2023-09-08T19:26:07,606 Created temporary directory: /tmp/pip-build-tracker-ie49g1tm
2023-09-08T19:26:07,608 Initialized build tracking at /tmp/pip-build-tracker-ie49g1tm
2023-09-08T19:26:07,608 Created build tracker: /tmp/pip-build-tracker-ie49g1tm
2023-09-08T19:26:07,608 Entered build tracker: /tmp/pip-build-tracker-ie49g1tm
2023-09-08T19:26:07,609 Created temporary directory: /tmp/pip-wheel-d86u_4e8
2023-09-08T19:26:07,612 Created temporary directory: /tmp/pip-ephem-wheel-cache-z2ovvm6q
2023-09-08T19:26:07,637 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T19:26:07,641 2 location(s) to search for versions of python-libsbml:
2023-09-08T19:26:07,641 * https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,641 * https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:07,642 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,643 Getting page https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,644 Found index url https://pypi.org/simple/
2023-09-08T19:26:07,826 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2023-09-08T19:26:07,910   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2023-09-08T19:26:07,911   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2023-09-08T19:26:07,912   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2023-09-08T19:26:07,912   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2023-09-08T19:26:07,913   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2023-09-08T19:26:07,914   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,915   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2023-09-08T19:26:07,915   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,916   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,917   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,917   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,918   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,919   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,920   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,920   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,921   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,922   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,922   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,923   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,923   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,924   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,925   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,925   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,926   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,927   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,927   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,928   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,929   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,929   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,930   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,930   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,931   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,931   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,932   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,932   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,933   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,934   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,934   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,935   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,935   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,936   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,937   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2023-09-08T19:26:07,938   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,938   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,939   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2023-09-08T19:26:07,939   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,940   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,940   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,941   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,941   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,942   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,943   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,943   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,944   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,945   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,946   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,947   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,947   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,948   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,948   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,949   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,949   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,950   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,950   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,951   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,952   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,952   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,953   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,954   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,954   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,955   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,956   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,956   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2023-09-08T19:26:07,957   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,957   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,958   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,958   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,959   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,960   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,960   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,961   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,961   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,962   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,963   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,963   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,964   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,965   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,965   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,966   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,966   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,967   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,968   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,968   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,969   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,969   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,970   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,971   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2023-09-08T19:26:07,971   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,972   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,973   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,973   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,974   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,974   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,975   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,975   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,976   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,976   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,977   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,978   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,978   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,979   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,979   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,980   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,981   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,981   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,982   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,982   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,983   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,983   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2023-09-08T19:26:07,984   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,985   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,985   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,986   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,987   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,987   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,988   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,988   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,989   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,990   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,990   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,991   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,991   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,992   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,992   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,993   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,994   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,994   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,995   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,996   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,996   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,997   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,997   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,998   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,999   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,999   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,000   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,000   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,001   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,001   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,002   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,002   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,003   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,004   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,004   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,005   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,006   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,007   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,007   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,008   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,008   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2023-09-08T19:26:08,009   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,010   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,010   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,011   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,011   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,012   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,012   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,013   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,014   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,014   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,015   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,016   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,016   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,017   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,017   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,018   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,018   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,019   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,020   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,020   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,021   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,021   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,022   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,023   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,023   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,024   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,025   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,025   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,026   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,026   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,027   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,027   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2023-09-08T19:26:08,028   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,028   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,029   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,030   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,030   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,031   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,032   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,033   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,033   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,034   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,034   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,034   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,035   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,036   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,036   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,037   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,038   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,038   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,039   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,039   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,040   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,041   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,041   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,042   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,042   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,043   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,043   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,044   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,045   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,045   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,046   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,047   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,047   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,048   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,049   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,049   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,050   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,050   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,051   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,051   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,052   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,052   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,053   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,054   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,055   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,055   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,056   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,056   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,057   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,058   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,058   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,059   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,059   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,059   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,060   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,061   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,061   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,062   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,063   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,063   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,064   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,065   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,065   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,066   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,066   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,067   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,067   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,068   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,068   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,069   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,069   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,070   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,071   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,071   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,072   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,073   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,074   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,074   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,075   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,075   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,075   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,076   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,077   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,077   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,078   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,079   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,079   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,080   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,080   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,081   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,082   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,082   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,083   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,083   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,084   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,084   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,085   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,085   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,086   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,087   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,087   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,088   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,088   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,089   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,090   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,090   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,091   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,091   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,092   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,092   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,093   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,094   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,094   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,095   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,095   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,096   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,096   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,097   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,098   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,098   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,099   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,099   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,100   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,100   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,101   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,101   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,102   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,103   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,103   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,104   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,105   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,105   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,106   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,106   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,107   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,107   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,108   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,108   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,109   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,110   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,110   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,111   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,111   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,112   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,113   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,114   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,114   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,115   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,115   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,116   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,117   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,117   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,118   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,118   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,119   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2023-09-08T19:26:08,120   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,120   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,121   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,122   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,122   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,123   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,123   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,124   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,124   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,125   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,125   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,126   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,127   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,127   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,128   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,128   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,129   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,130   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,131   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,131   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,131   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,132   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,132   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,133   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,133   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,134   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,135   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,135   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,136   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,137   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,137   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,148   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2023-09-08T19:26:08,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,155   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,156   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,157   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,158   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,159   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,160   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,161   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,162   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,163   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,164   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,165   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,166   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,167   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,168   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,169   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,170   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,171   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,172   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,173   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,174   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,175   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,176   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2023-09-08T19:26:08,176   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,177   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,178   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,179   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,180   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,181   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,182   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,183   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,184   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,185   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,186   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,187   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,188   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,189   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,190   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,191   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,192   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,193   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,194   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,195   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,196   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,197   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,198   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,199   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,200   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,201   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,202   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,203   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,204   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,205   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,206 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:08,207 Getting page https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:08,208 Found index url https://www.piwheels.org/simple/
2023-09-08T19:26:08,498 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2023-09-08T19:26:08,517   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,518   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,518   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,519   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,520   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,520   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,521   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,522   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,523   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,523   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,524   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,524   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,525   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,526   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,526   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,527   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,528   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,528   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,529   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,530   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,530   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,531   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,531   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,532   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,532   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,533   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,533   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,534   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,535   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,536   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,536   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,537   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,537   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,538   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,539   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,540   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,540   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,540   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,541   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,542   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,542   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,543   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,543   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,544   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,545   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,545   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,546   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,547   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,547   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,548   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,548   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,549   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,549   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,550   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,550   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,551   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,552   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,552   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,553   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,553   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,554   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,555   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,555   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,556   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,556   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,557   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,557   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,558   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,558   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,559   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,560   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,560   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,561   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,561   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:08,562 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:08,563 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:08,585 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2023-09-08T19:26:08,603 Collecting python-libsbml==5.10.1
2023-09-08T19:26:08,605   Created temporary directory: /tmp/pip-unpack-g9vu8qkw
2023-09-08T19:26:08,764   Downloading python-libsbml-5.10.1.tar.gz (3.3 MB)
2023-09-08T19:26:11,246   Added python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz to build tracker '/tmp/pip-build-tracker-ie49g1tm'
2023-09-08T19:26:11,249   Running setup.py (path:/tmp/pip-wheel-d86u_4e8/python-libsbml_788b171267964c9c988ab8682084770e/setup.py) egg_info for package python-libsbml
2023-09-08T19:26:11,249   Created temporary directory: /tmp/pip-pip-egg-info-az5dphq6
2023-09-08T19:26:11,250   Preparing metadata (setup.py): started
2023-09-08T19:26:11,251   Running command python setup.py egg_info
2023-09-08T19:26:12,539   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T19:26:12,543   Source in /tmp/pip-wheel-d86u_4e8/python-libsbml_788b171267964c9c988ab8682084770e has version 5.10.1, which satisfies requirement python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz
2023-09-08T19:26:12,544   Removed python-libsbml==5.10.1 from https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz from build tracker '/tmp/pip-build-tracker-ie49g1tm'
2023-09-08T19:26:12,548 Created temporary directory: /tmp/pip-unpack-6ga6yev7
2023-09-08T19:26:12,549 Created temporary directory: /tmp/pip-unpack-8ss7m09f
2023-09-08T19:26:12,551 Building wheels for collected packages: python-libsbml
2023-09-08T19:26:12,555   Created temporary directory: /tmp/pip-wheel-7snfmje6
2023-09-08T19:26:12,555   Building wheel for python-libsbml (setup.py): started
2023-09-08T19:26:12,557   Destination directory: /tmp/pip-wheel-7snfmje6
2023-09-08T19:26:12,557   Running command python setup.py bdist_wheel
2023-09-08T19:26:17,372   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T19:26:17,372   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,373     569 |       register size_t l = 0;
