2023-09-08T19:49:20,783 Created temporary directory: /tmp/pip-build-tracker-s8rn9e8z 2023-09-08T19:49:20,784 Initialized build tracking at /tmp/pip-build-tracker-s8rn9e8z 2023-09-08T19:49:20,785 Created build tracker: /tmp/pip-build-tracker-s8rn9e8z 2023-09-08T19:49:20,785 Entered build tracker: /tmp/pip-build-tracker-s8rn9e8z 2023-09-08T19:49:20,786 Created temporary directory: /tmp/pip-wheel-3_of61_g 2023-09-08T19:49:20,789 Created temporary directory: /tmp/pip-ephem-wheel-cache-akodqojs 2023-09-08T19:49:20,810 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T19:49:20,814 2 location(s) to search for versions of scikit-bio: 2023-09-08T19:49:20,814 * https://pypi.org/simple/scikit-bio/ 2023-09-08T19:49:20,814 * https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T19:49:20,815 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2023-09-08T19:49:20,816 Getting page https://pypi.org/simple/scikit-bio/ 2023-09-08T19:49:20,817 Found index url https://pypi.org/simple/ 2023-09-08T19:49:21,033 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2023-09-08T19:49:21,038 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2023-09-08T19:49:21,039 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2023-09-08T19:49:21,040 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2023-09-08T19:49:21,040 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2023-09-08T19:49:21,041 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2023-09-08T19:49:21,042 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2023-09-08T19:49:21,042 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2023-09-08T19:49:21,043 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2023-09-08T19:49:21,044 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2023-09-08T19:49:21,044 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2023-09-08T19:49:21,045 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2023-09-08T19:49:21,046 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2023-09-08T19:49:21,046 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2023-09-08T19:49:21,047 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2023-09-08T19:49:21,048 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2023-09-08T19:49:21,048 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2023-09-08T19:49:21,049 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2023-09-08T19:49:21,049 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2023-09-08T19:49:21,050 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2023-09-08T19:49:21,051 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2023-09-08T19:49:21,051 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2023-09-08T19:49:21,052 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2023-09-08T19:49:21,052 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2023-09-08T19:49:21,053 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T19:49:21,054 Getting page https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T19:49:21,055 Found index url https://www.piwheels.org/simple/ 2023-09-08T19:49:21,374 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2023-09-08T19:49:21,381 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,382 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,382 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,383 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,384 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,384 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,385 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,386 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,387 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,387 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,388 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,388 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,389 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,390 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T19:49:21,391 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T19:49:21,391 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2023-09-08T19:49:21,422 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2023-09-08T19:49:21,448 Collecting scikit-bio==0.4.1 2023-09-08T19:49:21,451 Created temporary directory: /tmp/pip-unpack-rsvbpgxq 2023-09-08T19:49:21,678 Downloading scikit-bio-0.4.1.tar.gz (8.1 MB) 2023-09-08T19:49:25,088 Added scikit-bio==0.4.1 from https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-s8rn9e8z' 2023-09-08T19:49:25,089 Running setup.py (path:/tmp/pip-wheel-3_of61_g/scikit-bio_0f61c632f9394f9796b4652304b46591/setup.py) egg_info for package scikit-bio 2023-09-08T19:49:25,090 Created temporary directory: /tmp/pip-pip-egg-info-v_2hksq8 2023-09-08T19:49:25,091 Preparing metadata (setup.py): started 2023-09-08T19:49:25,092 Running command python setup.py egg_info 2023-09-08T19:49:25,997 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-08T19:49:25,997 !! 2023-09-08T19:49:25,998 ******************************************************************************** 2023-09-08T19:49:25,999 Requirements should be satisfied by a PEP 517 installer. 2023-09-08T19:49:26,000 If you are using pip, you can try `pip install --use-pep517`. 