235     113 |   if (&(sid) != NULL)
2023-09-08T18:08:52,236         |   ^~
2023-09-08T18:08:56,132   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:08:56,133                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:08:56,133                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:08:56,134                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:08:56,134                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:08:56,135                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:08:56,135                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2023-09-08T18:08:56,136   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:08:56,137      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:08:56,137         |                           ^~~~~~~~~~~~~~
2023-09-08T18:08:56,138   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:08:56,138                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:08:56,139                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:08:56,139                    from /usr/include/c++/12/ios:42,
2023-09-08T18:08:56,140                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:08:56,141                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:08:56,141                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2023-09-08T18:08:56,142   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:08:56,142     117 |     struct unary_function
2023-09-08T18:08:56,143         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:00,692   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:00,692                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:00,693                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:00,694                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:00,694                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:00,695                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:00,696                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2023-09-08T18:09:00,696   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:00,697      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:00,697         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:00,698   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:00,699                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:00,699                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:00,700                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:00,701                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:00,701                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:00,702                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2023-09-08T18:09:00,703   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:00,703     117 |     struct unary_function
2023-09-08T18:09:00,704         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:01,094   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2023-09-08T18:09:01,095   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T18:09:01,095     113 |   if (&(sid) != NULL)
2023-09-08T18:09:01,096         |              ^
2023-09-08T18:09:01,097   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2023-09-08T18:09:01,097     108 | ListOfSubmodels::remove (const std::string& sid)
2023-09-08T18:09:01,098         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:09:01,648   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:09:01,649     113 |   if (&(sid) != NULL)
2023-09-08T18:09:01,649         |   ^~
2023-09-08T18:09:05,615   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:05,616                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:05,617                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:05,617                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:05,618                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:05,618                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:05,619                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2023-09-08T18:09:05,619   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:05,620      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:05,620         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:05,621   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:05,622                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:05,622                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:05,623                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:05,623                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:05,624                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:05,625                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2023-09-08T18:09:05,625   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:05,626     117 |     struct unary_function
2023-09-08T18:09:05,627         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:10,338   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:10,339                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:10,339                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:10,340                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:10,341                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:10,341                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:10,342                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2023-09-08T18:09:10,343   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:10,343      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:10,344         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:10,345   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:10,345                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:10,346                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:10,347                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:10,347                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:10,348                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:10,349                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2023-09-08T18:09:10,349   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:10,350     117 |     struct unary_function
2023-09-08T18:09:10,350         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:15,998   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2023-09-08T18:09:15,998                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2023-09-08T18:09:15,999   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:16,000      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:16,000         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:16,001   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:16,001                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:16,002                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:16,002                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:16,003                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:16,004                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:16,004                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2023-09-08T18:09:16,005   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:16,005     117 |     struct unary_function
2023-09-08T18:09:16,006         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:21,109   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:21,110                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:21,111                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:21,111                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:21,112                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:21,113                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:21,113                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2023-09-08T18:09:21,114   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:21,115      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:21,115         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:21,116   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:21,117                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:21,118                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:21,118                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:21,119                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:21,119                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:21,120                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2023-09-08T18:09:21,121   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:21,121     117 |     struct unary_function
2023-09-08T18:09:21,122         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:28,279   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:28,279                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:28,280                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:28,281                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:28,282                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:28,282                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:28,283                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2023-09-08T18:09:28,284   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:28,285      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:28,285         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:28,286   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:28,286                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:28,287                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:28,287                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:28,288                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:28,288                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:28,289                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2023-09-08T18:09:28,290   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:28,290     117 |     struct unary_function
2023-09-08T18:09:28,291         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:35,472   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:35,473                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:35,474                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:35,474                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:09:35,475                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:09:35,475                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T18:09:35,476                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:37:
2023-09-08T18:09:35,477   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:35,477      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:35,478         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:35,479   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:35,480                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:35,480                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:35,481                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:35,482                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:35,482                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:35,483                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:28:
2023-09-08T18:09:35,484   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:35,484     117 |     struct unary_function
2023-09-08T18:09:35,485         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:44,550   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:09:44,551                    from ./base//sbml/RateRule.h:113,
2023-09-08T18:09:44,552                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2023-09-08T18:09:44,552   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:44,553      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:44,554         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:44,555   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:44,555                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:09:44,556                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:09:44,556                    from /usr/include/c++/12/ios:42,
2023-09-08T18:09:44,557                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:09:44,558                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:09:44,558                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2023-09-08T18:09:44,559   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:44,559     117 |     struct unary_function
2023-09-08T18:09:44,560         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:58,054   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:09:58,054                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:09:58,055                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:09:58,055                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:09:58,056                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T18:09:58,056                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:483,
2023-09-08T18:09:58,057                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2023-09-08T18:09:58,057   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:09:58,058      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:09:58,059         |                           ^~~~~~~~~~~~~~
2023-09-08T18:09:58,059   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:09:58,060                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:09:58,060                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:09:58,061                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:482:
2023-09-08T18:09:58,061   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:09:58,062     117 |     struct unary_function
2023-09-08T18:09:58,062         |            ^~~~~~~~~~~~~~
2023-09-08T18:09:58,666   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:09:58,667   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:09:58,667     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T18:09:58,668         |              ^
2023-09-08T18:09:58,669   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:132:54: note: ‘props’ declared here
2023-09-08T18:09:58,669     132 |                         (const ConversionProperties &props) const
2023-09-08T18:09:58,670         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:09:59,656   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:09:59,656     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T18:09:59,657         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:10:08,631   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:10:08,632                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:10:08,632                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:10:08,633                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2023-09-08T18:10:08,634   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:08,634      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:08,635         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:08,636   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:08,637                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2023-09-08T18:10:08,637                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2023-09-08T18:10:08,638   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:08,639     117 |     struct unary_function
2023-09-08T18:10:08,640         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:09,037   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T18:10:09,038   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:10:09,038      54 |   if (&orig == NULL)
2023-09-08T18:10:09,039         |             ^
2023-09-08T18:10:09,039   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2023-09-08T18:10:09,040      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2023-09-08T18:10:09,040         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:10:09,041   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2023-09-08T18:10:09,042   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:10:09,042      80 |   if (&rhs == NULL)
2023-09-08T18:10:09,043         |            ^
2023-09-08T18:10:09,043   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2023-09-08T18:10:09,044      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2023-09-08T18:10:09,045         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:10:09,587   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:09,588      80 |   if (&rhs == NULL)
2023-09-08T18:10:09,589         |   ^~
2023-09-08T18:10:09,597   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T18:10:09,598   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:09,598      54 |   if (&orig == NULL)
2023-09-08T18:10:09,599         |   ^~
2023-09-08T18:10:13,756   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:10:13,757                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:10:13,758                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:10:13,758                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2023-09-08T18:10:13,759   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:13,760      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:13,761         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:13,761   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:13,762                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2023-09-08T18:10:13,762                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2023-09-08T18:10:13,763   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:13,764     117 |     struct unary_function
2023-09-08T18:10:13,764         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:14,073   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T18:10:14,074   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:10:14,075      50 |   if (&orig == NULL)
2023-09-08T18:10:14,076         |             ^
2023-09-08T18:10:14,076   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2023-09-08T18:10:14,077      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2023-09-08T18:10:14,078         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:10:14,079   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T18:10:14,079   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:10:14,080      76 |   if (&rhs == NULL)
2023-09-08T18:10:14,080         |            ^
2023-09-08T18:10:14,081   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2023-09-08T18:10:14,081      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2023-09-08T18:10:14,082         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:10:14,554   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T18:10:14,555   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:14,555      50 |   if (&orig == NULL)
2023-09-08T18:10:14,556         |   ^~
2023-09-08T18:10:14,557   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T18:10:14,557   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:14,558      76 |   if (&rhs == NULL)
2023-09-08T18:10:14,558         |   ^~
2023-09-08T18:10:17,707   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:10:17,707                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:10:17,708                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:10:17,709                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2023-09-08T18:10:17,709   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:17,710      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:17,711         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:17,712   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T18:10:17,712                    from /usr/include/c++/12/vector:66,
2023-09-08T18:10:17,713                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2023-09-08T18:10:17,714   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:17,715     117 |     struct unary_function
2023-09-08T18:10:17,715         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:22,418   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:10:22,419                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:10:22,419                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:10:22,420                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2023-09-08T18:10:22,421   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:22,421      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:22,422         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:22,423   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:22,424                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2023-09-08T18:10:22,424                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2023-09-08T18:10:22,425   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:22,426     117 |     struct unary_function
2023-09-08T18:10:22,427         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:22,736   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T18:10:22,737   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:10:22,737      53 |   if (&orig == NULL)
2023-09-08T18:10:22,738         |             ^
2023-09-08T18:10:22,738   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2023-09-08T18:10:22,739      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2023-09-08T18:10:22,740         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:10:22,740   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T18:10:22,741   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:10:22,742      83 |   if (&rhs == NULL)
2023-09-08T18:10:22,742         |            ^
2023-09-08T18:10:22,743   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2023-09-08T18:10:22,744      81 | SBMLUri::operator=(const SBMLUri& rhs)
2023-09-08T18:10:22,744         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T18:10:22,755   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2023-09-08T18:10:22,756   ./base/sbml/packages/comp/util/SBMLUri.cpp:164:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T18:10:22,756     164 |     ptr_fun<int,int>(tolower)); // scheme is icase
2023-09-08T18:10:22,757         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:10:22,758   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T18:10:22,758    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T18:10:22,759         |     ^~~~~~~
2023-09-08T18:10:22,763   ./base/sbml/packages/comp/util/SBMLUri.cpp:202:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T18:10:22,764     202 |      ptr_fun<int,int>(tolower)); // host is icase
2023-09-08T18:10:22,765         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T18:10:22,765   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T18:10:22,766    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T18:10:22,767         |     ^~~~~~~
2023-09-08T18:10:23,311   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T18:10:23,311   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:23,312      53 |   if (&orig == NULL)
2023-09-08T18:10:23,313         |   ^~
2023-09-08T18:10:23,313   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T18:10:23,314   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:23,315      83 |   if (&rhs == NULL)
2023-09-08T18:10:23,316         |   ^~
2023-09-08T18:10:27,746   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:10:27,747                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:10:27,748                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:10:27,749                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2023-09-08T18:10:27,749                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2023-09-08T18:10:27,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:27,751      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:27,752         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:27,752   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:27,753                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T18:10:27,753                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2023-09-08T18:10:27,754                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2023-09-08T18:10:27,754   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:27,755     117 |     struct unary_function
2023-09-08T18:10:27,755         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:44,342   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:10:44,342                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:10:44,343                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:10:44,344                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2023-09-08T18:10:44,345                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2023-09-08T18:10:44,345   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:44,346      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:44,346         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:44,348   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:44,348                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T18:10:44,349                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2023-09-08T18:10:44,350                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2023-09-08T18:10:44,351   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:44,352     117 |     struct unary_function
2023-09-08T18:10:44,352         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:48,538   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:10:48,539                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:10:48,539                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:10:48,540                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2023-09-08T18:10:48,541                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2023-09-08T18:10:48,542   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:48,542      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:48,543         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:48,544   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:10:48,544                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T18:10:48,545                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2023-09-08T18:10:48,546                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2023-09-08T18:10:48,546   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:48,547     117 |     struct unary_function
2023-09-08T18:10:48,548         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:52,750   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:10:52,751                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:10:52,752                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:10:52,752                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2023-09-08T18:10:52,753   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:52,754      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:10:52,754         |                           ^~~~~~~~~~~~~~
2023-09-08T18:10:52,755   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:10:52,755                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2023-09-08T18:10:52,756   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:52,756     117 |     struct unary_function
2023-09-08T18:10:52,757         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:53,519   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:10:53,519      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T18:10:53,520         |                       ^~~~~~~~~~~~~~
2023-09-08T18:10:53,521   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:10:53,521     117 |     struct unary_function
2023-09-08T18:10:53,522         |            ^~~~~~~~~~~~~~
2023-09-08T18:10:53,732   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:10:53,733   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T18:10:53,734     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T18:10:53,735         |            ^
2023-09-08T18:10:53,735   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2023-09-08T18:10:53,736     325 |   virtual bool visit (const SBase &x)
2023-09-08T18:10:53,737         |                       ~~~~~~~~~~~~~^
2023-09-08T18:10:53,754   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T18:10:53,754   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T18:10:53,755     481 |   if (&d == NULL) return 0;
2023-09-08T18:10:53,756         |          ^
2023-09-08T18:10:53,757   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2023-09-08T18:10:53,758     479 | CompValidator::validate (const SBMLDocument& d)
2023-09-08T18:10:53,758         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T18:10:53,772   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T18:10:53,772   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:10:53,773     610 |   if (&filename == NULL) return 0;
2023-09-08T18:10:53,774         |                 ^
2023-09-08T18:10:53,775   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2023-09-08T18:10:53,775     608 | CompValidator::validate (const std::string& filename)
2023-09-08T18:10:53,776         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:10:54,719   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:10:54,719   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:54,720     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T18:10:54,721         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:10:54,740   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T18:10:54,740   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:54,741     481 |   if (&d == NULL) return 0;
2023-09-08T18:10:54,742         |   ^~
2023-09-08T18:10:54,773   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T18:10:54,774   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:10:54,775     610 |   if (&filename == NULL) return 0;
2023-09-08T18:10:54,775         |   ^~
2023-09-08T18:11:00,129   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:00,129                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:00,130                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2023-09-08T18:11:00,131   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:00,131      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:00,132         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:00,132   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:00,133                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:00,133   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:00,134     117 |     struct unary_function
2023-09-08T18:11:00,135         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:04,815   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:11:04,815                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:11:04,816                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:11:04,816                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2023-09-08T18:11:04,817   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:04,817      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:04,818         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:04,819   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:04,819                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:11:04,820   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:04,820     117 |     struct unary_function
2023-09-08T18:11:04,821         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:09,562   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:11:09,563                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:11:09,564                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:11:09,564                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T18:11:09,565                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2023-09-08T18:11:09,566   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:09,566      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:09,567         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:09,568   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:09,569                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2023-09-08T18:11:09,570   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:09,570     117 |     struct unary_function
2023-09-08T18:11:09,571         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:14,069   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:11:14,070                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:11:14,071                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:11:14,071                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2023-09-08T18:11:14,072   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:14,072      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:14,073         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:14,073   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:14,074                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:11:14,075   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:14,075     117 |     struct unary_function
2023-09-08T18:11:14,076         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:18,215   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:11:18,215                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:11:18,216                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:11:18,217                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2023-09-08T18:11:18,217   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:18,218      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:18,218         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:18,219   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:18,220                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:11:18,221   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:18,222     117 |     struct unary_function
2023-09-08T18:11:18,222         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:22,509   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:22,510                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:22,511                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2023-09-08T18:11:22,511   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:22,512      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:22,513         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:22,514   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:22,514                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:22,515   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:22,516     117 |     struct unary_function
2023-09-08T18:11:22,517         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:30,247   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:30,247                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:30,248                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2023-09-08T18:11:30,249   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:30,249      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:30,250         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:30,251   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:30,252                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:30,252   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:30,253     117 |     struct unary_function
2023-09-08T18:11:30,253         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:35,028   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:35,028                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:35,029                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2023-09-08T18:11:35,030   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:35,030      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:35,031         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:35,031   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:35,032                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:35,032   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:35,033     117 |     struct unary_function
2023-09-08T18:11:35,034         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:42,712   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:11:42,713                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:11:42,713                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:11:42,714                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T18:11:42,715                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2023-09-08T18:11:42,715                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2023-09-08T18:11:42,716   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:42,716      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:42,717         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:42,718   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:42,718                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:11:42,719                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:11:42,719                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:11:42,720                    from ./base//sbml/SBase.h:145,
2023-09-08T18:11:42,720                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2023-09-08T18:11:42,721   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:42,722     117 |     struct unary_function