2023-09-08T19:26:17,374         |                       ^
2023-09-08T19:26:17,374   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,375     570 |       register size_t r = iter->size - 1;
2023-09-08T19:26:17,376         |                       ^
2023-09-08T19:26:17,376   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,377     573 |         register size_t i = (l + r) >> 1;
2023-09-08T19:26:17,378         |                         ^
2023-09-08T19:26:17,378   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,379     576 |           register int compare = strcmp(name, iname);
2023-09-08T19:26:17,380         |                        ^~~~~~~
2023-09-08T19:26:17,381   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T19:26:17,381   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,382     620 |       register size_t i = 0;
2023-09-08T19:26:17,382         |                       ^
2023-09-08T19:26:17,383   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2023-09-08T19:26:17,383   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,384     639 |   register const unsigned char *u = (unsigned char *) ptr;
2023-09-08T19:26:17,384         |                                 ^
2023-09-08T19:26:17,385   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,386     640 |   register const unsigned char *eu =  u + sz;
2023-09-08T19:26:17,386         |                                 ^~
2023-09-08T19:26:17,387   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,387     642 |     register unsigned char uu = *u;
2023-09-08T19:26:17,388         |                            ^~
2023-09-08T19:26:17,388   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2023-09-08T19:26:17,389   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,390     654 |   register unsigned char *u = (unsigned char *) ptr;
2023-09-08T19:26:17,390         |                           ^
2023-09-08T19:26:17,391   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,392     655 |   register const unsigned char *eu = u + sz;
2023-09-08T19:26:17,392         |                                 ^~
2023-09-08T19:26:17,393   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,394     657 |     register char d = *(c++);
2023-09-08T19:26:17,394         |                   ^
2023-09-08T19:26:17,395   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,396     658 |     register unsigned char uu;
2023-09-08T19:26:17,397         |                            ^~
2023-09-08T19:26:17,397   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2023-09-08T19:26:17,398   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,399    1322 |       register int i;
2023-09-08T19:26:17,399         |                    ^
2023-09-08T19:26:17,400   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,400    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2023-09-08T19:26:17,401         |                         ^
2023-09-08T19:26:17,402   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:17,402    1342 |       register int i;
2023-09-08T19:26:17,403         |                    ^
2023-09-08T19:26:18,481   ./base/libsbml_wrap.cpp: At global scope:
2023-09-08T19:26:18,482   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:18,483    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2023-09-08T19:26:18,483         |                                                                 ^
2023-09-08T19:26:18,489   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2023-09-08T19:26:18,490   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:18,491    3204 |       old = std::set_unexpected(nh);
2023-09-08T19:26:18,492         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:26:18,492   In file included from /usr/include/c++/12/ios:39,
2023-09-08T19:26:18,493                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:26:18,493                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:26:18,494                    from ./base/libsbml_wrap.cpp:2956:
2023-09-08T19:26:18,495   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T19:26:18,495      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T19:26:18,496         |                      ^~~~~~~~~~~~~~
2023-09-08T19:26:18,496   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2023-09-08T19:26:18,497   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:18,497    3209 |       std::set_unexpected(old);
2023-09-08T19:26:18,498         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:26:18,499   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T19:26:18,499      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T19:26:18,500         |                      ^~~~~~~~~~~~~~
2023-09-08T19:26:19,310   In file included from ./base/libsbml.h:45,
2023-09-08T19:26:19,310                    from ./base/libsbml_wrap.cpp:3795:
2023-09-08T19:26:19,311   ./base//sbml/ListOf.h: At global scope:
2023-09-08T19:26:19,312   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:19,313      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:26:19,314         |                           ^~~~~~~~~~~~~~
2023-09-08T19:26:19,314   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:26:19,315                    from ./base/libsbml_wrap.cpp:2955:
2023-09-08T19:26:19,316   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:19,316     117 |     struct unary_function
2023-09-08T19:26:19,317         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:20,207   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:26:20,209                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:26:20,211                    from ./base/../swig/fbc-package.h:31,
2023-09-08T19:26:20,214                    from ./base/../swig/libsbml-packages.h:8,
2023-09-08T19:26:20,216                    from ./base/libsbml_wrap.cpp:3799:
2023-09-08T19:26:20,218   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,220     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:20,223         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:26:20,225   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:20,228     117 |     struct unary_function
2023-09-08T19:26:20,230         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:20,233   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,235     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:20,238         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:26:20,240   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:20,243     117 |     struct unary_function
2023-09-08T19:26:20,247         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:20,250   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:26:20,252   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,254     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:20,256         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:26:20,258   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:20,260     117 |     struct unary_function
2023-09-08T19:26:20,262         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:20,505   ./base/libsbml_wrap.cpp:4703:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,506    4703 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2023-09-08T19:26:20,507         |                                    ^~~~~~~~~~~~~~~
2023-09-08T19:26:20,507   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:20,508     131 |     struct binary_function
2023-09-08T19:26:20,508         |            ^~~~~~~~~~~~~~~
2023-09-08T19:26:20,509   ./base/libsbml_wrap.cpp:4728:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,510    4728 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2023-09-08T19:26:20,511         |                                                ^~~~~~~~~~~~~~~
2023-09-08T19:26:20,512   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:20,512     131 |     struct binary_function
2023-09-08T19:26:20,513         |            ^~~~~~~~~~~~~~~
2023-09-08T19:26:20,514   ./base/libsbml_wrap.cpp:4738:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:20,514    4738 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2023-09-08T19:26:20,515         |                                                ^~~~~~~~~~~~~~~
2023-09-08T19:26:20,516   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:20,517     131 |     struct binary_function
2023-09-08T19:26:20,517         |            ^~~~~~~~~~~~~~~
2023-09-08T19:32:22,265   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:22,266                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:22,267                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:22,267                    from ./base/sbml/AlgebraicRule.cpp:49:
2023-09-08T19:32:22,268   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:22,269      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:22,269         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:22,270   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:22,271                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:22,271                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:22,272                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:22,273                    from ./base/sbml/AlgebraicRule.cpp:34:
2023-09-08T19:32:22,274   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:22,274     117 |     struct unary_function
2023-09-08T19:32:22,275         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:26,386   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:26,387                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:26,388                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:26,388                    from ./base/sbml/AssignmentRule.cpp:49:
2023-09-08T19:32:26,389   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:26,389      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:26,390         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:26,390   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:26,391                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:26,391                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:26,392                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:26,392                    from ./base/sbml/AssignmentRule.cpp:34:
2023-09-08T19:32:26,393   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:26,393     117 |     struct unary_function
2023-09-08T19:32:26,394         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:30,464   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:30,465                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:30,465                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:30,466                    from ./base/sbml/Compartment.cpp:41:
2023-09-08T19:32:30,466   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:30,467      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:30,468         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:30,469   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:30,469                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:30,470                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:30,471                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:30,471                    from ./base/sbml/Compartment.cpp:35:
2023-09-08T19:32:30,472   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:30,473     117 |     struct unary_function
2023-09-08T19:32:30,473         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:30,765   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T19:32:30,766   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:30,767     146 |   if (&orig == NULL)
2023-09-08T19:32:30,767         |             ^
2023-09-08T19:32:30,768   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2023-09-08T19:32:30,769     143 | Compartment::Compartment(const Compartment& orig) :
2023-09-08T19:32:30,769         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:30,770   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T19:32:30,771   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:30,771     175 |   if (&rhs == NULL)
2023-09-08T19:32:30,772         |            ^
2023-09-08T19:32:30,773   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2023-09-08T19:32:30,773     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2023-09-08T19:32:30,774         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,777   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T19:32:30,778   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,779     496 |   if (&(sid) == NULL)
2023-09-08T19:32:30,780         |              ^
2023-09-08T19:32:30,780   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2023-09-08T19:32:30,781     485 | Compartment::setId (const std::string& sid)
2023-09-08T19:32:30,781         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,782   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T19:32:30,782   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:30,783     521 |   if (&(name) == NULL)
2023-09-08T19:32:30,783         |               ^
2023-09-08T19:32:30,784   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2023-09-08T19:32:30,784     516 | Compartment::setName (const std::string& name)
2023-09-08T19:32:30,785         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:30,786   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T19:32:30,786   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,787     551 |   if (&(sid) == NULL)
2023-09-08T19:32:30,787         |              ^
2023-09-08T19:32:30,788   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2023-09-08T19:32:30,788     549 | Compartment::setCompartmentType (const std::string& sid)
2023-09-08T19:32:30,789         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,789   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T19:32:30,790   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,791     673 |   if (&(sid) == NULL)
2023-09-08T19:32:30,792         |              ^
2023-09-08T19:32:30,792   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2023-09-08T19:32:30,793     671 | Compartment::setUnits (const std::string& sid)
2023-09-08T19:32:30,794         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,795   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T19:32:30,795   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,796     695 |   if (&(sid) == NULL)
2023-09-08T19:32:30,797         |              ^
2023-09-08T19:32:30,797   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2023-09-08T19:32:30,798     693 | Compartment::setOutside (const std::string& sid)
2023-09-08T19:32:30,799         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,837   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T19:32:30,837   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,838    1534 |   if (&(sid) == NULL)
2023-09-08T19:32:30,839         |              ^
2023-09-08T19:32:30,839   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2023-09-08T19:32:30,840    1530 | ListOfCompartments::get (const std::string& sid) const
2023-09-08T19:32:30,841         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,842   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T19:32:30,843   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:30,844    1562 |   if (&(sid) != NULL)
2023-09-08T19:32:30,845         |              ^
2023-09-08T19:32:30,846   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2023-09-08T19:32:30,846    1557 | ListOfCompartments::remove (const std::string& sid)
2023-09-08T19:32:30,847         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:30,851   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2023-09-08T19:32:30,851   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:30,852    1640 |   catch (SBMLConstructorException)
2023-09-08T19:32:30,852         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:30,853   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:30,854   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:30,854    1656 |   catch (SBMLConstructorException)
2023-09-08T19:32:30,855         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:31,457   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T19:32:31,458   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,458     146 |   if (&orig == NULL)
2023-09-08T19:32:31,459         |   ^~
2023-09-08T19:32:31,459   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T19:32:31,460   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,460     175 |   if (&rhs == NULL)
2023-09-08T19:32:31,461         |   ^~
2023-09-08T19:32:31,462   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T19:32:31,463   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,463     496 |   if (&(sid) == NULL)
2023-09-08T19:32:31,464         |   ^~
2023-09-08T19:32:31,465   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T19:32:31,465   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,466     521 |   if (&(name) == NULL)
2023-09-08T19:32:31,467         |   ^~
2023-09-08T19:32:31,468   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T19:32:31,468   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,469     551 |   if (&(sid) == NULL)
2023-09-08T19:32:31,470         |   ^~
2023-09-08T19:32:31,470   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T19:32:31,471   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,472     673 |   if (&(sid) == NULL)
2023-09-08T19:32:31,472         |   ^~
2023-09-08T19:32:31,473   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T19:32:31,474   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,474     695 |   if (&(sid) == NULL)
2023-09-08T19:32:31,475         |   ^~
2023-09-08T19:32:31,476   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T19:32:31,476   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,477    1534 |   if (&(sid) == NULL)
2023-09-08T19:32:31,478         |   ^~
2023-09-08T19:32:31,479   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T19:32:31,479   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:31,480    1562 |   if (&(sid) != NULL)
2023-09-08T19:32:31,480         |   ^~
2023-09-08T19:32:39,482   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:39,483                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:39,483                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:39,484                    from ./base/sbml/CompartmentType.cpp:40:
2023-09-08T19:32:39,484   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:39,485      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:39,486         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:39,486   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:39,487                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:39,487                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:39,488                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:39,488                    from ./base/sbml/CompartmentType.cpp:33:
2023-09-08T19:32:39,489   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:39,489     117 |     struct unary_function
2023-09-08T19:32:39,490         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:39,781   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T19:32:39,782   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:39,783      92 |   if (&orig == NULL)
2023-09-08T19:32:39,783         |             ^
2023-09-08T19:32:39,784   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2023-09-08T19:32:39,785      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2023-09-08T19:32:39,785         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:39,786   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T19:32:39,787   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:39,787     110 |   if (&rhs == NULL)
2023-09-08T19:32:39,788         |            ^
2023-09-08T19:32:39,789   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2023-09-08T19:32:39,789     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2023-09-08T19:32:39,790         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:39,790   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T19:32:39,791   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:39,792     207 |   if (&(sid) == NULL)
2023-09-08T19:32:39,792         |              ^
2023-09-08T19:32:39,793   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2023-09-08T19:32:39,794     196 | CompartmentType::setId (const std::string& sid)
2023-09-08T19:32:39,794         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:39,795   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T19:32:39,796   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:39,796     232 |   if (&(name) == NULL)
2023-09-08T19:32:39,797         |               ^
2023-09-08T19:32:39,798   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2023-09-08T19:32:39,798     227 | CompartmentType::setName (const std::string& name)
2023-09-08T19:32:39,799         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:39,805   ./base/sbml/CompartmentType.cpp: At global scope:
2023-09-08T19:32:39,805   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:39,806     543 | struct IdEqCT : public unary_function<SBase*, bool>
2023-09-08T19:32:39,806         |                        ^~~~~~~~~~~~~~
2023-09-08T19:32:39,807   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:39,808     117 |     struct unary_function
2023-09-08T19:32:39,808         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:39,810   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T19:32:39,810   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:39,811     568 |   if (&(sid) == NULL)
2023-09-08T19:32:39,811         |              ^
2023-09-08T19:32:39,812   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2023-09-08T19:32:39,813     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2023-09-08T19:32:39,813         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:39,815   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T19:32:39,815   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:39,816     596 |   if (&(sid) != NULL)
2023-09-08T19:32:39,817         |              ^
2023-09-08T19:32:39,817   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2023-09-08T19:32:39,818     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2023-09-08T19:32:39,818         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:39,823   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2023-09-08T19:32:39,823   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:39,824     674 |   catch (SBMLConstructorException)
2023-09-08T19:32:39,825         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:39,825   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:39,826   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:39,827     690 |   catch (SBMLConstructorException)
2023-09-08T19:32:39,827         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:40,390   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T19:32:40,391   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,391     568 |   if (&(sid) == NULL)
2023-09-08T19:32:40,392         |   ^~
2023-09-08T19:32:40,393   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T19:32:40,394   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,395      92 |   if (&orig == NULL)
2023-09-08T19:32:40,396         |   ^~
2023-09-08T19:32:40,396   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T19:32:40,397   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,398     110 |   if (&rhs == NULL)
2023-09-08T19:32:40,398         |   ^~
2023-09-08T19:32:40,399   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T19:32:40,399   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,400     207 |   if (&(sid) == NULL)
2023-09-08T19:32:40,400         |   ^~
2023-09-08T19:32:40,401   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T19:32:40,401   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,402     232 |   if (&(name) == NULL)
2023-09-08T19:32:40,402         |   ^~
2023-09-08T19:32:40,404   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T19:32:40,404   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:40,405     596 |   if (&(sid) != NULL)
2023-09-08T19:32:40,405         |   ^~
2023-09-08T19:32:45,484   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:45,485                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:45,485                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:45,486                    from ./base/sbml/Constraint.cpp:43:
2023-09-08T19:32:45,487   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:45,487      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:45,488         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:45,489   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:45,489                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:45,490                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:45,491                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:45,491                    from ./base/sbml/Constraint.cpp:33:
2023-09-08T19:32:45,492   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:45,493     117 |     struct unary_function
2023-09-08T19:32:45,494         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:45,778   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T19:32:45,779   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:45,779     101 |   if (&orig == NULL)
2023-09-08T19:32:45,780         |             ^
2023-09-08T19:32:45,781   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2023-09-08T19:32:45,781      96 | Constraint::Constraint (const Constraint& orig) :
2023-09-08T19:32:45,782         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:45,783   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T19:32:45,784   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:45,784     122 |   if (&rhs == NULL)
2023-09-08T19:32:45,785         |            ^
2023-09-08T19:32:45,786   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2023-09-08T19:32:45,787     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2023-09-08T19:32:45,787         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:45,812   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2023-09-08T19:32:45,813   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:45,814     772 |   catch (SBMLConstructorException)
2023-09-08T19:32:45,814         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:45,815   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:45,816   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:45,816     788 |   catch (SBMLConstructorException)
2023-09-08T19:32:45,817         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:46,354   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T19:32:46,354   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:46,355     101 |   if (&orig == NULL)
2023-09-08T19:32:46,356         |   ^~
2023-09-08T19:32:46,356   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T19:32:46,357   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:46,357     122 |   if (&rhs == NULL)
2023-09-08T19:32:46,358         |   ^~
2023-09-08T19:32:51,005   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:51,006                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:51,006                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:51,007                    from ./base/sbml/Delay.cpp:45:
2023-09-08T19:32:51,008   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:51,009      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:51,009         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:51,010   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:51,011                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:51,012                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:51,012                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:51,013                    from ./base/sbml/Delay.cpp:33:
2023-09-08T19:32:51,014   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:51,014     117 |     struct unary_function
2023-09-08T19:32:51,015         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:51,301   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T19:32:51,302   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:51,303     100 |   if (&orig == NULL)
2023-09-08T19:32:51,303         |             ^
2023-09-08T19:32:51,304   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2023-09-08T19:32:51,305      96 | Delay::Delay (const Delay& orig) :
2023-09-08T19:32:51,306         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:32:51,306   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T19:32:51,307   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:51,308     122 |   if (&rhs == NULL)
2023-09-08T19:32:51,309         |            ^
2023-09-08T19:32:51,310   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2023-09-08T19:32:51,310     120 | Delay& Delay::operator=(const Delay& rhs)
2023-09-08T19:32:51,311         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:32:51,325   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2023-09-08T19:32:51,326   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:51,327     648 |   catch (SBMLConstructorException)
2023-09-08T19:32:51,327         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:51,328   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:51,329   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:51,329     664 |   catch (SBMLConstructorException)
2023-09-08T19:32:51,330         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:51,822   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T19:32:51,822   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:51,823     100 |   if (&orig == NULL)
2023-09-08T19:32:51,823         |   ^~
2023-09-08T19:32:51,824   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T19:32:51,825   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:51,825     122 |   if (&rhs == NULL)
2023-09-08T19:32:51,826         |   ^~
2023-09-08T19:32:55,875   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:32:55,876                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:55,876                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:55,877                    from ./base/sbml/Event.cpp:44:
2023-09-08T19:32:55,877   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:55,878      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:55,879         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:55,880   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:55,881                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:55,882                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:55,882                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:55,883                    from ./base/sbml/Event.cpp:33:
2023-09-08T19:32:55,884   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:55,884     117 |     struct unary_function
2023-09-08T19:32:55,885         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:56,182   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T19:32:56,182   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:56,183     134 |   if (&orig == NULL)
2023-09-08T19:32:56,184         |             ^
2023-09-08T19:32:56,184   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2023-09-08T19:32:56,185     127 | Event::Event (const Event& orig) :
2023-09-08T19:32:56,186         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:32:56,189   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T19:32:56,189   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:56,190     171 |   if (&rhs == NULL)
2023-09-08T19:32:56,191         |            ^
2023-09-08T19:32:56,191   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2023-09-08T19:32:56,192     169 | Event& Event::operator=(const Event& rhs)
2023-09-08T19:32:56,193         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,211   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T19:32:56,212   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:56,213     530 |   if (&(sid) == NULL)
2023-09-08T19:32:56,214         |              ^
2023-09-08T19:32:56,214   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2023-09-08T19:32:56,215     519 | Event::setId (const std::string& sid)
2023-09-08T19:32:56,215         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,216   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T19:32:56,216   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:56,217     556 |   if (&(name) == NULL)
2023-09-08T19:32:56,217         |               ^
2023-09-08T19:32:56,218   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2023-09-08T19:32:56,218     551 | Event::setName (const std::string& name)
2023-09-08T19:32:56,219         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:56,226   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T19:32:56,227   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:56,227     704 |   if (&(sid) == NULL)
2023-09-08T19:32:56,228         |              ^
2023-09-08T19:32:56,228   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2023-09-08T19:32:56,229     702 | Event::setTimeUnits (const std::string& sid)
2023-09-08T19:32:56,229         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,238   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2023-09-08T19:32:56,239   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:56,240    1079 |   return (&variable != NULL ) ?
