2023-09-08T19:44:06,872 Created temporary directory: /tmp/pip-build-tracker-ejybs8pu 2023-09-08T19:44:06,873 Initialized build tracking at /tmp/pip-build-tracker-ejybs8pu 2023-09-08T19:44:06,873 Created build tracker: /tmp/pip-build-tracker-ejybs8pu 2023-09-08T19:44:06,874 Entered build tracker: /tmp/pip-build-tracker-ejybs8pu 2023-09-08T19:44:06,875 Created temporary directory: /tmp/pip-wheel-odideyv4 2023-09-08T19:44:06,878 Created temporary directory: /tmp/pip-ephem-wheel-cache-3y_wp6ja 2023-09-08T19:44:06,900 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T19:44:06,903 2 location(s) to search for versions of pybigwig: 2023-09-08T19:44:06,903 * https://pypi.org/simple/pybigwig/ 2023-09-08T19:44:06,903 * https://www.piwheels.org/simple/pybigwig/ 2023-09-08T19:44:06,904 Fetching project page and analyzing links: https://pypi.org/simple/pybigwig/ 2023-09-08T19:44:06,905 Getting page https://pypi.org/simple/pybigwig/ 2023-09-08T19:44:06,907 Found 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https://files.pythonhosted.org/packages/7b/b7/e135efa69cd146d22920c196e4575d2ff5a0b19c8f3a29634f5b4c639764/pyBigWig-0.3.11.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.11 2023-09-08T19:44:07,145 Found link https://files.pythonhosted.org/packages/d5/0d/8e2a1edb9524790c6a4d0b70bc800a8e4afee1bc7bdd048c54b8d9cf1c32/pyBigWig-0.3.12.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.12 2023-09-08T19:44:07,146 Found link https://files.pythonhosted.org/packages/5c/9c/2e01d04b6fd31c1e09537c8f51410123c087da4974bdb0fcdb7ec25dab62/pyBigWig-0.3.13.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.13 2023-09-08T19:44:07,146 Found link https://files.pythonhosted.org/packages/b2/5f/31086a89f067e0f0ad3b5b039e1d99ed7f4e5e7bc0fe156aef724a45ed06/pyBigWig-0.3.14.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.14 2023-09-08T19:44:07,147 Found link https://files.pythonhosted.org/packages/99/c0/c53056f4496b2bacfaa014f0f3fc74934827cd4ce933f94fe870eaf65181/pyBigWig-0.3.15.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.15 2023-09-08T19:44:07,147 Found link https://files.pythonhosted.org/packages/67/c8/741cca63e6a8688ef22a605bb06cc849fc57df419027013f2d1181f184f8/pyBigWig-0.3.16.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.16 2023-09-08T19:44:07,148 Found link https://files.pythonhosted.org/packages/b0/e2/cf945d541a10bb9c675f986d5bf0b0268544721054d17cc6260cfcfb3685/pyBigWig-0.3.17.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.17 2023-09-08T19:44:07,149 Found link https://files.pythonhosted.org/packages/23/29/b51c3580427dd66dfecd63ffbe2dfa37175d3c898b289a3f27def1be34c0/pyBigWig-0.3.18.tar.gz (from https://pypi.org/simple/pybigwig/), version: 0.3.18 2023-09-08T19:44:07,150 Found link https://files.pythonhosted.org/packages/9d/91/47d95d060d5525d21519132f27fa7c2a168255b497fdf4ff8b2dd0623558/pyBigWig-0.3.19.tar.gz (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7), version: 0.3.19 2023-09-08T19:44:07,151 Found link https://files.pythonhosted.org/packages/e2/18/eb175e8a15ae2822ffdab1e666dc8d081b1245e1064f2b36033af0076f3e/pyBigWig-0.3.20.tar.gz (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7), version: 0.3.20 2023-09-08T19:44:07,151 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/f4/4f/a86214d19e2f3c09d6de810716f2980a4f5dfab91b06136becfb655c705b/pyBigWig-0.3.21-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,152 Found link https://files.pythonhosted.org/packages/61/36/fdd88e5f84c2c0abe7b69470061766418112954cc7eae2a0d42921e65daa/pyBigWig-0.3.21.tar.gz (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7), version: 0.3.21 2023-09-08T19:44:07,153 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/3b/9c/b86f24903d39531876b98cb9b2bf17a3d4fcff5fa8a17dab9971bbe920f9/pyBigWig-0.3.22-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,153 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/33/39/a285068f210f7d96f6f7dc3eca814d555e9081e176158752d00883bf6175/pyBigWig-0.3.22-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,154 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/2b/b1/69afae16f08b9d63d0519d45fa64a96db19f637cdf25880974616889492f/pyBigWig-0.3.22-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,154 