2023-09-08T18:11:42,722         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:48,137   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:48,137                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:48,138                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2023-09-08T18:11:48,139   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:48,140      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:48,140         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:48,141   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:48,142                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:48,142   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:48,143     117 |     struct unary_function
2023-09-08T18:11:48,144         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:52,517   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:52,518                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:52,518                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2023-09-08T18:11:52,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:52,519      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:52,520         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:52,520   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:52,521                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:52,522   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:52,522     117 |     struct unary_function
2023-09-08T18:11:52,523         |            ^~~~~~~~~~~~~~
2023-09-08T18:11:56,804   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:11:56,804                    from ./base//sbml/Model.h:446,
2023-09-08T18:11:56,805                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2023-09-08T18:11:56,805   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:11:56,806      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:11:56,806         |                           ^~~~~~~~~~~~~~
2023-09-08T18:11:56,807   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:11:56,807                    from ./base//sbml/Model.h:444:
2023-09-08T18:11:56,808   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:11:56,809     117 |     struct unary_function
2023-09-08T18:11:56,810         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:01,089   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:01,090                    from ./base//sbml/Model.h:446,
2023-09-08T18:12:01,091                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2023-09-08T18:12:01,091   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:01,092      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:01,093         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:01,094   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:01,094                    from ./base//sbml/Model.h:444:
2023-09-08T18:12:01,095   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:01,096     117 |     struct unary_function
2023-09-08T18:12:01,096         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:05,545   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:05,546                    from ./base//sbml/Model.h:446,
2023-09-08T18:12:05,547                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2023-09-08T18:12:05,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:05,548      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:05,549         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:05,550   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:05,550                    from ./base//sbml/Model.h:444:
2023-09-08T18:12:05,551   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:05,552     117 |     struct unary_function
2023-09-08T18:12:05,552         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:10,177   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:10,178                    from ./base//sbml/Model.h:446,
2023-09-08T18:12:10,178                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2023-09-08T18:12:10,179   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:10,180      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:10,180         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:10,181   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:10,181                    from ./base//sbml/Model.h:444:
2023-09-08T18:12:10,182   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:10,182     117 |     struct unary_function
2023-09-08T18:12:10,183         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:15,676   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:15,676                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:12:15,677                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:12:15,678                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:12:15,678                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:12:15,679                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2023-09-08T18:12:15,679                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2023-09-08T18:12:15,680   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:15,681      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:15,681         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:15,682   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:15,683                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:12:15,683                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:12:15,684                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:12:15,685   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:15,686     117 |     struct unary_function
2023-09-08T18:12:15,686         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:16,117   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:12:16,117                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:12:16,118                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2023-09-08T18:12:16,119   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:16,120     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:16,121         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:12:16,121   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:16,122     117 |     struct unary_function
2023-09-08T18:12:16,123         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:16,126   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:16,127     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:16,128         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:12:16,130   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:16,131     117 |     struct unary_function
2023-09-08T18:12:16,132         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:16,146   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:12:16,147   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:16,148     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:16,148         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:12:16,149   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:16,149     117 |     struct unary_function
2023-09-08T18:12:16,150         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:21,084   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:21,085                    from ./base//sbml/Model.h:446,
2023-09-08T18:12:21,085                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2023-09-08T18:12:21,086                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2023-09-08T18:12:21,087   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:21,087      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:21,088         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:21,088   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:21,089                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:12:21,089                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:12:21,090                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2023-09-08T18:12:21,090   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:21,091     117 |     struct unary_function
2023-09-08T18:12:21,092         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:21,480   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:12:21,480                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2023-09-08T18:12:21,481   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:21,482     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:21,483         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:12:21,483   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:21,484     117 |     struct unary_function
2023-09-08T18:12:21,485         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:21,489   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:21,490     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:21,490         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:12:21,491   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:21,492     117 |     struct unary_function
2023-09-08T18:12:21,492         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:21,509   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:12:21,509   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:21,510     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:21,511         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:12:21,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:21,512     117 |     struct unary_function
2023-09-08T18:12:21,513         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:27,364   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:27,365                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:12:27,366                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:12:27,366                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2023-09-08T18:12:27,367                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2023-09-08T18:12:27,367                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2023-09-08T18:12:27,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:27,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:27,369         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:27,369   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:27,370                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:12:27,370                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:12:27,371                    from /usr/include/c++/12/ios:42,
2023-09-08T18:12:27,371                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:12:27,372                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2023-09-08T18:12:27,373   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:27,373     117 |     struct unary_function
2023-09-08T18:12:27,374         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:31,679   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:12:31,680                    from ./base//sbml/Model.h:446,
2023-09-08T18:12:31,680                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2023-09-08T18:12:31,681                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2023-09-08T18:12:31,681   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:31,682      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:31,683         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:31,683   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:31,684                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:12:31,685                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:12:31,686                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2023-09-08T18:12:31,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:31,687     117 |     struct unary_function
2023-09-08T18:12:31,688         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:32,074   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:12:32,075                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2023-09-08T18:12:32,075   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:32,076     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:32,077         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:12:32,077   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:32,078     117 |     struct unary_function
2023-09-08T18:12:32,079         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:32,083   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:32,084     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:32,085         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:12:32,085   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:32,086     117 |     struct unary_function
2023-09-08T18:12:32,087         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:32,103   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2023-09-08T18:12:32,103   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:32,104     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:32,104         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:12:32,105   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:32,106     117 |     struct unary_function
2023-09-08T18:12:32,106         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:37,795   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2023-09-08T18:12:37,796                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2023-09-08T18:12:37,796   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:37,797      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:37,797         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:37,798   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:37,799                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:12:37,799                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:12:37,800                    from /usr/include/c++/12/ios:42,
2023-09-08T18:12:37,800                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:12:37,801                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:12:37,802                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2023-09-08T18:12:37,803   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:37,803     117 |     struct unary_function
2023-09-08T18:12:37,804         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:45,552   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:71,
2023-09-08T18:12:45,552                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2023-09-08T18:12:45,553   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:45,554      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:45,554         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:45,555   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:45,556                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:12:45,556                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:12:45,557                    from /usr/include/c++/12/ios:42,
2023-09-08T18:12:45,558                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:12:45,558                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:12:45,559                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2023-09-08T18:12:45,559   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:45,560     117 |     struct unary_function
2023-09-08T18:12:45,561         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:53,166   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2023-09-08T18:12:53,167                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2023-09-08T18:12:53,167   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:53,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:12:53,169         |                           ^~~~~~~~~~~~~~
2023-09-08T18:12:53,169   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:12:53,170                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:12:53,171                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:12:53,171                    from /usr/include/c++/12/ios:42,
2023-09-08T18:12:53,172                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:12:53,172                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:12:53,173                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2023-09-08T18:12:53,173   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:53,173     117 |     struct unary_function
2023-09-08T18:12:53,174         |            ^~~~~~~~~~~~~~
2023-09-08T18:12:53,736   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:12:53,736     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:12:53,737         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:12:53,738   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:12:53,738     117 |     struct unary_function
2023-09-08T18:12:53,739         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:00,381   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2023-09-08T18:13:00,381                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2023-09-08T18:13:00,382   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:00,382      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:00,383         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:00,384   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:00,384                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:13:00,385                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:13:00,386                    from /usr/include/c++/12/ios:42,
2023-09-08T18:13:00,387                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:13:00,387                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:13:00,388                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2023-09-08T18:13:00,389   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:00,389     117 |     struct unary_function
2023-09-08T18:13:00,390         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:00,958   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:00,958     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:00,959         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:00,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:00,960     117 |     struct unary_function
2023-09-08T18:13:00,961         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:07,231   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T18:13:07,232                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2023-09-08T18:13:07,232   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:07,233      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:07,233         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:07,234   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:07,235                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:13:07,236                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:13:07,236                    from /usr/include/c++/12/ios:42,
2023-09-08T18:13:07,237                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:13:07,237                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:13:07,238                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2023-09-08T18:13:07,238   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:07,239     117 |     struct unary_function
2023-09-08T18:13:07,240         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:07,796   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70:
2023-09-08T18:13:07,796   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:07,797     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:07,798         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:07,798   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:07,799     117 |     struct unary_function
2023-09-08T18:13:07,799         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:07,805   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:07,805     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:07,806         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:07,807   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:07,807     117 |     struct unary_function
2023-09-08T18:13:07,808         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,291   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:13:15,292                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:13:15,293                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:13:15,293                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:13:15,294                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:13:15,295                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2023-09-08T18:13:15,295                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2023-09-08T18:13:15,296   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:15,297      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:15,298         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:15,298   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:15,299                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:13:15,300                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:13:15,300                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2023-09-08T18:13:15,301   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:15,302     117 |     struct unary_function
2023-09-08T18:13:15,302         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,688   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:15,689                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:13:15,689                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T18:13:15,690                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2023-09-08T18:13:15,691   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:15,692     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:15,693         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:15,693   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:15,694     117 |     struct unary_function
2023-09-08T18:13:15,694         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,697   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:15,698     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:15,698         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:15,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:15,700     117 |     struct unary_function
2023-09-08T18:13:15,700         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,717   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:13:15,718   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:15,718     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:15,719         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,719   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:15,720     117 |     struct unary_function
2023-09-08T18:13:15,720         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:15,731   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:13:15,732   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:110:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:13:15,732     110 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T18:13:15,733         |              ^
2023-09-08T18:13:15,734   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:108:68: note: ‘props’ declared here
2023-09-08T18:13:15,735     108 | CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:13:15,736         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:13:16,581   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:110:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:13:16,582     110 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T18:13:16,582         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:13:23,262   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:13:23,263                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:13:23,263                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:13:23,264                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:13:23,265                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T18:13:23,265                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2023-09-08T18:13:23,266                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2023-09-08T18:13:23,267   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:23,267      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:23,268         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:23,269   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:23,270                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:13:23,271                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:13:23,271                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2023-09-08T18:13:23,272   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:23,273     117 |     struct unary_function
2023-09-08T18:13:23,273         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:23,659   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:23,660                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:13:23,660                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T18:13:23,661                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2023-09-08T18:13:23,662   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:23,662     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:23,663         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:23,663   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:23,664     117 |     struct unary_function
2023-09-08T18:13:23,664         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:23,670   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:23,671     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:23,671         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:23,672   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:23,672     117 |     struct unary_function
2023-09-08T18:13:23,673         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:23,690   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:13:23,691   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:23,692     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:23,692         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:23,693   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:23,693     117 |     struct unary_function
2023-09-08T18:13:23,694         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:23,703   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T18:13:23,703   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:100:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T18:13:23,704     100 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T18:13:23,705         |              ^
2023-09-08T18:13:23,705   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:70: note: ‘props’ declared here
2023-09-08T18:13:23,706      98 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T18:13:23,707         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:13:24,531   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:100:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:13:24,531     100 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T18:13:24,532         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:13:30,038   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:30,039                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:30,039                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:30,040                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2023-09-08T18:13:30,041                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2023-09-08T18:13:30,041   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:30,042      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:30,042         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:30,043   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:30,043                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T18:13:30,044                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2023-09-08T18:13:30,044                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2023-09-08T18:13:30,045   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:30,045     117 |     struct unary_function
2023-09-08T18:13:30,046         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:30,634   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:30,634                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T18:13:30,635   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:30,635     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:30,636         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:30,637   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:30,638     117 |     struct unary_function
2023-09-08T18:13:30,638         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:30,643   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:30,643     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:30,644         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:30,645   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:30,646     117 |     struct unary_function
2023-09-08T18:13:30,646         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:34,585   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:34,585                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:34,586                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:34,587                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2023-09-08T18:13:34,587                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2023-09-08T18:13:34,588   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:34,589      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:34,589         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:34,590   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:34,590                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T18:13:34,591                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2023-09-08T18:13:34,592                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2023-09-08T18:13:34,593   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:34,593     117 |     struct unary_function
2023-09-08T18:13:34,594         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:38,390   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:38,391                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:38,392                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:38,392                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2023-09-08T18:13:38,393   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:38,393      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:38,394         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:38,394   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:13:38,395                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2023-09-08T18:13:38,396   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:38,396     117 |     struct unary_function
2023-09-08T18:13:38,397         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:38,993   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:38,994                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:13:38,995                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T18:13:38,995                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2023-09-08T18:13:38,996   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:38,996     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:38,997         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:38,998   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:38,999     117 |     struct unary_function
2023-09-08T18:13:38,999         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:39,003   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:39,004     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:39,004         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:39,005   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:39,006     117 |     struct unary_function
2023-09-08T18:13:39,007         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:39,023   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:13:39,023   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:39,024     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:39,025         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:39,025   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:39,026     117 |     struct unary_function
2023-09-08T18:13:39,027         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:39,031   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:39,031      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T18:13:39,032         |                       ^~~~~~~~~~~~~~
2023-09-08T18:13:39,033   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:39,034     117 |     struct unary_function
2023-09-08T18:13:39,035         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:39,198   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:13:39,199   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T18:13:39,200     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T18:13:39,200         |            ^
2023-09-08T18:13:39,201   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2023-09-08T18:13:39,201     288 |   virtual bool visit (const SBase &x)
2023-09-08T18:13:39,202         |                       ~~~~~~~~~~~~~^
2023-09-08T18:13:39,215   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T18:13:39,216   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T18:13:39,217     383 |   if (&d == NULL) return 0;
2023-09-08T18:13:39,217         |          ^
2023-09-08T18:13:39,218   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2023-09-08T18:13:39,219     381 | FbcValidator::validate (const SBMLDocument& d)
2023-09-08T18:13:39,220         |                         ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T18:13:39,220   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T18:13:39,221   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:13:39,221     413 |   if (&filename == NULL) return 0;
2023-09-08T18:13:39,222         |                 ^
2023-09-08T18:13:39,223   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2023-09-08T18:13:39,223     411 | FbcValidator::validate (const std::string& filename)
2023-09-08T18:13:39,224         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:13:40,049   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T18:13:40,050   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:13:40,050     383 |   if (&d == NULL) return 0;
2023-09-08T18:13:40,051         |   ^~
2023-09-08T18:13:40,061   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:13:40,062   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:13:40,063     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T18:13:40,063         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:13:40,075   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T18:13:40,076   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:13:40,077     413 |   if (&filename == NULL) return 0;
2023-09-08T18:13:40,077         |   ^~
2023-09-08T18:13:44,089   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:44,090                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:44,091                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:44,091                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2023-09-08T18:13:44,092   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:44,093      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:44,094         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:44,094   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:44,095                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:13:44,095   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:44,096     117 |     struct unary_function
2023-09-08T18:13:44,096         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:44,685   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:44,685                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T18:13:44,686   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:44,687     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:44,687         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:44,688   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:44,688     117 |     struct unary_function
2023-09-08T18:13:44,689         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:44,694   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:44,695     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:44,696         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:44,696   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:44,697     117 |     struct unary_function
2023-09-08T18:13:44,698         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:48,026   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:48,027                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:48,028                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:48,029                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2023-09-08T18:13:48,029   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:48,030      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:48,031         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:48,032   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:48,032                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:13:48,033   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:48,034     117 |     struct unary_function
2023-09-08T18:13:48,034         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:51,929   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:13:51,930                    from ./base//sbml/Model.h:446,