2023-09-08T19:32:56,240         |                     ^
2023-09-08T19:32:56,241   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2023-09-08T19:32:56,242    1077 | Event::getEventAssignment (const std::string& variable) const
2023-09-08T19:32:56,243         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:56,243   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2023-09-08T19:32:56,244   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:56,245    1091 |   return (&variable != NULL ) ?
2023-09-08T19:32:56,245         |                     ^
2023-09-08T19:32:56,246   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2023-09-08T19:32:56,247    1089 | Event::getEventAssignment (const std::string& variable)
2023-09-08T19:32:56,247         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:56,248   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2023-09-08T19:32:56,249   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:56,249    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2023-09-08T19:32:56,250         |                     ^
2023-09-08T19:32:56,250   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2023-09-08T19:32:56,251    1122 | Event::removeEventAssignment (const std::string& variable)
2023-09-08T19:32:56,252         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:56,286   ./base/sbml/Event.cpp: At global scope:
2023-09-08T19:32:56,287   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:56,287    1741 | struct IdEqE : public unary_function<SBase*, bool>
2023-09-08T19:32:56,288         |                       ^~~~~~~~~~~~~~
2023-09-08T19:32:56,289   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:56,289     117 |     struct unary_function
2023-09-08T19:32:56,290         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:56,291   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2023-09-08T19:32:56,292   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:56,292    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2023-09-08T19:32:56,293         |                ^
2023-09-08T19:32:56,293   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2023-09-08T19:32:56,294    1753 | ListOfEvents::get (const std::string& sid)
2023-09-08T19:32:56,294         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,295   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T19:32:56,296   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:56,296    1764 |   if (&sid == NULL) return NULL;
2023-09-08T19:32:56,297         |            ^
2023-09-08T19:32:56,297   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2023-09-08T19:32:56,298    1762 | ListOfEvents::get (const std::string& sid) const
2023-09-08T19:32:56,298         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,304   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T19:32:56,304   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:56,305    1787 |   if (&(sid) != NULL)
2023-09-08T19:32:56,306         |              ^
2023-09-08T19:32:56,307   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2023-09-08T19:32:56,307    1782 | ListOfEvents::remove (const std::string& sid)
2023-09-08T19:32:56,308         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:56,315   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2023-09-08T19:32:56,316   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:56,316    1866 |   catch (SBMLConstructorException)
2023-09-08T19:32:56,317         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:56,318   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:56,319   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:56,320    1882 |   catch (SBMLConstructorException)
2023-09-08T19:32:56,320         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:56,935   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T19:32:56,936   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,936    1764 |   if (&sid == NULL) return NULL;
2023-09-08T19:32:56,937         |   ^~
2023-09-08T19:32:56,940   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T19:32:56,941   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,941     171 |   if (&rhs == NULL)
2023-09-08T19:32:56,942         |   ^~
2023-09-08T19:32:56,948   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T19:32:56,949   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,949     530 |   if (&(sid) == NULL)
2023-09-08T19:32:56,950         |   ^~
2023-09-08T19:32:56,951   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T19:32:56,952   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,952     556 |   if (&(name) == NULL)
2023-09-08T19:32:56,953         |   ^~
2023-09-08T19:32:56,953   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T19:32:56,954   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,954     704 |   if (&(sid) == NULL)
2023-09-08T19:32:56,955         |   ^~
2023-09-08T19:32:56,960   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T19:32:56,960   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,961    1787 |   if (&(sid) != NULL)
2023-09-08T19:32:56,962         |   ^~
2023-09-08T19:32:56,966   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T19:32:56,966   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:56,967     134 |   if (&orig == NULL)
2023-09-08T19:32:56,967         |   ^~
2023-09-08T19:33:04,194   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:04,195                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:04,196                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:04,196                    from ./base/sbml/EventAssignment.cpp:44:
2023-09-08T19:33:04,197   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:04,198      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:04,198         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:04,199   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:04,200                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:04,201                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:04,201                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:04,202                    from ./base/sbml/EventAssignment.cpp:33:
2023-09-08T19:33:04,203   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:04,204     117 |     struct unary_function
2023-09-08T19:33:04,204         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:04,510   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T19:33:04,511   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:04,512     100 |   if (&orig == NULL)
2023-09-08T19:33:04,513         |             ^
2023-09-08T19:33:04,513   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2023-09-08T19:33:04,514      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2023-09-08T19:33:04,515         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:04,515   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T19:33:04,516   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:04,517     122 |   if (&rhs == NULL)
2023-09-08T19:33:04,517         |            ^
2023-09-08T19:33:04,518   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2023-09-08T19:33:04,519     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2023-09-08T19:33:04,520         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:04,520   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T19:33:04,521   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:04,522     219 |   if (&(sid) == NULL)
2023-09-08T19:33:04,522         |              ^
2023-09-08T19:33:04,523   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2023-09-08T19:33:04,524     217 | EventAssignment::setVariable (const std::string& sid)
2023-09-08T19:33:04,524         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:04,552   ./base/sbml/EventAssignment.cpp: At global scope:
2023-09-08T19:33:04,553   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:04,554     846 | struct IdEqEA : public unary_function<SBase*, bool>
2023-09-08T19:33:04,554         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:04,555   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:04,556     117 |     struct unary_function
2023-09-08T19:33:04,556         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:04,558   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T19:33:04,559   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:04,559     871 |   if (&(sid) == NULL)
2023-09-08T19:33:04,560         |              ^
2023-09-08T19:33:04,560   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2023-09-08T19:33:04,561     867 | ListOfEventAssignments::get (const std::string& sid) const
2023-09-08T19:33:04,562         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:04,564   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T19:33:04,565   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:04,565     899 |   if (&(sid) != NULL)
2023-09-08T19:33:04,566         |              ^
2023-09-08T19:33:04,567   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2023-09-08T19:33:04,567     894 | ListOfEventAssignments::remove (const std::string& sid)
2023-09-08T19:33:04,568         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:04,574   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2023-09-08T19:33:04,575   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:04,576     992 |   catch (SBMLConstructorException)
2023-09-08T19:33:04,576         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:04,577   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:04,578   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:04,578    1008 |   catch (SBMLConstructorException)
2023-09-08T19:33:04,579         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:05,162   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T19:33:05,163   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:05,164     871 |   if (&(sid) == NULL)
2023-09-08T19:33:05,165         |   ^~
2023-09-08T19:33:05,167   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T19:33:05,167   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:05,168     100 |   if (&orig == NULL)
2023-09-08T19:33:05,169         |   ^~
2023-09-08T19:33:05,169   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T19:33:05,170   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:05,170     122 |   if (&rhs == NULL)
2023-09-08T19:33:05,171         |   ^~
2023-09-08T19:33:05,171   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T19:33:05,172   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:05,172     219 |   if (&(sid) == NULL)
2023-09-08T19:33:05,173         |   ^~
2023-09-08T19:33:05,181   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T19:33:05,182   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:05,183     899 |   if (&(sid) != NULL)
2023-09-08T19:33:05,183         |   ^~
2023-09-08T19:33:13,277   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:13,277                    from ./base/sbml/FunctionDefinition.cpp:47:
2023-09-08T19:33:13,278   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:13,278      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:13,279         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:13,280   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:13,280                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:13,281                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:13,282                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:13,283                    from ./base/sbml/FunctionDefinition.cpp:35:
2023-09-08T19:33:13,283   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:13,284     117 |     struct unary_function
2023-09-08T19:33:13,285         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:13,638   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T19:33:13,639   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:13,640     102 |   if (&orig == NULL)
2023-09-08T19:33:13,640         |             ^
2023-09-08T19:33:13,641   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2023-09-08T19:33:13,641      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2023-09-08T19:33:13,642         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:13,643   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T19:33:13,644   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:13,645     125 |   if (&rhs == NULL)
2023-09-08T19:33:13,645         |            ^
2023-09-08T19:33:13,646   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2023-09-08T19:33:13,647     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2023-09-08T19:33:13,647         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:13,650   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T19:33:13,651   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:13,652     253 |   if (&(sid) == NULL)
2023-09-08T19:33:13,652         |              ^
2023-09-08T19:33:13,653   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2023-09-08T19:33:13,653     242 | FunctionDefinition::setId (const std::string& sid)
2023-09-08T19:33:13,654         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:13,655   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T19:33:13,655   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:33:13,656     278 |   if (&(name) == NULL)
2023-09-08T19:33:13,656         |               ^
2023-09-08T19:33:13,657   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2023-09-08T19:33:13,657     273 | FunctionDefinition::setName (const std::string& name)
2023-09-08T19:33:13,658         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:13,687   ./base/sbml/FunctionDefinition.cpp: At global scope:
2023-09-08T19:33:13,688   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:13,688     994 | struct IdEqFD : public unary_function<SBase*, bool>
2023-09-08T19:33:13,689         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:13,690   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:13,691     117 |     struct unary_function
2023-09-08T19:33:13,691         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:13,695   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T19:33:13,696   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:13,696    1019 |   if (&(sid) == NULL)
2023-09-08T19:33:13,697         |              ^
2023-09-08T19:33:13,698   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2023-09-08T19:33:13,699    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2023-09-08T19:33:13,700         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:13,702   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T19:33:13,703   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:13,704    1047 |   if (&(sid) != NULL)
2023-09-08T19:33:13,704         |              ^
2023-09-08T19:33:13,705   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2023-09-08T19:33:13,706    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2023-09-08T19:33:13,706         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:13,713   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2023-09-08T19:33:13,714   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:13,714    1124 |   catch (SBMLConstructorException)
2023-09-08T19:33:13,715         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:13,716   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:13,717   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:13,718    1140 |   catch (SBMLConstructorException)
2023-09-08T19:33:13,718         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:14,300   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T19:33:14,301   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,301    1019 |   if (&(sid) == NULL)
2023-09-08T19:33:14,302         |   ^~
2023-09-08T19:33:14,305   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T19:33:14,306   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,306     102 |   if (&orig == NULL)
2023-09-08T19:33:14,307         |   ^~
2023-09-08T19:33:14,308   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T19:33:14,308   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,309     125 |   if (&rhs == NULL)
2023-09-08T19:33:14,309         |   ^~
2023-09-08T19:33:14,312   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T19:33:14,312   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,313     253 |   if (&(sid) == NULL)
2023-09-08T19:33:14,314         |   ^~
2023-09-08T19:33:14,314   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T19:33:14,315   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,315     278 |   if (&(name) == NULL)
2023-09-08T19:33:14,316         |   ^~
2023-09-08T19:33:14,322   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T19:33:14,323   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:14,324    1047 |   if (&(sid) != NULL)
2023-09-08T19:33:14,324         |   ^~
2023-09-08T19:33:20,061   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:20,061                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:20,062                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:20,062                    from ./base/sbml/InitialAssignment.cpp:43:
2023-09-08T19:33:20,063   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:20,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:20,064         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:20,065   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:20,065                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:20,066                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:20,067                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:20,067                    from ./base/sbml/InitialAssignment.cpp:33:
2023-09-08T19:33:20,068   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:20,069     117 |     struct unary_function
2023-09-08T19:33:20,069         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:20,358   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T19:33:20,359   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:20,360      97 |   if (&orig == NULL)
2023-09-08T19:33:20,360         |             ^
2023-09-08T19:33:20,361   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2023-09-08T19:33:20,362      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2023-09-08T19:33:20,362         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:20,363   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T19:33:20,363   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:20,364     119 |   if (&rhs == NULL)
2023-09-08T19:33:20,365         |            ^
2023-09-08T19:33:20,365   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2023-09-08T19:33:20,366     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2023-09-08T19:33:20,366         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:20,367   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T19:33:20,368   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:20,368     232 |   if (&(sid) == NULL)
2023-09-08T19:33:20,369         |              ^
2023-09-08T19:33:20,369   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2023-09-08T19:33:20,370     230 | InitialAssignment::setSymbol (const std::string& sid)
2023-09-08T19:33:20,371         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:20,396   ./base/sbml/InitialAssignment.cpp: At global scope:
2023-09-08T19:33:20,397   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:20,398     843 | struct IdEqIA : public unary_function<SBase*, bool>
2023-09-08T19:33:20,399         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:20,399   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:20,400     117 |     struct unary_function
2023-09-08T19:33:20,401         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:20,402   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T19:33:20,403   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:20,403     868 |   if (&(sid) == NULL)
2023-09-08T19:33:20,404         |              ^
2023-09-08T19:33:20,405   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2023-09-08T19:33:20,405     864 | ListOfInitialAssignments::get (const std::string& sid) const
2023-09-08T19:33:20,406         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:20,407   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T19:33:20,408   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:20,408     896 |   if (&(sid) != NULL)
2023-09-08T19:33:20,409         |              ^
2023-09-08T19:33:20,410   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2023-09-08T19:33:20,411     891 | ListOfInitialAssignments::remove (const std::string& sid)
2023-09-08T19:33:20,412         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:20,415   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2023-09-08T19:33:20,416   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:20,416     989 |   catch (SBMLConstructorException)
2023-09-08T19:33:20,417         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:20,418   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:20,418   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:20,419    1005 |   catch (SBMLConstructorException)
2023-09-08T19:33:20,419         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:20,995   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T19:33:20,995   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:20,996     868 |   if (&(sid) == NULL)
2023-09-08T19:33:20,996         |   ^~
2023-09-08T19:33:20,998   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T19:33:20,999   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:20,999      97 |   if (&orig == NULL)