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/38/61/18c83ee35675f6ba26b1690347c7e9e378e0ad00a95f8b1c5fba9b867af0/pyBigWig-0.3.22-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,155 Skipping link: No binaries permitted for pybigwig: https://files.pythonhosted.org/packages/eb/6b/5524bb20b2c3f4914b0b4d2d5f255a844b4df4ba6853079ca30402f70c38/pyBigWig-0.3.22-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,155 Found link https://files.pythonhosted.org/packages/f0/57/334db9a75d6941876ef282cc7eb1885a24fe71d3c6522c19f717db4f8b73/pyBigWig-0.3.22.tar.gz (from https://pypi.org/simple/pybigwig/) (requires-python:>=3.7), version: 0.3.22 2023-09-08T19:44:07,156 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybigwig/ 2023-09-08T19:44:07,157 Getting page https://www.piwheels.org/simple/pybigwig/ 2023-09-08T19:44:07,158 Found index url https://www.piwheels.org/simple/ 2023-09-08T19:44:07,528 Fetched page https://www.piwheels.org/simple/pybigwig/ as text/html 2023-09-08T19:44:07,605 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.3.22-cp39-cp39-linux_armv7l.whl#sha256=04ee7892b4901540ada8b22c8208135751d8107ee3c2b5b6a71f8924c011d53f (from https://www.piwheels.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,607 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.3.22-cp39-cp39-linux_armv6l.whl#sha256=04ee7892b4901540ada8b22c8208135751d8107ee3c2b5b6a71f8924c011d53f (from https://www.piwheels.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,608 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.3.22-cp37-cp37m-linux_armv7l.whl#sha256=c93bd6825ece1379643944297a4f9a33c010b3feb6e5a1c0311abcbe2775e707 (from https://www.piwheels.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,609 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.3.22-cp37-cp37m-linux_armv6l.whl#sha256=c93bd6825ece1379643944297a4f9a33c010b3feb6e5a1c0311abcbe2775e707 (from https://www.piwheels.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,610 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.3.21-cp37-abi3-linux_armv7l.whl#sha256=777e9e55c1ef9870fa2221f3ffe8904eea3dcba222b1278ac704bfffc4cd7c41 (from https://www.piwheels.org/simple/pybigwig/) (requires-python:>=3.7) 2023-09-08T19:44:07,611 Skipping link: No binaries permitted for pybigwig: 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https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,694 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.4-cp37-cp37m-linux_armv7l.whl#sha256=02ab2a553dc9eef3a0dea29260ed4249a9457277072140278e91ced28c26bb8f (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,694 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.3-cp39-cp39-linux_armv7l.whl#sha256=6e5ea400e6a95bfa9a75a4533a8b19b811ad5148493e4921cba11447469f0b7c (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,695 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.3-cp39-cp39-linux_armv6l.whl#sha256=6e5ea400e6a95bfa9a75a4533a8b19b811ad5148493e4921cba11447469f0b7c (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,696 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.3-cp37-cp37m-linux_armv7l.whl#sha256=97c2dd8d2cac3ffb882103b4705a91de437a131d7a3f76540e3f9a04eaa98eff (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,696 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.3-cp37-cp37m-linux_armv6l.whl#sha256=97c2dd8d2cac3ffb882103b4705a91de437a131d7a3f76540e3f9a04eaa98eff (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,697 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.1-cp39-cp39-linux_armv7l.whl#sha256=3e7b6a14590b81fc0849054fc911db90993dbb401d0e60a0de9322644f864547 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,697 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.1-cp39-cp39-linux_armv6l.whl#sha256=3e7b6a14590b81fc0849054fc911db90993dbb401d0e60a0de9322644f864547 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,698 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.1-cp37-cp37m-linux_armv7l.whl#sha256=6771d6067a00918d24e4e1b640e5f9657c0ce682a06427af5078f8577ccd6e63 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,698 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.1-cp37-cp37m-linux_armv6l.whl#sha256=6771d6067a00918d24e4e1b640e5f9657c0ce682a06427af5078f8577ccd6e63 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,699 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=834780f18dc7a2d64d89c5efa220d8488a49b40a414044990add6c428476b184 