2023-09-08T18:13:51,930                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2023-09-08T18:13:51,931   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:51,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:51,932         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:51,933   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:51,934                    from ./base//sbml/Model.h:444:
2023-09-08T18:13:51,934   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:51,935     117 |     struct unary_function
2023-09-08T18:13:51,936         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:52,388   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:52,389                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:13:52,389                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2023-09-08T18:13:52,390   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:52,390     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:52,391         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:52,391   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:52,392     117 |     struct unary_function
2023-09-08T18:13:52,392         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:52,397   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:52,398     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:52,399         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:52,399   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:52,400     117 |     struct unary_function
2023-09-08T18:13:52,400         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:52,417   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:13:52,418   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:52,418     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:52,419         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:52,420   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:52,420     117 |     struct unary_function
2023-09-08T18:13:52,421         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:56,303   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:13:56,303                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:13:56,304                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:13:56,304                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2023-09-08T18:13:56,305                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2023-09-08T18:13:56,306   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:56,306      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:13:56,307         |                           ^~~~~~~~~~~~~~
2023-09-08T18:13:56,308   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:13:56,308                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2023-09-08T18:13:56,309   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:56,309     117 |     struct unary_function
2023-09-08T18:13:56,310         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:56,829   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T18:13:56,830                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T18:13:56,831                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2023-09-08T18:13:56,831   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:56,832     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:56,833         |                                          ^~~~~~~~~~~~~~
2023-09-08T18:13:56,833   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:56,834     117 |     struct unary_function
2023-09-08T18:13:56,834         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:56,842   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:56,843     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:56,843         |                                      ^~~~~~~~~~~~~~
2023-09-08T18:13:56,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:56,844     117 |     struct unary_function
2023-09-08T18:13:56,845         |            ^~~~~~~~~~~~~~
2023-09-08T18:13:56,864   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T18:13:56,864   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:13:56,865     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T18:13:56,865         |                                            ^~~~~~~~~~~~~~
2023-09-08T18:13:56,866   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:13:56,866     117 |     struct unary_function
2023-09-08T18:13:56,867         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:01,909   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:01,909                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:01,910                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:01,911                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:14:01,912                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:14:01,913                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2023-09-08T18:14:01,914                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2023-09-08T18:14:01,914   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:01,915      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:01,916         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:01,917   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:01,918                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:14:01,919                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:14:01,920                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:14:01,921   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:01,922     117 |     struct unary_function
2023-09-08T18:14:01,923         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:07,661   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:07,662                    from ./base//sbml/Model.h:446,
2023-09-08T18:14:07,662                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2023-09-08T18:14:07,663                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2023-09-08T18:14:07,664   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:07,665      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:07,665         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:07,666   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:07,667                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:14:07,667                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:14:07,668                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2023-09-08T18:14:07,668   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:07,669     117 |     struct unary_function
2023-09-08T18:14:07,669         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:12,618   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:12,619                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:12,620                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:12,620                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2023-09-08T18:14:12,621                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2023-09-08T18:14:12,621                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2023-09-08T18:14:12,622   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:12,622      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:12,623         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:12,624   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:12,625                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:14:12,625                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:14:12,626                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2023-09-08T18:14:12,626   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:12,627     117 |     struct unary_function
2023-09-08T18:14:12,627         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:17,626   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T18:14:17,627                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2023-09-08T18:14:17,628                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2023-09-08T18:14:17,628   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:17,629      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:17,629         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:17,630   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:17,631                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:14:17,631                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:14:17,632                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2023-09-08T18:14:17,632   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:17,633     117 |     struct unary_function
2023-09-08T18:14:17,634         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:22,057   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:22,058                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:22,058                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:22,059                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:14:22,060                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:14:22,061                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:14:22,061                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:14:22,062                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:14:22,062                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2023-09-08T18:14:22,063   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:22,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:22,065         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:22,065   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:22,066                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2023-09-08T18:14:22,066   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:22,067     117 |     struct unary_function
2023-09-08T18:14:22,067         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:28,632   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:28,632                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:28,632                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:28,633                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:14:28,634                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:14:28,634                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:14:28,635                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:14:28,635                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:14:28,636                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:14:28,636                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2023-09-08T18:14:28,637                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2023-09-08T18:14:28,638   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:28,638      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:28,639         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:28,640   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:28,641                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2023-09-08T18:14:28,641   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:28,642     117 |     struct unary_function
2023-09-08T18:14:28,643         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:34,866   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:34,866                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:34,867                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:34,868                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:14:34,868                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:14:34,869                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:14:34,870                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:14:34,870                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T18:14:34,871                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2023-09-08T18:14:34,871                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2023-09-08T18:14:34,872   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:34,873      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:34,873         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:34,874   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:34,874                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2023-09-08T18:14:34,875   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:34,876     117 |     struct unary_function
2023-09-08T18:14:34,877         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:40,179   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2023-09-08T18:14:40,179                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2023-09-08T18:14:40,180   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:40,180      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:40,181         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:40,181   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:40,182                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:14:40,182                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:14:40,183                    from /usr/include/c++/12/ios:42,
2023-09-08T18:14:40,184                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:14:40,184                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:14:40,185                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2023-09-08T18:14:40,185   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:40,186     117 |     struct unary_function
2023-09-08T18:14:40,186         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:46,855   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:14:46,855                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:14:46,856                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:14:46,857                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:14:46,857                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:14:46,858                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:14:46,859                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2023-09-08T18:14:46,859                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2023-09-08T18:14:46,860   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:46,860      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:46,861         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:46,862   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:46,863                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:14:46,864                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:14:46,864                    from /usr/include/c++/12/ios:42,
2023-09-08T18:14:46,865                    from /usr/include/c++/12/istream:38,
2023-09-08T18:14:46,866                    from /usr/include/c++/12/sstream:38,
2023-09-08T18:14:46,866                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2023-09-08T18:14:46,867   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:46,867     117 |     struct unary_function
2023-09-08T18:14:46,868         |            ^~~~~~~~~~~~~~
2023-09-08T18:14:53,060   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2023-09-08T18:14:53,061                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2023-09-08T18:14:53,062   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:14:53,062      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:14:53,063         |                           ^~~~~~~~~~~~~~
2023-09-08T18:14:53,064   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:14:53,064                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2023-09-08T18:14:53,065   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:14:53,066     117 |     struct unary_function
2023-09-08T18:14:53,067         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:01,367   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:01,368                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:01,368                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:01,369                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:01,369                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:01,370                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:01,370                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:01,371                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:15:01,371                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:15:01,372                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T18:15:01,372                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2023-09-08T18:15:01,373   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:01,374      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:01,374         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:01,375   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:01,375                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:15:01,376                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:15:01,377                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:15:01,377                    from ./base//sbml/SBase.h:145,
2023-09-08T18:15:01,378                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T18:15:01,379   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:01,379     117 |     struct unary_function
2023-09-08T18:15:01,380         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:01,850   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T18:15:01,850   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T18:15:01,851     373 |   if (&id != NULL && id.empty())
2023-09-08T18:15:01,852         |           ^
2023-09-08T18:15:01,853   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2023-09-08T18:15:01,853     371 | int GraphicalObject::setId(const std::string& id)
2023-09-08T18:15:01,854         |                            ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T18:15:01,855   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T18:15:01,856   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T18:15:01,856     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T18:15:01,857         |               ^
2023-09-08T18:15:01,858   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2023-09-08T18:15:01,858     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2023-09-08T18:15:01,859         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:15:02,516   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T18:15:02,517   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:15:02,517     373 |   if (&id != NULL && id.empty())
2023-09-08T18:15:02,518         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2023-09-08T18:15:02,519   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T18:15:02,519   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:15:02,520     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T18:15:02,520         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-08T18:15:11,044   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2023-09-08T18:15:11,045                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2023-09-08T18:15:11,045   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:11,046      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:11,047         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:11,047   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:11,048                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:15:11,048                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:15:11,049                    from /usr/include/c++/12/ios:42,
2023-09-08T18:15:11,050                    from /usr/include/c++/12/ostream:38,
2023-09-08T18:15:11,050                    from /usr/include/c++/12/iostream:39,
2023-09-08T18:15:11,051                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2023-09-08T18:15:11,051   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:11,052     117 |     struct unary_function
2023-09-08T18:15:11,053         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:11,804   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2023-09-08T18:15:11,804   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:15:11,805     453 |   if (&(name) == NULL)
2023-09-08T18:15:11,806         |               ^
2023-09-08T18:15:11,807   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2023-09-08T18:15:11,807     448 | int Layout::setName (const std::string& name)
2023-09-08T18:15:11,808         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:15:12,632   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:15:12,633     453 |   if (&(name) == NULL)
2023-09-08T18:15:12,634         |   ^~
2023-09-08T18:15:24,277   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:24,278                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:24,278                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:24,279                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:24,280                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:24,280                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:24,281                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:24,282                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T18:15:24,283                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2023-09-08T18:15:24,283   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:24,284      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:24,285         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:24,286   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:24,287                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2023-09-08T18:15:24,287   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:24,288     117 |     struct unary_function
2023-09-08T18:15:24,289         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:30,498   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:30,499                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:30,499                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:30,500                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:30,500                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:30,501                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:30,502                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:30,502                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2023-09-08T18:15:30,503   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:30,503      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:30,504         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:30,504   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:30,505                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T18:15:30,505                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T18:15:30,506                    from /usr/include/c++/12/ios:42,
2023-09-08T18:15:30,507                    from /usr/include/c++/12/istream:38,
2023-09-08T18:15:30,508                    from /usr/include/c++/12/sstream:38,
2023-09-08T18:15:30,508                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2023-09-08T18:15:30,509   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:30,510     117 |     struct unary_function
2023-09-08T18:15:30,511         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:36,750   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2023-09-08T18:15:36,751                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2023-09-08T18:15:36,752   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:36,752      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:36,753         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:36,754   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:36,754                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2023-09-08T18:15:36,755   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:36,756     117 |     struct unary_function
2023-09-08T18:15:36,756         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:44,595   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:44,596                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:44,597                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:44,597                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:44,598                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:44,599                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:44,599                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:44,600                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:15:44,601                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:15:44,602                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2023-09-08T18:15:44,603                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2023-09-08T18:15:44,603   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:44,604      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:44,604         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:44,605   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:44,605                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2023-09-08T18:15:44,606   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:44,606     117 |     struct unary_function
2023-09-08T18:15:44,607         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:51,727   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:51,728                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:51,728                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:51,729                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:51,730                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:51,730                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:51,731                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:51,731                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:15:51,732                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:15:51,733                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2023-09-08T18:15:51,733                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2023-09-08T18:15:51,734   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:51,735      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:51,736         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:51,736   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:51,737                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2023-09-08T18:15:51,738   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:51,739     117 |     struct unary_function
2023-09-08T18:15:51,739         |            ^~~~~~~~~~~~~~
2023-09-08T18:15:57,643   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:15:57,643                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:15:57,644                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:15:57,645                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:15:57,645                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:15:57,646                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:15:57,647                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:15:57,647                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:15:57,648                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:15:57,649                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2023-09-08T18:15:57,650                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2023-09-08T18:15:57,650   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:15:57,651      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:15:57,652         |                           ^~~~~~~~~~~~~~
2023-09-08T18:15:57,653   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:15:57,654                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2023-09-08T18:15:57,654   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:15:57,655     117 |     struct unary_function
2023-09-08T18:15:57,655         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:05,065   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:16:05,066                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:16:05,066                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:16:05,066                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:16:05,067                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:16:05,067                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:16:05,068                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:16:05,068                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:16:05,069                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:16:05,069                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2023-09-08T18:16:05,070                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2023-09-08T18:16:05,070   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:05,071      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:05,071         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:05,072   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:05,073                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2023-09-08T18:16:05,073   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:05,074     117 |     struct unary_function
2023-09-08T18:16:05,075         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:11,754   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:16:11,755                    from ./base//sbml/Model.h:446,
2023-09-08T18:16:11,756                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2023-09-08T18:16:11,756   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:11,757      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:11,758         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:11,759   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:11,759                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:16:11,760                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T18:16:11,760                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2023-09-08T18:16:11,761   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:11,762     117 |     struct unary_function
2023-09-08T18:16:11,762         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:16,505   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:16:16,506                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:16:16,506                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:16:16,507                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:16:16,508                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:16:16,508                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T18:16:16,509                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T18:16:16,510                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T18:16:16,511                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T18:16:16,511                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T18:16:16,512                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2023-09-08T18:16:16,512   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:16,513      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:16,513         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:16,514   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:16,515                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:16:16,515                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:16:16,516                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:16:16,516                    from ./base//sbml/SBase.h:145,
2023-09-08T18:16:16,517                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T18:16:16,517   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:16,518     117 |     struct unary_function
2023-09-08T18:16:16,518         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:20,579   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:20,579                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:20,580                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:20,580                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2023-09-08T18:16:20,581                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2023-09-08T18:16:20,581   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:20,582      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:20,583         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:20,584   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:20,584                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T18:16:20,585                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2023-09-08T18:16:20,586                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2023-09-08T18:16:20,586   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:20,587     117 |     struct unary_function
2023-09-08T18:16:20,588         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:32,206   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:32,207                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:32,207                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:32,208                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2023-09-08T18:16:32,208                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2023-09-08T18:16:32,209   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:32,210      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:32,210         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:32,211   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:32,212                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T18:16:32,213                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2023-09-08T18:16:32,213                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2023-09-08T18:16:32,214   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:32,214     117 |     struct unary_function
2023-09-08T18:16:32,215         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:35,993   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:35,994                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:35,994                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:35,995                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2023-09-08T18:16:35,995   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:35,996      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:35,996         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:35,997   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:35,997                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:16:35,998   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:35,999     117 |     struct unary_function
2023-09-08T18:16:35,999         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:36,665   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:36,666      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T18:16:36,666         |                       ^~~~~~~~~~~~~~
2023-09-08T18:16:36,667   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:36,668     117 |     struct unary_function
2023-09-08T18:16:36,668         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:36,975   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:16:36,976   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T18:16:36,977     419 |     if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T18:16:36,977         |            ^
2023-09-08T18:16:36,978   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:35: note: ‘x’ declared here
2023-09-08T18:16:36,979     417 |   virtual bool visit(const SBase &x)
2023-09-08T18:16:36,980         |                      ~~~~~~~~~~~~~^
2023-09-08T18:16:37,005   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T18:16:37,005   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T18:16:37,006     550 |   if (&d == NULL) return 0;
2023-09-08T18:16:37,007         |          ^
2023-09-08T18:16:37,008   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2023-09-08T18:16:37,008     548 | LayoutValidator::validate (const SBMLDocument& d)
2023-09-08T18:16:37,009         |                            ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T18:16:37,010   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T18:16:37,011   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:16:37,011     592 |   if (&filename == NULL) return 0;
2023-09-08T18:16:37,012         |                 ^
2023-09-08T18:16:37,013   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2023-09-08T18:16:37,014     590 | LayoutValidator::validate (const std::string& filename)
2023-09-08T18:16:37,014         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:16:38,177   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T18:16:38,178   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:16:38,178     550 |   if (&d == NULL) return 0;
2023-09-08T18:16:38,179         |   ^~
2023-09-08T18:16:38,205   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:16:38,206   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:16:38,206     419 |     if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T18:16:38,207         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:16:38,228   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T18:16:38,229   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:16:38,230     592 |   if (&filename == NULL) return 0;
2023-09-08T18:16:38,230         |   ^~