2023-09-08T19:33:21,000         |   ^~
2023-09-08T19:33:21,000   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T19:33:21,001   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:21,002     119 |   if (&rhs == NULL)
2023-09-08T19:33:21,002         |   ^~
2023-09-08T19:33:21,003   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T19:33:21,003   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:21,004     232 |   if (&(sid) == NULL)
2023-09-08T19:33:21,005         |   ^~
2023-09-08T19:33:21,011   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T19:33:21,012   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:21,012     896 |   if (&(sid) != NULL)
2023-09-08T19:33:21,013         |   ^~
2023-09-08T19:33:26,730   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:26,730                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:26,731                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:26,732                    from ./base/sbml/KineticLaw.cpp:45:
2023-09-08T19:33:26,732   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:26,733      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:26,734         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:26,734   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:26,735                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:26,736                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:26,737                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:26,737                    from ./base/sbml/KineticLaw.cpp:33:
2023-09-08T19:33:26,738   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:26,739     117 |     struct unary_function
2023-09-08T19:33:26,739         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:27,031   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T19:33:27,032   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:27,032     117 |   if (&orig == NULL)
2023-09-08T19:33:27,033         |             ^
2023-09-08T19:33:27,033   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2023-09-08T19:33:27,034     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2023-09-08T19:33:27,034         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:27,035   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T19:33:27,035   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:27,036     143 |   if (&rhs == NULL)
2023-09-08T19:33:27,036         |            ^
2023-09-08T19:33:27,037   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2023-09-08T19:33:27,038     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2023-09-08T19:33:27,038         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:27,051   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T19:33:27,052   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T19:33:27,052     363 |   if (&(formula) == NULL)
2023-09-08T19:33:27,053         |                  ^
2023-09-08T19:33:27,054   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2023-09-08T19:33:27,055     361 | KineticLaw::setFormula (const std::string& formula)
2023-09-08T19:33:27,055         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:33:27,056   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T19:33:27,057   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:27,058     435 |   if (&(sid) == NULL)
2023-09-08T19:33:27,058         |              ^
2023-09-08T19:33:27,059   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2023-09-08T19:33:27,060     432 | KineticLaw::setTimeUnits (const std::string& sid)
2023-09-08T19:33:27,061         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:27,061   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:27,062   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:27,063     463 |   if (&(sid) == NULL)
2023-09-08T19:33:27,064         |              ^
2023-09-08T19:33:27,064   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2023-09-08T19:33:27,065     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2023-09-08T19:33:27,065         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:27,077   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2023-09-08T19:33:27,078   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:27,078    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2023-09-08T19:33:27,079         |                ^
2023-09-08T19:33:27,080   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2023-09-08T19:33:27,081    1032 | KineticLaw::removeParameter (const std::string& sid)
2023-09-08T19:33:27,081         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:27,082   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2023-09-08T19:33:27,083   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:27,083    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2023-09-08T19:33:27,084         |                ^
2023-09-08T19:33:27,084   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2023-09-08T19:33:27,085    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2023-09-08T19:33:27,086         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:27,111   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2023-09-08T19:33:27,112   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:27,113    1611 |   catch (SBMLConstructorException)
2023-09-08T19:33:27,113         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:27,114   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:27,114   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:27,115    1627 |   catch (SBMLConstructorException)
2023-09-08T19:33:27,116         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:27,654   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T19:33:27,654   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:27,655     363 |   if (&(formula) == NULL)
2023-09-08T19:33:27,656         |   ^~
2023-09-08T19:33:27,660   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T19:33:27,661   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:27,662     143 |   if (&rhs == NULL)
2023-09-08T19:33:27,663         |   ^~
2023-09-08T19:33:27,666   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T19:33:27,667   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:27,667     435 |   if (&(sid) == NULL)
2023-09-08T19:33:27,668         |   ^~
2023-09-08T19:33:27,669   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:27,670   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:27,670     463 |   if (&(sid) == NULL)
2023-09-08T19:33:27,671         |   ^~
2023-09-08T19:33:27,675   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T19:33:27,675   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:27,676     117 |   if (&orig == NULL)
2023-09-08T19:33:27,677         |   ^~
2023-09-08T19:33:33,445   In file included from ./base/sbml/ListOf.cpp:37:
2023-09-08T19:33:33,446   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,446      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:33,447         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:33,448   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:33:33,449                    from ./base/sbml/ListOf.cpp:34:
2023-09-08T19:33:33,449   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,450     117 |     struct unary_function
2023-09-08T19:33:33,451         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:33,660   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,661      76 | struct Delete : public unary_function<SBase*, void>
2023-09-08T19:33:33,662         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:33,662   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,663     117 |     struct unary_function
2023-09-08T19:33:33,663         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:33,665   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,665      94 | struct Clone : public unary_function<SBase*, SBase*>
2023-09-08T19:33:33,666         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:33,666   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,667     117 |     struct unary_function
2023-09-08T19:33:33,668         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:33,688   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,688     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2023-09-08T19:33:33,689         |                                 ^~~~~~~~~~~~~~
2023-09-08T19:33:33,690   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,690     117 |     struct unary_function
2023-09-08T19:33:33,691         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:33,692   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,693     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2023-09-08T19:33:33,694         |                                     ^~~~~~~~~~~~~~
2023-09-08T19:33:33,695   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,696     117 |     struct unary_function
2023-09-08T19:33:33,697         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:33,698   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:33,699     537 | struct Write : public unary_function<SBase*, void>
2023-09-08T19:33:33,700         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:33,700   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:33,701     117 |     struct unary_function
2023-09-08T19:33:33,702         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:38,696   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:38,697                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:38,698                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:38,698                    from ./base/sbml/LocalParameter.cpp:42:
2023-09-08T19:33:38,699   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:38,700      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:38,700         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:38,701   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:38,702                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:38,702                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:38,703                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:38,704                    from ./base/sbml/LocalParameter.cpp:35:
2023-09-08T19:33:38,705   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:38,705     117 |     struct unary_function
2023-09-08T19:33:38,706         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:38,991   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T19:33:38,991   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:38,992     103 |   if (&orig == NULL)
2023-09-08T19:33:38,993         |             ^
2023-09-08T19:33:38,993   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2023-09-08T19:33:38,994     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2023-09-08T19:33:38,994         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:38,995   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T19:33:38,996   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:38,996     116 |   if (&orig == NULL)
2023-09-08T19:33:38,997         |             ^
2023-09-08T19:33:38,997   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2023-09-08T19:33:38,998     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2023-09-08T19:33:38,999         |                                ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:38,999   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T19:33:39,000   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:39,001     126 |   if (&rhs == NULL)
2023-09-08T19:33:39,001         |            ^
2023-09-08T19:33:39,002   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2023-09-08T19:33:39,003     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2023-09-08T19:33:39,003         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:39,005   ./base/sbml/LocalParameter.cpp: At global scope:
2023-09-08T19:33:39,005   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:39,006     386 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T19:33:39,007         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:39,008   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:39,009     117 |     struct unary_function
2023-09-08T19:33:39,009         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:39,010   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T19:33:39,011   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:39,012     411 |   if (&(sid) == NULL)
2023-09-08T19:33:39,012         |              ^
2023-09-08T19:33:39,013   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2023-09-08T19:33:39,014     407 | ListOfLocalParameters::get (const std::string& sid) const
2023-09-08T19:33:39,014         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:39,016   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T19:33:39,017   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:39,017     453 |   if (&(sid) != NULL)
2023-09-08T19:33:39,018         |              ^
2023-09-08T19:33:39,019   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2023-09-08T19:33:39,020     448 | ListOfLocalParameters::remove (const std::string& sid)
2023-09-08T19:33:39,020         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:39,024   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2023-09-08T19:33:39,025   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:39,026     533 |   catch (SBMLConstructorException)
2023-09-08T19:33:39,026         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:39,027   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:39,027   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:39,028     549 |   catch (SBMLConstructorException)
2023-09-08T19:33:39,028         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:39,587   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T19:33:39,587   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:39,588     411 |   if (&(sid) == NULL)
2023-09-08T19:33:39,588         |   ^~
2023-09-08T19:33:39,590   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T19:33:39,590   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:39,591     103 |   if (&orig == NULL)
2023-09-08T19:33:39,591         |   ^~
2023-09-08T19:33:39,592   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T19:33:39,593   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:39,593     116 |   if (&orig == NULL)
2023-09-08T19:33:39,594         |   ^~
2023-09-08T19:33:39,595   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T19:33:39,596   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:39,596     126 |   if (&rhs == NULL)
2023-09-08T19:33:39,597         |   ^~
2023-09-08T19:33:39,598   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T19:33:39,599   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:39,599     453 |   if (&(sid) != NULL)
2023-09-08T19:33:39,600         |   ^~
2023-09-08T19:33:44,035   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:33:44,036                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:44,037                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:44,037                    from ./base/sbml/Model.cpp:41:
2023-09-08T19:33:44,038   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:44,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:44,039         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:44,040   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:44,041                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:44,041                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:44,042                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:44,043                    from ./base/sbml/Model.cpp:33:
2023-09-08T19:33:44,044   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:44,045     117 |     struct unary_function
2023-09-08T19:33:44,046         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:44,415   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T19:33:44,416   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:44,416     175 |   if (&orig == NULL)
2023-09-08T19:33:44,417         |             ^
2023-09-08T19:33:44,417   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2023-09-08T19:33:44,418     160 | Model::Model(const Model& orig) :
2023-09-08T19:33:44,418         |              ~~~~~~~~~~~~~^~~~
2023-09-08T19:33:44,420   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T19:33:44,421   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:44,421     216 |   if (&rhs == NULL)
2023-09-08T19:33:44,422         |            ^
2023-09-08T19:33:44,422   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2023-09-08T19:33:44,423     214 | Model& Model::operator=(const Model& rhs)
2023-09-08T19:33:44,423         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:33:44,474   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T19:33:44,475   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:44,476     718 |   if (&(sid) == NULL)
2023-09-08T19:33:44,476         |              ^
2023-09-08T19:33:44,477   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2023-09-08T19:33:44,477     707 | Model::setId (const std::string& sid)
2023-09-08T19:33:44,478         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:44,479   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T19:33:44,480   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:33:44,480     743 |   if (&(name) == NULL)
2023-09-08T19:33:44,481         |               ^
2023-09-08T19:33:44,482   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2023-09-08T19:33:44,482     738 | Model::setName (const std::string& name)
2023-09-08T19:33:44,483         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:44,484   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:44,485   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,486     773 |   if (&(units) == NULL)
2023-09-08T19:33:44,486         |                ^
2023-09-08T19:33:44,487   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2023-09-08T19:33:44,488     771 | Model::setSubstanceUnits (const std::string& units)
2023-09-08T19:33:44,488         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,489   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T19:33:44,489   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,490     799 |   if (&(units) == NULL)
2023-09-08T19:33:44,491         |                ^
2023-09-08T19:33:44,491   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2023-09-08T19:33:44,492     797 | Model::setTimeUnits (const std::string& units)
2023-09-08T19:33:44,493         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,494   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T19:33:44,494   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,495     825 |   if (&(units) == NULL)
2023-09-08T19:33:44,496         |                ^
2023-09-08T19:33:44,497   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2023-09-08T19:33:44,497     823 | Model::setVolumeUnits (const std::string& units)
2023-09-08T19:33:44,498         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,498   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T19:33:44,499   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,499     851 |   if (&(units) == NULL)
2023-09-08T19:33:44,500         |                ^
2023-09-08T19:33:44,500   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2023-09-08T19:33:44,501     849 | Model::setAreaUnits (const std::string& units)
2023-09-08T19:33:44,501         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,502   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T19:33:44,503   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,503     877 |   if (&(units) == NULL)
2023-09-08T19:33:44,504         |                ^
2023-09-08T19:33:44,504   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2023-09-08T19:33:44,505     875 | Model::setLengthUnits (const std::string& units)
2023-09-08T19:33:44,505         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,506   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T19:33:44,507   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:44,507     903 |   if (&(units) == NULL)
2023-09-08T19:33:44,508         |                ^
2023-09-08T19:33:44,509   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2023-09-08T19:33:44,509     901 | Model::setExtentUnits (const std::string& units)
2023-09-08T19:33:44,510         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:44,511   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T19:33:44,512   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T19:33:44,512     929 |   if (&(id) == NULL)
2023-09-08T19:33:44,513         |             ^
2023-09-08T19:33:44,514   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2023-09-08T19:33:44,515     927 | Model::setConversionFactor (const std::string& id)
2023-09-08T19:33:44,516         |                             ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T19:33:44,716   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2023-09-08T19:33:44,716   ./base/sbml/Model.cpp:6000:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:44,717    6000 |   catch (SBMLConstructorException)
2023-09-08T19:33:44,718         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:44,719   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:44,720   ./base/sbml/Model.cpp:6016:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:44,720    6016 |   catch (SBMLConstructorException)
