2023-09-08T18:27:45,943 Created temporary directory: /tmp/pip-build-tracker-sgdjg2hm
2023-09-08T18:27:45,944 Initialized build tracking at /tmp/pip-build-tracker-sgdjg2hm
2023-09-08T18:27:45,945 Created build tracker: /tmp/pip-build-tracker-sgdjg2hm
2023-09-08T18:27:45,945 Entered build tracker: /tmp/pip-build-tracker-sgdjg2hm
2023-09-08T18:27:45,946 Created temporary directory: /tmp/pip-wheel-imqvj8ud
2023-09-08T18:27:45,949 Created temporary directory: /tmp/pip-ephem-wheel-cache-fpy3pt9f
2023-09-08T18:27:45,970 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T18:27:45,974 2 location(s) to search for versions of scikit-bio:
2023-09-08T18:27:45,974 * https://pypi.org/simple/scikit-bio/
2023-09-08T18:27:45,974 * https://www.piwheels.org/simple/scikit-bio/
2023-09-08T18:27:45,975 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/
2023-09-08T18:27:45,976 Getting page https://pypi.org/simple/scikit-bio/
2023-09-08T18:27:45,977 Found index url https://pypi.org/simple/
2023-09-08T18:27:46,200 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json
2023-09-08T18:27:46,205   Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0
2023-09-08T18:27:46,206   Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1
2023-09-08T18:27:46,206   Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2
2023-09-08T18:27:46,207   Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3
2023-09-08T18:27:46,208   Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4
2023-09-08T18:27:46,208   Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5
2023-09-08T18:27:46,209   Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0
2023-09-08T18:27:46,210   Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1
2023-09-08T18:27:46,211   Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2
2023-09-08T18:27:46,211   Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3
2023-09-08T18:27:46,212   Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0
2023-09-08T18:27:46,213   Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1
2023-09-08T18:27:46,213   Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2
2023-09-08T18:27:46,214   Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0
2023-09-08T18:27:46,215   Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1
2023-09-08T18:27:46,216   Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2
2023-09-08T18:27:46,216   Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3
2023-09-08T18:27:46,217   Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4
2023-09-08T18:27:46,217   Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5
2023-09-08T18:27:46,218   Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6
2023-09-08T18:27:46,218   Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7
2023-09-08T18:27:46,219   Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8
2023-09-08T18:27:46,219   Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9
2023-09-08T18:27:46,220 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/
2023-09-08T18:27:46,221 Getting page https://www.piwheels.org/simple/scikit-bio/
2023-09-08T18:27:46,222 Found index url https://www.piwheels.org/simple/
2023-09-08T18:27:46,503 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html
2023-09-08T18:27:46,508   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,508   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,509   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,509   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,510   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,510   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,511   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,512   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,512   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,513   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,513   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,514   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,514   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,515   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T18:27:46,515 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/
2023-09-08T18:27:46,516 Skipping link: not a file: https://pypi.org/simple/scikit-bio/
2023-09-08T18:27:46,537 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates
2023-09-08T18:27:46,555 Collecting scikit-bio==0.4.0
2023-09-08T18:27:46,557   Created temporary directory: /tmp/pip-unpack-whmm5vpe
2023-09-08T18:27:47,481   Downloading scikit-bio-0.4.0.tar.gz (8.0 MB)
2023-09-08T18:27:50,995   Added scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-sgdjg2hm'
2023-09-08T18:27:50,997   Running setup.py (path:/tmp/pip-wheel-imqvj8ud/scikit-bio_dbbb9dd74b5c4100bd417b78831e4289/setup.py) egg_info for package scikit-bio
2023-09-08T18:27:50,998   Created temporary directory: /tmp/pip-pip-egg-info-1jarh84l
2023-09-08T18:27:50,999   Preparing metadata (setup.py): started
2023-09-08T18:27:51,000   Running command python setup.py egg_info
2023-09-08T18:27:51,856   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-08T18:27:51,857   !!

