2023-09-08T18:46:17,711 Created temporary directory: /tmp/pip-build-tracker-f51vn1u1 2023-09-08T18:46:17,712 Initialized build tracking at /tmp/pip-build-tracker-f51vn1u1 2023-09-08T18:46:17,713 Created build tracker: /tmp/pip-build-tracker-f51vn1u1 2023-09-08T18:46:17,713 Entered build tracker: /tmp/pip-build-tracker-f51vn1u1 2023-09-08T18:46:17,714 Created temporary directory: /tmp/pip-wheel-ic_8h75j 2023-09-08T18:46:17,717 Created temporary directory: /tmp/pip-ephem-wheel-cache-t7_mnnka 2023-09-08T18:46:17,739 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T18:46:17,743 2 location(s) to search for versions of pybedtools: 2023-09-08T18:46:17,743 * https://pypi.org/simple/pybedtools/ 2023-09-08T18:46:17,743 * https://www.piwheels.org/simple/pybedtools/ 2023-09-08T18:46:17,743 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2023-09-08T18:46:17,744 Getting page https://pypi.org/simple/pybedtools/ 2023-09-08T18:46:17,746 Found index url https://pypi.org/simple/ 2023-09-08T18:46:17,961 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2023-09-08T18:46:17,967 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2023-09-08T18:46:17,968 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2023-09-08T18:46:17,969 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2023-09-08T18:46:17,970 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2023-09-08T18:46:17,970 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2023-09-08T18:46:17,971 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2023-09-08T18:46:17,972 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2023-09-08T18:46:17,972 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2023-09-08T18:46:17,973 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2023-09-08T18:46:17,974 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2023-09-08T18:46:17,974 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2023-09-08T18:46:17,975 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2023-09-08T18:46:17,975 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2023-09-08T18:46:17,976 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2023-09-08T18:46:17,977 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2023-09-08T18:46:17,978 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2023-09-08T18:46:17,978 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2023-09-08T18:46:17,979 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2023-09-08T18:46:17,980 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2023-09-08T18:46:17,980 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2023-09-08T18:46:17,981 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2023-09-08T18:46:17,981 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2023-09-08T18:46:17,982 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2023-09-08T18:46:17,982 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2023-09-08T18:46:17,983 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2023-09-08T18:46:17,984 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2023-09-08T18:46:17,984 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2023-09-08T18:46:17,985 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2023-09-08T18:46:17,985 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2023-09-08T18:46:17,986 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2023-09-08T18:46:17,987 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2023-09-08T18:46:17,987 Getting page https://www.piwheels.org/simple/pybedtools/ 2023-09-08T18:46:17,989 Found index url https://www.piwheels.org/simple/ 2023-09-08T18:46:18,470 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2023-09-08T18:46:18,488 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,488 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,489 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,489 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,490 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,490 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,491 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,491 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=79bc0a90018bbfd60276901e072ab165804d2ff5f8ad60fc24cd87fd4796ed32 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,492 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,493 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=eb4cf0816506d2cb8baec62d12acfce4105a47818e36316fc202cea4a1bebcff (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,493 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,494 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=07a180e8ec94b79db1ecf18795ded10f9fafcb7586dd2ac3fc183059d9e20192 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,495 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,495 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=fe412d87eeebb9a05dbdae0f5730b7722874602038420cc1802a5f7bfd21aaa9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,496 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,497 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=282cbbf8e41d74ce886483a369858d3a07dd0de1e195b0342f6b9a7312e3b43d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,497 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,497 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=3e7766b5993aa9ac36aceacfa1e80ef13e5d9fb9a3820c15f4c1680393929f1d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,498 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,498 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=8c33ac79af076bf58483627cf7d7e4bb5d76b3214a695335c9e21156cdb13885 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,499 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,499 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ea1a8e0e4aa20ad4cc2567ce39857ab0d8a90edb67031434d956ac52360f441f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,500 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,501 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=0ee5a5a105c113f529af8fd039abbf4775b35d007315becdd315645369270e6d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,501 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,502 