2023-09-08T19:33:44,721         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:45,520   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T19:33:45,521   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,522     216 |   if (&rhs == NULL)
2023-09-08T19:33:45,523         |   ^~
2023-09-08T19:33:45,534   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T19:33:45,535   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,536     718 |   if (&(sid) == NULL)
2023-09-08T19:33:45,536         |   ^~
2023-09-08T19:33:45,537   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T19:33:45,538   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,538     743 |   if (&(name) == NULL)
2023-09-08T19:33:45,539         |   ^~
2023-09-08T19:33:45,539   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:45,540   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,540     773 |   if (&(units) == NULL)
2023-09-08T19:33:45,541         |   ^~
2023-09-08T19:33:45,542   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T19:33:45,542   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,543     799 |   if (&(units) == NULL)
2023-09-08T19:33:45,543         |   ^~
2023-09-08T19:33:45,544   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T19:33:45,545   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,546     825 |   if (&(units) == NULL)
2023-09-08T19:33:45,546         |   ^~
2023-09-08T19:33:45,547   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T19:33:45,547   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,548     851 |   if (&(units) == NULL)
2023-09-08T19:33:45,549         |   ^~
2023-09-08T19:33:45,550   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T19:33:45,551   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,551     877 |   if (&(units) == NULL)
2023-09-08T19:33:45,552         |   ^~
2023-09-08T19:33:45,553   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T19:33:45,554   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,554     903 |   if (&(units) == NULL)
2023-09-08T19:33:45,555         |   ^~
2023-09-08T19:33:45,556   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T19:33:45,557   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,558     929 |   if (&(id) == NULL)
2023-09-08T19:33:45,558         |   ^~
2023-09-08T19:33:45,582   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T19:33:45,584   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:45,585     175 |   if (&orig == NULL)
2023-09-08T19:33:45,586         |   ^~
2023-09-08T19:33:51,384   ./base/sbml/Model.cpp: In member function ‘void Model::populateListFormulaUnitsData()’:
2023-09-08T19:33:51,385   ./base/sbml/Model.cpp:5681:29: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
2023-09-08T19:33:51,385    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:51,386         |                             ^~
2023-09-08T19:33:51,387   ./base/sbml/Model.cpp:5681:22: note: directive argument in the range [0, 4294967294]
2023-09-08T19:33:51,388    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:51,389         |                      ^~~~~~~~~~
2023-09-08T19:33:51,390   ./base/sbml/Model.cpp:5681:14: note: ‘sprintf’ output between 8 and 17 bytes into a destination of size 12
2023-09-08T19:33:51,390    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:51,390         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:01,546   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:01,546                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:01,546                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:01,547                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2023-09-08T19:34:01,547   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:01,548      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:01,548         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:01,549   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:01,550                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:01,550                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:01,551                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:01,551                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2023-09-08T19:34:01,552   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:01,552     117 |     struct unary_function
2023-09-08T19:34:01,553         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:05,689   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:05,690                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:05,691                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:05,691                    from ./base/sbml/Parameter.cpp:42:
2023-09-08T19:34:05,692   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:05,693      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:05,694         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:05,695   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:05,695                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:05,696                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:05,697                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:05,697                    from ./base/sbml/Parameter.cpp:35:
2023-09-08T19:34:05,698   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:05,699     117 |     struct unary_function
2023-09-08T19:34:05,700         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:05,990   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T19:34:05,991   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:05,992     131 |   if (&orig == NULL)
2023-09-08T19:34:05,992         |             ^
2023-09-08T19:34:05,993   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2023-09-08T19:34:05,994     128 | Parameter::Parameter(const Parameter& orig) :
2023-09-08T19:34:05,994         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:05,995   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T19:34:05,996   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:05,997     155 |   if (&rhs == NULL)
2023-09-08T19:34:05,997         |            ^
2023-09-08T19:34:05,998   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2023-09-08T19:34:05,999     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2023-09-08T19:34:06,000         |                                 ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:06,001   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T19:34:06,001   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:06,002     342 |   if (&(sid) == NULL)
2023-09-08T19:34:06,002         |              ^
2023-09-08T19:34:06,003   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2023-09-08T19:34:06,004     331 | Parameter::setId (const std::string& sid)
2023-09-08T19:34:06,004         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:06,005   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T19:34:06,005   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:34:06,006     367 |   if (&(name) == NULL)
2023-09-08T19:34:06,006         |               ^
2023-09-08T19:34:06,007   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2023-09-08T19:34:06,008     362 | Parameter::setName (const std::string& name)
2023-09-08T19:34:06,008         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:06,009   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T19:34:06,009   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:34:06,010     409 |   if (&(units) == NULL)
2023-09-08T19:34:06,010         |                ^
2023-09-08T19:34:06,011   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2023-09-08T19:34:06,012     407 | Parameter::setUnits (const std::string& units)
2023-09-08T19:34:06,013         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:34:06,068   ./base/sbml/Parameter.cpp: At global scope:
2023-09-08T19:34:06,069   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:06,070    1523 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T19:34:06,071         |                       ^~~~~~~~~~~~~~
2023-09-08T19:34:06,071   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:06,072     117 |     struct unary_function
2023-09-08T19:34:06,073         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:06,074   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T19:34:06,074   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:06,075    1546 |   if (&(sid) == NULL)
2023-09-08T19:34:06,076         |              ^
2023-09-08T19:34:06,077   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2023-09-08T19:34:06,078    1542 | ListOfParameters::get (const std::string& sid) const
2023-09-08T19:34:06,078         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:06,079   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T19:34:06,080   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:06,080    1573 |   if (&(sid) != NULL)
2023-09-08T19:34:06,081         |              ^
2023-09-08T19:34:06,082   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2023-09-08T19:34:06,083    1568 | ListOfParameters::remove (const std::string& sid)
2023-09-08T19:34:06,083         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:06,086   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2023-09-08T19:34:06,087   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:06,088    1653 |   catch (SBMLConstructorException)
2023-09-08T19:34:06,089         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:06,089   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:06,090   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:06,090    1669 |   catch (SBMLConstructorException)
2023-09-08T19:34:06,091         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:06,688   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T19:34:06,689   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,689    1546 |   if (&(sid) == NULL)
2023-09-08T19:34:06,690         |   ^~
2023-09-08T19:34:06,692   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T19:34:06,692   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,693     131 |   if (&orig == NULL)
2023-09-08T19:34:06,693         |   ^~
2023-09-08T19:34:06,694   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T19:34:06,694   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,695     155 |   if (&rhs == NULL)
2023-09-08T19:34:06,696         |   ^~
2023-09-08T19:34:06,696   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T19:34:06,697   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,698     342 |   if (&(sid) == NULL)
2023-09-08T19:34:06,699         |   ^~
2023-09-08T19:34:06,699   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T19:34:06,700   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,701     367 |   if (&(name) == NULL)
2023-09-08T19:34:06,701         |   ^~
2023-09-08T19:34:06,702   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T19:34:06,703   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,704     409 |   if (&(units) == NULL)
2023-09-08T19:34:06,704         |   ^~
2023-09-08T19:34:06,713   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T19:34:06,714   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:06,715    1573 |   if (&(sid) != NULL)
2023-09-08T19:34:06,715         |   ^~
2023-09-08T19:34:15,188   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:15,189                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:15,190                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:15,190                    from ./base/sbml/Priority.cpp:45:
2023-09-08T19:34:15,191   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:15,192      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:15,192         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:15,193   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:15,194                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:15,194                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:15,195                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:15,196                    from ./base/sbml/Priority.cpp:33:
2023-09-08T19:34:15,196   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:15,197     117 |     struct unary_function
2023-09-08T19:34:15,197         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:15,488   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T19:34:15,488   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:15,489     100 |   if (&orig == NULL)
2023-09-08T19:34:15,489         |             ^
2023-09-08T19:34:15,490   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2023-09-08T19:34:15,490      96 | Priority::Priority (const Priority& orig) :
2023-09-08T19:34:15,491         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:15,491   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T19:34:15,492   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:15,493     122 |   if (&rhs == NULL)
2023-09-08T19:34:15,493         |            ^
2023-09-08T19:34:15,494   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2023-09-08T19:34:15,494     120 | Priority& Priority::operator=(const Priority& rhs)
2023-09-08T19:34:15,495         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:15,509   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2023-09-08T19:34:15,510   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:15,510     503 |   catch (SBMLConstructorException)
2023-09-08T19:34:15,511         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:15,512   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:15,512   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:15,513     519 |   catch (SBMLConstructorException)
2023-09-08T19:34:15,514         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:16,002   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T19:34:16,003   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:16,004     100 |   if (&orig == NULL)
2023-09-08T19:34:16,004         |   ^~
2023-09-08T19:34:16,005   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T19:34:16,006   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:16,006     122 |   if (&rhs == NULL)
2023-09-08T19:34:16,007         |   ^~
2023-09-08T19:34:19,886   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:19,886                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:19,887                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:19,887                    from ./base/sbml/RateRule.cpp:49:
2023-09-08T19:34:19,888   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:19,889      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:19,889         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:19,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:19,891                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:19,892                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:19,893                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:19,893                    from ./base/sbml/RateRule.cpp:34:
2023-09-08T19:34:19,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:19,894     117 |     struct unary_function
2023-09-08T19:34:19,894         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:23,838   In file included from ./base//sbml/SpeciesReference.h:261,
2023-09-08T19:34:23,839                    from ./base/sbml/Reaction.cpp:40:
2023-09-08T19:34:23,840   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:23,840      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:23,841         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:23,841   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:23,842                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:23,842                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:23,843                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:23,844                    from ./base/sbml/Reaction.cpp:33:
2023-09-08T19:34:23,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:23,845     117 |     struct unary_function
2023-09-08T19:34:23,845         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:24,286   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T19:34:24,287   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:24,288     185 |   if (&orig == NULL)
2023-09-08T19:34:24,288         |             ^
2023-09-08T19:34:24,289   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2023-09-08T19:34:24,290     178 | Reaction::Reaction (const Reaction& orig) :
2023-09-08T19:34:24,291         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:24,292   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T19:34:24,293   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:24,294     215 |   if (&rhs == NULL)
2023-09-08T19:34:24,294         |            ^
2023-09-08T19:34:24,295   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2023-09-08T19:34:24,296     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2023-09-08T19:34:24,297         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:24,314   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T19:34:24,314   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:24,315     549 |   if (&(sid) == NULL)
2023-09-08T19:34:24,316         |              ^
2023-09-08T19:34:24,317   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2023-09-08T19:34:24,317     538 | Reaction::setId (const std::string& sid)
2023-09-08T19:34:24,318         |                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:24,319   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T19:34:24,319   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:34:24,320     574 |   if (&(name) == NULL)
2023-09-08T19:34:24,321         |               ^
2023-09-08T19:34:24,321   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2023-09-08T19:34:24,322     569 | Reaction::setName (const std::string& name)
2023-09-08T19:34:24,323         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:24,325   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T19:34:24,326   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:24,327     665 |   if (&(sid) == NULL)
2023-09-08T19:34:24,327         |              ^
2023-09-08T19:34:24,328   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2023-09-08T19:34:24,328     663 | Reaction::setCompartment (const std::string& sid)
2023-09-08T19:34:24,329         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:24,386   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T19:34:24,387   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:24,387    1900 |   if (&(sid) == NULL)
2023-09-08T19:34:24,388         |              ^
2023-09-08T19:34:24,388   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2023-09-08T19:34:24,389    1896 | ListOfReactions::get (const std::string& sid) const
2023-09-08T19:34:24,389         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:24,393   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T19:34:24,394   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:24,395    1927 |   if (&(sid) != NULL)
2023-09-08T19:34:24,395         |              ^
2023-09-08T19:34:24,396   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2023-09-08T19:34:24,396    1922 | ListOfReactions::remove (const std::string& sid)
2023-09-08T19:34:24,397         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:24,404   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2023-09-08T19:34:24,405   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:24,405    2005 |   catch (SBMLConstructorException)
2023-09-08T19:34:24,406         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:24,407   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:24,408   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:24,408    2021 |   catch (SBMLConstructorException)
2023-09-08T19:34:24,409         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:25,037   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T19:34:25,037   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,038     215 |   if (&rhs == NULL)
2023-09-08T19:34:25,039         |   ^~
2023-09-08T19:34:25,045   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T19:34:25,045   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,046     549 |   if (&(sid) == NULL)
2023-09-08T19:34:25,047         |   ^~
2023-09-08T19:34:25,047   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T19:34:25,048   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,049     574 |   if (&(name) == NULL)
2023-09-08T19:34:25,049         |   ^~
2023-09-08T19:34:25,050   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T19:34:25,051   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,052     665 |   if (&(sid) == NULL)
2023-09-08T19:34:25,053         |   ^~
2023-09-08T19:34:25,054   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T19:34:25,055   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,055    1900 |   if (&(sid) == NULL)
2023-09-08T19:34:25,056         |   ^~
2023-09-08T19:34:25,063   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T19:34:25,064   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,064    1927 |   if (&(sid) != NULL)
2023-09-08T19:34:25,065         |   ^~
2023-09-08T19:34:25,070   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T19:34:25,071   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:25,071     185 |   if (&orig == NULL)
2023-09-08T19:34:25,072         |   ^~
2023-09-08T19:34:32,752   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:32,752                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:32,753                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:32,754                    from ./base/sbml/Rule.cpp:49:
2023-09-08T19:34:32,754   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:32,755      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:32,755         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:32,756   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:32,756                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:32,757                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:32,757                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:32,758                    from ./base/sbml/Rule.cpp:34:
2023-09-08T19:34:32,759   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:32,760     117 |     struct unary_function
2023-09-08T19:34:32,760         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:33,053   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T19:34:33,054   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:33,055     110 |   if (&orig == NULL)
2023-09-08T19:34:33,056         |             ^
2023-09-08T19:34:33,056   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2023-09-08T19:34:33,057     106 | Rule::Rule (const Rule& orig) :
2023-09-08T19:34:33,058         |             ~~~~~~~~~~~~^~~~
2023-09-08T19:34:33,059   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T19:34:33,060   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:33,061     137 |   if (&rhs == NULL)
2023-09-08T19:34:33,061         |            ^
2023-09-08T19:34:33,062   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2023-09-08T19:34:33,063     135 | Rule& Rule::operator=(const Rule& rhs)
2023-09-08T19:34:33,063         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:34:33,072   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T19:34:33,073   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T19:34:33,073     326 |   if (&(formula) == NULL)
2023-09-08T19:34:33,074         |                  ^
2023-09-08T19:34:33,075   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2023-09-08T19:34:33,076     324 | Rule::setFormula (const std::string& formula)
2023-09-08T19:34:33,076         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:34:33,080   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T19:34:33,080   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:33,081     400 |   if (&(sid) == NULL)
2023-09-08T19:34:33,081         |              ^
2023-09-08T19:34:33,082   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2023-09-08T19:34:33,082     398 | Rule::setVariable (const std::string& sid)
2023-09-08T19:34:33,083         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:33,083   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T19:34:33,084   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2023-09-08T19:34:33,085     428 |   if (&(sname) == NULL)
2023-09-08T19:34:33,085         |                ^
2023-09-08T19:34:33,086   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2023-09-08T19:34:33,086     425 | Rule::setUnits (const std::string& sname)
2023-09-08T19:34:33,087         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:34:33,139   ./base/sbml/Rule.cpp: At global scope:
2023-09-08T19:34:33,140   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:33,141    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2023-09-08T19:34:33,141         |                          ^~~~~~~~~~~~~~
2023-09-08T19:34:33,142   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:33,143     117 |     struct unary_function
2023-09-08T19:34:33,143         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:33,144   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T19:34:33,145   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:33,146    1442 |   if (&(sid) == NULL)
2023-09-08T19:34:33,147         |              ^
2023-09-08T19:34:33,147   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2023-09-08T19:34:33,148    1438 | ListOfRules::get (const std::string& sid) const
2023-09-08T19:34:33,149         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:33,150   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T19:34:33,151   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:33,152    1483 |   if (&(sid) != NULL)
2023-09-08T19:34:33,152         |              ^
2023-09-08T19:34:33,153   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2023-09-08T19:34:33,154    1478 | ListOfRules::remove (const std::string& sid)
2023-09-08T19:34:33,155         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:33,169   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2023-09-08T19:34:33,170   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,171    1672 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,171         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,172   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:33,173   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,174    1688 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,174         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,175   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2023-09-08T19:34:33,176   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,177    1704 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,177         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,178   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:33,178   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,179    1720 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,180         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,180   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2023-09-08T19:34:33,181   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,181    1736 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,182         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,182   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:33,183   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:33,184    1752 |   catch (SBMLConstructorException)
2023-09-08T19:34:33,184         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:33,774   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T19:34:33,775   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,775     326 |   if (&(formula) == NULL)
2023-09-08T19:34:33,776         |   ^~
2023-09-08T19:34:33,782   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T19:34:33,783   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,784    1442 |   if (&(sid) == NULL)
2023-09-08T19:34:33,785         |   ^~
2023-09-08T19:34:33,787   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T19:34:33,788   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,789     110 |   if (&orig == NULL)
2023-09-08T19:34:33,790         |   ^~
2023-09-08T19:34:33,790   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T19:34:33,791   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,792     137 |   if (&rhs == NULL)
2023-09-08T19:34:33,793         |   ^~
2023-09-08T19:34:33,793   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T19:34:33,794   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,795     400 |   if (&(sid) == NULL)
2023-09-08T19:34:33,796         |   ^~
2023-09-08T19:34:33,796   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T19:34:33,797   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,797     428 |   if (&(sname) == NULL)
2023-09-08T19:34:33,798         |   ^~
2023-09-08T19:34:33,804   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T19:34:33,805   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:33,806    1483 |   if (&(sid) != NULL)
2023-09-08T19:34:33,807         |   ^~
2023-09-08T19:34:44,466   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:44,467                    from ./base//sbml/Model.h:426,
2023-09-08T19:34:44,468                    from ./base/sbml/SBMLConvert.cpp:37:
2023-09-08T19:34:44,469   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:44,469      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:44,470         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:44,470   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:44,471                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:34:44,471                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:34:44,472                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:34:44,472                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:34:44,473                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:34:44,473                    from ./base/sbml/SBMLConvert.cpp:34:
2023-09-08T19:34:44,474   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:44,475     117 |     struct unary_function
2023-09-08T19:34:44,475         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:44,718   ./base/sbml/SBMLConvert.cpp: In member function ‘void Model::addDefinitionsForDefaultUnits()’:
2023-09-08T19:34:44,719   ./base/sbml/SBMLConvert.cpp:416:8: warning: variable ‘implicitArea’ set but not used [-Wunused-but-set-variable]
2023-09-08T19:34:44,720     416 |   bool implicitArea = false;
2023-09-08T19:34:44,720         |        ^~~~~~~~~~~~
2023-09-08T19:34:52,713   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:34:52,714                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:52,714                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:52,715                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:34:52,715                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:34:52,716                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2023-09-08T19:34:52,717                    from ./base/sbml/SBMLDocument.cpp:44:
2023-09-08T19:34:52,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:52,718      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:52,719         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:52,719   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:52,720                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:34:52,721                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:34:52,722                    from /usr/include/c++/12/ios:42,
2023-09-08T19:34:52,722                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:34:52,723                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:34:52,723                    from ./base/sbml/SBMLDocument.cpp:35:
2023-09-08T19:34:52,724   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:52,724     117 |     struct unary_function
2023-09-08T19:34:52,725         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:53,154   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T19:34:53,154   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:53,155     261 |   if (&orig == NULL)
2023-09-08T19:34:53,156         |             ^
2023-09-08T19:34:53,156   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2023-09-08T19:34:53,157     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2023-09-08T19:34:53,158         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:53,161   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T19:34:53,162   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:53,162     302 |   if (&rhs == NULL)
2023-09-08T19:34:53,162         |            ^
2023-09-08T19:34:53,163   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2023-09-08T19:34:53,164     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2023-09-08T19:34:53,164         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:53,314   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2023-09-08T19:34:53,315   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:53,316    1868 |   catch (SBMLConstructorException)
2023-09-08T19:34:53,316         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:53,317   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2023-09-08T19:34:53,318   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:53,318    1884 |   catch (SBMLConstructorException)
2023-09-08T19:34:53,319         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:53,320   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2023-09-08T19:34:53,321   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:53,321    1900 |   catch (SBMLConstructorException)
2023-09-08T19:34:53,322         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:54,124   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T19:34:54,125   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:54,125     302 |   if (&rhs == NULL)
2023-09-08T19:34:54,126         |   ^~
2023-09-08T19:34:54,157   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T19:34:54,158   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:54,159     261 |   if (&orig == NULL)
2023-09-08T19:34:54,160         |   ^~
2023-09-08T19:35:03,226   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:03,226                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:03,227                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:03,228                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:03,228                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:03,229                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:35:03,230                    from ./base/sbml/SBMLError.cpp:41:
2023-09-08T19:35:03,230   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:03,231      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:03,231         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:03,232   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:03,233                    from ./base/sbml/SBMLError.cpp:33:
2023-09-08T19:35:03,234   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:03,234     117 |     struct unary_function
2023-09-08T19:35:03,235         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:08,009   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:08,010      86 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T19:35:08,010         |                        ^~~~~~~~~~~~~~
2023-09-08T19:35:08,011   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:35:08,011                    from ./base/sbml/SBMLErrorLog.cpp:34:
2023-09-08T19:35:08,012   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:08,012     117 |     struct unary_function
2023-09-08T19:35:08,013         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:11,841   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:11,842                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:11,843                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:11,843                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:11,844                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:11,844                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:35:11,845                    from ./base/sbml/SBMLNamespaces.cpp:35:
2023-09-08T19:35:11,846   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:11,846      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:11,847         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:11,847   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:11,848                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:35:11,849                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:35:11,849                    from ./base/sbml/SBMLNamespaces.cpp:34:
2023-09-08T19:35:11,850   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:11,851     117 |     struct unary_function
2023-09-08T19:35:11,851         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:12,208   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T19:35:12,209   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:35:12,210     175 |   if (&orig == NULL)
2023-09-08T19:35:12,211         |             ^
2023-09-08T19:35:12,211   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2023-09-08T19:35:12,212     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2023-09-08T19:35:12,213         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:35:12,214   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T19:35:12,214   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:35:12,215     225 |   if (&rhs == NULL)
2023-09-08T19:35:12,216         |            ^
2023-09-08T19:35:12,216   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2023-09-08T19:35:12,217     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2023-09-08T19:35:12,218         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:35:12,781   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T19:35:12,782   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:12,783     175 |   if (&orig == NULL)
2023-09-08T19:35:12,784         |   ^~
2023-09-08T19:35:12,784   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T19:35:12,785   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:12,786     225 |   if (&rhs == NULL)
2023-09-08T19:35:12,787         |   ^~
2023-09-08T19:35:17,836   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:17,836                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:17,837                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:17,837                    from ./base/sbml/SBMLReader.cpp:39:
2023-09-08T19:35:17,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:17,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:17,839         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:17,839   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:17,840                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:17,840                    from ./base/sbml/SBMLReader.cpp:33:
2023-09-08T19:35:17,841   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:17,842     117 |     struct unary_function
2023-09-08T19:35:17,842         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:18,132   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2023-09-08T19:35:18,132   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2023-09-08T19:35:18,133     139 |   if (&xml == NULL) return NULL;
2023-09-08T19:35:18,133         |            ^
2023-09-08T19:35:18,134   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2023-09-08T19:35:18,135     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2023-09-08T19:35:18,135         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:35:18,655   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:18,656     139 |   if (&xml == NULL) return NULL;
2023-09-08T19:35:18,656         |   ^~
2023-09-08T19:35:22,556   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:22,557                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:22,557                    from ./base/sbml/SBMLTransforms.cpp:33:
2023-09-08T19:35:22,558   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:22,559      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:22,559         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:22,560   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:22,561                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:35:22,561                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:35:22,562                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:35:22,563                    from ./base//sbml/SBase.h:146,
2023-09-08T19:35:22,563                    from ./base//sbml/SBMLTransforms.h:45:
2023-09-08T19:35:22,564   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:22,565     117 |     struct unary_function
2023-09-08T19:35:22,565         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:31,427   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:31,428                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:31,428                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:31,429                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:31,430                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:31,431                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2023-09-08T19:35:31,431   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:31,432      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:31,433         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:31,434   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:31,434                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:31,435                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:35:31,435                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:35:31,436   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:31,436     117 |     struct unary_function
2023-09-08T19:35:31,437         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:35,530   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:35,531                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:35,532                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:35,532                    from ./base/sbml/SBMLVisitor.cpp:34:
2023-09-08T19:35:35,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:35,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:35,534         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:35,534   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:35,535                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:35,535                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:35:35,536                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:35:35,537   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:35,538     117 |     struct unary_function