2023-09-08T18:16:43,324   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:43,325                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:43,326                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:43,326                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2023-09-08T18:16:43,327   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:43,328      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:43,329         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:43,330   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:43,330                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:16:43,331   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:43,332     117 |     struct unary_function
2023-09-08T18:16:43,333         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:47,435   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:47,435                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:47,436                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:47,437                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2023-09-08T18:16:47,437   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:47,438      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:47,439         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:47,439   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:47,440                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:16:47,441   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:47,442     117 |     struct unary_function
2023-09-08T18:16:47,442         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:51,331   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:16:51,332                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:16:51,333                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:16:51,333                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2023-09-08T18:16:51,333                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2023-09-08T18:16:51,334   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:51,334      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:51,335         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:51,335   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:51,336                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2023-09-08T18:16:51,336   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:51,336     117 |     struct unary_function
2023-09-08T18:16:51,337         |            ^~~~~~~~~~~~~~
2023-09-08T18:16:57,053   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:16:57,053                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:16:57,054                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:16:57,054                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T18:16:57,055                    from ./base//sbml/extension/SBMLExtension.h:121,
2023-09-08T18:16:57,055                    from ./base//sbml/extension/SBMLExtensionRegister.h:55,
2023-09-08T18:16:57,056                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2023-09-08T18:16:57,057   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:16:57,057      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:16:57,058         |                           ^~~~~~~~~~~~~~
2023-09-08T18:16:57,059   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:16:57,059                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:16:57,060                    from ./base//sbml/SBMLError.h:457,
2023-09-08T18:16:57,060                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T18:16:57,061   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:16:57,062     117 |     struct unary_function
2023-09-08T18:16:57,062         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:02,224   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:17:02,224                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:17:02,225                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:17:02,226                    from ./base//sbml/extension/SBasePlugin.h:62,
2023-09-08T18:17:02,227                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2023-09-08T18:17:02,227                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2023-09-08T18:17:02,228   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:02,229      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:02,229         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:02,230   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:02,231                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:17:02,231                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:17:02,232                    from ./base//sbml/extension/SBasePlugin.h:60:
2023-09-08T18:17:02,233   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:02,233     117 |     struct unary_function
2023-09-08T18:17:02,234         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:07,277   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:17:07,278                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:17:07,278                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:17:07,279                    from ./base//sbml/extension/SBMLDocumentPlugin.h:58,
2023-09-08T18:17:07,279                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2023-09-08T18:17:07,280                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2023-09-08T18:17:07,280   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:07,281      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:07,281         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:07,282   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:07,282                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T18:17:07,283                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T18:17:07,283                    from ./base//sbml/extension/SBMLDocumentPlugin.h:57:
2023-09-08T18:17:07,284   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:07,285     117 |     struct unary_function
2023-09-08T18:17:07,285         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:11,319   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2023-09-08T18:17:11,319                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2023-09-08T18:17:11,320   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:11,321      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:11,321         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:11,322   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:11,322                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2023-09-08T18:17:11,323   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:11,323     117 |     struct unary_function
2023-09-08T18:17:11,324         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:11,978   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T18:17:11,978   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:11,979      81 |   if (&orig == NULL)
2023-09-08T18:17:11,980         |             ^
2023-09-08T18:17:11,981   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2023-09-08T18:17:11,981      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2023-09-08T18:17:11,982         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:11,983   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T18:17:11,984   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:11,985      99 |   if (&rhs == NULL)
2023-09-08T18:17:11,986         |            ^
2023-09-08T18:17:11,986   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2023-09-08T18:17:11,987      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2023-09-08T18:17:11,988         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:17:12,548   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T18:17:12,549   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:12,549      81 |   if (&orig == NULL)
2023-09-08T18:17:12,550         |   ^~
2023-09-08T18:17:12,551   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T18:17:12,551   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:12,551      99 |   if (&rhs == NULL)
2023-09-08T18:17:12,552         |   ^~
2023-09-08T18:17:16,774   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2023-09-08T18:17:16,775                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2023-09-08T18:17:16,775   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:16,776      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:16,777         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:16,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:16,778                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2023-09-08T18:17:16,778   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:16,779     117 |     struct unary_function
2023-09-08T18:17:16,780         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:17,640   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T18:17:17,641   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:17,642      88 |   if (&orig == NULL)
2023-09-08T18:17:17,642         |             ^
2023-09-08T18:17:17,643   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2023-09-08T18:17:17,644      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2023-09-08T18:17:17,645         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:17,646   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T18:17:17,646   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:17,647     114 |   if (&rhs == NULL)
2023-09-08T18:17:17,648         |            ^
2023-09-08T18:17:17,649   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2023-09-08T18:17:17,650     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2023-09-08T18:17:17,651         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:17:17,676   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T18:17:17,677   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:657:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:17,678     657 |   if (&orig == NULL)
2023-09-08T18:17:17,679         |             ^
2023-09-08T18:17:17,679   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:654:70: note: ‘orig’ declared here
2023-09-08T18:17:17,680     654 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2023-09-08T18:17:17,681         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:17,682   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T18:17:17,683   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:679:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:17,684     679 |   if (&rhs == NULL)
2023-09-08T18:17:17,685         |            ^
2023-09-08T18:17:17,686   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:677:59: note: ‘rhs’ declared here
2023-09-08T18:17:17,687     677 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2023-09-08T18:17:17,687         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:17:18,318   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T18:17:18,319   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:18,320      88 |   if (&orig == NULL)
2023-09-08T18:17:18,320         |   ^~
2023-09-08T18:17:18,321   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T18:17:18,322   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:18,322     114 |   if (&rhs == NULL)
2023-09-08T18:17:18,323         |   ^~
2023-09-08T18:17:18,323   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T18:17:18,324   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:679:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:18,324     679 |   if (&rhs == NULL)
2023-09-08T18:17:18,325         |   ^~
2023-09-08T18:17:18,334   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T18:17:18,335   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:657:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:18,336     657 |   if (&orig == NULL)
2023-09-08T18:17:18,336         |   ^~
2023-09-08T18:17:24,067   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2023-09-08T18:17:24,068                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2023-09-08T18:17:24,069   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:24,069      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:24,070         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:24,070   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:24,071                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2023-09-08T18:17:24,072   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:24,072     117 |     struct unary_function
2023-09-08T18:17:24,073         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:24,727   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T18:17:24,728   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:24,728      91 |   if (&orig == NULL)
2023-09-08T18:17:24,729         |             ^
2023-09-08T18:17:24,730   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2023-09-08T18:17:24,730      88 | Input::Input (const Input& orig)
2023-09-08T18:17:24,731         |               ~~~~~~~~~~~~~^~~~
2023-09-08T18:17:24,732   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T18:17:24,732   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:24,733     114 |   if (&rhs == NULL)
2023-09-08T18:17:24,734         |            ^
2023-09-08T18:17:24,735   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2023-09-08T18:17:24,735     112 | Input::operator=(const Input& rhs)
2023-09-08T18:17:24,736         |                  ~~~~~~~~~~~~~^~~
2023-09-08T18:17:24,737   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T18:17:24,738   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T18:17:24,738     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T18:17:24,739         |                             ^
2023-09-08T18:17:24,739   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2023-09-08T18:17:24,740     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T18:17:24,740         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:17:24,741   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T18:17:24,742   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:17:24,742     328 |   if (&(name) == NULL)
2023-09-08T18:17:24,743         |               ^
2023-09-08T18:17:24,743   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2023-09-08T18:17:24,744     326 | Input::setName(const std::string& name)
2023-09-08T18:17:24,744         |                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:24,789   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2023-09-08T18:17:24,790   ./base/sbml/packages/qual/sbml/Input.cpp:972:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:24,790     972 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T18:17:24,791         |                             ^~~~~~~~~~~~~~
2023-09-08T18:17:24,792   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:24,792     117 |     struct unary_function
2023-09-08T18:17:24,793         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:25,423   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T18:17:25,424   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:25,425     328 |   if (&(name) == NULL)
2023-09-08T18:17:25,425         |   ^~
2023-09-08T18:17:25,443   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T18:17:25,443   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:25,444      91 |   if (&orig == NULL)
2023-09-08T18:17:25,445         |   ^~
2023-09-08T18:17:25,445   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T18:17:25,446   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:25,446     114 |   if (&rhs == NULL)
2023-09-08T18:17:25,447         |   ^~
2023-09-08T18:17:25,448   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T18:17:25,448   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:25,449     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T18:17:25,449         |   ^~
2023-09-08T18:17:32,975   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2023-09-08T18:17:32,975                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2023-09-08T18:17:32,976   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:32,977      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:32,978         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:32,979   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:32,979                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2023-09-08T18:17:32,980   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:32,980     117 |     struct unary_function
2023-09-08T18:17:32,981         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:33,632   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T18:17:33,633   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:33,633      89 |   if (&orig == NULL)
2023-09-08T18:17:33,634         |             ^
2023-09-08T18:17:33,635   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2023-09-08T18:17:33,635      86 | Output::Output (const Output& orig)
2023-09-08T18:17:33,636         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:33,636   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T18:17:33,637   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:33,638     111 |   if (&rhs == NULL)
2023-09-08T18:17:33,638         |            ^
2023-09-08T18:17:33,639   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2023-09-08T18:17:33,640     109 | Output::operator=(const Output& rhs)
2023-09-08T18:17:33,640         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T18:17:33,641   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T18:17:33,642   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T18:17:33,642     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T18:17:33,643         |                             ^
2023-09-08T18:17:33,643   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2023-09-08T18:17:33,644     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T18:17:33,645         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T18:17:33,645   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T18:17:33,646   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:17:33,647     304 |   if (&(name) == NULL)
2023-09-08T18:17:33,647         |               ^
2023-09-08T18:17:33,648   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2023-09-08T18:17:33,649     302 | Output::setName(const std::string& name)
2023-09-08T18:17:33,649         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:33,688   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2023-09-08T18:17:33,689   ./base/sbml/packages/qual/sbml/Output.cpp:884:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:33,690     884 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T18:17:33,690         |                             ^~~~~~~~~~~~~~
2023-09-08T18:17:33,691   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:33,692     117 |     struct unary_function
2023-09-08T18:17:33,692         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:34,318   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T18:17:34,319   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:34,320     304 |   if (&(name) == NULL)
2023-09-08T18:17:34,320         |   ^~
2023-09-08T18:17:34,337   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T18:17:34,337   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:34,338      89 |   if (&orig == NULL)
2023-09-08T18:17:34,338         |   ^~
2023-09-08T18:17:34,339   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T18:17:34,340   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:34,340     111 |   if (&rhs == NULL)
2023-09-08T18:17:34,341         |   ^~
2023-09-08T18:17:34,341   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T18:17:34,342   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:34,342     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T18:17:34,343         |   ^~
2023-09-08T18:17:41,416   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2023-09-08T18:17:41,417                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2023-09-08T18:17:41,418   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:41,418      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:41,419         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:41,420   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:41,420                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2023-09-08T18:17:41,421   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:41,422     117 |     struct unary_function
2023-09-08T18:17:41,422         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:42,075   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T18:17:42,076   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:42,076      95 |   if (&orig == NULL)
2023-09-08T18:17:42,077         |             ^
2023-09-08T18:17:42,078   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2023-09-08T18:17:42,078      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2023-09-08T18:17:42,079         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:42,080   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T18:17:42,080   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:42,081     120 |   if (&rhs == NULL)
2023-09-08T18:17:42,082         |            ^
2023-09-08T18:17:42,083   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2023-09-08T18:17:42,083     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2023-09-08T18:17:42,084         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:17:42,085   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T18:17:42,086   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2023-09-08T18:17:42,086     295 |   if (&(compartment) == NULL)
2023-09-08T18:17:42,087         |                      ^
2023-09-08T18:17:42,087   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2023-09-08T18:17:42,088     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2023-09-08T18:17:42,089         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T18:17:42,089   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2023-09-08T18:17:42,090   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:17:42,090     329 |   if (&(name) == NULL)
2023-09-08T18:17:42,091         |               ^
2023-09-08T18:17:42,092   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2023-09-08T18:17:42,093     327 | QualitativeSpecies::setName(const std::string& name)
2023-09-08T18:17:42,093         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:42,755   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:42,755     329 |   if (&(name) == NULL)
2023-09-08T18:17:42,756         |   ^~
2023-09-08T18:17:42,771   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T18:17:42,772   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:42,773      95 |   if (&orig == NULL)
2023-09-08T18:17:42,773         |   ^~
2023-09-08T18:17:42,774   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T18:17:42,775   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:42,775     120 |   if (&rhs == NULL)
2023-09-08T18:17:42,776         |   ^~
2023-09-08T18:17:42,776   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T18:17:42,777   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:42,778     295 |   if (&(compartment) == NULL)
2023-09-08T18:17:42,778         |   ^~
2023-09-08T18:17:50,007   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2023-09-08T18:17:50,008                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2023-09-08T18:17:50,009   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:50,009      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:50,010         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:50,011   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:50,012                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2023-09-08T18:17:50,012   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:50,013     117 |     struct unary_function
2023-09-08T18:17:50,014         |            ^~~~~~~~~~~~~~
2023-09-08T18:17:50,687   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T18:17:50,688   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:17:50,688      94 |   if (&orig == NULL)
2023-09-08T18:17:50,689         |             ^
2023-09-08T18:17:50,690   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2023-09-08T18:17:50,690      91 | Transition::Transition (const Transition& orig)
2023-09-08T18:17:50,691         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:50,691   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T18:17:50,692   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:17:50,693     118 |   if (&rhs == NULL)
2023-09-08T18:17:50,693         |            ^
2023-09-08T18:17:50,694   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2023-09-08T18:17:50,694     116 | Transition::operator=(const Transition& rhs)
2023-09-08T18:17:50,695         |                       ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:17:50,700   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2023-09-08T18:17:50,700   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:17:50,701     257 |   if (&(name) == NULL)
2023-09-08T18:17:50,702         |               ^
2023-09-08T18:17:50,702   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2023-09-08T18:17:50,703     255 | Transition::setName(const std::string& name)
2023-09-08T18:17:50,704         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:17:51,357   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:51,358     257 |   if (&(name) == NULL)
2023-09-08T18:17:51,359         |   ^~
2023-09-08T18:17:51,375   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T18:17:51,376   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:51,376     118 |   if (&rhs == NULL)
2023-09-08T18:17:51,377         |   ^~
2023-09-08T18:17:51,392   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T18:17:51,393   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:17:51,394      94 |   if (&orig == NULL)
2023-09-08T18:17:51,394         |   ^~
2023-09-08T18:17:58,103   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:17:58,103                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:17:58,104                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:17:58,105                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2023-09-08T18:17:58,105                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2023-09-08T18:17:58,106   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:17:58,107      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:17:58,107         |                           ^~~~~~~~~~~~~~
2023-09-08T18:17:58,108   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:17:58,108                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T18:17:58,109                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2023-09-08T18:17:58,110                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2023-09-08T18:17:58,111   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:17:58,111     117 |     struct unary_function
2023-09-08T18:17:58,112         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:03,382   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:03,383                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:03,384                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:03,384                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2023-09-08T18:18:03,385                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2023-09-08T18:18:03,385   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:03,386      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:03,386         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:03,387   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:03,388                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T18:18:03,388                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2023-09-08T18:18:03,389                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2023-09-08T18:18:03,389   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:03,390     117 |     struct unary_function
2023-09-08T18:18:03,391         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:07,181   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:07,182                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:07,183                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:07,183                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2023-09-08T18:18:07,184                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2023-09-08T18:18:07,185   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:07,186      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:07,186         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:07,187   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:07,188                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T18:18:07,189                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2023-09-08T18:18:07,190                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2023-09-08T18:18:07,191   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:07,191     117 |     struct unary_function
2023-09-08T18:18:07,192         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:11,180   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:11,181                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:11,181                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:11,182                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2023-09-08T18:18:11,183   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:11,183      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:11,184         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:11,185   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:11,185                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:18:11,186   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:11,186     117 |     struct unary_function
2023-09-08T18:18:11,187         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:11,811   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:11,811      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T18:18:11,812         |                       ^~~~~~~~~~~~~~
2023-09-08T18:18:11,812   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:11,813     117 |     struct unary_function
2023-09-08T18:18:11,814         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:12,007   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:18:12,008   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T18:18:12,008     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T18:18:12,009         |           ^
2023-09-08T18:18:12,009   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2023-09-08T18:18:12,010     313 |   virtual bool visit (const SBase &x)
2023-09-08T18:18:12,011         |                       ~~~~~~~~~~~~~^
2023-09-08T18:18:12,028   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T18:18:12,028   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T18:18:12,029     419 |   if (&d == NULL) return 0;
2023-09-08T18:18:12,029         |          ^
2023-09-08T18:18:12,030   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2023-09-08T18:18:12,031     417 | QualValidator::validate (const SBMLDocument& d)
2023-09-08T18:18:12,031         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T18:18:12,032   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T18:18:12,033   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:18:12,033     449 |   if (&filename == NULL) return 0;
2023-09-08T18:18:12,034         |                 ^
2023-09-08T18:18:12,035   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2023-09-08T18:18:12,035     447 | QualValidator::validate (const std::string& filename)
2023-09-08T18:18:12,036         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:18:12,939   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T18:18:12,940   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:12,941     419 |   if (&d == NULL) return 0;
2023-09-08T18:18:12,941         |   ^~
2023-09-08T18:18:12,955   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T18:18:12,956   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:12,957     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T18:18:12,958         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:18:12,972   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T18:18:12,972   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:12,973     449 |   if (&filename == NULL) return 0;
2023-09-08T18:18:12,974         |   ^~
2023-09-08T18:18:17,393   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:18:17,393                    from ./base//sbml/Model.h:446,
2023-09-08T18:18:17,394                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2023-09-08T18:18:17,394   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:17,395      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:17,395         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:17,396   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:17,396                    from ./base//sbml/Model.h:444:
2023-09-08T18:18:17,397   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:17,398     117 |     struct unary_function
2023-09-08T18:18:17,398         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:21,772   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:21,772                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:21,773                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:21,774                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2023-09-08T18:18:21,774                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2023-09-08T18:18:21,775   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:21,775      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:21,776         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:21,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:21,777                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2023-09-08T18:18:21,778   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:21,779     117 |     struct unary_function
2023-09-08T18:18:21,780         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:22,406   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:18:22,407   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:18:22,408      97 |   if (&(node) == NULL)
2023-09-08T18:18:22,409         |               ^
2023-09-08T18:18:22,410   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2023-09-08T18:18:22,410      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:18:22,411         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:18:22,916   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:22,917      97 |   if (&(node) == NULL)
2023-09-08T18:18:22,918         |   ^~
2023-09-08T18:18:26,087   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:26,088                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:26,088                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:26,089                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2023-09-08T18:18:26,090   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:26,090      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:26,091         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:26,091   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:26,092                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:18:26,092   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:26,093     117 |     struct unary_function
2023-09-08T18:18:26,094         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:30,064   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:30,065                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:30,065                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:30,066                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2023-09-08T18:18:30,066   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:30,067      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:30,067         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:30,068   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:30,069                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:18:30,070   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:30,070     117 |     struct unary_function
2023-09-08T18:18:30,071         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:33,820   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:33,821                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:33,821                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:33,822                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2023-09-08T18:18:33,822   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:33,823      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:33,824         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:33,824   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:33,825                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:18:33,825   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:33,826     117 |     struct unary_function
2023-09-08T18:18:33,826         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:37,850   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:37,851                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:37,852                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:18:37,852                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2023-09-08T18:18:37,853                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2023-09-08T18:18:37,854   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:37,854      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:37,855         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:37,856   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:37,857                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2023-09-08T18:18:37,857   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:37,858     117 |     struct unary_function