2023-09-08T18:27:51,858           ********************************************************************************
2023-09-08T18:27:51,858           Requirements should be satisfied by a PEP 517 installer.
2023-09-08T18:27:51,859           If you are using pip, you can try `pip install --use-pep517`.
2023-09-08T18:27:51,860           ********************************************************************************

2023-09-08T18:27:51,861   !!
2023-09-08T18:27:51,862     dist.fetch_build_eggs(dist.setup_requires)
2023-09-08T18:27:52,042   running egg_info
2023-09-08T18:27:52,043   creating /tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info
2023-09-08T18:27:52,067   writing /tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info/PKG-INFO
2023-09-08T18:27:52,073   writing dependency_links to /tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info/dependency_links.txt
2023-09-08T18:27:52,076   writing requirements to /tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info/requires.txt
2023-09-08T18:27:52,077   writing top-level names to /tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info/top_level.txt
2023-09-08T18:27:52,079   writing manifest file '/tmp/pip-pip-egg-info-1jarh84l/scikit_bio.egg-info/SOURCES.txt'
2023-09-08T18:27:52,194   Traceback (most recent call last):
2023-09-08T18:27:52,195     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-08T18:27:52,195       from . import multiarray
2023-09-08T18:27:52,196     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-08T18:27:52,196       from . import overrides
2023-09-08T18:27:52,197     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-08T18:27:52,197       from numpy.core._multiarray_umath import (
2023-09-08T18:27:52,198   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T18:27:52,199   During handling of the above exception, another exception occurred:

2023-09-08T18:27:52,200   Traceback (most recent call last):
2023-09-08T18:27:52,201     File "<string>", line 2, in <module>
2023-09-08T18:27:52,201     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T18:27:52,202     File "/tmp/pip-wheel-imqvj8ud/scikit-bio_dbbb9dd74b5c4100bd417b78831e4289/setup.py", line 93, in <module>
2023-09-08T18:27:52,202       setup(name='scikit-bio',
2023-09-08T18:27:52,203     File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup
2023-09-08T18:27:52,204       return distutils.core.setup(**attrs)
2023-09-08T18:27:52,204              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,205     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup
2023-09-08T18:27:52,205       return run_commands(dist)
2023-09-08T18:27:52,206              ^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,206     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-09-08T18:27:52,207       dist.run_commands()
2023-09-08T18:27:52,208     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-09-08T18:27:52,208       self.run_command(cmd)
2023-09-08T18:27:52,209     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-08T18:27:52,209       super().run_command(command)
2023-09-08T18:27:52,210     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-08T18:27:52,210       cmd_obj.run()
2023-09-08T18:27:52,211     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 318, in run
2023-09-08T18:27:52,212       self.find_sources()
2023-09-08T18:27:52,213     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 326, in find_sources
2023-09-08T18:27:52,214       mm.run()
2023-09-08T18:27:52,215     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 548, in run
2023-09-08T18:27:52,216       self.add_defaults()
2023-09-08T18:27:52,217     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 586, in add_defaults
2023-09-08T18:27:52,217       sdist.add_defaults(self)
2023-09-08T18:27:52,219     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/sdist.py", line 113, in add_defaults
2023-09-08T18:27:52,219       super().add_defaults()
2023-09-08T18:27:52,220     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
2023-09-08T18:27:52,221       self._add_defaults_ext()
2023-09-08T18:27:52,221     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
2023-09-08T18:27:52,222       build_ext = self.get_finalized_command('build_ext')
2023-09-08T18:27:52,223                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,223     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
2023-09-08T18:27:52,224       cmd_obj.ensure_finalized()
2023-09-08T18:27:52,225     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
2023-09-08T18:27:52,226       self.finalize_options()
2023-09-08T18:27:52,226     File "/tmp/pip-wheel-imqvj8ud/scikit-bio_dbbb9dd74b5c4100bd417b78831e4289/setup.py", line 28, in finalize_options
2023-09-08T18:27:52,227       import numpy
2023-09-08T18:27:52,228     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-08T18:27:52,228       from . import core
2023-09-08T18:27:52,229     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-08T18:27:52,230       raise ImportError(msg)
2023-09-08T18:27:52,230   ImportError:

2023-09-08T18:27:52,232   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-08T18:27:52,233   Importing the numpy C-extensions failed. This error can happen for
2023-09-08T18:27:52,234   many reasons, often due to issues with your setup or how NumPy was
2023-09-08T18:27:52,235   installed.

2023-09-08T18:27:52,236   We have compiled some common reasons and troubleshooting tips at:

2023-09-08T18:27:52,238       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-08T18:27:52,240   Please note and check the following:

2023-09-08T18:27:52,242     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-08T18:27:52,243     * The NumPy version is: "1.25.2"

2023-09-08T18:27:52,245   and make sure that they are the versions you expect.
2023-09-08T18:27:52,246   Please carefully study the documentation linked above for further help.