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=ee1a206c84220ca1b4d10294ea3f59da5c4d7f7c0538ec4af577c690512abe2b (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,502 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv7l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,503 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp35-cp35m-linux_armv6l.whl#sha256=ca8ca8831458cc02917e93095ee6b3b80499f3d59ec1288a02b7f12a0b77f337 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,503 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,504 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=1763a047ae734a7fae71bd79eb1d176a88b3913c3697cfdfcae92957b28852fc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,505 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv6l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,505 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp34-cp34m-linux_armv7l.whl#sha256=87e83e73a28fed346080668f2a477fb08a6ca8bf3802640775026de54323b23c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,505 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv6l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,506 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.10-cp35-cp35m-linux_armv7l.whl#sha256=2aa333ce8f980896690a87a06480996253427b69909920d39f0e36cfcc80f63c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,506 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv7l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,507 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp35-cp35m-linux_armv6l.whl#sha256=a9d5b8d91e54f6a17c043f9b94f8fbf1671ef2895d07adb0154774d0428c9ab7 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,508 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv6l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,508 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.9-cp34-cp34m-linux_armv7l.whl#sha256=3575f3ae35b6f3ac0a2361eeae3e7503b6fd3f93a38a4b49a514c5f26950970a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,508 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv6l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,509 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp35-cp35m-linux_armv7l.whl#sha256=8ae0bc12b1cd71f9d8866c5ee397347c3d4bb8eaf9c96d603cab7b9aedc54157 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,509 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,510 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=94c5dc7c26654dc605f452c971f5dc9dee38169c1c5bbb16e62144e7c6161c1e (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,511 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,511 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=e6f833d45535fe8386fe0fda09bca022a7da6f04721964403d287539df5d92ce (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,512 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv6l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,512 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv7l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,512 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,513 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,513 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv6l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,514 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv7l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,514 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv6l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,515 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp35-cp35m-linux_armv7l.whl#sha256=980037bc7c774a4c03315f85c5a22209dc79103113d282b9dd4998a596430afa (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,515 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv6l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,516 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv7l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,516 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv7l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,517 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv6l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,517 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv6l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,518 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp34-cp34m-linux_armv7l.whl#sha256=0c918e20eb5fd94e0d90ca921bd2c023be4c2cdd9b8f4320a09ca791931cc2f9 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,518 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv6l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,519 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp34-cp34m-linux_armv7l.whl#sha256=0e95d8fa061476ac4d6f466d79e75d81a3da01e7f6747fc6725c1275b6201d9d (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,519 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv7l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,520 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.1-cp35-cp35m-linux_armv6l.whl#sha256=da9cb927034371755a7f7294f2498d49b63a6549d77a30f3b5dc91db13be8352 (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,520 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv6l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,520 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv7l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,521 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,521 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv6l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,522 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-08T18:46:18,522 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2023-09-08T18:46:18,523 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2023-09-08T18:46:18,546 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2023-09-08T18:46:18,565 Collecting pybedtools==0.7.0 2023-09-08T18:46:18,568 Created temporary directory: /tmp/pip-unpack-bx0dwfhp 2023-09-08T18:46:18,970 Downloading pybedtools-0.7.0.tar.gz (12.6 MB) 2023-09-08T18:46:23,072 Added pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-f51vn1u1' 2023-09-08T18:46:23,075 Running setup.py (path:/tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/setup.py) egg_info for package pybedtools 