2023-09-08T18:18:37,858         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:43,366   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:18:43,366                    from ./base//sbml/Model.h:446,
2023-09-08T18:18:43,367                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2023-09-08T18:18:43,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:43,368      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:43,369         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:43,369   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:43,370                    from ./base//sbml/Model.h:444:
2023-09-08T18:18:43,370   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:43,371     117 |     struct unary_function
2023-09-08T18:18:43,371         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:47,552   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:18:47,553                    from ./base//sbml/Model.h:446,
2023-09-08T18:18:47,553                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2023-09-08T18:18:47,554   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:47,554      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:47,555         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:47,556   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:47,557                    from ./base//sbml/Model.h:444:
2023-09-08T18:18:47,557   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:47,558     117 |     struct unary_function
2023-09-08T18:18:47,559         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:51,734   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:18:51,735                    from ./base//sbml/Model.h:446,
2023-09-08T18:18:51,736                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2023-09-08T18:18:51,737   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:51,738      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:51,738         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:51,739   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:51,740                    from ./base//sbml/Model.h:444:
2023-09-08T18:18:51,740   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:51,741     117 |     struct unary_function
2023-09-08T18:18:51,742         |            ^~~~~~~~~~~~~~
2023-09-08T18:18:52,126   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T18:18:52,126   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:18:52,127      74 |   if (&orig == NULL)
2023-09-08T18:18:52,128         |             ^
2023-09-08T18:18:52,128   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2023-09-08T18:18:52,129      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2023-09-08T18:18:52,130         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:18:52,130   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T18:18:52,131   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:18:52,132     138 |   if (&rhs == NULL)
2023-09-08T18:18:52,132         |            ^
2023-09-08T18:18:52,133   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2023-09-08T18:18:52,133     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2023-09-08T18:18:52,134         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:18:52,614   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T18:18:52,615   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:52,615      74 |   if (&orig == NULL)
2023-09-08T18:18:52,616         |   ^~
2023-09-08T18:18:52,617   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T18:18:52,617   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:18:52,618     138 |   if (&rhs == NULL)
2023-09-08T18:18:52,618         |   ^~
2023-09-08T18:18:55,725   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:18:55,726                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:18:55,726                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2023-09-08T18:18:55,727   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:18:55,728      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:18:55,728         |                           ^~~~~~~~~~~~~~
2023-09-08T18:18:55,729   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:18:55,729                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:18:55,730   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:18:55,731     117 |     struct unary_function
2023-09-08T18:18:55,731         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:07,322   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T18:19:07,322   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2023-09-08T18:19:07,323      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T18:19:07,324         |                       ^
2023-09-08T18:19:07,324   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2023-09-08T18:19:07,325      48 | IdList::IdList(const std::string& commaSeparated)
2023-09-08T18:19:07,326         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T18:19:07,625   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T18:19:07,626   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:19:07,627      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T18:19:07,627         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T18:19:18,221   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:19:18,222                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:19:18,222                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2023-09-08T18:19:18,223   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:18,224      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:18,224         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:18,225   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:18,226                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:19:18,226   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:18,227     117 |     struct unary_function
2023-09-08T18:19:18,227         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:33,834   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:19:33,835                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:19:33,835                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2023-09-08T18:19:33,836   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:33,836      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:33,837         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:33,837   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:33,838                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:19:33,838   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:33,839     117 |     struct unary_function
2023-09-08T18:19:33,840         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:38,722   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:19:38,723                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:19:38,723                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2023-09-08T18:19:38,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:38,724      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:38,725         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:38,726   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:38,727                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:19:38,728   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:38,728     117 |     struct unary_function
2023-09-08T18:19:38,729         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:45,814   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:19:45,814                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:19:45,815                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2023-09-08T18:19:45,816                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2023-09-08T18:19:45,816   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:45,817      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:45,818         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:45,818   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:45,819                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:19:45,820                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2023-09-08T18:19:45,820                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2023-09-08T18:19:45,821   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:45,822     117 |     struct unary_function
2023-09-08T18:19:45,823         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:51,510   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:19:51,511                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:19:51,512                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2023-09-08T18:19:51,513                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2023-09-08T18:19:51,514   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:51,514      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:51,515         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:51,515   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:51,516                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:19:51,516                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2023-09-08T18:19:51,517                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2023-09-08T18:19:51,517   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:51,518     117 |     struct unary_function
2023-09-08T18:19:51,519         |            ^~~~~~~~~~~~~~
2023-09-08T18:19:58,023   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:19:58,023                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:19:58,024                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2023-09-08T18:19:58,024                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2023-09-08T18:19:58,025   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:19:58,026      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:19:58,026         |                           ^~~~~~~~~~~~~~
2023-09-08T18:19:58,027   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:19:58,028                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:19:58,028                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2023-09-08T18:19:58,029                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2023-09-08T18:19:58,030   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:19:58,030     117 |     struct unary_function
2023-09-08T18:19:58,031         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:03,717   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:20:03,718                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:20:03,718                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2023-09-08T18:20:03,719                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2023-09-08T18:20:03,720   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:03,721      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:03,721         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:03,722   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:03,723                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:20:03,723                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2023-09-08T18:20:03,724                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2023-09-08T18:20:03,725   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:03,725     117 |     struct unary_function
2023-09-08T18:20:03,726         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:09,143   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:20:09,144                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:20:09,145                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2023-09-08T18:20:09,146                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2023-09-08T18:20:09,147   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:09,147      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:09,148         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:09,148   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:09,149                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:20:09,149                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2023-09-08T18:20:09,150                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2023-09-08T18:20:09,150   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:09,151     117 |     struct unary_function
2023-09-08T18:20:09,151         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:14,521   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:14,522                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:14,522                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:20:14,523                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2023-09-08T18:20:14,524                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2023-09-08T18:20:14,524   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:14,525      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:14,525         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:14,526   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:14,527                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T18:20:14,527                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2023-09-08T18:20:14,528                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2023-09-08T18:20:14,529   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:14,529     117 |     struct unary_function
2023-09-08T18:20:14,530         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:18,891   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:18,891                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:18,892                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2023-09-08T18:20:18,893   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:18,893      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:18,894         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:18,895   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:18,896                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:20:18,896   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:18,897     117 |     struct unary_function
2023-09-08T18:20:18,897         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:22,711   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:22,712                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:22,712                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2023-09-08T18:20:22,713   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:22,714      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:22,715         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:22,716   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:22,716                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:20:22,717   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:22,718     117 |     struct unary_function
2023-09-08T18:20:22,719         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:27,043   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:27,043                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:27,044                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2023-09-08T18:20:27,044   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:27,045      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:27,045         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:27,046   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:27,046                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:20:27,047   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:27,048     117 |     struct unary_function
2023-09-08T18:20:27,048         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:31,127   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:20:31,127                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:20:31,128                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:20:31,128                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:20:31,129                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T18:20:31,129                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2023-09-08T18:20:31,130                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2023-09-08T18:20:31,131   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:31,132      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:31,132         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:31,133   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:31,134                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:20:31,135                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:20:31,135                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2023-09-08T18:20:31,136   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:31,137     117 |     struct unary_function
2023-09-08T18:20:31,138         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:37,229   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:20:37,229                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:20:37,230                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:20:37,231                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:20:37,231                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T18:20:37,232                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T18:20:37,233                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2023-09-08T18:20:37,233   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:37,234      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:37,235         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:37,236   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:37,236                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:20:37,237                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:20:37,238                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2023-09-08T18:20:37,239   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:37,240     117 |     struct unary_function
2023-09-08T18:20:37,240         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:41,942   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:20:41,943                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T18:20:41,944                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T18:20:41,945                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T18:20:41,945                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T18:20:41,946                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2023-09-08T18:20:41,947   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:41,947      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:41,948         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:41,948   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:41,949                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:20:41,949                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:20:41,950                    from ./base//sbml/validator/SBMLValidator.h:73:
2023-09-08T18:20:41,950   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:41,951     117 |     struct unary_function
2023-09-08T18:20:41,952         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:42,273   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T18:20:42,274   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:20:42,274      59 |   if (&orig == NULL)
2023-09-08T18:20:42,275         |             ^
2023-09-08T18:20:42,276   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2023-09-08T18:20:42,277      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2023-09-08T18:20:42,278         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:20:42,278   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T18:20:42,279   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:20:42,280      87 |   if (&rhs == NULL)
2023-09-08T18:20:42,281         |            ^
2023-09-08T18:20:42,282   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2023-09-08T18:20:42,282      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2023-09-08T18:20:42,283         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:20:42,284   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T18:20:42,284   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T18:20:42,285     168 |   if (&msg == NULL) return;
2023-09-08T18:20:42,286         |            ^
2023-09-08T18:20:42,287   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2023-09-08T18:20:42,287     166 | SBMLValidator::logFailure (const SBMLError& msg)
2023-09-08T18:20:42,288         |                            ~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:20:42,289   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T18:20:42,289   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:20:42,290     182 |   if (&filename == NULL) return 0;
2023-09-08T18:20:42,291         |                 ^
2023-09-08T18:20:42,292   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2023-09-08T18:20:42,292     180 | SBMLValidator::validate (const std::string& filename)
2023-09-08T18:20:42,293         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:20:42,796   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T18:20:42,796   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:20:42,797      87 |   if (&rhs == NULL)
2023-09-08T18:20:42,797         |   ^~
2023-09-08T18:20:42,798   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T18:20:42,798   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:20:42,799      59 |   if (&orig == NULL)
2023-09-08T18:20:42,799         |   ^~
2023-09-08T18:20:42,801   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T18:20:42,802   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:20:42,802     168 |   if (&msg == NULL) return;
2023-09-08T18:20:42,803         |   ^~
2023-09-08T18:20:42,803   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T18:20:42,804   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:20:42,805     182 |   if (&filename == NULL) return 0;
2023-09-08T18:20:42,805         |   ^~
2023-09-08T18:20:45,994   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:45,995                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:45,996                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2023-09-08T18:20:45,996   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:45,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:45,998         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:45,999   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:45,999                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:20:46,000   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:46,001     117 |     struct unary_function
2023-09-08T18:20:46,002         |            ^~~~~~~~~~~~~~
2023-09-08T18:20:59,030   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:20:59,030                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:20:59,031                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2023-09-08T18:20:59,032   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:20:59,032      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:20:59,033         |                           ^~~~~~~~~~~~~~
2023-09-08T18:20:59,034   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:20:59,035                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T18:20:59,035   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:20:59,036     117 |     struct unary_function
2023-09-08T18:20:59,037         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:10,528   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:21:10,529                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:21:10,530                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:21:10,531                    from ./base/sbml/validator/VConstraint.cpp:33:
2023-09-08T18:21:10,531   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:10,532      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:10,533         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:10,533   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:10,534                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:21:10,534   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:10,535     117 |     struct unary_function
2023-09-08T18:21:10,536         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:10,981   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2023-09-08T18:21:10,982   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2023-09-08T18:21:10,983      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T18:21:10,983         |               ^
2023-09-08T18:21:10,984   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2023-09-08T18:21:10,985      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T18:21:10,985         |                          ~~~~~~~~~~~~~^~~~~~
2023-09-08T18:21:10,986   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T18:21:10,986      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T18:21:10,987         |                                   ^
2023-09-08T18:21:10,988   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2023-09-08T18:21:10,988      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T18:21:10,989         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:21:11,440   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:11,441      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T18:21:11,442         |               ^
2023-09-08T18:21:11,443   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:11,444      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T18:21:11,444         |                                   ^
2023-09-08T18:21:14,316   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2023-09-08T18:21:14,317                    from ./base/sbml/validator/Validator.cpp:39:
2023-09-08T18:21:14,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:14,318      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:14,319         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:14,320   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:21:14,320                    from ./base/sbml/validator/Validator.cpp:34:
2023-09-08T18:21:14,321   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:14,322     117 |     struct unary_function
2023-09-08T18:21:14,322         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:14,914   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:14,914      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T18:21:14,915         |                       ^~~~~~~~~~~~~~
2023-09-08T18:21:14,916   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:14,917     117 |     struct unary_function
2023-09-08T18:21:14,917         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:15,383   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T18:21:15,384   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T18:21:15,385     709 |   if (&msg == NULL) return;
2023-09-08T18:21:15,385         |            ^
2023-09-08T18:21:15,386   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2023-09-08T18:21:15,386     707 | Validator::logFailure (const SBMLError& msg)
2023-09-08T18:21:15,387         |                        ~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:21:15,388   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T18:21:15,388   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T18:21:15,389     754 |   if (&d == NULL) return 0;
2023-09-08T18:21:15,389         |          ^
2023-09-08T18:21:15,390   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2023-09-08T18:21:15,391     752 | Validator::validate (const SBMLDocument& d)
2023-09-08T18:21:15,391         |                      ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T18:21:15,394   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T18:21:15,394   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:21:15,395     815 |   if (&filename == NULL) return 0;
2023-09-08T18:21:15,396         |                 ^
2023-09-08T18:21:15,397   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2023-09-08T18:21:15,397     813 | Validator::validate (const std::string& filename)
2023-09-08T18:21:15,398         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:21:16,898   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T18:21:16,899   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:16,899     709 |   if (&msg == NULL) return;
2023-09-08T18:21:16,900         |   ^~
2023-09-08T18:21:16,923   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T18:21:16,924   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:16,925     754 |   if (&d == NULL) return 0;
2023-09-08T18:21:16,926         |   ^~
2023-09-08T18:21:16,927   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T18:21:16,927   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:16,928     815 |   if (&filename == NULL) return 0;
2023-09-08T18:21:16,929         |   ^~
2023-09-08T18:21:23,512   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:23,513                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:23,513                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2023-09-08T18:21:23,514   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:23,515      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:23,516         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:23,517   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:23,517                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:23,518   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:23,518     117 |     struct unary_function
2023-09-08T18:21:23,519         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:28,328   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:28,328                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:28,329                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2023-09-08T18:21:28,329   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:28,330      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:28,330         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:28,331   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:28,331                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:28,332   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:28,332     117 |     struct unary_function
2023-09-08T18:21:28,333         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:32,657   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:32,658                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:32,659                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2023-09-08T18:21:32,659   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:32,660      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:32,660         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:32,661   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:32,662                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:32,663   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:32,663     117 |     struct unary_function
2023-09-08T18:21:32,664         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:40,887   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:40,888                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:40,888                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2023-09-08T18:21:40,889   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:40,890      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:40,891         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:40,891   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:40,892                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:40,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:40,893     117 |     struct unary_function
2023-09-08T18:21:40,894         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:45,543   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:45,543                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:45,544                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2023-09-08T18:21:45,544   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:45,545      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:45,546         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:45,547   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:45,548                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:45,548   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:45,549     117 |     struct unary_function
2023-09-08T18:21:45,550         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:45,871   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:21:45,872   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:21:45,872     104 |   if (&(node) == NULL)
2023-09-08T18:21:45,873         |               ^
2023-09-08T18:21:45,873   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2023-09-08T18:21:45,874     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:21:45,874         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:21:46,380   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:46,381     104 |   if (&(node) == NULL)
2023-09-08T18:21:46,381         |   ^~
2023-09-08T18:21:49,787   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:49,788                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:49,788                    from ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:35:
2023-09-08T18:21:49,789   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:49,789      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:49,790         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:49,791   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:49,791                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:49,792   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:49,793     117 |     struct unary_function
2023-09-08T18:21:49,793         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:50,114   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp: In member function ‘virtual void CiElementNot0DComp::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:21:50,115   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:108:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:21:50,116     108 |   if (&(node) == NULL)
2023-09-08T18:21:50,116         |               ^
2023-09-08T18:21:50,117   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:101:63: note: ‘node’ declared here
2023-09-08T18:21:50,118     101 | CiElementNot0DComp::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:21:50,118         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:21:50,617   ./base/sbml/validator/constraints/CiElementNot0DComp.cpp:108:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:21:50,618     108 |   if (&(node) == NULL)
2023-09-08T18:21:50,618         |   ^~
2023-09-08T18:21:53,959   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:21:53,960                    from ./base//sbml/Model.h:446,
2023-09-08T18:21:53,960                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2023-09-08T18:21:53,961   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:53,962      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:53,963         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:53,963   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:53,964                    from ./base//sbml/Model.h:444:
2023-09-08T18:21:53,965   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:53,966     117 |     struct unary_function
2023-09-08T18:21:53,966         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:54,303   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:54,304     119 | struct CycleContains : public unary_function<IdList, bool>
2023-09-08T18:21:54,305         |                               ^~~~~~~~~~~~~~
2023-09-08T18:21:54,307   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:54,308     117 |     struct unary_function
2023-09-08T18:21:54,309         |            ^~~~~~~~~~~~~~
2023-09-08T18:21:59,153   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:21:59,153                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:21:59,154                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:21:59,155                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2023-09-08T18:21:59,155   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:21:59,156      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:21:59,156         |                           ^~~~~~~~~~~~~~
2023-09-08T18:21:59,157   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:21:59,157                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:21:59,158                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:21:59,159                    from ./base//sbml/SBO.h:196,
2023-09-08T18:21:59,159                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2023-09-08T18:21:59,160   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:21:59,161     117 |     struct unary_function
2023-09-08T18:21:59,161         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:03,317   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:03,317                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:03,318                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2023-09-08T18:22:03,319   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:03,320      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:03,320         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:03,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:03,322                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:03,322   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:03,323     117 |     struct unary_function