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,699 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=834780f18dc7a2d64d89c5efa220d8488a49b40a414044990add6c428476b184 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,700 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=adfbfba3ddfe6fa3b8b5225ca0623bb589852afb229847e1be06544e5f5737a7 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,701 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=adfbfba3ddfe6fa3b8b5225ca0623bb589852afb229847e1be06544e5f5737a7 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,702 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.11-cp37-cp37m-linux_armv7l.whl#sha256=9b271b15d8f9c1a91a34f18e7723e44a16e8d6c2cabadc80413b0c685618f65e (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,702 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.11-cp37-cp37m-linux_armv6l.whl#sha256=9b271b15d8f9c1a91a34f18e7723e44a16e8d6c2cabadc80413b0c685618f65e (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,703 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1dd741303efdb5abfd38d79f519c4910f3ef4a13c2e9406f3c07a9b2f3d4f871 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,703 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1dd741303efdb5abfd38d79f519c4910f3ef4a13c2e9406f3c07a9b2f3d4f871 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,704 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.9-cp37-cp37m-linux_armv7l.whl#sha256=1343adcaf90f18cae142f1e989381b3f774f907f87ceb9abd11fd5bb4c2079a2 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,705 Skipping link: No binaries permitted for pybigwig: https://www.piwheels.org/simple/pybigwig/pyBigWig-0.1.9-cp37-cp37m-linux_armv6l.whl#sha256=1343adcaf90f18cae142f1e989381b3f774f907f87ceb9abd11fd5bb4c2079a2 (from https://www.piwheels.org/simple/pybigwig/) 2023-09-08T19:44:07,706 Skipping link: not a file: https://www.piwheels.org/simple/pybigwig/ 2023-09-08T19:44:07,706 Skipping link: not a file: https://pypi.org/simple/pybigwig/ 2023-09-08T19:44:07,730 Given no hashes to check 1 links for project 'pybigwig': discarding no candidates 2023-09-08T19:44:07,749 Collecting pybigwig==0.1.9 2023-09-08T19:44:07,752 Created temporary directory: /tmp/pip-unpack-lioy7lh9 2023-09-08T19:44:07,969 Downloading pyBigWig-0.1.9.tar.gz (29 kB) 2023-09-08T19:44:08,026 Added pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-ejybs8pu' 2023-09-08T19:44:08,027 Running setup.py (path:/tmp/pip-wheel-odideyv4/pybigwig_81380ec4ab8e4ccbbdbb110289349345/setup.py) egg_info for package pybigwig 2023-09-08T19:44:08,028 Created temporary directory: /tmp/pip-pip-egg-info-1v3z15je 2023-09-08T19:44:08,029 Preparing metadata (setup.py): started 2023-09-08T19:44:08,030 Running command python setup.py egg_info 2023-09-08T19:44:08,504 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:08,505 !! 2023-09-08T19:44:08,506 ******************************************************************************** 2023-09-08T19:44:08,506 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:08,507 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:08,508 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:08,509 or your builds will no longer be supported. 2023-09-08T19:44:08,510 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:08,511 ******************************************************************************** 2023-09-08T19:44:08,512 !! 2023-09-08T19:44:08,512 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:09,029 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:09,030 !! 2023-09-08T19:44:09,031 ******************************************************************************** 2023-09-08T19:44:09,032 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:09,032 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:09,033 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:09,034 or your builds will no longer be supported. 2023-09-08T19:44:09,035 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:09,036 ******************************************************************************** 2023-09-08T19:44:09,037 !! 