2023-09-08T18:46:23,076 Created temporary directory: /tmp/pip-pip-egg-info-ioqfd5m0 2023-09-08T18:46:23,076 Preparing metadata (setup.py): started 2023-09-08T18:46:23,078 Running command python setup.py egg_info 2023-09-08T18:46:23,578 /tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-08T18:46:23,578 import pkg_resources 2023-09-08T18:46:24,195 running egg_info 2023-09-08T18:46:24,197 creating /tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info 2023-09-08T18:46:24,226 writing /tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/PKG-INFO 2023-09-08T18:46:24,233 writing dependency_links to /tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/dependency_links.txt 2023-09-08T18:46:24,236 writing requirements to /tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/requires.txt 2023-09-08T18:46:24,238 writing top-level names to /tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/top_level.txt 2023-09-08T18:46:24,241 writing manifest file '/tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/SOURCES.txt' 2023-09-08T18:46:24,337 reading manifest file '/tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/SOURCES.txt' 2023-09-08T18:46:24,339 reading manifest template 'MANIFEST.in' 2023-09-08T18:46:24,558 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-09-08T18:46:24,559 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-09-08T18:46:24,560 adding license file 'LICENSE.txt' 2023-09-08T18:46:24,571 writing manifest file '/tmp/pip-pip-egg-info-ioqfd5m0/pybedtools.egg-info/SOURCES.txt' 2023-09-08T18:46:24,681 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T18:46:24,685 Source in /tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1 has version 0.7.0, which satisfies requirement pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz 2023-09-08T18:46:24,686 Removed pybedtools==0.7.0 from https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-f51vn1u1' 2023-09-08T18:46:24,691 Created temporary directory: /tmp/pip-unpack-e17v1d_j 2023-09-08T18:46:24,692 Created temporary directory: /tmp/pip-unpack-m8_9eycj 2023-09-08T18:46:24,697 Building wheels for collected packages: pybedtools 2023-09-08T18:46:24,701 Created temporary directory: /tmp/pip-wheel-shzn82b0 2023-09-08T18:46:24,702 Building wheel for pybedtools (setup.py): started 2023-09-08T18:46:24,703 Destination directory: /tmp/pip-wheel-shzn82b0 2023-09-08T18:46:24,704 Running command python setup.py bdist_wheel 2023-09-08T18:46:25,195 /tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-08T18:46:25,195 import pkg_resources 2023-09-08T18:46:25,804 running bdist_wheel 2023-09-08T18:46:25,827 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-08T18:46:25,851 running build 2023-09-08T18:46:25,852 running build_py 2023-09-08T18:46:25,878 creating build 2023-09-08T18:46:25,879 creating build/lib.linux-armv7l-cpython-311 2023-09-08T18:46:25,879 creating build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,881 copying pybedtools/__main__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,882 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,884 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,886 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,888 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,890 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,892 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,894 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,897 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,899 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,901 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:25,904 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,904 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,906 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,908 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,910 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,911 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,913 copying pybedtools/test/test1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,916 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,918 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,919 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,922 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,924 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-08T18:46:25,926 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,927 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,928 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,931 copying pybedtools/contrib/classifier.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,933 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,935 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,937 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,939 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-08T18:46:25,941 creating build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,942 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,944 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,946 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,948 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,950 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,952 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,954 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,955 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-08T18:46:25,958 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,959 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,969 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,970 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,972 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,976 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,977 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,979 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,984 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,987 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,989 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:25,991 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,030 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,032 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,034 