2023-09-08T19:35:35,538         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:39,609   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:35:39,610                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:39,610                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:39,611                    from ./base/sbml/SBMLWriter.cpp:42:
2023-09-08T19:35:39,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:39,612      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:39,613         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:39,614   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:39,614                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:39,615                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:39,616                    from /usr/include/c++/12/ios:42,
2023-09-08T19:35:39,616                    from ./base/sbml/SBMLWriter.cpp:33:
2023-09-08T19:35:39,617   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:39,618     117 |     struct unary_function
2023-09-08T19:35:39,618         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:39,904   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T19:35:39,905   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:35:39,906      85 |   if (&(name) == NULL)
2023-09-08T19:35:39,906         |               ^
2023-09-08T19:35:39,907   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2023-09-08T19:35:39,908      83 | SBMLWriter::setProgramName (const std::string& name)
2023-09-08T19:35:39,909         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:35:39,910   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T19:35:39,910   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2023-09-08T19:35:39,911     109 |   if (&(version) == NULL)
2023-09-08T19:35:39,912         |                  ^
2023-09-08T19:35:39,912   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2023-09-08T19:35:39,913     107 | SBMLWriter::setProgramVersion (const std::string& version)
2023-09-08T19:35:39,913         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:35:40,468   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T19:35:40,469   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:40,469      85 |   if (&(name) == NULL)
2023-09-08T19:35:40,470         |   ^~
2023-09-08T19:35:40,470   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T19:35:40,471   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:40,471     109 |   if (&(version) == NULL)
2023-09-08T19:35:40,472         |   ^~
2023-09-08T19:35:44,067   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:44,068     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2023-09-08T19:35:44,068         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:44,069   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:44,070                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:44,070                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:44,071                    from /usr/include/c++/12/iomanip:40,
2023-09-08T19:35:44,072                    from ./base/sbml/SBO.cpp:33:
2023-09-08T19:35:44,073   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:44,073     117 |     struct unary_function
2023-09-08T19:35:44,074         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:52,428   In file included from ./base//sbml/Parameter.h:169,
2023-09-08T19:35:52,428                    from ./base//sbml/KineticLaw.h:169,
2023-09-08T19:35:52,429                    from ./base/sbml/SBase.cpp:46:
2023-09-08T19:35:52,430   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:52,431      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:52,432         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:52,432   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:52,433                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:52,433                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:52,434                    from /usr/include/c++/12/ios:42,
2023-09-08T19:35:52,435                    from /usr/include/c++/12/istream:38,
2023-09-08T19:35:52,435                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:35:52,436                    from ./base/sbml/SBase.cpp:33:
2023-09-08T19:35:52,437   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:52,437     117 |     struct unary_function
2023-09-08T19:35:52,438         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:53,004   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:53,005      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2023-09-08T19:35:53,005         |                                    ^~~~~~~~~~~~~~
2023-09-08T19:35:53,006   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:53,007     117 |     struct unary_function
2023-09-08T19:35:53,008         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:53,008   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:53,009      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2023-09-08T19:35:53,009         |                                   ^~~~~~~~~~~~~~
2023-09-08T19:35:53,010   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:53,010     117 |     struct unary_function
2023-09-08T19:35:53,011         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:53,032   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T19:35:53,033   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:35:53,034     380 |   if (&orig == NULL)
2023-09-08T19:35:53,034         |             ^
2023-09-08T19:35:53,035   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2023-09-08T19:35:53,035     378 | SBase::SBase(const SBase& orig)
2023-09-08T19:35:53,036         |              ~~~~~~~~~~~~~^~~~
2023-09-08T19:35:53,045   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T19:35:53,045   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:35:53,046     492 |   if (&rhs == NULL)
2023-09-08T19:35:53,047         |            ^
2023-09-08T19:35:53,047   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2023-09-08T19:35:53,048     490 | SBase& SBase::operator=(const SBase& rhs)
2023-09-08T19:35:53,049         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:35:53,069   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T19:35:53,069   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T19:35:53,070    1161 |   if (&(metaid) == NULL)
2023-09-08T19:35:53,071         |                 ^
2023-09-08T19:35:53,072   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2023-09-08T19:35:53,072    1159 | SBase::setMetaId (const std::string& metaid)
2023-09-08T19:35:53,073         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:35:53,077   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T19:35:53,078   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2023-09-08T19:35:53,079    1346 |   if (&(annotation) == NULL)
2023-09-08T19:35:53,080         |                     ^
2023-09-08T19:35:53,081   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2023-09-08T19:35:53,082    1344 | SBase::setAnnotation (const std::string& annotation)
2023-09-08T19:35:53,082         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:35:53,097   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T19:35:53,097   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2023-09-08T19:35:53,098    1716 |   if (&(notes) == NULL)
2023-09-08T19:35:53,099         |                ^
2023-09-08T19:35:53,099   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2023-09-08T19:35:53,100    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2023-09-08T19:35:53,101         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:35:53,134   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T19:35:53,135   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2023-09-08T19:35:53,136    2366 |   if (&(sboid) == NULL)
2023-09-08T19:35:53,137         |                ^
2023-09-08T19:35:53,138   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2023-09-08T19:35:53,139    2364 | SBase::setSBOTerm (const std::string &sboid)
2023-09-08T19:35:53,139         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:35:53,198   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2023-09-08T19:35:53,199   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2023-09-08T19:35:53,199    3605 |   if (&pkgName == NULL)
2023-09-08T19:35:53,200         |                ^
2023-09-08T19:35:53,200   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2023-09-08T19:35:53,201    3604 |   const std::string& pkgName = getPackageName();
2023-09-08T19:35:53,201         |                      ^~~~~~~
2023-09-08T19:35:53,388   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T19:35:53,389   ./base/sbml/SBase.cpp:5925:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:35:53,389    5925 |   if (&node == NULL) return;
2023-09-08T19:35:53,390         |             ^
2023-09-08T19:35:53,391   ./base/sbml/SBase.cpp:5923:22: note: ‘node’ declared here
2023-09-08T19:35:53,391    5923 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2023-09-08T19:35:53,392         |             ~~~~~~~~~^~~~
2023-09-08T19:35:54,187   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T19:35:54,188   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,189    2366 |   if (&(sboid) == NULL)
2023-09-08T19:35:54,189         |   ^~
2023-09-08T19:35:54,196   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T19:35:54,196   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,197    1346 |   if (&(annotation) == NULL)
2023-09-08T19:35:54,198         |   ^~
2023-09-08T19:35:54,217   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T19:35:54,218   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,218    1161 |   if (&(metaid) == NULL)
2023-09-08T19:35:54,219         |   ^~
2023-09-08T19:35:54,269   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T19:35:54,270   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,270     492 |   if (&rhs == NULL)
2023-09-08T19:35:54,271         |   ^~
2023-09-08T19:35:54,275   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T19:35:54,275   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,276     380 |   if (&orig == NULL)
2023-09-08T19:35:54,277         |   ^~
2023-09-08T19:35:54,286   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T19:35:54,287   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,288    1716 |   if (&(notes) == NULL)
2023-09-08T19:35:54,289         |   ^~
2023-09-08T19:35:54,292   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T19:35:54,293   ./base/sbml/SBase.cpp:5925:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:54,294    5925 |   if (&node == NULL) return;
2023-09-08T19:35:54,295         |   ^~
2023-09-08T19:36:11,533   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:11,533                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:11,533                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:11,534                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2023-09-08T19:36:11,534   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:11,535      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:11,535         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:11,536   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:11,536                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:11,537                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:11,537                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:11,538                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2023-09-08T19:36:11,538   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:11,539     117 |     struct unary_function
2023-09-08T19:36:11,539         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:11,855   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T19:36:11,855   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:11,856      97 |   if (&orig == NULL)
2023-09-08T19:36:11,856         |             ^
2023-09-08T19:36:11,857   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2023-09-08T19:36:11,858      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2023-09-08T19:36:11,858         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:11,860   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T19:36:11,860   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:11,861     115 |   if (&rhs == NULL)
2023-09-08T19:36:11,862         |            ^
2023-09-08T19:36:11,863   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2023-09-08T19:36:11,863     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2023-09-08T19:36:11,864         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:11,867   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T19:36:11,867   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:11,868     215 |   if (&(sid) == NULL)
2023-09-08T19:36:11,869         |              ^
2023-09-08T19:36:11,869   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2023-09-08T19:36:11,870     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2023-09-08T19:36:11,871         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:11,871   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T19:36:11,872   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:11,873     237 |   if (&(sid) == NULL)
2023-09-08T19:36:11,874         |              ^
2023-09-08T19:36:11,874   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2023-09-08T19:36:11,875     235 | SimpleSpeciesReference::setId (const std::string& sid)
2023-09-08T19:36:11,875         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:11,879   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T19:36:11,879   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:11,880     301 |   if (&(name) == NULL)
2023-09-08T19:36:11,880         |               ^
2023-09-08T19:36:11,881   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2023-09-08T19:36:11,882     299 | SimpleSpeciesReference::setName (const std::string& name)
2023-09-08T19:36:11,882         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:12,403   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T19:36:12,404   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:12,404      97 |   if (&orig == NULL)
2023-09-08T19:36:12,405         |   ^~
2023-09-08T19:36:12,406   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T19:36:12,406   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:12,407     115 |   if (&rhs == NULL)
2023-09-08T19:36:12,407         |   ^~
2023-09-08T19:36:12,408   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T19:36:12,409   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:12,409     215 |   if (&(sid) == NULL)
2023-09-08T19:36:12,410         |   ^~
2023-09-08T19:36:12,411   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T19:36:12,411   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:12,412     237 |   if (&(sid) == NULL)
2023-09-08T19:36:12,412         |   ^~
2023-09-08T19:36:12,413   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T19:36:12,414   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:12,414     301 |   if (&(name) == NULL)
2023-09-08T19:36:12,415         |   ^~
2023-09-08T19:36:17,120   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:17,121                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:17,121                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:17,122                    from ./base/sbml/Species.cpp:42:
2023-09-08T19:36:17,123   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:17,123      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:17,124         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:17,125   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:17,125                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:17,126                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:17,127                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:17,128                    from ./base/sbml/Species.cpp:35:
2023-09-08T19:36:17,129   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:17,129     117 |     struct unary_function
2023-09-08T19:36:17,130         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:17,427   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T19:36:17,427   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:17,428     167 |   if (&orig == NULL)
2023-09-08T19:36:17,428         |             ^
2023-09-08T19:36:17,429   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2023-09-08T19:36:17,429     164 | Species::Species(const Species& orig) :
2023-09-08T19:36:17,430         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:17,430   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T19:36:17,431   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:17,431     204 |   if (&rhs == NULL)
2023-09-08T19:36:17,432         |            ^
2023-09-08T19:36:17,432   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2023-09-08T19:36:17,433     202 | Species& Species::operator=(const Species& rhs)
2023-09-08T19:36:17,433         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,439   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T19:36:17,440   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,441     616 |   if (&(sid) == NULL)
2023-09-08T19:36:17,441         |              ^
2023-09-08T19:36:17,442   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2023-09-08T19:36:17,443     605 | Species::setId (const std::string& sid)
2023-09-08T19:36:17,443         |                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,444   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T19:36:17,445   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:17,445     641 |   if (&(name) == NULL)
2023-09-08T19:36:17,446         |               ^
2023-09-08T19:36:17,447   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2023-09-08T19:36:17,447     636 | Species::setName (const std::string& name)
2023-09-08T19:36:17,448         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:17,449   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T19:36:17,449   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,450     671 |   if (&(sid) == NULL)
2023-09-08T19:36:17,451         |              ^
2023-09-08T19:36:17,451   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2023-09-08T19:36:17,452     669 | Species::setSpeciesType (const std::string& sid)
2023-09-08T19:36:17,452         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,453   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T19:36:17,454   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,454     698 |   if (&(sid) == NULL)
2023-09-08T19:36:17,455         |              ^
2023-09-08T19:36:17,456   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2023-09-08T19:36:17,456     696 | Species::setCompartment (const std::string& sid)
2023-09-08T19:36:17,457         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,458   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T19:36:17,458   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,459     757 |   if (&(sid) == NULL)
2023-09-08T19:36:17,460         |              ^
2023-09-08T19:36:17,460   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2023-09-08T19:36:17,461     755 | Species::setSubstanceUnits (const std::string& sid)
2023-09-08T19:36:17,461         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,462   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T19:36:17,462   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,463     779 |   if (&(sid) == NULL)
2023-09-08T19:36:17,464         |              ^
2023-09-08T19:36:17,464   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2023-09-08T19:36:17,465     777 | Species::setSpatialSizeUnits (const std::string& sid)
2023-09-08T19:36:17,465         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,466   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T19:36:17,466   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,467     890 |   if (&(sid) == NULL)
2023-09-08T19:36:17,467         |              ^
2023-09-08T19:36:17,468   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2023-09-08T19:36:17,469     888 | Species::setConversionFactor (const std::string& sid)
2023-09-08T19:36:17,469         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,522   ./base/sbml/Species.cpp: At global scope:
2023-09-08T19:36:17,522   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:17,523    1913 | struct IdEqS : public unary_function<SBase*, bool>
2023-09-08T19:36:17,524         |                       ^~~~~~~~~~~~~~
2023-09-08T19:36:17,524   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:17,525     117 |     struct unary_function
2023-09-08T19:36:17,525         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:17,526   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T19:36:17,527   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,528    1936 |   if (&(sid) == NULL)
2023-09-08T19:36:17,528         |              ^
2023-09-08T19:36:17,529   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2023-09-08T19:36:17,529    1932 | ListOfSpecies::get (const std::string& sid) const
2023-09-08T19:36:17,530         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,531   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T19:36:17,532   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:17,533    1963 |   if (&(sid) != NULL)
2023-09-08T19:36:17,533         |              ^
2023-09-08T19:36:17,534   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2023-09-08T19:36:17,535    1958 | ListOfSpecies::remove (const std::string& sid)