2023-09-08T18:22:03,324         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:07,824   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:07,825                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:07,825                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2023-09-08T18:22:07,826   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:07,827      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:07,827         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:07,828   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:07,829                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:07,829   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:07,830     117 |     struct unary_function
2023-09-08T18:22:07,831         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:08,148   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:22:08,148   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:22:08,149     101 |   if (&(node) == NULL)
2023-09-08T18:22:08,150         |               ^
2023-09-08T18:22:08,150   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2023-09-08T18:22:08,151      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:22:08,151         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:22:08,641   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:22:08,642     101 |   if (&(node) == NULL)
2023-09-08T18:22:08,643         |   ^~
2023-09-08T18:22:11,922   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:11,923                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:11,923                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2023-09-08T18:22:11,924   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:11,924      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:11,925         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:11,925   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:11,926                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:11,927   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:11,927     117 |     struct unary_function
2023-09-08T18:22:11,928         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:16,502   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:16,503                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:16,504                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2023-09-08T18:22:16,504   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:16,505      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:16,506         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:16,507   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:16,507                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:16,508   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:16,508     117 |     struct unary_function
2023-09-08T18:22:16,509         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:16,829   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:22:16,830   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:22:16,830     103 |   if (&(node) == NULL)
2023-09-08T18:22:16,831         |               ^
2023-09-08T18:22:16,832   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2023-09-08T18:22:16,833     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:22:16,833         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:22:17,332   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:22:17,332     103 |   if (&(node) == NULL)
2023-09-08T18:22:17,333         |   ^~
2023-09-08T18:22:20,673   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:20,673                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:20,674                    from ./base/sbml/validator/constraints/FunctionDefinitionRecursion.cpp:35:
2023-09-08T18:22:20,675   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:20,675      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:20,676         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:20,676   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:20,677                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:20,677   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:20,678     117 |     struct unary_function
2023-09-08T18:22:20,678         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:26,873   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:26,874                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:26,874                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2023-09-08T18:22:26,875   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:26,875      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:26,876         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:26,877   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:26,877                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:26,878   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:26,879     117 |     struct unary_function
2023-09-08T18:22:26,880         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:30,904   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:30,905                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:30,905                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2023-09-08T18:22:30,906   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:30,907      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:30,907         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:30,908   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:30,909                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:30,909   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:30,910     117 |     struct unary_function
2023-09-08T18:22:30,910         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:31,231   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:22:31,231   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:22:31,232     104 |   if (&(node) == NULL)
2023-09-08T18:22:31,233         |               ^
2023-09-08T18:22:31,233   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T18:22:31,234     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:22:31,235         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:22:31,735   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:22:31,736     104 |   if (&(node) == NULL)
2023-09-08T18:22:31,737         |   ^~
2023-09-08T18:22:35,147   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:35,148                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:35,148                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2023-09-08T18:22:35,149   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:35,149      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:35,150         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:35,150   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:35,151                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:35,151   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:35,152     117 |     struct unary_function
2023-09-08T18:22:35,152         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:39,268   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:22:39,269                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:22:39,269                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:22:39,270                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T18:22:39,270                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2023-09-08T18:22:39,271   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:39,271      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:39,272         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:39,273   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:39,274                    from ./base/sbml/validator/constraints/IdBase.h:42:
2023-09-08T18:22:39,274   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:39,275     117 |     struct unary_function
2023-09-08T18:22:39,275         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:43,254   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:22:43,255                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:22:43,256                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:22:43,257                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2023-09-08T18:22:43,257   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:43,258      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:43,259         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:43,259   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:43,260                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:22:43,261   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:43,261     117 |     struct unary_function
2023-09-08T18:22:43,262         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:47,263   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:22:47,264                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:22:47,264                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:22:47,265                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2023-09-08T18:22:47,266   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:47,266      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:47,267         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:47,268   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:47,268                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:22:47,269                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:22:47,269                    from ./base//sbml/SBO.h:196,
2023-09-08T18:22:47,270                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2023-09-08T18:22:47,270   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:47,271     117 |     struct unary_function
2023-09-08T18:22:47,271         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:51,082   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:51,083                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:51,083                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2023-09-08T18:22:51,084   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:51,084      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:51,085         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:51,085   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:51,086                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:51,086   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:51,087     117 |     struct unary_function
2023-09-08T18:22:51,087         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:55,808   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:22:55,809                    from ./base//sbml/Model.h:446,
2023-09-08T18:22:55,809                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2023-09-08T18:22:55,810   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:55,811      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:55,811         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:55,812   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:55,813                    from ./base//sbml/Model.h:444:
2023-09-08T18:22:55,813   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:55,814     117 |     struct unary_function
2023-09-08T18:22:55,815         |            ^~~~~~~~~~~~~~
2023-09-08T18:22:59,913   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:22:59,914                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:22:59,914                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2023-09-08T18:22:59,915   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:22:59,916      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:22:59,916         |                           ^~~~~~~~~~~~~~
2023-09-08T18:22:59,917   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:22:59,918                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:22:59,918                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:22:59,919                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:22:59,919                    from ./base//sbml/SBase.h:145,
2023-09-08T18:22:59,920                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2023-09-08T18:22:59,921   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:22:59,922     117 |     struct unary_function
2023-09-08T18:22:59,922         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:03,693   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:23:03,694                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:23:03,695                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2023-09-08T18:23:03,696   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:03,696      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:03,697         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:03,697   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:03,698                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:23:03,698                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:23:03,699                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:23:03,699                    from ./base//sbml/SBase.h:145,
2023-09-08T18:23:03,699                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2023-09-08T18:23:03,700   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:03,700     117 |     struct unary_function
2023-09-08T18:23:03,701         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:07,741   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:23:07,741                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:23:07,742                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2023-09-08T18:23:07,743   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:07,743      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:07,744         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:07,745   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:07,746                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:23:07,747                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:23:07,747                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:23:07,748                    from ./base//sbml/SBase.h:145,
2023-09-08T18:23:07,749                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2023-09-08T18:23:07,749   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:07,750     117 |     struct unary_function
2023-09-08T18:23:07,751         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:11,544   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:23:11,545                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:23:11,545                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2023-09-08T18:23:11,546   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:11,547      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:11,547         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:11,548   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:11,549                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:23:11,550                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:23:11,550                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:23:11,551                    from ./base//sbml/SBase.h:145,
2023-09-08T18:23:11,552                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2023-09-08T18:23:11,552   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:11,553     117 |     struct unary_function
2023-09-08T18:23:11,554         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:15,323   In file included from ./base//sbml/Rule.h:141,
2023-09-08T18:23:15,323                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T18:23:15,324                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2023-09-08T18:23:15,324   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:15,325      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:15,326         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:15,326   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:15,327                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:23:15,327                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:23:15,328                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:23:15,328                    from ./base//sbml/SBase.h:145,
2023-09-08T18:23:15,329                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2023-09-08T18:23:15,329   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:15,330     117 |     struct unary_function
2023-09-08T18:23:15,330         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:19,159   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:23:19,160                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:23:19,160                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:23:19,161                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2023-09-08T18:23:19,161   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:19,162      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:19,163         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:19,164   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:19,164                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:23:19,165                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:23:19,166                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:23:19,166                    from ./base//sbml/SBase.h:145,
2023-09-08T18:23:19,167                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2023-09-08T18:23:19,168   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:19,169     117 |     struct unary_function
2023-09-08T18:23:19,169         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:23,054   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:23,055                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:23,055                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2023-09-08T18:23:23,056   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:23,057      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:23,057         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:23,058   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:23,059                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:23,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:23,060     117 |     struct unary_function
2023-09-08T18:23:23,061         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:23,380   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:23:23,381   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:23:23,382     104 |   if (&(node) == NULL)
2023-09-08T18:23:23,383         |               ^
2023-09-08T18:23:23,383   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2023-09-08T18:23:23,384     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:23:23,384         |                                             ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:23:23,870   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:23:23,871     104 |   if (&(node) == NULL)
2023-09-08T18:23:23,871         |   ^~
2023-09-08T18:23:27,147   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:27,148                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:27,148                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2023-09-08T18:23:27,149   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:27,150      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:27,150         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:27,151   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:27,151                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:27,152   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:27,152     117 |     struct unary_function
2023-09-08T18:23:27,153         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:27,474   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:23:27,475   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:23:27,475     104 |   if (&(node) == NULL)
2023-09-08T18:23:27,476         |               ^
2023-09-08T18:23:27,477   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T18:23:27,478     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:23:27,479         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:23:27,987   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:23:27,988     104 |   if (&(node) == NULL)
2023-09-08T18:23:27,989         |   ^~
2023-09-08T18:23:31,325   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:31,325                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:31,326                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2023-09-08T18:23:31,326   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:31,327      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:31,328         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:31,328   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:31,329                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:31,330   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:31,330     117 |     struct unary_function
2023-09-08T18:23:31,331         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:35,839   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:35,840                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:35,841                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2023-09-08T18:23:35,842   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:35,842      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:35,843         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:35,843   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:35,844                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:35,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:35,845     117 |     struct unary_function
2023-09-08T18:23:35,845         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:36,173   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:23:36,174   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:23:36,174     100 |   if (&(node) == NULL)
2023-09-08T18:23:36,175         |               ^
2023-09-08T18:23:36,176   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2023-09-08T18:23:36,176      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:23:36,177         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:23:36,665   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:23:36,666     100 |   if (&(node) == NULL)
2023-09-08T18:23:36,666         |   ^~
2023-09-08T18:23:39,928   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:39,929                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:39,929                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2023-09-08T18:23:39,930   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:39,931      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:39,932         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:39,932   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:39,933                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:39,934   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:39,935     117 |     struct unary_function
2023-09-08T18:23:39,935         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:44,433   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:23:44,434                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:23:44,434                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:23:44,435                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2023-09-08T18:23:44,435   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:44,436      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:44,437         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:44,437   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:44,438                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:23:44,439   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:44,440     117 |     struct unary_function
2023-09-08T18:23:44,440         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:48,173   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:23:48,173                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:23:48,174                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:23:48,175                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2023-09-08T18:23:48,175   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:48,176      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:48,176         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:48,177   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:48,177                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T18:23:48,178   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:48,178     117 |     struct unary_function
2023-09-08T18:23:48,179         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:52,073   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:52,074                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:52,074                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2023-09-08T18:23:52,075   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:52,075      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:52,076         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:52,076   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:52,077                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:52,078   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:52,079     117 |     struct unary_function
2023-09-08T18:23:52,079         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:52,400   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:23:52,401   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:23:52,401     100 |   if (&(node) == NULL)
2023-09-08T18:23:52,402         |               ^
2023-09-08T18:23:52,403   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2023-09-08T18:23:52,403      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:23:52,404         |                                                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:23:52,909   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:23:52,910     100 |   if (&(node) == NULL)
2023-09-08T18:23:52,911         |   ^~
2023-09-08T18:23:56,362   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:23:56,362                    from ./base//sbml/Model.h:446,
2023-09-08T18:23:56,363                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2023-09-08T18:23:56,364   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:23:56,364      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:23:56,365         |                           ^~~~~~~~~~~~~~
2023-09-08T18:23:56,366   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:23:56,366                    from ./base//sbml/Model.h:444:
2023-09-08T18:23:56,367   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:23:56,367     117 |     struct unary_function
2023-09-08T18:23:56,368         |            ^~~~~~~~~~~~~~
2023-09-08T18:23:56,686   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:23:56,687   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:23:56,687     105 |   if (&(node) == NULL)
2023-09-08T18:23:56,688         |               ^
2023-09-08T18:23:56,688   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2023-09-08T18:23:56,689     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:23:56,689         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:23:57,181   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:23:57,181     105 |   if (&(node) == NULL)
2023-09-08T18:23:57,182         |   ^~
2023-09-08T18:24:00,460   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:00,460                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:00,460                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2023-09-08T18:24:00,461   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:00,462      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:00,462         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:00,463   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:00,463                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:00,464   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:00,465     117 |     struct unary_function
2023-09-08T18:24:00,465         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:00,783   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:24:00,784   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:24:00,785     104 |   if (&(node) == NULL)
2023-09-08T18:24:00,785         |               ^
2023-09-08T18:24:00,786   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2023-09-08T18:24:00,787     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:24:00,788         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:24:01,275   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:24:01,276     104 |   if (&(node) == NULL)
2023-09-08T18:24:01,276         |   ^~
2023-09-08T18:24:04,772   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:04,773                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:04,773                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2023-09-08T18:24:04,774   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:04,775      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:04,776         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:04,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:04,777                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:04,778   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:04,779     117 |     struct unary_function
2023-09-08T18:24:04,780         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:07,218   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2023-09-08T18:24:07,219   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2023-09-08T18:24:07,220     188 |       sprintf(react, "KL_%u", n);
2023-09-08T18:24:07,220         |                          ^~
2023-09-08T18:24:07,221   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2023-09-08T18:24:07,221     188 |       sprintf(react, "KL_%u", n);
2023-09-08T18:24:07,222         |                      ^~~~~~~
2023-09-08T18:24:07,222   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2023-09-08T18:24:07,223     188 |       sprintf(react, "KL_%u", n);
2023-09-08T18:24:07,223         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:24:07,224   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2023-09-08T18:24:07,224     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T18:24:07,225         |                         ^~
2023-09-08T18:24:07,225   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2023-09-08T18:24:07,226     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T18:24:07,226         |                   ^~~~~~~~~
2023-09-08T18:24:07,227   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2023-09-08T18:24:07,228     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T18:24:07,229         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T18:24:17,525   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:24:17,526                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:24:17,526                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:24:17,527                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2023-09-08T18:24:17,528                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2023-09-08T18:24:17,528   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:17,529      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:17,530         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:17,530   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:17,531                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2023-09-08T18:24:17,532   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:17,532     117 |     struct unary_function
2023-09-08T18:24:17,533         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:21,313   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:21,314                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:21,314                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2023-09-08T18:24:21,315   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:21,316      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:21,317         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:21,317   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:21,318                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:21,319   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:21,319     117 |     struct unary_function
2023-09-08T18:24:21,320         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:21,637   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:24:21,638   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:24:21,639     100 |   if (&(node) == NULL)
2023-09-08T18:24:21,639         |               ^
2023-09-08T18:24:21,640   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2023-09-08T18:24:21,640      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:24:21,641         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:24:22,129   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:24:22,130     100 |   if (&(node) == NULL)
2023-09-08T18:24:22,130         |   ^~
2023-09-08T18:24:25,399   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:25,400                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:25,401                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2023-09-08T18:24:25,401   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:25,402      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:25,402         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:25,403   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:25,403                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:25,404   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:25,404     117 |     struct unary_function
2023-09-08T18:24:25,405         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:25,727   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:24:25,727   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:24:25,728     103 |   if (&(node) == NULL)
2023-09-08T18:24:25,729         |               ^
2023-09-08T18:24:25,729   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2023-09-08T18:24:25,730     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:24:25,731         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:24:26,222   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:24:26,223     103 |   if (&(node) == NULL)
2023-09-08T18:24:26,223         |   ^~
2023-09-08T18:24:29,547   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:29,547                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:29,548                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2023-09-08T18:24:29,548   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:29,549      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:29,550         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:29,550   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:29,551                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:29,552   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:29,553     117 |     struct unary_function
2023-09-08T18:24:29,553         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:34,789   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:24:34,789                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:24:34,790                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:24:34,790                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2023-09-08T18:24:34,791   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:34,792      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:34,792         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:34,793   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:34,793                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:24:34,794                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:24:34,795                    from ./base//sbml/SBO.h:196,
2023-09-08T18:24:34,795                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2023-09-08T18:24:34,796   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:34,796     117 |     struct unary_function
2023-09-08T18:24:34,797         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:38,765   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:38,766                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:38,767                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2023-09-08T18:24:38,767   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:38,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:38,768         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:38,769   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:38,770                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:38,771   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:38,771     117 |     struct unary_function
2023-09-08T18:24:38,772         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:43,036   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:43,037                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:43,037                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2023-09-08T18:24:43,038   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:43,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:43,040         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:43,040   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:43,041                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:43,042   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:43,043     117 |     struct unary_function