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,036 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,039 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,041 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,043 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,263 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,266 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,268 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,277 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,279 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,286 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,290 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,291 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,293 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,415 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,417 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,425 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,470 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,472 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,474 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,477 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,479 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,482 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,485 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,487 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,489 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,491 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,494 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,496 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,498 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,501 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,503 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,505 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,508 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,510 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,514 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,517 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,519 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-08T18:46:26,524 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,526 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,529 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,533 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,535 copying pybedtools/cbedtools.cxx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,555 copying pybedtools/featurefuncs.cxx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,563 copying pybedtools/_Window.c -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,571 running build_ext 2023-09-08T18:46:26,579 building 'pybedtools.cbedtools' extension 2023-09-08T18:46:26,580 creating build/temp.linux-armv7l-cpython-311 2023-09-08T18:46:26,580 creating build/temp.linux-armv7l-cpython-311/pybedtools 2023-09-08T18:46:26,581 creating build/temp.linux-armv7l-cpython-311/src 2023-09-08T18:46:26,582 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cxx -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2023-09-08T18:46:29,043 In file included from pybedtools/cbedtools.cxx:256: 2023-09-08T18:46:29,044 src/bedFile.h: In function ‘BIN getBin(CHRPOS, CHRPOS)’: 2023-09-08T18:46:29,045 src/bedFile.h:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 2023-09-08T18:46:29,046 92 | for (register short i = 0; i < _binLevels; ++i) { 2023-09-08T18:46:29,046 | ^ 2023-09-08T18:46:29,117 In file included from /usr/include/python3.11/Python.h:44, 2023-09-08T18:46:29,117 from pybedtools/cbedtools.cxx:16: 2023-09-08T18:46:29,118 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ListComp_Append(PyObject*, PyObject*)’: 2023-09-08T18:46:29,118 /usr/include/python3.11/object.h:145:30: error: lvalue required as left operand of assignment 2023-09-08T18:46:29,119 145 | # define Py_SIZE(ob) Py_SIZE(_PyObject_CAST(ob)) 2023-09-08T18:46:29,119 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,120 pybedtools/cbedtools.cxx:669:9: note: in expansion of macro ‘Py_SIZE’ 2023-09-08T18:46:29,120 669 | Py_SIZE(list) = len+1; 2023-09-08T18:46:29,121 | ^~~~~~~ 2023-09-08T18:46:29,121 pybedtools/cbedtools.cxx: In function ‘int __Pyx_PyList_Append(PyObject*, PyObject*)’: 2023-09-08T18:46:29,122 /usr/include/python3.11/object.h:145:30: error: lvalue required as left operand of assignment 2023-09-08T18:46:29,122 145 | # define Py_SIZE(ob) Py_SIZE(_PyObject_CAST(ob)) 2023-09-08T18:46:29,123 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,124 pybedtools/cbedtools.cxx:700:9: note: in expansion of macro ‘Py_SIZE’ 2023-09-08T18:46:29,124 700 | Py_SIZE(list) = len+1; 2023-09-08T18:46:29,125 | ^~~~~~~ 2023-09-08T18:46:29,728 pybedtools/cbedtools.cxx: In function ‘void __pyx_tp_dealloc_10pybedtools_9cbedtools_Interval(PyObject*)’: 2023-09-08T18:46:29,729 /usr/include/python3.11/object.h:127:34: error: lvalue required as increment operand 2023-09-08T18:46:29,729 127 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2023-09-08T18:46:29,730 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,731 pybedtools/cbedtools.cxx:12876:7: note: in expansion of macro ‘Py_REFCNT’ 2023-09-08T18:46:29,732 12876 | ++Py_REFCNT(o); 2023-09-08T18:46:29,733 | ^~~~~~~~~ 2023-09-08T18:46:29,733 /usr/include/python3.11/object.h:127:34: error: lvalue required as decrement operand 2023-09-08T18:46:29,734 127 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2023-09-08T18:46:29,735 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,736 pybedtools/cbedtools.cxx:12878:7: note: in expansion of macro ‘Py_REFCNT’ 2023-09-08T18:46:29,736 12878 | --Py_REFCNT(o); 2023-09-08T18:46:29,737 | ^~~~~~~~~ 2023-09-08T18:46:29,749 pybedtools/cbedtools.cxx: In function ‘void __pyx_tp_dealloc_10pybedtools_9cbedtools_IntervalFile(PyObject*)’: 2023-09-08T18:46:29,750 /usr/include/python3.11/object.h:127:34: error: lvalue required as increment operand 2023-09-08T18:46:29,750 127 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2023-09-08T18:46:29,751 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,752 pybedtools/cbedtools.cxx:13349:7: note: in expansion of macro ‘Py_REFCNT’ 2023-09-08T18:46:29,752 13349 | ++Py_REFCNT(o); 