2023-09-08T18:27:52,247   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T18:27:52,331   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T18:27:52,343   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T18:27:52,343   exec(compile('"'"''"'"''"'"'
2023-09-08T18:27:52,343   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T18:27:52,343   #
2023-09-08T18:27:52,343   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T18:27:52,343   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T18:27:52,343   # - It provides a clear error message when setuptools is not installed.
2023-09-08T18:27:52,343   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T18:27:52,343   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T18:27:52,343   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T18:27:52,343   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T18:27:52,343   import os, sys, tokenize
2023-09-08T18:27:52,343   
2023-09-08T18:27:52,343   try:
2023-09-08T18:27:52,343       import setuptools
2023-09-08T18:27:52,343   except ImportError as error:
2023-09-08T18:27:52,343       print(
2023-09-08T18:27:52,343           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T18:27:52,343           "the build environment.",
2023-09-08T18:27:52,343           file=sys.stderr,
2023-09-08T18:27:52,343       )
2023-09-08T18:27:52,343       sys.exit(1)
2023-09-08T18:27:52,343   
2023-09-08T18:27:52,343   __file__ = %r
2023-09-08T18:27:52,343   sys.argv[0] = __file__
2023-09-08T18:27:52,343   
2023-09-08T18:27:52,343   if os.path.exists(__file__):
2023-09-08T18:27:52,343       filename = __file__
2023-09-08T18:27:52,343       with tokenize.open(__file__) as f:
2023-09-08T18:27:52,343           setup_py_code = f.read()
2023-09-08T18:27:52,343   else:
2023-09-08T18:27:52,343       filename = "<auto-generated setuptools caller>"
2023-09-08T18:27:52,343       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T18:27:52,343   
2023-09-08T18:27:52,343   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T18:27:52,343   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-imqvj8ud/scikit-bio_dbbb9dd74b5c4100bd417b78831e4289/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-1jarh84l[/]
2023-09-08T18:27:52,344   [bold magenta]cwd[/]: /tmp/pip-wheel-imqvj8ud/scikit-bio_dbbb9dd74b5c4100bd417b78831e4289/
2023-09-08T18:27:52,345   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T18:27:52,346 ERROR: [present-rich] metadata generation failed
2023-09-08T18:27:52,352 Exception information:
2023-09-08T18:27:52,352 Traceback (most recent call last):
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T18:27:52,352     call_subprocess(
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T18:27:52,352     raise error
2023-09-08T18:27:52,352 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T18:27:52,352 
2023-09-08T18:27:52,352 The above exception was the direct cause of the following exception:
2023-09-08T18:27:52,352 
2023-09-08T18:27:52,352 Traceback (most recent call last):
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T18:27:52,352     status = run_func(*args)
2023-09-08T18:27:52,352              ^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T18:27:52,352     return func(self, options, args)
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T18:27:52,352     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T18:27:52,352                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T18:27:52,352     result = self._result = resolver.resolve(
2023-09-08T18:27:52,352                             ^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T18:27:52,352     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T18:27:52,352             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T18:27:52,352     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T18:27:52,352     if not criterion.candidates:
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T18:27:52,352     return bool(self._sequence)
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T18:27:52,352     return any(self)
2023-09-08T18:27:52,352            ^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T18:27:52,352     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T18:27:52,352     candidate = func()
2023-09-08T18:27:52,352                 ^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T18:27:52,352     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T18:27:52,352                                        ^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T18:27:52,352     super().__init__(
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T18:27:52,352     self.dist = self._prepare()
2023-09-08T18:27:52,352                 ^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T18:27:52,352     dist = self._prepare_distribution()
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T18:27:52,352     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T18:27:52,352     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T18:27:52,352     dist = _get_prepared_distribution(
2023-09-08T18:27:52,352            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T18:27:52,352     abstract_dist.prepare_distribution_metadata(
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T18:27:52,352     self.req.prepare_metadata()
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T18:27:52,352     self.metadata_directory = generate_metadata_legacy(
2023-09-08T18:27:52,352                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T18:27:52,352   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T18:27:52,352     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T18:27:52,352 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T18:27:52,364 Removed scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-sgdjg2hm'
2023-09-08T18:27:52,364 Removed build tracker: '/tmp/pip-build-tracker-sgdjg2hm'