2023-09-08T18:24:43,044         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:47,372   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:24:47,373                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:24:47,374                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:24:47,375                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T18:24:47,375                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2023-09-08T18:24:47,376                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2023-09-08T18:24:47,377   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:47,378      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:47,378         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:47,379   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:47,379                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T18:24:47,380                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T18:24:47,380                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T18:24:47,381                    from ./base//sbml/SBase.h:145,
2023-09-08T18:24:47,381                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2023-09-08T18:24:47,382   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:47,383     117 |     struct unary_function
2023-09-08T18:24:47,383         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:52,379   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:52,380                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:52,381                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2023-09-08T18:24:52,381   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:52,382      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:52,383         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:52,383   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:52,384                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:52,385   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:52,386     117 |     struct unary_function
2023-09-08T18:24:52,387         |            ^~~~~~~~~~~~~~
2023-09-08T18:24:56,470   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:24:56,470                    from ./base//sbml/Model.h:446,
2023-09-08T18:24:56,471                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2023-09-08T18:24:56,471   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:24:56,472      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:24:56,473         |                           ^~~~~~~~~~~~~~
2023-09-08T18:24:56,474   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:24:56,474                    from ./base//sbml/Model.h:444:
2023-09-08T18:24:56,475   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:24:56,476     117 |     struct unary_function
2023-09-08T18:24:56,476         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:00,307   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:00,308                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:00,308                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2023-09-08T18:25:00,309   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:00,310      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:00,310         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:00,311   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:00,312                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:00,313   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:00,314     117 |     struct unary_function
2023-09-08T18:25:00,315         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:04,166   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:25:04,166                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:25:04,167                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:25:04,167                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2023-09-08T18:25:04,168                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2023-09-08T18:25:04,168   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:04,169      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:04,169         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:04,170   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:04,170                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2023-09-08T18:25:04,171   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:04,172     117 |     struct unary_function
2023-09-08T18:25:04,172         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:09,569   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:09,570                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:09,571                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2023-09-08T18:25:09,571   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:09,572      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:09,573         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:09,574   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:09,574                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:09,575   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:09,576     117 |     struct unary_function
2023-09-08T18:25:09,577         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:13,918   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:13,919                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:13,920                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2023-09-08T18:25:13,920   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:13,921      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:13,922         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:13,922   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:13,923                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:13,924   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:13,924     117 |     struct unary_function
2023-09-08T18:25:13,925         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:17,754   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:17,755                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:17,756                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2023-09-08T18:25:17,757   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:17,757      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:17,758         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:17,759   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:17,759                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:17,760   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:17,761     117 |     struct unary_function
2023-09-08T18:25:17,762         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:21,814   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:21,815                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:21,815                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2023-09-08T18:25:21,816   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:21,816      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:21,817         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:21,817   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:21,818                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:21,818   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:21,819     117 |     struct unary_function
2023-09-08T18:25:21,819         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:25,883   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:25,884                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:25,885                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2023-09-08T18:25:25,885   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:25,886      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:25,886         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:25,887   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:25,887                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:25,888   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:25,889     117 |     struct unary_function
2023-09-08T18:25:25,890         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:30,384   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:30,384                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:30,385                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2023-09-08T18:25:30,385   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:30,386      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:30,387         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:30,388   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:30,389                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:30,389   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:30,390     117 |     struct unary_function
2023-09-08T18:25:30,391         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:34,311   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T18:25:34,312                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T18:25:34,313                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T18:25:34,313                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2023-09-08T18:25:34,314   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:34,315      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:34,315         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:34,316   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:34,317                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T18:25:34,318                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T18:25:34,318                    from ./base//sbml/SBO.h:196,
2023-09-08T18:25:34,319                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2023-09-08T18:25:34,320   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:34,320     117 |     struct unary_function
2023-09-08T18:25:34,321         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:38,315   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:38,316                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:38,316                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2023-09-08T18:25:38,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:38,317      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:38,318         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:38,318   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:38,319                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:38,319   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:38,320     117 |     struct unary_function
2023-09-08T18:25:38,321         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:42,477   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T18:25:42,477                    from ./base//sbml/Model.h:446,
2023-09-08T18:25:42,478                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2023-09-08T18:25:42,478   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:25:42,479      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T18:25:42,479         |                           ^~~~~~~~~~~~~~
2023-09-08T18:25:42,480   In file included from /usr/include/c++/12/string:48,
2023-09-08T18:25:42,481                    from ./base//sbml/Model.h:444:
2023-09-08T18:25:42,482   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:25:42,482     117 |     struct unary_function
2023-09-08T18:25:42,483         |            ^~~~~~~~~~~~~~
2023-09-08T18:25:42,804   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T18:25:42,805   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:25:42,806     100 |   if (&(node) == NULL)
2023-09-08T18:25:42,806         |               ^
2023-09-08T18:25:42,807   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2023-09-08T18:25:42,808      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T18:25:42,809         |                                               ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:43,290   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:43,291     100 |   if (&(node) == NULL)
2023-09-08T18:25:43,291         |   ^~
2023-09-08T18:25:56,694   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T18:25:56,695   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:25:56,696      90 |   if (&orig == NULL)
2023-09-08T18:25:56,696         |             ^
2023-09-08T18:25:56,697   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2023-09-08T18:25:56,698      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2023-09-08T18:25:56,699         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,702   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T18:25:56,703   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:25:56,703     110 |   if (&rhs == NULL)
2023-09-08T18:25:56,704         |            ^
2023-09-08T18:25:56,704   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2023-09-08T18:25:56,705     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2023-09-08T18:25:56,706         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:25:56,706   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:25:56,707   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,707     149 |   if (&name == NULL || &value == NULL
2023-09-08T18:25:56,708         |             ^
2023-09-08T18:25:56,708   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2023-09-08T18:25:56,709     144 | XMLAttributes::add (const std::string& name,
2023-09-08T18:25:56,709         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,710   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,710     149 |   if (&name == NULL || &value == NULL
2023-09-08T18:25:56,711         |                               ^
2023-09-08T18:25:56,711   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2023-09-08T18:25:56,712     145 |                     const std::string& value,
2023-09-08T18:25:56,713         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,713   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2023-09-08T18:25:56,714     150 |                     || &namespaceURI == NULL
2023-09-08T18:25:56,715         |                                      ^
2023-09-08T18:25:56,716   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2023-09-08T18:25:56,716     146 |                     const std::string& namespaceURI,
2023-09-08T18:25:56,717         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T18:25:56,718   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:25:56,719     151 |                     || &prefix == NULL)
2023-09-08T18:25:56,719         |                                ^
2023-09-08T18:25:56,720   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2023-09-08T18:25:56,721     147 |                     const std::string& prefix)
2023-09-08T18:25:56,721         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,722   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T18:25:56,723   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,723     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:25:56,724         |               ^
2023-09-08T18:25:56,725   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2023-09-08T18:25:56,725     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T18:25:56,726         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,727   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,728     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:25:56,729         |                                 ^
2023-09-08T18:25:56,730   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2023-09-08T18:25:56,730     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T18:25:56,731         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,731   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T18:25:56,732   ./base/sbml/xml/XMLAttributes.cpp:281:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,732     281 |   if (&name == NULL) return -1;
2023-09-08T18:25:56,733         |             ^
2023-09-08T18:25:56,733   ./base/sbml/xml/XMLAttributes.cpp:279:45: note: ‘name’ declared here
2023-09-08T18:25:56,734     279 | XMLAttributes::getIndex (const std::string& name) const
2023-09-08T18:25:56,735         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,735   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T18:25:56,736   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,736     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T18:25:56,737         |             ^
2023-09-08T18:25:56,737   ./base/sbml/xml/XMLAttributes.cpp:299:45: note: ‘name’ declared here
2023-09-08T18:25:56,738     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T18:25:56,738         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,739   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:25:56,740     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T18:25:56,741         |                             ^
2023-09-08T18:25:56,741   ./base/sbml/xml/XMLAttributes.cpp:299:70: note: ‘uri’ declared here
2023-09-08T18:25:56,742     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T18:25:56,743         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:25:56,744   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T18:25:56,745   ./base/sbml/xml/XMLAttributes.cpp:320:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,745     320 |   if (&triple  == NULL) return -1;
2023-09-08T18:25:56,746         |                ^
2023-09-08T18:25:56,747   ./base/sbml/xml/XMLAttributes.cpp:318:43: note: ‘triple’ declared here
2023-09-08T18:25:56,747     318 | XMLAttributes::getIndex (const XMLTriple& triple) const
2023-09-08T18:25:56,748         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,749   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,749   ./base/sbml/xml/XMLAttributes.cpp:541:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,750     541 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T18:25:56,751         |                ^
2023-09-08T18:25:56,751   ./base/sbml/xml/XMLAttributes.cpp:529:41: note: ‘value’ declared here
2023-09-08T18:25:56,752     529 |                          , bool&        value
2023-09-08T18:25:56,753         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,754   ./base/sbml/xml/XMLAttributes.cpp:560:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,754     560 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T18:25:56,756         |                                          ^
2023-09-08T18:25:56,756   ./base/sbml/xml/XMLAttributes.cpp:528:47: note: ‘name’ declared here
2023-09-08T18:25:56,757     528 |                          , const std::string& name
2023-09-08T18:25:56,757         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,758   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,758   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,759     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T18:25:56,759         |               ^
2023-09-08T18:25:56,760   ./base/sbml/xml/XMLAttributes.cpp:611:45: note: ‘triple’ declared here
2023-09-08T18:25:56,760     611 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T18:25:56,761         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,761   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,762     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T18:25:56,763         |                                 ^
2023-09-08T18:25:56,763   ./base/sbml/xml/XMLAttributes.cpp:612:45: note: ‘value’ declared here
2023-09-08T18:25:56,764     612 |                          , bool&            value
2023-09-08T18:25:56,764         |                            ~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,765   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,765   ./base/sbml/xml/XMLAttributes.cpp:655:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,766     655 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T18:25:56,767         |                 ^
2023-09-08T18:25:56,768   ./base/sbml/xml/XMLAttributes.cpp:643:41: note: ‘value’ declared here
2023-09-08T18:25:56,768     643 |                          , double&      value
2023-09-08T18:25:56,769         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,770   ./base/sbml/xml/XMLAttributes.cpp:703:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,771     703 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T18:25:56,771         |                                          ^
2023-09-08T18:25:56,772   ./base/sbml/xml/XMLAttributes.cpp:642:47: note: ‘name’ declared here
2023-09-08T18:25:56,773     642 |                          , const std::string& name
2023-09-08T18:25:56,773         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,774   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,775   ./base/sbml/xml/XMLAttributes.cpp:801:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,775     801 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T18:25:56,776         |                                     ^
2023-09-08T18:25:56,777   ./base/sbml/xml/XMLAttributes.cpp:789:41: note: ‘value’ declared here
2023-09-08T18:25:56,777     789 |                          , long&        value
2023-09-08T18:25:56,778         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,779   ./base/sbml/xml/XMLAttributes.cpp:821:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,780     821 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T18:25:56,780         |                                          ^
2023-09-08T18:25:56,781   ./base/sbml/xml/XMLAttributes.cpp:788:65: note: ‘name’ declared here
2023-09-08T18:25:56,781     788 |                                            , const std::string& name
2023-09-08T18:25:56,782         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,782   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,783   ./base/sbml/xml/XMLAttributes.cpp:856:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,783     856 |   if (&triple == NULL) return false;
2023-09-08T18:25:56,784         |               ^
2023-09-08T18:25:56,784   ./base/sbml/xml/XMLAttributes.cpp:849:45: note: ‘triple’ declared here
2023-09-08T18:25:56,785     849 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T18:25:56,785         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,786   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,786   ./base/sbml/xml/XMLAttributes.cpp:945:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,787     945 |   if (&triple == NULL) return false;
2023-09-08T18:25:56,787         |               ^
2023-09-08T18:25:56,788   ./base/sbml/xml/XMLAttributes.cpp:938:45: note: ‘triple’ declared here
2023-09-08T18:25:56,789     938 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T18:25:56,789         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,790   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,791   ./base/sbml/xml/XMLAttributes.cpp:1037:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,791    1037 |   if (&triple == NULL) return false;
2023-09-08T18:25:56,792         |               ^
2023-09-08T18:25:56,793   ./base/sbml/xml/XMLAttributes.cpp:1030:45: note: ‘triple’ declared here
2023-09-08T18:25:56,794    1030 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T18:25:56,794         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:56,795   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,796   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:25:56,797    1091 |   if ( index != -1 && &value != NULL)
2023-09-08T18:25:56,797         |                              ^
2023-09-08T18:25:56,798   ./base/sbml/xml/XMLAttributes.cpp:1083:41: note: ‘value’ declared here
2023-09-08T18:25:56,799    1083 |                          , std::string& value
2023-09-08T18:25:56,799         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T18:25:56,800   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:25:56,801    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T18:25:56,801         |                                                      ^
2023-09-08T18:25:56,802   ./base/sbml/xml/XMLAttributes.cpp:1082:47: note: ‘name’ declared here
2023-09-08T18:25:56,803    1082 |                          , const std::string& name
2023-09-08T18:25:56,803         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:25:56,804   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:56,805   ./base/sbml/xml/XMLAttributes.cpp:1127:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:25:56,806    1127 |   if (&triple == NULL) return false;
2023-09-08T18:25:56,806         |               ^
2023-09-08T18:25:56,807   ./base/sbml/xml/XMLAttributes.cpp:1120:45: note: ‘triple’ declared here
2023-09-08T18:25:56,808    1120 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T18:25:56,808         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:25:57,214   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T18:25:57,215   ./base/sbml/xml/XMLAttributes.cpp:320:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,215     320 |   if (&triple  == NULL) return -1;
2023-09-08T18:25:57,216         |   ^~
2023-09-08T18:25:57,227   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T18:25:57,228   ./base/sbml/xml/XMLAttributes.cpp:281:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,229     281 |   if (&name == NULL) return -1;
2023-09-08T18:25:57,229         |   ^~
2023-09-08T18:25:57,230   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T18:25:57,230   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,231     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T18:25:57,231         |             ^
2023-09-08T18:25:57,232   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,233     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T18:25:57,233         |                             ^
2023-09-08T18:25:57,246   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T18:25:57,247   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,248      90 |   if (&orig == NULL)
2023-09-08T18:25:57,249         |   ^~
2023-09-08T18:25:57,249   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T18:25:57,250   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,251     110 |   if (&rhs == NULL)
2023-09-08T18:25:57,251         |   ^~
2023-09-08T18:25:57,252   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:25:57,253   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,253     149 |   if (&name == NULL || &value == NULL
2023-09-08T18:25:57,254         |             ^
2023-09-08T18:25:57,254   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,255     149 |   if (&name == NULL || &value == NULL
2023-09-08T18:25:57,256         |                               ^
2023-09-08T18:25:57,257   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,257     150 |                     || &namespaceURI == NULL
2023-09-08T18:25:57,258         |                                      ^
2023-09-08T18:25:57,259   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,259     151 |                     || &prefix == NULL)
2023-09-08T18:25:57,260         |                                ^
2023-09-08T18:25:57,261   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T18:25:57,261   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,262     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:25:57,262         |               ^
2023-09-08T18:25:57,263   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,264     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:25:57,264         |                                 ^
2023-09-08T18:25:57,265   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,266   ./base/sbml/xml/XMLAttributes.cpp:560:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,266     560 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T18:25:57,267         |                                 ^
2023-09-08T18:25:57,267   ./base/sbml/xml/XMLAttributes.cpp:541:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,268     541 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T18:25:57,269         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:25:57,269   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,270   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,271     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T18:25:57,271         |               ^
2023-09-08T18:25:57,272   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,273     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T18:25:57,273         |                                 ^
2023-09-08T18:25:57,274   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,275   ./base/sbml/xml/XMLAttributes.cpp:703:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,276     703 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T18:25:57,277         |                                 ^
2023-09-08T18:25:57,277   ./base/sbml/xml/XMLAttributes.cpp:655:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,278     655 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T18:25:57,279         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:25:57,279   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,280   ./base/sbml/xml/XMLAttributes.cpp:821:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,281     821 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T18:25:57,282         |                                 ^
2023-09-08T18:25:57,282   ./base/sbml/xml/XMLAttributes.cpp:801:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,283     801 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T18:25:57,284         |                           ^
2023-09-08T18:25:57,285   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,285   ./base/sbml/xml/XMLAttributes.cpp:856:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,286     856 |   if (&triple == NULL) return false;
2023-09-08T18:25:57,286         |   ^~
2023-09-08T18:25:57,287   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,288   ./base/sbml/xml/XMLAttributes.cpp:945:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,288     945 |   if (&triple == NULL) return false;
2023-09-08T18:25:57,289         |   ^~
2023-09-08T18:25:57,289   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,290   ./base/sbml/xml/XMLAttributes.cpp:1037:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,290    1037 |   if (&triple == NULL) return false;
2023-09-08T18:25:57,291         |   ^~
2023-09-08T18:25:57,292   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,292   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,293    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T18:25:57,293         |                                                      ^
2023-09-08T18:25:57,294   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,295    1091 |   if ( index != -1 && &value != NULL)
2023-09-08T18:25:57,296         |                              ^
2023-09-08T18:25:57,297   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T18:25:57,297   ./base/sbml/xml/XMLAttributes.cpp:1127:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:25:57,298    1127 |   if (&triple == NULL) return false;
2023-09-08T18:25:57,299         |   ^~
2023-09-08T18:26:04,892   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T18:26:04,892   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T18:26:04,893     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T18:26:04,893         |                       ^
2023-09-08T18:26:04,894   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T18:26:04,895     322 |                     , const std::string& details
2023-09-08T18:26:04,896         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:04,896   ./base/sbml/xml/XMLError.cpp:384:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T18:26:04,897     384 |     if ( &details != NULL && !details.empty() )
2023-09-08T18:26:04,898         |                   ^
2023-09-08T18:26:04,899   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T18:26:04,899     322 |                     , const std::string& details
2023-09-08T18:26:04,900         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:04,901   ./base/sbml/xml/XMLError.cpp:406:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T18:26:04,901     406 |   if (&details == NULL)
2023-09-08T18:26:04,902         |                ^
2023-09-08T18:26:04,902   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T18:26:04,903     322 |                     , const std::string& details
2023-09-08T18:26:04,903         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:04,904   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T18:26:04,905   ./base/sbml/xml/XMLError.cpp:431:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:26:04,905     431 |   if (&orig == NULL)
2023-09-08T18:26:04,906         |             ^
2023-09-08T18:26:04,906   ./base/sbml/xml/XMLError.cpp:429:36: note: ‘orig’ declared here
2023-09-08T18:26:04,907     429 | XMLError::XMLError(const XMLError& orig)
2023-09-08T18:26:04,908         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:04,908   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T18:26:04,909   ./base/sbml/xml/XMLError.cpp:458:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:26:04,910     458 |   if (&rhs == NULL)
2023-09-08T18:26:04,910         |            ^
2023-09-08T18:26:04,911   ./base/sbml/xml/XMLError.cpp:456:37: note: ‘rhs’ declared here
2023-09-08T18:26:04,912     456 | XMLError::operator=(const XMLError& rhs)
2023-09-08T18:26:04,912         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:05,322   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T18:26:05,323   ./base/sbml/xml/XMLError.cpp:431:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:05,324     431 |   if (&orig == NULL)
2023-09-08T18:26:05,325         |   ^~
2023-09-08T18:26:05,325   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T18:26:05,326   ./base/sbml/xml/XMLError.cpp:458:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:05,327     458 |   if (&rhs == NULL)
2023-09-08T18:26:05,327         |   ^~
2023-09-08T18:26:05,328   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T18:26:05,329   ./base/sbml/xml/XMLError.cpp:406:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:05,330     406 |   if (&details == NULL)
2023-09-08T18:26:05,330         |   ^~
2023-09-08T18:26:05,331   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:05,332     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T18:26:05,333         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:26:05,333   ./base/sbml/xml/XMLError.cpp:384:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:05,334     384 |     if ( &details != NULL && !details.empty() )
2023-09-08T18:26:05,335         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T18:26:08,456   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T18:26:08,457      96 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T18:26:08,458         |                        ^~~~~~~~~~~~~~
2023-09-08T18:26:08,460   In file included from /usr/include/c++/12/functional:49,
2023-09-08T18:26:08,461                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2023-09-08T18:26:08,462   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T18:26:08,463     117 |     struct unary_function
2023-09-08T18:26:08,463         |            ^~~~~~~~~~~~~~
2023-09-08T18:26:08,464   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2023-09-08T18:26:08,464   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2023-09-08T18:26:08,465     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T18:26:08,466         |              ^
2023-09-08T18:26:08,466   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2023-09-08T18:26:08,467     118 | XMLErrorLog::add (const XMLError& error)
2023-09-08T18:26:08,467         |                   ~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:08,765   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:08,766     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T18:26:08,766         |   ^~
2023-09-08T18:26:10,781   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T18:26:10,782   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T18:26:10,783      57 |   if (&filename == NULL) return;
2023-09-08T18:26:10,783         |                 ^
2023-09-08T18:26:10,784   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2023-09-08T18:26:10,785      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2023-09-08T18:26:10,785         |                               ~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T18:26:10,978   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T18:26:10,978   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:10,979      57 |   if (&filename == NULL) return;
2023-09-08T18:26:10,980         |   ^~
2023-09-08T18:26:19,388   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T18:26:19,388   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:26:19,389      76 |   if (&orig == NULL)
2023-09-08T18:26:19,389         |             ^
2023-09-08T18:26:19,390   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2023-09-08T18:26:19,391      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2023-09-08T18:26:19,391         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:19,393   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T18:26:19,394   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:26:19,394      93 |   if (&rhs == NULL)
2023-09-08T18:26:19,395         |            ^
2023-09-08T18:26:19,396   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2023-09-08T18:26:19,396      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2023-09-08T18:26:19,397         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:19,398   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T18:26:19,399   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:26:19,399     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:19,400         |            ^
2023-09-08T18:26:19,401   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2023-09-08T18:26:19,402     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T18:26:19,402         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:19,403   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:19,403     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:19,404         |                               ^