2023-09-08T18:46:29,753 | ^~~~~~~~~ 2023-09-08T18:46:29,754 /usr/include/python3.11/object.h:127:34: error: lvalue required as decrement operand 2023-09-08T18:46:29,754 127 | # define Py_REFCNT(ob) Py_REFCNT(_PyObject_CAST(ob)) 2023-09-08T18:46:29,755 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,755 pybedtools/cbedtools.cxx:13351:7: note: in expansion of macro ‘Py_REFCNT’ 2023-09-08T18:46:29,756 13351 | --Py_REFCNT(o); 2023-09-08T18:46:29,757 | ^~~~~~~~~ 2023-09-08T18:46:29,774 pybedtools/cbedtools.cxx: In function ‘int __Pyx_InitCachedConstants()’: 2023-09-08T18:46:29,775 pybedtools/cbedtools.cxx:13705:237: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T18:46:29,776 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,777 | ^~~ 2023-09-08T18:46:29,777 | | 2023-09-08T18:46:29,778 | int 2023-09-08T18:46:29,778 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,778 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,779 | ^~~~~ 2023-09-08T18:46:29,779 pybedtools/cbedtools.cxx:13705:242: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2023-09-08T18:46:29,780 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,781 | ^~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,781 | | 2023-09-08T18:46:29,782 | PyObject* {aka _object*} 2023-09-08T18:46:29,783 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,783 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,784 | ^~~~ 2023-09-08T18:46:29,785 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2023-09-08T18:46:29,785 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,786 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,786 pybedtools/cbedtools.cxx:13705:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,787 13705 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_cmp, 280, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 280; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,788 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,789 In file included from /usr/include/python3.11/Python.h:71: 2023-09-08T18:46:29,789 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T18:46:29,790 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T18:46:29,790 | ^~~~~~~~~~ 2023-09-08T18:46:29,798 pybedtools/cbedtools.cxx:14106:238: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T18:46:29,799 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,799 | ^~~ 2023-09-08T18:46:29,800 | | 2023-09-08T18:46:29,800 | int 2023-09-08T18:46:29,801 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,801 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,802 | ^~~~~ 2023-09-08T18:46:29,803 pybedtools/cbedtools.cxx:14106:243: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2023-09-08T18:46:29,804 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,804 | ^~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,805 | | 2023-09-08T18:46:29,805 | PyObject* {aka _object*} 2023-09-08T18:46:29,806 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,807 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,808 | ^~~~ 2023-09-08T18:46:29,808 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2023-09-08T18:46:29,808 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,809 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,809 pybedtools/cbedtools.cxx:14106:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,810 14106 | __pyx_codeobj__70 = (PyObject*)__Pyx_PyCode_New(2, 0, 9, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__69, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_init, 145, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__70)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 145; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,810 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,811 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T18:46:29,811 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T18:46:29,812 | ^~~~~~~~~~ 2023-09-08T18:46:29,812 pybedtools/cbedtools.cxx:14121:237: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T18:46:29,813 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,814 | ^~~ 2023-09-08T18:46:29,814 | | 2023-09-08T18:46:29,815 | int 2023-09-08T18:46:29,816 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,816 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,817 | ^~~~~ 2023-09-08T18:46:29,817 pybedtools/cbedtools.cxx:14121:242: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2023-09-08T18:46:29,818 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,819 | ^~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,819 | | 2023-09-08T18:46:29,820 | PyObject* {aka _object*} 2023-09-08T18:46:29,821 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,821 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,822 | ^~~~ 2023-09-08T18:46:29,822 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2023-09-08T18:46:29,823 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,823 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,824 pybedtools/cbedtools.cxx:14121:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,824 14121 | __pyx_codeobj__73 = (PyObject*)__Pyx_PyCode_New(1, 0, 7, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__72, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_str, 181, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__73)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 181; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,825 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,826 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T18:46:29,826 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T18:46:29,827 | ^~~~~~~~~~ 2023-09-08T18:46:29,828 pybedtools/cbedtools.cxx:14133:241: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T18:46:29,829 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,829 | ^~~ 2023-09-08T18:46:29,830 | | 2023-09-08T18:46:29,831 | int 2023-09-08T18:46:29,832 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,832 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,833 | ^~~~~ 2023-09-08T18:46:29,834 pybedtools/cbedtools.cxx:14133:246: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2023-09-08T18:46:29,835 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,835 | ^~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,836 | | 2023-09-08T18:46:29,836 | PyObject* {aka _object*} 2023-09-08T18:46:29,837 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,837 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,838 | ^~~~ 2023-09-08T18:46:29,839 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2023-09-08T18:46:29,839 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:29,840 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,841 pybedtools/cbedtools.cxx:14133:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:29,841 14133 | __pyx_codeobj__75 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__74, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_ryan_proj_pybedtools_pybed, __pyx_n_s_overlap, 708, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__75)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 708; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T18:46:29,842 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,843 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T18:46:29,843 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T18:46:29,844 | ^~~~~~~~~~ 2023-09-08T18:46:29,845 pybedtools/cbedtools.cxx: In function ‘PyObject* PyInit_cbedtools()’: 2023-09-08T18:46:29,845 pybedtools/cbedtools.cxx:14250:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2023-09-08T18:46:29,846 14250 | __pyx_type_10pybedtools_9cbedtools_Interval.tp_print = 0; 2023-09-08T18:46:29,847 | ^~~~~~~~ 2023-09-08T18:46:29,847 pybedtools/cbedtools.cxx:14265:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2023-09-08T18:46:29,848 14265 | __pyx_type_10pybedtools_9cbedtools_IntervalIterator.tp_print = 0; 2023-09-08T18:46:29,848 | ^~~~~~~~ 2023-09-08T18:46:29,849 pybedtools/cbedtools.cxx:14269:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2023-09-08T18:46:29,850 14269 | __pyx_type_10pybedtools_9cbedtools_IntervalFile.tp_print = 0; 2023-09-08T18:46:29,850 | ^~~~~~~~ 2023-09-08T18:46:29,891 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2023-09-08T18:46:29,892 pybedtools/cbedtools.cxx:15202:37: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,892 15202 | return PyUnicode_FromUnicode(NULL, 0); 2023-09-08T18:46:29,893 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 2023-09-08T18:46:29,893 In file included from /usr/include/python3.11/unicodeobject.h:1042, 2023-09-08T18:46:29,894 from /usr/include/python3.11/Python.h:51: 2023-09-08T18:46:29,894 /usr/include/python3.11/cpython/unicodeobject.h:600:42: note: declared here 2023-09-08T18:46:29,895 600 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2023-09-08T18:46:29,896 | ^~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,896 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2023-09-08T18:46:29,897 /usr/include/python3.11/cpython/unicodeobject.h:664:52: warning: ‘Py_ssize_t PyUnicode_GET_SIZE(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,897 664 | # define PyUnicode_GET_SIZE(op) PyUnicode_GET_SIZE(_PyObject_CAST(op)) 2023-09-08T18:46:29,898 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,899 pybedtools/cbedtools.cxx:15272:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2023-09-08T18:46:29,899 15272 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T18:46:29,900 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,901 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T18:46:29,901 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T18:46:29,902 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,903 /usr/include/python3.11/cpython/unicodeobject.h:664:52: warning: ‘Py_ssize_t PyUnicode_GET_SIZE(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,903 664 | # define PyUnicode_GET_SIZE(op) PyUnicode_GET_SIZE(_PyObject_CAST(op)) 2023-09-08T18:46:29,904 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,905 pybedtools/cbedtools.cxx:15272:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2023-09-08T18:46:29,906 15272 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T18:46:29,906 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,907 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T18:46:29,907 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T18:46:29,908 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,909 /usr/include/python3.11/cpython/unicodeobject.h:664:52: warning: ‘Py_ssize_t PyUnicode_GET_SIZE(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,909 664 | # define PyUnicode_GET_SIZE(op) PyUnicode_GET_SIZE(_PyObject_CAST(op)) 2023-09-08T18:46:29,910 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,911 pybedtools/cbedtools.cxx:15288:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2023-09-08T18:46:29,911 15288 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T18:46:29,912 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,913 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T18:46:29,913 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T18:46:29,914 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,915 /usr/include/python3.11/cpython/unicodeobject.h:664:52: warning: ‘Py_ssize_t PyUnicode_GET_SIZE(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,915 664 | # define PyUnicode_GET_SIZE(op) PyUnicode_GET_SIZE(_PyObject_CAST(op)) 2023-09-08T18:46:29,916 | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,916 pybedtools/cbedtools.cxx:15288:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2023-09-08T18:46:29,917 15288 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T18:46:29,917 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,918 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T18:46:29,919 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T18:46:29,919 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,920 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSave(PyObject**, PyObject**, PyObject**)’: 2023-09-08T18:46:29,921 pybedtools/cbedtools.cxx:15618:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:29,921 15618 | *type = tstate->exc_type; 2023-09-08T18:46:29,922 | ^~~~~~~~ 2023-09-08T18:46:29,923 | curexc_type 2023-09-08T18:46:29,923 pybedtools/cbedtools.cxx:15619:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:29,924 15619 | *value = tstate->exc_value; 2023-09-08T18:46:29,925 | ^~~~~~~~~ 