2023-09-08T19:44:09,037 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:09,070 running egg_info 2023-09-08T19:44:09,071 creating /tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info 2023-09-08T19:44:09,095 writing /tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/PKG-INFO 2023-09-08T19:44:09,099 writing dependency_links to /tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/dependency_links.txt 2023-09-08T19:44:09,101 writing top-level names to /tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/top_level.txt 2023-09-08T19:44:09,102 writing manifest file '/tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/SOURCES.txt' 2023-09-08T19:44:09,199 reading manifest file '/tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/SOURCES.txt' 2023-09-08T19:44:09,201 reading manifest template 'MANIFEST.in' 2023-09-08T19:44:09,203 warning: no previously-included files found matching '.gitignore' 2023-09-08T19:44:09,204 warning: no previously-included files found matching '.gitmodules' 2023-09-08T19:44:09,205 warning: no previously-included files found matching '.travis.yml' 2023-09-08T19:44:09,205 warning: no previously-included files found matching 'pyBigWig.egg*' 2023-09-08T19:44:09,205 adding license file 'LICENSE.txt' 2023-09-08T19:44:09,207 writing manifest file '/tmp/pip-pip-egg-info-1v3z15je/pyBigWig.egg-info/SOURCES.txt' 2023-09-08T19:44:09,318 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T19:44:09,321 Source in /tmp/pip-wheel-odideyv4/pybigwig_81380ec4ab8e4ccbbdbb110289349345 has version 0.1.9, which satisfies requirement pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz 2023-09-08T19:44:09,322 Removed pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-ejybs8pu' 2023-09-08T19:44:09,326 Created temporary directory: /tmp/pip-unpack-h7pzgwg4 2023-09-08T19:44:09,327 Created temporary directory: /tmp/pip-unpack-m6re7dg3 2023-09-08T19:44:09,329 Building wheels for collected packages: pybigwig 2023-09-08T19:44:09,333 Created temporary directory: /tmp/pip-wheel-d7jr3nvg 2023-09-08T19:44:09,334 Building wheel for pybigwig (setup.py): started 2023-09-08T19:44:09,335 Destination directory: /tmp/pip-wheel-d7jr3nvg 2023-09-08T19:44:09,336 Running command python setup.py bdist_wheel 2023-09-08T19:44:09,778 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:09,779 !! 2023-09-08T19:44:09,780 ******************************************************************************** 2023-09-08T19:44:09,780 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:09,781 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:09,782 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:09,783 or your builds will no longer be supported. 2023-09-08T19:44:09,784 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:09,785 ******************************************************************************** 2023-09-08T19:44:09,786 !! 2023-09-08T19:44:09,786 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:10,297 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:10,298 !! 2023-09-08T19:44:10,299 ******************************************************************************** 2023-09-08T19:44:10,300 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:10,300 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:10,301 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:10,302 or your builds will no longer be supported. 2023-09-08T19:44:10,304 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:10,304 ******************************************************************************** 2023-09-08T19:44:10,305 !! 2023-09-08T19:44:10,305 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:10,330 running bdist_wheel 2023-09-08T19:44:10,421 running build 2023-09-08T19:44:10,421 running build_py 2023-09-08T19:44:10,447 creating build 2023-09-08T19:44:10,448 creating build/lib.linux-armv7l-cpython-311 2023-09-08T19:44:10,448 creating build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,450 copying pyBigWigTest/__init__.py -> build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,451 copying pyBigWigTest/test.py -> build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,453 running egg_info 2023-09-08T19:44:10,507 writing pyBigWig.egg-info/PKG-INFO 2023-09-08T19:44:10,509 writing dependency_links to pyBigWig.egg-info/dependency_links.txt 2023-09-08T19:44:10,511 writing top-level names to pyBigWig.egg-info/top_level.txt 2023-09-08T19:44:10,537 reading manifest file 'pyBigWig.egg-info/SOURCES.txt' 