2023-09-08T19:49:26,000 ******************************************************************************** 2023-09-08T19:49:26,001 !! 2023-09-08T19:49:26,002 dist.fetch_build_eggs(dist.setup_requires) 2023-09-08T19:49:26,182 running egg_info 2023-09-08T19:49:26,183 creating /tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info 2023-09-08T19:49:26,207 writing /tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info/PKG-INFO 2023-09-08T19:49:26,210 writing dependency_links to /tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info/dependency_links.txt 2023-09-08T19:49:26,212 writing requirements to /tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info/requires.txt 2023-09-08T19:49:26,213 writing top-level names to /tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info/top_level.txt 2023-09-08T19:49:26,215 writing manifest file '/tmp/pip-pip-egg-info-v_2hksq8/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T19:49:26,339 Traceback (most recent call last): 2023-09-08T19:49:26,339 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-08T19:49:26,340 from . import multiarray 2023-09-08T19:49:26,341 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-08T19:49:26,341 from . import overrides 2023-09-08T19:49:26,342 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-08T19:49:26,343 from numpy.core._multiarray_umath import ( 2023-09-08T19:49:26,344 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-08T19:49:26,346 During handling of the above exception, another exception occurred: 2023-09-08T19:49:26,348 Traceback (most recent call last): 2023-09-08T19:49:26,349 File "", line 2, in 2023-09-08T19:49:26,350 File "", line 34, in 2023-09-08T19:49:26,351 File "/tmp/pip-wheel-3_of61_g/scikit-bio_0f61c632f9394f9796b4652304b46591/setup.py", line 95, in 2023-09-08T19:49:26,352 setup(name='scikit-bio', 2023-09-08T19:49:26,353 File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-08T19:49:26,354 return distutils.core.setup(**attrs) 2023-09-08T19:49:26,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,355 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-08T19:49:26,356 return run_commands(dist) 2023-09-08T19:49:26,357 ^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,358 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-08T19:49:26,359 dist.run_commands() 2023-09-08T19:49:26,359 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-08T19:49:26,360 self.run_command(cmd) 2023-09-08T19:49:26,362 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-08T19:49:26,363 super().run_command(command) 2023-09-08T19:49:26,364 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-08T19:49:26,365 cmd_obj.run() 2023-09-08T19:49:26,366 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 318, in run 2023-09-08T19:49:26,367 self.find_sources() 2023-09-08T19:49:26,368 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 326, in find_sources 2023-09-08T19:49:26,369 mm.run() 2023-09-08T19:49:26,370 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 548, in run 2023-09-08T19:49:26,371 self.add_defaults() 2023-09-08T19:49:26,372 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 586, in add_defaults 2023-09-08T19:49:26,373 sdist.add_defaults(self) 2023-09-08T19:49:26,375 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/sdist.py", line 113, in add_defaults 2023-09-08T19:49:26,376 super().add_defaults() 2023-09-08T19:49:26,377 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults 2023-09-08T19:49:26,378 self._add_defaults_ext() 2023-09-08T19:49:26,380 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext 2023-09-08T19:49:26,381 build_ext = self.get_finalized_command('build_ext') 2023-09-08T19:49:26,382 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,383 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command 2023-09-08T19:49:26,383 cmd_obj.ensure_finalized() 2023-09-08T19:49:26,384 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized 2023-09-08T19:49:26,385 self.finalize_options() 2023-09-08T19:49:26,385 File "/tmp/pip-wheel-3_of61_g/scikit-bio_0f61c632f9394f9796b4652304b46591/setup.py", line 28, in finalize_options 2023-09-08T19:49:26,386 import numpy 2023-09-08T19:49:26,387 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-08T19:49:26,387 from . import core 2023-09-08T19:49:26,388 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-08T19:49:26,389 raise ImportError(msg) 2023-09-08T19:49:26,389 ImportError: 2023-09-08T19:49:26,391 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-08T19:49:26,393 Importing the numpy C-extensions failed. This error can happen for 2023-09-08T19:49:26,393 many reasons, often due to issues with your setup or how NumPy was 2023-09-08T19:49:26,394 installed. 2023-09-08T19:49:26,396 We have compiled some common reasons and troubleshooting tips at: 2023-09-08T19:49:26,398 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-08T19:49:26,399 Please note and check the following: 2023-09-08T19:49:26,401 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-08T19:49:26,402 * The NumPy version is: "1.25.2" 2023-09-08T19:49:26,404 and make sure that they are the versions you expect. 