2023-09-08T18:46:29,925 | curexc_value 2023-09-08T18:46:29,926 pybedtools/cbedtools.cxx:15620:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:29,927 15620 | *tb = tstate->exc_traceback; 2023-09-08T18:46:29,928 | ^~~~~~~~~~~~~ 2023-09-08T18:46:29,928 | curexc_traceback 2023-09-08T18:46:29,929 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionReset(PyObject*, PyObject*, PyObject*)’: 2023-09-08T18:46:29,930 pybedtools/cbedtools.cxx:15632:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:29,930 15632 | tmp_type = tstate->exc_type; 2023-09-08T18:46:29,931 | ^~~~~~~~ 2023-09-08T18:46:29,932 | curexc_type 2023-09-08T18:46:29,932 pybedtools/cbedtools.cxx:15633:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:29,933 15633 | tmp_value = tstate->exc_value; 2023-09-08T18:46:29,934 | ^~~~~~~~~ 2023-09-08T18:46:29,934 | curexc_value 2023-09-08T18:46:29,935 pybedtools/cbedtools.cxx:15634:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:29,936 15634 | tmp_tb = tstate->exc_traceback; 2023-09-08T18:46:29,937 | ^~~~~~~~~~~~~ 2023-09-08T18:46:29,937 | curexc_traceback 2023-09-08T18:46:29,938 pybedtools/cbedtools.cxx:15635:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:29,939 15635 | tstate->exc_type = type; 2023-09-08T18:46:29,940 | ^~~~~~~~ 2023-09-08T18:46:29,941 | curexc_type 2023-09-08T18:46:29,941 pybedtools/cbedtools.cxx:15636:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:29,942 15636 | tstate->exc_value = value; 2023-09-08T18:46:29,942 | ^~~~~~~~~ 2023-09-08T18:46:29,943 | curexc_value 2023-09-08T18:46:29,944 pybedtools/cbedtools.cxx:15637:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:29,944 15637 | tstate->exc_traceback = tb; 2023-09-08T18:46:29,945 | ^~~~~~~~~~~~~ 2023-09-08T18:46:29,945 | curexc_traceback 2023-09-08T18:46:29,958 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_CyFunction_Call(PyObject*, PyObject*, PyObject*)’: 2023-09-08T18:46:29,958 pybedtools/cbedtools.cxx:16143:32: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,959 16143 | return PyCFunction_Call(func, arg, kw); 2023-09-08T18:46:29,959 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-09-08T18:46:29,960 In file included from /usr/include/python3.11/Python.h:65: 2023-09-08T18:46:29,961 /usr/include/python3.11/methodobject.h:52:43: note: declared here 2023-09-08T18:46:29,961 52 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2023-09-08T18:46:29,962 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,962 pybedtools/cbedtools.cxx: In function ‘int __Pyx_CyFunction_init()’: 2023-09-08T18:46:29,963 pybedtools/cbedtools.cxx:16208:41: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2023-09-08T18:46:29,964 16208 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2023-09-08T18:46:29,965 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,965 /usr/include/python3.11/methodobject.h:52:43: note: declared here 2023-09-08T18:46:29,966 52 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2023-09-08T18:46:29,967 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:29,972 pybedtools/cbedtools.cxx: In function ‘int __Pyx_GetException(PyObject**, PyObject**, PyObject**)’: 2023-09-08T18:46:29,972 pybedtools/cbedtools.cxx:16480:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:29,973 16480 | tmp_type = tstate->exc_type; 2023-09-08T18:46:29,974 | ^~~~~~~~ 2023-09-08T18:46:29,974 | curexc_type 2023-09-08T18:46:29,975 pybedtools/cbedtools.cxx:16481:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:29,976 16481 | tmp_value = tstate->exc_value; 2023-09-08T18:46:29,976 | ^~~~~~~~~ 2023-09-08T18:46:29,977 | curexc_value 2023-09-08T18:46:29,978 pybedtools/cbedtools.cxx:16482:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:29,979 16482 | tmp_tb = tstate->exc_traceback; 2023-09-08T18:46:29,979 | ^~~~~~~~~~~~~ 2023-09-08T18:46:29,980 | curexc_traceback 2023-09-08T18:46:29,981 pybedtools/cbedtools.cxx:16483:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:29,981 16483 | tstate->exc_type = local_type; 2023-09-08T18:46:29,982 | ^~~~~~~~ 2023-09-08T18:46:29,983 | curexc_type 2023-09-08T18:46:29,983 pybedtools/cbedtools.cxx:16484:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:29,984 16484 | tstate->exc_value = local_value; 2023-09-08T18:46:29,984 | ^~~~~~~~~ 2023-09-08T18:46:29,985 | curexc_value 2023-09-08T18:46:29,986 pybedtools/cbedtools.cxx:16485:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:29,986 16485 | tstate->exc_traceback = local_tb; 2023-09-08T18:46:29,987 | ^~~~~~~~~~~~~ 2023-09-08T18:46:29,987 | curexc_traceback 2023-09-08T18:46:29,999 pybedtools/cbedtools.cxx: In function ‘void __Pyx_ExceptionSwap(PyObject**, PyObject**, PyObject**)’: 2023-09-08T18:46:29,999 pybedtools/cbedtools.cxx:16809:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:30,000 16809 | tmp_type = tstate->exc_type; 2023-09-08T18:46:30,000 | ^~~~~~~~ 2023-09-08T18:46:30,000 | curexc_type 2023-09-08T18:46:30,001 pybedtools/cbedtools.cxx:16810:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:30,001 16810 | tmp_value = tstate->exc_value; 2023-09-08T18:46:30,002 | ^~~~~~~~~ 2023-09-08T18:46:30,003 | curexc_value 2023-09-08T18:46:30,003 pybedtools/cbedtools.cxx:16811:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:30,004 16811 | tmp_tb = tstate->exc_traceback; 2023-09-08T18:46:30,005 | ^~~~~~~~~~~~~ 2023-09-08T18:46:30,005 | curexc_traceback 2023-09-08T18:46:30,006 pybedtools/cbedtools.cxx:16812:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2023-09-08T18:46:30,007 16812 | tstate->exc_type = *type; 2023-09-08T18:46:30,007 | ^~~~~~~~ 2023-09-08T18:46:30,008 | curexc_type 2023-09-08T18:46:30,009 pybedtools/cbedtools.cxx:16813:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2023-09-08T18:46:30,009 16813 | tstate->exc_value = *value; 2023-09-08T18:46:30,010 | ^~~~~~~~~ 2023-09-08T18:46:30,011 | curexc_value 2023-09-08T18:46:30,011 pybedtools/cbedtools.cxx:16814:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2023-09-08T18:46:30,012 16814 | tstate->exc_traceback = *tb; 2023-09-08T18:46:30,013 | ^~~~~~~~~~~~~ 2023-09-08T18:46:30,013 | curexc_traceback 2023-09-08T18:46:30,021 pybedtools/cbedtools.cxx: In function ‘PyCodeObject* __Pyx_CreateCodeObjectForTraceback(const char*, int, int, const char*)’: 