2023-09-08T19:44:10,539 reading manifest template 'MANIFEST.in' 2023-09-08T19:44:10,541 warning: no previously-included files found matching '.gitignore' 2023-09-08T19:44:10,542 warning: no previously-included files found matching '.gitmodules' 2023-09-08T19:44:10,542 warning: no previously-included files found matching '.travis.yml' 2023-09-08T19:44:10,543 warning: no previously-included files found matching 'pyBigWig.egg*' 2023-09-08T19:44:10,543 adding license file 'LICENSE.txt' 2023-09-08T19:44:10,545 writing manifest file 'pyBigWig.egg-info/SOURCES.txt' 2023-09-08T19:44:10,547 copying pyBigWigTest/__init__.pyc -> build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,549 copying pyBigWigTest/test.bw -> build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,551 copying pyBigWigTest/test.pyc -> build/lib.linux-armv7l-cpython-311/pyBigWigTest 2023-09-08T19:44:10,554 running build_ext 2023-09-08T19:44:11,052 building 'pyBigWig' extension 2023-09-08T19:44:11,052 creating build/temp.linux-armv7l-cpython-311 2023-09-08T19:44:11,053 creating build/temp.linux-armv7l-cpython-311/libBigWig 2023-09-08T19:44:11,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IlibBigWig -I/usr/include/python3.11 -c libBigWig/bwRead.c -o build/temp.linux-armv7l-cpython-311/libBigWig/bwRead.o 2023-09-08T19:44:11,659 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IlibBigWig -I/usr/include/python3.11 -c libBigWig/bwStats.c -o build/temp.linux-armv7l-cpython-311/libBigWig/bwStats.o 2023-09-08T19:44:11,865 libBigWig/bwStats.c: In function ‘getVals’: 2023-09-08T19:44:11,866 libBigWig/bwStats.c:97:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uLongf’ {aka ‘long unsigned int’} [-Wsign-compare] 2023-09-08T19:44:11,866 97 | while((void*)p-buf < sz) { 2023-09-08T19:44:11,867 | ^ 2023-09-08T19:44:11,876 libBigWig/bwStats.c: In function ‘bwStats’: 2023-09-08T19:44:11,876 libBigWig/bwStats.c:478:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:11,878 478 | if(tid == -1) return NULL; 2023-09-08T19:44:11,879 | ^~ 2023-09-08T19:44:12,671 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IlibBigWig -I/usr/include/python3.11 -c libBigWig/bwValues.c -o build/temp.linux-armv7l-cpython-311/libBigWig/bwValues.o 2023-09-08T19:44:12,844 libBigWig/bwValues.c: In function ‘bwGetOverlappingBlocks’: 2023-09-08T19:44:12,844 libBigWig/bwValues.c:287:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:12,845 287 | if(tid == -1) { 2023-09-08T19:44:12,846 | ^~ 2023-09-08T19:44:12,850 libBigWig/bwValues.c: In function ‘bwGetOverlappingIntervals’: 2023-09-08T19:44:12,851 libBigWig/bwValues.c:443:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:12,852 443 | if(tid == -1) return NULL; 2023-09-08T19:44:12,852 | ^~ 2023-09-08T19:44:13,615 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IlibBigWig -I/usr/include/python3.11 -c libBigWig/io.c -o build/temp.linux-armv7l-cpython-311/libBigWig/io.o 2023-09-08T19:44:13,773 libBigWig/io.c: In function ‘getContentLength’: 2023-09-08T19:44:13,774 libBigWig/io.c:13:5: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 2023-09-08T19:44:13,774 13 | if(curl_easy_getinfo(URL->x.curl, CURLINFO_CONTENT_LENGTH_DOWNLOAD, &size) != CURLE_OK) { 2023-09-08T19:44:13,775 | ^~ 2023-09-08T19:44:13,776 In file included from libBigWig/io.c:1: 2023-09-08T19:44:13,776 /usr/include/arm-linux-gnueabihf/curl/curl.h:2858:3: note: declared here 2023-09-08T19:44:13,777 2858 | CURLINFO_CONTENT_LENGTH_DOWNLOAD 2023-09-08T19:44:13,777 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-08T19:44:13,778 libBigWig/io.c: In function ‘urlFetchData’: 2023-09-08T19:44:13,779 libBigWig/io.c:25:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:13,779 25 | if(URL->filePos != -1) URL->filePos += URL->bufLen; 2023-09-08T19:44:13,780 | ^~ 2023-09-08T19:44:13,781 libBigWig/io.c: In function ‘urlSeek’: 2023-09-08T19:44:13,782 libBigWig/io.c:111:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-08T19:44:13,782 111 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2023-09-08T19:44:13,783 | ~~^ ~~~ 2023-09-08T19:44:13,784 | | | 2023-09-08T19:44:13,784 | | size_t {aka unsigned int} 2023-09-08T19:44:13,785 | long unsigned int 2023-09-08T19:44:13,786 | %u 2023-09-08T19:44:13,787 libBigWig/io.c:111:34: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-08T19:44:13,787 