2023-09-08T19:49:26,405 Please carefully study the documentation linked above for further help. 2023-09-08T19:49:26,406 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-08T19:49:26,483 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-08T19:49:26,495 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-08T19:49:26,495 exec(compile('"'"''"'"''"'"' 2023-09-08T19:49:26,495 # This is -- a caller that pip uses to run setup.py 2023-09-08T19:49:26,495 # 2023-09-08T19:49:26,495 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T19:49:26,495 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T19:49:26,495 # - It provides a clear error message when setuptools is not installed. 2023-09-08T19:49:26,495 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T19:49:26,495 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T19:49:26,495 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T19:49:26,495 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T19:49:26,495 import os, sys, tokenize 2023-09-08T19:49:26,495 2023-09-08T19:49:26,495 try: 2023-09-08T19:49:26,495 import setuptools 2023-09-08T19:49:26,495 except ImportError as error: 2023-09-08T19:49:26,495 print( 2023-09-08T19:49:26,495 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T19:49:26,495 "the build environment.", 2023-09-08T19:49:26,495 file=sys.stderr, 2023-09-08T19:49:26,495 ) 2023-09-08T19:49:26,495 sys.exit(1) 2023-09-08T19:49:26,495 2023-09-08T19:49:26,495 __file__ = %r 2023-09-08T19:49:26,495 sys.argv[0] = __file__ 2023-09-08T19:49:26,495 2023-09-08T19:49:26,495 if os.path.exists(__file__): 2023-09-08T19:49:26,495 filename = __file__ 2023-09-08T19:49:26,495 with tokenize.open(__file__) as f: 2023-09-08T19:49:26,495 setup_py_code = f.read() 2023-09-08T19:49:26,495 else: 2023-09-08T19:49:26,495 filename = "" 2023-09-08T19:49:26,495 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T19:49:26,495 2023-09-08T19:49:26,495 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T19:49:26,495 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-3_of61_g/scikit-bio_0f61c632f9394f9796b4652304b46591/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-v_2hksq8[/] 2023-09-08T19:49:26,496 [bold magenta]cwd[/]: /tmp/pip-wheel-3_of61_g/scikit-bio_0f61c632f9394f9796b4652304b46591/ 2023-09-08T19:49:26,497 Preparing metadata (setup.py): finished with status 'error' 2023-09-08T19:49:26,498 ERROR: [present-rich] metadata generation failed 2023-09-08T19:49:26,504 Exception information: 2023-09-08T19:49:26,504 Traceback (most recent call last): 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-08T19:49:26,504 call_subprocess( 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-08T19:49:26,504 raise error 2023-09-08T19:49:26,504 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-08T19:49:26,504 2023-09-08T19:49:26,504 The above exception was the direct cause of the following exception: 2023-09-08T19:49:26,504 2023-09-08T19:49:26,504 Traceback (most recent call last): 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T19:49:26,504 status = run_func(*args) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T19:49:26,504 return func(self, options, args) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-08T19:49:26,504 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-08T19:49:26,504 result = self._result = resolver.resolve( 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-08T19:49:26,504 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-08T19:49:26,504 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-08T19:49:26,504 if not criterion.candidates: 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-08T19:49:26,504 return bool(self._sequence) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-08T19:49:26,504 return any(self) 2023-09-08T19:49:26,504 ^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-08T19:49:26,504 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-08T19:49:26,504 candidate = func() 2023-09-08T19:49:26,504 ^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-08T19:49:26,504 self._link_candidate_cache[link] = LinkCandidate( 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-08T19:49:26,504 super().__init__( 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-08T19:49:26,504 self.dist = self._prepare() 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-08T19:49:26,504 dist = self._prepare_distribution() 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-08T19:49:26,504 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-08T19:49:26,504 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-08T19:49:26,504 dist = _get_prepared_distribution( 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-08T19:49:26,504 abstract_dist.prepare_distribution_metadata( 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-08T19:49:26,504 self.req.prepare_metadata() 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-08T19:49:26,504 self.metadata_directory = generate_metadata_legacy( 2023-09-08T19:49:26,504 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T19:49:26,504 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-08T19:49:26,504 raise MetadataGenerationFailed(package_details=details) from error 2023-09-08T19:49:26,504 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-08T19:49:26,516 Removed scikit-bio==0.4.1 from https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-s8rn9e8z' 2023-09-08T19:49:26,517 Removed build tracker: '/tmp/pip-build-tracker-s8rn9e8z'