2023-09-08T18:46:30,021 pybedtools/cbedtools.cxx:17127:9: error: invalid conversion from ‘int’ to ‘PyObject*’ {aka ‘_object*’} [-fpermissive] 2023-09-08T18:46:30,022 17127 | py_line, 2023-09-08T18:46:30,023 | ^~~~~~~ 2023-09-08T18:46:30,023 | | 2023-09-08T18:46:30,024 | int 2023-09-08T18:46:30,025 pybedtools/cbedtools.cxx:70:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:30,025 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:30,026 | ^~~~~ 2023-09-08T18:46:30,027 pybedtools/cbedtools.cxx:17128:9: error: invalid conversion from ‘PyObject*’ {aka ‘_object*’} to ‘int’ [-fpermissive] 2023-09-08T18:46:30,027 17128 | __pyx_empty_bytes /*PyObject *lnotab*/ 2023-09-08T18:46:30,028 | ^~~~~~~~~~~~~~~~~ 2023-09-08T18:46:30,028 | | 2023-09-08T18:46:30,029 | PyObject* {aka _object*} 2023-09-08T18:46:30,029 pybedtools/cbedtools.cxx:70:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:30,030 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:30,030 | ^~~~ 2023-09-08T18:46:30,031 pybedtools/cbedtools.cxx:70:21: error: too few arguments to function ‘PyCodeObject* PyCode_New(int, int, int, int, int, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, int, PyObject*, PyObject*)’ 2023-09-08T18:46:30,031 70 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T18:46:30,032 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:30,033 pybedtools/cbedtools.cxx:17113:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T18:46:30,033 17113 | py_code = __Pyx_PyCode_New( 2023-09-08T18:46:30,034 | ^~~~~~~~~~~~~~~~ 2023-09-08T18:46:30,034 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T18:46:30,035 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T18:46:30,036 | ^~~~~~~~~~ 2023-09-08T18:46:30,037 pybedtools/cbedtools.cxx: In function ‘void __Pyx_AddTraceback(const char*, int, int, const char*)’: 2023-09-08T18:46:30,037 pybedtools/cbedtools.cxx:17156:13: error: invalid use of incomplete type ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-08T18:46:30,038 17156 | py_frame->f_lineno = py_line; 2023-09-08T18:46:30,039 | ^~ 2023-09-08T18:46:30,039 In file included from /usr/include/python3.11/Python.h:42: 2023-09-08T18:46:30,040 /usr/include/python3.11/pytypedefs.h:22:16: note: forward declaration of ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-08T18:46:30,041 22 | typedef struct _frame PyFrameObject; 2023-09-08T18:46:30,041 | ^~~~~~ 2023-09-08T18:46:30,762 pybedtools/cbedtools.cxx: At global scope: 2023-09-08T18:46:30,763 pybedtools/cbedtools.cxx:7940:12: warning: ‘int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject*)’ defined but not used [-Wunused-function] 2023-09-08T18:46:30,764 7940 | static int __pyx_pw_10pybedtools_9cbedtools_8Interval_33__nonzero__(PyObject *__pyx_v_self) { 2023-09-08T18:46:30,765 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T18:46:30,777 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T18:46:30,886 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T18:46:30,900 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T18:46:30,900 exec(compile('"'"''"'"''"'"' 2023-09-08T18:46:30,900 # This is -- a caller that pip uses to run setup.py 2023-09-08T18:46:30,900 # 2023-09-08T18:46:30,900 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T18:46:30,900 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T18:46:30,900 # - It provides a clear error message when setuptools is not installed. 2023-09-08T18:46:30,900 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T18:46:30,900 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T18:46:30,900 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T18:46:30,900 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T18:46:30,900 import os, sys, tokenize 2023-09-08T18:46:30,900 2023-09-08T18:46:30,900 try: 2023-09-08T18:46:30,900 import setuptools 2023-09-08T18:46:30,900 except ImportError as error: 2023-09-08T18:46:30,900 print( 2023-09-08T18:46:30,900 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T18:46:30,900 "the build environment.", 2023-09-08T18:46:30,900 file=sys.stderr, 2023-09-08T18:46:30,900 ) 2023-09-08T18:46:30,900 sys.exit(1) 2023-09-08T18:46:30,900 2023-09-08T18:46:30,900 __file__ = %r 2023-09-08T18:46:30,900 sys.argv[0] = __file__ 2023-09-08T18:46:30,900 2023-09-08T18:46:30,900 if os.path.exists(__file__): 2023-09-08T18:46:30,900 filename = __file__ 2023-09-08T18:46:30,900 with tokenize.open(__file__) as f: 2023-09-08T18:46:30,900 setup_py_code = f.read() 2023-09-08T18:46:30,900 else: 2023-09-08T18:46:30,900 filename = "" 2023-09-08T18:46:30,900 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T18:46:30,900 2023-09-08T18:46:30,900 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T18:46:30,900 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-shzn82b0[/] 2023-09-08T18:46:30,900 [bold magenta]cwd[/]: /tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/ 2023-09-08T18:46:30,901 Building wheel for pybedtools (setup.py): finished with status 'error' 2023-09-08T18:46:30,902 ERROR: Failed building wheel for pybedtools 2023-09-08T18:46:30,904 Running setup.py clean for pybedtools 2023-09-08T18:46:30,905 Running command python setup.py clean 2023-09-08T18:46:31,395 /tmp/pip-wheel-ic_8h75j/pybedtools_4be8f83809b24fa187044ac4b91481b1/setup.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-08T18:46:31,396 import pkg_resources 2023-09-08T18:46:31,977 running clean 2023-09-08T18:46:32,122 Failed to build pybedtools 2023-09-08T18:46:32,123 ERROR: Failed to build one or more wheels 2023-09-08T18:46:32,124 Exception information: 2023-09-08T18:46:32,124 Traceback (most recent call last): 2023-09-08T18:46:32,124 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T18:46:32,124 status = run_func(*args) 2023-09-08T18:46:32,124 ^^^^^^^^^^^^^^^ 2023-09-08T18:46:32,124 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T18:46:32,124 return func(self, options, args) 2023-09-08T18:46:32,124 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:46:32,124 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T18:46:32,124 raise CommandError("Failed to build one or more wheels") 2023-09-08T18:46:32,124 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T18:46:32,128 Removed build tracker: '/tmp/pip-build-tracker-f51vn1u1'