111 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2023-09-08T19:44:13,788 | ~~^ ~~~~~~~~~~~~~~~~~~ 2023-09-08T19:44:13,788 | | | 2023-09-08T19:44:13,789 | long unsigned int size_t {aka unsigned int} 2023-09-08T19:44:13,790 | %u 2023-09-08T19:44:13,805 libBigWig/io.c: In function ‘urlOpen’: 2023-09-08T19:44:13,805 libBigWig/io.c:178:29: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-09-08T19:44:13,806 178 | sprintf(range, "0-%lu", URL->bufSize-1); 2023-09-08T19:44:13,807 | ~~^ ~~~~~~~~~~~~~~ 2023-09-08T19:44:13,808 | | | 2023-09-08T19:44:13,808 | | size_t {aka unsigned int} 2023-09-08T19:44:13,809 | long unsigned int 2023-09-08T19:44:13,810 | %u 2023-09-08T19:44:14,114 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -IlibBigWig -I/usr/include/python3.11 -c pyBigWig.c -o build/temp.linux-armv7l-cpython-311/pyBigWig.o 2023-09-08T19:44:14,515 pyBigWig.c: In function ‘pyBwGetStats’: 2023-09-08T19:44:14,515 pyBigWig.c:149:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,516 149 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,516 | ^~ 2023-09-08T19:44:14,517 pyBigWig.c:149:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,517 149 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,518 | ^~ 2023-09-08T19:44:14,518 pyBigWig.c:150:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,519 150 | if(tid == -1 || startl > end || endl > end) { 2023-09-08T19:44:14,519 | ^~ 2023-09-08T19:44:14,520 pyBigWig.c: In function ‘pyBwGetValues’: 2023-09-08T19:44:14,521 pyBigWig.c:198:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,521 198 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,522 | ^~ 2023-09-08T19:44:14,523 pyBigWig.c:198:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,523 198 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,524 | ^~ 2023-09-08T19:44:14,525 pyBigWig.c:199:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,525 199 | if(tid == -1 || startl > end || endl > end) { 2023-09-08T19:44:14,526 | ^~ 2023-09-08T19:44:14,527 pyBigWig.c:217:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-09-08T19:44:14,527 217 | for(i=0; il; i++) PyList_SetItem(ret, i, PyFloat_FromDouble(o->value[i])); 2023-09-08T19:44:14,528 | ^ 2023-09-08T19:44:14,529 pyBigWig.c: In function ‘pyBwGetIntervals’: 2023-09-08T19:44:14,529 pyBigWig.c:240:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,530 240 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,530 | ^~ 2023-09-08T19:44:14,531 pyBigWig.c:240:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,532 240 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2023-09-08T19:44:14,532 | ^~ 2023-09-08T19:44:14,533 pyBigWig.c:241:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-09-08T19:44:14,534 241 | if(tid == -1 || startl > end || endl > end) { 2023-09-08T19:44:14,535 | ^~ 2023-09-08T19:44:14,969 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/libBigWig/bwRead.o build/temp.linux-armv7l-cpython-311/libBigWig/bwStats.o build/temp.linux-armv7l-cpython-311/libBigWig/bwValues.o build/temp.linux-armv7l-cpython-311/libBigWig/io.o build/temp.linux-armv7l-cpython-311/pyBigWig.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lm -lz -lcurl -lpython3.11m -o build/lib.linux-armv7l-cpython-311/pyBigWig.cpython-311-arm-linux-gnueabihf.so 2023-09-08T19:44:15,006 /usr/bin/ld: cannot find -lpython3.11m: No such file or directory 2023-09-08T19:44:15,021 collect2: error: ld returned 1 exit status 2023-09-08T19:44:15,022 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T19:44:15,167 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T19:44:15,180 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T19:44:15,180 exec(compile('"'"''"'"''"'"' 2023-09-08T19:44:15,180 # This is -- a caller that pip uses to run setup.py 2023-09-08T19:44:15,180 # 2023-09-08T19:44:15,180 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T19:44:15,180 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T19:44:15,180 # - It provides a clear error message when setuptools is not installed. 