2023-09-08T18:26:19,404   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2023-09-08T18:26:19,405     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T18:26:19,406         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:19,421   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T18:26:19,422   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:19,423     322 |   if (&prefix == NULL) return std::string();
2023-09-08T18:26:19,423         |               ^
2023-09-08T18:26:19,424   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2023-09-08T18:26:19,424     320 | XMLNamespaces::getURI (const std::string& prefix) const
2023-09-08T18:26:19,425         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:19,426   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T18:26:19,426   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:26:19,427     348 |   if (&uri == NULL) return false;
2023-09-08T18:26:19,428         |            ^
2023-09-08T18:26:19,429   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2023-09-08T18:26:19,429     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2023-09-08T18:26:19,430         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:19,431   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T18:26:19,432   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:19,433     359 |   if (&prefix == NULL) return false;
2023-09-08T18:26:19,433         |               ^
2023-09-08T18:26:19,434   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2023-09-08T18:26:19,435     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2023-09-08T18:26:19,435         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:19,436   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T18:26:19,437   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:26:19,437     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T18:26:19,438         |            ^
2023-09-08T18:26:19,439   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2023-09-08T18:26:19,440     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T18:26:19,440         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:19,441   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:19,442     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T18:26:19,443         |                               ^
2023-09-08T18:26:19,443   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2023-09-08T18:26:19,444     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T18:26:19,445         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:19,903   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T18:26:19,904   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,904     322 |   if (&prefix == NULL) return std::string();
2023-09-08T18:26:19,905         |   ^~
2023-09-08T18:26:19,905   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T18:26:19,906   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,906     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T18:26:19,907         |            ^
2023-09-08T18:26:19,907   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,908     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T18:26:19,909         |                               ^
2023-09-08T18:26:19,909   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T18:26:19,910   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,910     348 |   if (&uri == NULL) return false;
2023-09-08T18:26:19,911         |   ^~
2023-09-08T18:26:19,912   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T18:26:19,913   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,913     359 |   if (&prefix == NULL) return false;
2023-09-08T18:26:19,914         |   ^~
2023-09-08T18:26:19,915   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T18:26:19,916   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,917      76 |   if (&orig == NULL)
2023-09-08T18:26:19,917         |   ^~
2023-09-08T18:26:19,918   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T18:26:19,919   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,919      93 |   if (&rhs == NULL)
2023-09-08T18:26:19,920         |   ^~
2023-09-08T18:26:19,921   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T18:26:19,922   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,922     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:19,923         |            ^
2023-09-08T18:26:19,924   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:19,925     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:19,925         |                               ^
2023-09-08T18:26:24,335   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T18:26:24,335   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:26:24,336     197 |   if (&rhs == NULL)
2023-09-08T18:26:24,337         |            ^
2023-09-08T18:26:24,338   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2023-09-08T18:26:24,338     195 | XMLNode::operator=(const XMLNode& rhs)
2023-09-08T18:26:24,339         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:24,339   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T18:26:24,340   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:26:24,340     230 |   if (&(node) == NULL)
2023-09-08T18:26:24,341         |               ^
2023-09-08T18:26:24,341   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2023-09-08T18:26:24,342     226 | XMLNode::addChild (const XMLNode& node)
2023-09-08T18:26:24,342         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:24,343   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T18:26:24,344   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T18:26:24,344     267 |   if (&(node) == NULL)
2023-09-08T18:26:24,345         |               ^
2023-09-08T18:26:24,345   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2023-09-08T18:26:24,346     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2023-09-08T18:26:24,346         |                                       ~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:24,348   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T18:26:24,349   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:24,349     413 |   if (&name == NULL) return -1;
2023-09-08T18:26:24,350         |             ^
2023-09-08T18:26:24,351   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2023-09-08T18:26:24,352     411 | XMLNode::getIndex (const std::string& name) const
2023-09-08T18:26:24,352         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:24,353   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T18:26:24,354   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2023-09-08T18:26:24,355     435 |   if (&other == NULL) return false;
2023-09-08T18:26:24,355         |              ^
2023-09-08T18:26:24,356   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2023-09-08T18:26:24,357     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2023-09-08T18:26:24,357         |                 ~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:24,359   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T18:26:24,359   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:26:24,360     507 |   if (&stream == NULL) return;
2023-09-08T18:26:24,361         |               ^
2023-09-08T18:26:24,361   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2023-09-08T18:26:24,362     505 | XMLNode::write (XMLOutputStream& stream) const
2023-09-08T18:26:24,363         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:24,364   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T18:26:24,365   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2023-09-08T18:26:24,366     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T18:26:24,367         |               ^
2023-09-08T18:26:24,367   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2023-09-08T18:26:24,368     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2023-09-08T18:26:24,368         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:24,913   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T18:26:24,914   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,914     413 |   if (&name == NULL) return -1;
2023-09-08T18:26:24,915         |   ^~
2023-09-08T18:26:24,915   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T18:26:24,916   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,916     507 |   if (&stream == NULL) return;
2023-09-08T18:26:24,917         |   ^~
2023-09-08T18:26:24,934   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T18:26:24,934   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,935     197 |   if (&rhs == NULL)
2023-09-08T18:26:24,935         |   ^~
2023-09-08T18:26:24,937   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T18:26:24,938   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,938     230 |   if (&(node) == NULL)
2023-09-08T18:26:24,939         |   ^~
2023-09-08T18:26:24,940   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T18:26:24,940   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,941     267 |   if (&(node) == NULL)
2023-09-08T18:26:24,942         |   ^~
2023-09-08T18:26:24,943   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T18:26:24,943   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,944     435 |   if (&other == NULL) return false;
2023-09-08T18:26:24,945         |   ^~
2023-09-08T18:26:24,946   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T18:26:24,946   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:24,947     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T18:26:24,948         |   ^~
2023-09-08T18:26:31,272   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T18:26:31,273   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T18:26:31,273     220 |   if (&stream == NULL)
2023-09-08T18:26:31,274         |               ^
2023-09-08T18:26:31,275   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2023-09-08T18:26:31,275     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2023-09-08T18:26:31,276         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,277   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,278   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,278     236 |   if(&name == NULL) return;
2023-09-08T18:26:31,279         |            ^
2023-09-08T18:26:31,280   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2023-09-08T18:26:31,280     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2023-09-08T18:26:31,281         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,282   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T18:26:31,282   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,283     270 |   if(&triple == NULL) return;
2023-09-08T18:26:31,284         |              ^
2023-09-08T18:26:31,284   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2023-09-08T18:26:31,285     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2023-09-08T18:26:31,285         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,287   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,287   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,288     313 |   if (&name == NULL) return;
2023-09-08T18:26:31,288         |             ^
2023-09-08T18:26:31,289   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2023-09-08T18:26:31,290     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2023-09-08T18:26:31,290         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,291   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T18:26:31,292   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,293     344 |   if (&triple == NULL) return;
2023-09-08T18:26:31,293         |               ^
2023-09-08T18:26:31,294   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2023-09-08T18:26:31,295     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2023-09-08T18:26:31,296         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,296   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,297   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,298     374 |   if (&name == NULL) return;
2023-09-08T18:26:31,299         |             ^
2023-09-08T18:26:31,299   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2023-09-08T18:26:31,300     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2023-09-08T18:26:31,301         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,301   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T18:26:31,302   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,303     409 |   if (&triple == NULL) return;
2023-09-08T18:26:31,303         |               ^
2023-09-08T18:26:31,304   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2023-09-08T18:26:31,305     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2023-09-08T18:26:31,306         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,306   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T18:26:31,308   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,308     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T18:26:31,309         |              ^
2023-09-08T18:26:31,309   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2023-09-08T18:26:31,310     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T18:26:31,310         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,311   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,311     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T18:26:31,312         |                                ^
2023-09-08T18:26:31,312   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2023-09-08T18:26:31,313     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T18:26:31,313         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,314   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T18:26:31,315   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,315     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,316         |             ^
2023-09-08T18:26:31,317   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2023-09-08T18:26:31,318     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T18:26:31,318         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,319   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,320     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,321         |                               ^
2023-09-08T18:26:31,321   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2023-09-08T18:26:31,322     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T18:26:31,323         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,324   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T18:26:31,324   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,325     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,325         |               ^
2023-09-08T18:26:31,326   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2023-09-08T18:26:31,327     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T18:26:31,327         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,328   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,329     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,329         |                                 ^
2023-09-08T18:26:31,330   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2023-09-08T18:26:31,331     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T18:26:31,332         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,333   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T18:26:31,333   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,334     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,334         |             ^
2023-09-08T18:26:31,335   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2023-09-08T18:26:31,335     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T18:26:31,336         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,337   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,337     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,338         |                               ^
2023-09-08T18:26:31,338   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2023-09-08T18:26:31,339     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T18:26:31,339         |                                                           ~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,340   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T18:26:31,340   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,341     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,342         |             ^
2023-09-08T18:26:31,342   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2023-09-08T18:26:31,343     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T18:26:31,344         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,345   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,345     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,346         |                               ^
2023-09-08T18:26:31,347   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2023-09-08T18:26:31,348     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T18:26:31,348         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,349   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T18:26:31,350   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,350     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,351         |             ^
2023-09-08T18:26:31,352   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2023-09-08T18:26:31,352     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T18:26:31,353         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,354   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,354     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,355         |                               ^
2023-09-08T18:26:31,355   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2023-09-08T18:26:31,356     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T18:26:31,357         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,357   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T18:26:31,358   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,358     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,359         |               ^
2023-09-08T18:26:31,360   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2023-09-08T18:26:31,360     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T18:26:31,361         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,361   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,362     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,362         |                                 ^
2023-09-08T18:26:31,363   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2023-09-08T18:26:31,364     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T18:26:31,364         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,365   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T18:26:31,365   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:31,366     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,366         |             ^
2023-09-08T18:26:31,367   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2023-09-08T18:26:31,368     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T18:26:31,369         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:31,369   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,370     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,370         |                               ^
2023-09-08T18:26:31,371   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2023-09-08T18:26:31,372     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T18:26:31,372         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,373   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T18:26:31,374   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:31,374     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,375         |               ^
2023-09-08T18:26:31,376   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2023-09-08T18:26:31,376     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2023-09-08T18:26:31,377         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:31,378   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T18:26:31,378     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,379         |                                 ^
2023-09-08T18:26:31,380   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2023-09-08T18:26:31,381     734 |                                  , const unsigned int&  value )
2023-09-08T18:26:31,381         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:31,823   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,824   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,824     236 |   if(&name == NULL) return;
2023-09-08T18:26:31,825         |   ^~
2023-09-08T18:26:31,825   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,826   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,826     313 |   if (&name == NULL) return;
2023-09-08T18:26:31,827         |   ^~
2023-09-08T18:26:31,827   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T18:26:31,828   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,828     374 |   if (&name == NULL) return;
2023-09-08T18:26:31,829         |   ^~
2023-09-08T18:26:31,829   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T18:26:31,830   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,831     270 |   if(&triple == NULL) return;
2023-09-08T18:26:31,831         |   ^~
2023-09-08T18:26:31,832   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T18:26:31,833   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,833     344 |   if (&triple == NULL) return;
2023-09-08T18:26:31,834         |   ^~
2023-09-08T18:26:31,834   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T18:26:31,835   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,836     409 |   if (&triple == NULL) return;
2023-09-08T18:26:31,836         |   ^~
2023-09-08T18:26:31,837   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T18:26:31,838   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,838     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,839         |               ^
2023-09-08T18:26:31,839   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,840     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,841         |                                 ^
2023-09-08T18:26:31,841   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T18:26:31,842   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,843     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,843         |               ^
2023-09-08T18:26:31,844   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,845     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,846         |                                 ^
2023-09-08T18:26:31,846   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T18:26:31,847   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,847     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,848         |               ^
2023-09-08T18:26:31,849   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,849     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T18:26:31,850         |                                 ^
2023-09-08T18:26:31,850   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T18:26:31,851   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,851     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T18:26:31,852         |              ^
2023-09-08T18:26:31,853   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,853     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T18:26:31,854         |                                ^
2023-09-08T18:26:31,855   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T18:26:31,856   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,856     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,857         |             ^
2023-09-08T18:26:31,858   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,858     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,859         |                               ^
2023-09-08T18:26:31,860   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T18:26:31,861   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,862     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,862         |             ^
2023-09-08T18:26:31,863   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,864     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,864         |                               ^
2023-09-08T18:26:31,865   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T18:26:31,866   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,866     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,867         |             ^
2023-09-08T18:26:31,868   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,869     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,869         |                               ^
2023-09-08T18:26:31,870   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T18:26:31,871   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,872     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,873         |             ^
2023-09-08T18:26:31,873   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,874     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,874         |                               ^
2023-09-08T18:26:31,875   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T18:26:31,875   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,876     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,876         |             ^
2023-09-08T18:26:31,877   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,877     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T18:26:31,878         |                               ^
2023-09-08T18:26:31,879   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T18:26:31,879   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:31,880     220 |   if (&stream == NULL)
2023-09-08T18:26:31,880         |   ^~
2023-09-08T18:26:38,514   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T18:26:38,515   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2023-09-08T18:26:38,516     132 |   if (&chars == NULL)
2023-09-08T18:26:38,517         |              ^
2023-09-08T18:26:38,517   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2023-09-08T18:26:38,518     123 | XMLToken::XMLToken (  const std::string&  chars
2023-09-08T18:26:38,519         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T18:26:38,520   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T18:26:38,521   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:26:38,522     156 |   if (&orig == NULL)
2023-09-08T18:26:38,522         |             ^
2023-09-08T18:26:38,523   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2023-09-08T18:26:38,524     154 | XMLToken::XMLToken(const XMLToken& orig)
2023-09-08T18:26:38,524         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:38,527   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T18:26:38,528   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:26:38,528     195 |   if (&rhs == NULL)
2023-09-08T18:26:38,529         |            ^
2023-09-08T18:26:38,530   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2023-09-08T18:26:38,530     193 | XMLToken::operator=(const XMLToken& rhs)
2023-09-08T18:26:38,531         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:38,534   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T18:26:38,535   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T18:26:38,536     312 |         if(&attributes == NULL)
2023-09-08T18:26:38,536         |                        ^
2023-09-08T18:26:38,537   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2023-09-08T18:26:38,538     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2023-09-08T18:26:38,538         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:26:38,544   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T18:26:38,544   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2023-09-08T18:26:38,545     783 |         if(&namespaces == NULL)
2023-09-08T18:26:38,545         |                        ^
2023-09-08T18:26:38,546   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2023-09-08T18:26:38,547     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2023-09-08T18:26:38,547         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T18:26:38,548   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T18:26:38,548   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:26:38,549     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:38,549         |            ^
2023-09-08T18:26:38,550   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2023-09-08T18:26:38,550     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T18:26:38,551         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:38,551   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:38,552     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:38,553         |                               ^
2023-09-08T18:26:38,553   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2023-09-08T18:26:38,554     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T18:26:38,555         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:38,558   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T18:26:38,558   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T18:26:38,559    1058 |         if(&triple == NULL)
2023-09-08T18:26:38,560         |                    ^
2023-09-08T18:26:38,561   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2023-09-08T18:26:38,561    1055 | XMLToken::setTriple(const XMLTriple& triple)
2023-09-08T18:26:38,562         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:38,843   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T18:26:38,844   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,845     312 |         if(&attributes == NULL)
2023-09-08T18:26:38,845         |         ^~
2023-09-08T18:26:38,847   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T18:26:38,848   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,848     783 |         if(&namespaces == NULL)
2023-09-08T18:26:38,849         |         ^~
2023-09-08T18:26:38,850   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T18:26:38,850   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,851     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:38,852         |            ^
2023-09-08T18:26:38,853   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,853     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T18:26:38,853         |                               ^
2023-09-08T18:26:38,854   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T18:26:38,854   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,855    1058 |         if(&triple == NULL)
2023-09-08T18:26:38,855         |         ^~
2023-09-08T18:26:38,873   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T18:26:38,873   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,874     132 |   if (&chars == NULL)
2023-09-08T18:26:38,874         |   ^~
2023-09-08T18:26:38,876   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T18:26:38,876   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,877     156 |   if (&orig == NULL)
2023-09-08T18:26:38,877         |   ^~
2023-09-08T18:26:38,878   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T18:26:38,879   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:38,880     195 |   if (&rhs == NULL)
2023-09-08T18:26:38,881         |   ^~
2023-09-08T18:26:43,184   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T18:26:43,185   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:26:43,185     188 |   if (&element == NULL) return;
2023-09-08T18:26:43,186         |                ^
2023-09-08T18:26:43,186   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2023-09-08T18:26:43,187     186 | XMLTokenizer::startElement (const XMLToken& element)
2023-09-08T18:26:43,188         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:43,188   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T18:26:43,189   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T18:26:43,190     234 |   else if (&element != NULL)
2023-09-08T18:26:43,191         |                     ^
2023-09-08T18:26:43,191   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2023-09-08T18:26:43,192     220 | XMLTokenizer::endElement (const XMLToken& element)
2023-09-08T18:26:43,193         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:43,193   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T18:26:43,194   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2023-09-08T18:26:43,195     247 |   if (&data == NULL) return;
2023-09-08T18:26:43,195         |             ^
2023-09-08T18:26:43,196   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2023-09-08T18:26:43,197     245 | XMLTokenizer::characters (const XMLToken& data)
2023-09-08T18:26:43,197         |                           ~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:43,529   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T18:26:43,530   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:43,531     188 |   if (&element == NULL) return;
2023-09-08T18:26:43,531         |   ^~
2023-09-08T18:26:43,531   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T18:26:43,532   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:43,532     234 |   else if (&element != NULL)
2023-09-08T18:26:43,533         |        ^~
2023-09-08T18:26:43,533   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T18:26:43,534   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:43,534     247 |   if (&data == NULL) return;
2023-09-08T18:26:43,535         |   ^~
2023-09-08T18:26:46,510   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:26:46,510   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T18:26:46,511      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T18:26:46,512         |              ^
2023-09-08T18:26:46,512   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2023-09-08T18:26:46,513      58 | XMLTriple::XMLTriple (  const std::string&  name
2023-09-08T18:26:46,513         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:46,514   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T18:26:46,515      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T18:26:46,515         |                                ^
2023-09-08T18:26:46,516   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2023-09-08T18:26:46,517      59 |                       , const std::string&  uri
2023-09-08T18:26:46,518         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:46,518   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T18:26:46,519      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T18:26:46,520         |                                                     ^
2023-09-08T18:26:46,521   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2023-09-08T18:26:46,521      60 |                       , const std::string&  prefix )
2023-09-08T18:26:46,522         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T18:26:46,523   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T18:26:46,523   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2023-09-08T18:26:46,524      81 |   if (&triplet == NULL)
2023-09-08T18:26:46,525         |                ^
2023-09-08T18:26:46,526   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2023-09-08T18:26:46,526      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2023-09-08T18:26:46,527         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T18:26:46,528   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T18:26:46,528   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T18:26:46,529     117 |   if (&orig == NULL)
2023-09-08T18:26:46,530         |             ^
2023-09-08T18:26:46,531   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2023-09-08T18:26:46,532     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2023-09-08T18:26:46,532         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T18:26:46,533   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T18:26:46,533   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T18:26:46,534     136 |   if (&rhs == NULL)
2023-09-08T18:26:46,534         |            ^
2023-09-08T18:26:46,535   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2023-09-08T18:26:46,535     134 | XMLTriple::operator=(const XMLTriple& rhs)
2023-09-08T18:26:46,536         |                      ~~~~~~~~~~~~~~~~~^~~
2023-09-08T18:26:46,720   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T18:26:46,721   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:46,722      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T18:26:46,722         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T18:26:46,723   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T18:26:46,723   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:46,724     117 |   if (&orig == NULL)
2023-09-08T18:26:46,725         |   ^~
2023-09-08T18:26:46,725   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T18:26:46,726   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:46,726     136 |   if (&rhs == NULL)
2023-09-08T18:26:46,727         |   ^~
2023-09-08T18:26:46,728   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T18:26:46,728   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2023-09-08T18:26:46,729      81 |   if (&triplet == NULL)
2023-09-08T18:26:46,730         |   ^~
2023-09-08T18:26:55,547   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-08T18:26:55,547   !!

2023-09-08T18:26:55,548           ********************************************************************************
2023-09-08T18:26:55,549           Please avoid running ``setup.py`` directly.
2023-09-08T18:26:55,549           Instead, use pypa/build, pypa/installer or other
2023-09-08T18:26:55,550           standards-based tools.

2023-09-08T18:26:55,551           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-08T18:26:55,551           ********************************************************************************

2023-09-08T18:26:55,552   !!
2023-09-08T18:26:55,553     self.initialize_options()
2023-09-08T18:27:14,728   Building wheel for python-libsbml (setup.py): finished with status 'done'
2023-09-08T18:27:15,144   Created wheel for python-libsbml: filename=python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl size=32367705 sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a
2023-09-08T18:27:15,145   Stored in directory: /tmp/pip-ephem-wheel-cache-todkjyd9/wheels/cf/49/a9/69c9517cedc5661d78f1773641b43fc3fa37726f8b432584c2
2023-09-08T18:27:15,164 Successfully built python-libsbml
2023-09-08T18:27:16,021 Removed build tracker: '/tmp/pip-build-tracker-3v2dhe3z'