2023-09-08T19:44:15,180 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T19:44:15,180 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T19:44:15,180 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T19:44:15,180 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T19:44:15,180 import os, sys, tokenize 2023-09-08T19:44:15,180 2023-09-08T19:44:15,180 try: 2023-09-08T19:44:15,180 import setuptools 2023-09-08T19:44:15,180 except ImportError as error: 2023-09-08T19:44:15,180 print( 2023-09-08T19:44:15,180 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T19:44:15,180 "the build environment.", 2023-09-08T19:44:15,180 file=sys.stderr, 2023-09-08T19:44:15,180 ) 2023-09-08T19:44:15,180 sys.exit(1) 2023-09-08T19:44:15,180 2023-09-08T19:44:15,180 __file__ = %r 2023-09-08T19:44:15,180 sys.argv[0] = __file__ 2023-09-08T19:44:15,180 2023-09-08T19:44:15,180 if os.path.exists(__file__): 2023-09-08T19:44:15,180 filename = __file__ 2023-09-08T19:44:15,180 with tokenize.open(__file__) as f: 2023-09-08T19:44:15,180 setup_py_code = f.read() 2023-09-08T19:44:15,180 else: 2023-09-08T19:44:15,180 filename = "" 2023-09-08T19:44:15,180 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T19:44:15,180 2023-09-08T19:44:15,180 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T19:44:15,180 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-odideyv4/pybigwig_81380ec4ab8e4ccbbdbb110289349345/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-d7jr3nvg[/] 2023-09-08T19:44:15,181 [bold magenta]cwd[/]: /tmp/pip-wheel-odideyv4/pybigwig_81380ec4ab8e4ccbbdbb110289349345/ 2023-09-08T19:44:15,181 Building wheel for pybigwig (setup.py): finished with status 'error' 2023-09-08T19:44:15,183 ERROR: Failed building wheel for pybigwig 2023-09-08T19:44:15,184 Running setup.py clean for pybigwig 2023-09-08T19:44:15,185 Running command python setup.py clean 2023-09-08T19:44:15,663 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:15,663 !! 2023-09-08T19:44:15,664 ******************************************************************************** 2023-09-08T19:44:15,665 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:15,666 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:15,667 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:15,668 or your builds will no longer be supported. 2023-09-08T19:44:15,668 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:15,669 ******************************************************************************** 2023-09-08T19:44:15,670 !! 2023-09-08T19:44:15,670 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:16,217 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-08T19:44:16,217 !! 2023-09-08T19:44:16,218 ******************************************************************************** 2023-09-08T19:44:16,219 Usage of dash-separated 'description-file' will not be supported in future 2023-09-08T19:44:16,219 versions. Please use the underscore name 'description_file' instead. 2023-09-08T19:44:16,220 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-08T19:44:16,221 or your builds will no longer be supported. 2023-09-08T19:44:16,221 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-08T19:44:16,222 ******************************************************************************** 2023-09-08T19:44:16,223 !! 2023-09-08T19:44:16,223 opt = self.warn_dash_deprecation(opt, section) 2023-09-08T19:44:16,251 running clean 2023-09-08T19:44:16,296 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T19:44:16,299 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T19:44:16,302 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T19:44:16,302 'build/scripts-3.11' does not exist -- can't clean it 2023-09-08T19:44:16,303 removing 'build' 2023-09-08T19:44:16,411 Failed to build pybigwig 2023-09-08T19:44:16,413 ERROR: Failed to build one or more wheels 2023-09-08T19:44:16,414 Exception information: 2023-09-08T19:44:16,414 Traceback (most recent call last): 2023-09-08T19:44:16,414 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T19:44:16,414 status = run_func(*args) 2023-09-08T19:44:16,414 ^^^^^^^^^^^^^^^ 2023-09-08T19:44:16,414 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T19:44:16,414 return func(self, options, args) 2023-09-08T19:44:16,414 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:44:16,414 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T19:44:16,414 raise CommandError("Failed to build one or more wheels") 2023-09-08T19:44:16,414 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T19:44:16,418 Removed build tracker: '/tmp/pip-build-tracker-ejybs8pu'