2023-09-08T19:36:17,535         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:17,540   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2023-09-08T19:36:17,541   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:17,541    2041 |   catch (SBMLConstructorException)
2023-09-08T19:36:17,542         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:17,543   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:17,543   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:17,544    2057 |   catch (SBMLConstructorException)
2023-09-08T19:36:17,545         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:18,166   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T19:36:18,166   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,167    1936 |   if (&(sid) == NULL)
2023-09-08T19:36:18,167         |   ^~
2023-09-08T19:36:18,170   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T19:36:18,170   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,171     167 |   if (&orig == NULL)
2023-09-08T19:36:18,171         |   ^~
2023-09-08T19:36:18,172   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T19:36:18,172   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,173     204 |   if (&rhs == NULL)
2023-09-08T19:36:18,174         |   ^~
2023-09-08T19:36:18,175   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T19:36:18,175   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,176     616 |   if (&(sid) == NULL)
2023-09-08T19:36:18,176         |   ^~
2023-09-08T19:36:18,177   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T19:36:18,177   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,178     641 |   if (&(name) == NULL)
2023-09-08T19:36:18,179         |   ^~
2023-09-08T19:36:18,179   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T19:36:18,180   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,180     671 |   if (&(sid) == NULL)
2023-09-08T19:36:18,181         |   ^~
2023-09-08T19:36:18,182   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T19:36:18,183   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,183     698 |   if (&(sid) == NULL)
2023-09-08T19:36:18,184         |   ^~
2023-09-08T19:36:18,185   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T19:36:18,185   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,186     757 |   if (&(sid) == NULL)
2023-09-08T19:36:18,186         |   ^~
2023-09-08T19:36:18,187   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T19:36:18,188   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,188     779 |   if (&(sid) == NULL)
2023-09-08T19:36:18,189         |   ^~
2023-09-08T19:36:18,190   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T19:36:18,190   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,191     890 |   if (&(sid) == NULL)
2023-09-08T19:36:18,192         |   ^~
2023-09-08T19:36:18,193   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T19:36:18,193   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:18,194    1963 |   if (&(sid) != NULL)
2023-09-08T19:36:18,194         |   ^~
2023-09-08T19:36:28,223   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:28,223                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:28,224                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:28,224                    from ./base/sbml/SpeciesReference.cpp:48:
2023-09-08T19:36:28,225   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:28,225      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:28,226         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:28,226   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:28,227                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:28,227                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:28,228                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:28,228                    from ./base/sbml/SpeciesReference.cpp:35:
2023-09-08T19:36:28,229   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:28,229     117 |     struct unary_function
2023-09-08T19:36:28,230         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:28,542   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T19:36:28,542   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:28,543     129 |   if (&orig == NULL)
2023-09-08T19:36:28,544         |             ^
2023-09-08T19:36:28,544   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2023-09-08T19:36:28,545     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2023-09-08T19:36:28,546         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:28,547   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T19:36:28,548   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:28,548     157 |   if (&rhs == NULL)
2023-09-08T19:36:28,549         |            ^
2023-09-08T19:36:28,550   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2023-09-08T19:36:28,550     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2023-09-08T19:36:28,551         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:28,593   ./base/sbml/SpeciesReference.cpp: At global scope:
2023-09-08T19:36:28,593   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:28,594    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2023-09-08T19:36:28,595         |                         ^~~~~~~~~~~~~~
2023-09-08T19:36:28,596   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:28,596     117 |     struct unary_function
2023-09-08T19:36:28,597         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:28,601   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T19:36:28,602   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:28,603    1251 |   if (&(sid) == NULL)
2023-09-08T19:36:28,604         |              ^
2023-09-08T19:36:28,604   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2023-09-08T19:36:28,605    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2023-09-08T19:36:28,605         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:28,608   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T19:36:28,609   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:28,610    1279 |   if (&(sid) != NULL)
2023-09-08T19:36:28,610         |              ^
2023-09-08T19:36:28,611   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2023-09-08T19:36:28,611    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2023-09-08T19:36:28,612         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:28,626   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T19:36:28,627   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:28,627    1448 |   catch (SBMLConstructorException)
2023-09-08T19:36:28,628         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:28,629   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:28,629   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:28,630    1464 |   catch (SBMLConstructorException)
2023-09-08T19:36:28,630         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:28,631   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2023-09-08T19:36:28,632   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:28,633    1480 |   catch (SBMLConstructorException)
2023-09-08T19:36:28,634         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:28,634   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:28,635   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:28,636    1496 |   catch (SBMLConstructorException)
2023-09-08T19:36:28,636         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:29,231   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T19:36:29,232   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:29,233    1251 |   if (&(sid) == NULL)
2023-09-08T19:36:29,233         |   ^~
2023-09-08T19:36:29,237   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T19:36:29,237   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:29,238     129 |   if (&orig == NULL)
2023-09-08T19:36:29,239         |   ^~
2023-09-08T19:36:29,239   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T19:36:29,240   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:29,241     157 |   if (&rhs == NULL)
2023-09-08T19:36:29,242         |   ^~
2023-09-08T19:36:29,251   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T19:36:29,251   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:29,252    1279 |   if (&(sid) != NULL)
2023-09-08T19:36:29,252         |   ^~
2023-09-08T19:36:35,256   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:35,257                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:35,257                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:35,258                    from ./base/sbml/SpeciesType.cpp:41:
2023-09-08T19:36:35,258   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:35,259      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:35,259         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:35,260   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:35,261                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:35,261                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:35,262                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:35,262                    from ./base/sbml/SpeciesType.cpp:33:
2023-09-08T19:36:35,263   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:35,264     117 |     struct unary_function
2023-09-08T19:36:35,264         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:35,555   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T19:36:35,556   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:35,556      92 |   if (&orig == NULL)
2023-09-08T19:36:35,557         |             ^
2023-09-08T19:36:35,558   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2023-09-08T19:36:35,559      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2023-09-08T19:36:35,560         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:35,561   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T19:36:35,561   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:35,562     109 |   if (&rhs == NULL)
2023-09-08T19:36:35,563         |            ^
2023-09-08T19:36:35,564   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2023-09-08T19:36:35,564     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2023-09-08T19:36:35,565         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:35,566   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T19:36:35,566   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:35,567     206 |   if (&(sid) == NULL)
2023-09-08T19:36:35,568         |              ^
2023-09-08T19:36:35,569   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2023-09-08T19:36:35,569     195 | SpeciesType::setId (const std::string& sid)
2023-09-08T19:36:35,570         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:35,571   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T19:36:35,571   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:35,572     231 |   if (&(name) == NULL)
2023-09-08T19:36:35,573         |               ^
2023-09-08T19:36:35,574   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2023-09-08T19:36:35,574     226 | SpeciesType::setName (const std::string& name)
2023-09-08T19:36:35,575         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:35,578   ./base/sbml/SpeciesType.cpp: At global scope:
2023-09-08T19:36:35,579   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:35,579     541 | struct IdEqST : public unary_function<SBase*, bool>
2023-09-08T19:36:35,580         |                        ^~~~~~~~~~~~~~
2023-09-08T19:36:35,581   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:35,581     117 |     struct unary_function
2023-09-08T19:36:35,582         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:35,583   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T19:36:35,584   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:35,585     566 |   if (&(sid) == NULL)
2023-09-08T19:36:35,585         |              ^
2023-09-08T19:36:35,586   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2023-09-08T19:36:35,586     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2023-09-08T19:36:35,587         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:35,588   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T19:36:35,589   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:35,589     594 |   if (&(sid) != NULL)
2023-09-08T19:36:35,590         |              ^
2023-09-08T19:36:35,591   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2023-09-08T19:36:35,591     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2023-09-08T19:36:35,592         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:35,596   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2023-09-08T19:36:35,597   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:35,598     673 |   catch (SBMLConstructorException)
2023-09-08T19:36:35,599         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:35,600   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:35,601   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:35,601     689 |   catch (SBMLConstructorException)
2023-09-08T19:36:35,602         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:36,163   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T19:36:36,164   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,164     566 |   if (&(sid) == NULL)
2023-09-08T19:36:36,165         |   ^~
2023-09-08T19:36:36,166   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T19:36:36,167   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,168      92 |   if (&orig == NULL)
2023-09-08T19:36:36,168         |   ^~
2023-09-08T19:36:36,169   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T19:36:36,170   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,171     109 |   if (&rhs == NULL)
2023-09-08T19:36:36,172         |   ^~
2023-09-08T19:36:36,172   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T19:36:36,173   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,173     206 |   if (&(sid) == NULL)
2023-09-08T19:36:36,174         |   ^~
2023-09-08T19:36:36,174   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T19:36:36,175   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,175     231 |   if (&(name) == NULL)
2023-09-08T19:36:36,176         |   ^~
2023-09-08T19:36:36,177   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T19:36:36,177   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:36,178     594 |   if (&(sid) != NULL)
2023-09-08T19:36:36,178         |   ^~
2023-09-08T19:36:41,288   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:41,288                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:41,289                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:41,289                    from ./base/sbml/StoichiometryMath.cpp:46:
2023-09-08T19:36:41,290   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:41,291      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:41,291         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:41,292   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:41,293                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:41,294                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:41,294                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:41,295                    from ./base/sbml/StoichiometryMath.cpp:33:
2023-09-08T19:36:41,296   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:41,297     117 |     struct unary_function
2023-09-08T19:36:41,297         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:41,583   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T19:36:41,584   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:41,585      98 |   if (&orig == NULL)
2023-09-08T19:36:41,586         |             ^
2023-09-08T19:36:41,586   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2023-09-08T19:36:41,587      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2023-09-08T19:36:41,588         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:41,588   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T19:36:41,589   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:41,590     120 |   if (&rhs == NULL)
2023-09-08T19:36:41,590         |            ^
2023-09-08T19:36:41,591   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2023-09-08T19:36:41,592     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2023-09-08T19:36:41,593         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:41,608   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2023-09-08T19:36:41,609   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:41,610     627 |   catch (SBMLConstructorException)
2023-09-08T19:36:41,610         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:41,611   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:41,612   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:41,612     643 |   catch (SBMLConstructorException)
2023-09-08T19:36:41,613         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:42,115   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T19:36:42,116   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:42,117      98 |   if (&orig == NULL)
2023-09-08T19:36:42,117         |   ^~
2023-09-08T19:36:42,118   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T19:36:42,118   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:42,119     120 |   if (&rhs == NULL)
2023-09-08T19:36:42,119         |   ^~
2023-09-08T19:36:50,417   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:50,417                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:50,418                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:50,418                    from ./base/sbml/Trigger.cpp:46:
2023-09-08T19:36:50,419   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:50,420      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:50,421         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:50,421   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:50,422                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:50,423                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:50,424                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:50,424                    from ./base/sbml/Trigger.cpp:33:
2023-09-08T19:36:50,425   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:50,426     117 |     struct unary_function
2023-09-08T19:36:50,427         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:50,716   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T19:36:50,717   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:50,717     106 |   if (&orig == NULL)
2023-09-08T19:36:50,718         |             ^
2023-09-08T19:36:50,719   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2023-09-08T19:36:50,719     102 | Trigger::Trigger (const Trigger& orig) :
2023-09-08T19:36:50,720         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:50,721   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T19:36:50,721   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:50,722     131 |   if (&rhs == NULL)
2023-09-08T19:36:50,723         |            ^
2023-09-08T19:36:50,724   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2023-09-08T19:36:50,724     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2023-09-08T19:36:50,725         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:50,745   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2023-09-08T19:36:50,746   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:50,746     670 |   catch (SBMLConstructorException)
2023-09-08T19:36:50,747         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:50,747   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:50,748   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:50,749     686 |   catch (SBMLConstructorException)
2023-09-08T19:36:50,749         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:51,255   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T19:36:51,256   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:51,256     106 |   if (&orig == NULL)
2023-09-08T19:36:51,257         |   ^~
2023-09-08T19:36:51,257   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T19:36:51,258   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:51,258     131 |   if (&rhs == NULL)
2023-09-08T19:36:51,259         |   ^~
2023-09-08T19:36:55,699   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:36:55,699                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:55,699                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:55,700                    from ./base/sbml/Unit.cpp:41:
2023-09-08T19:36:55,700   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:55,701      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:55,702         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:55,703   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:55,703                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:55,704                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:55,705                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:55,705                    from ./base/sbml/Unit.cpp:33:
2023-09-08T19:36:55,706   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:55,707     117 |     struct unary_function
2023-09-08T19:36:55,707         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:56,001   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T19:36:56,002   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:56,003     150 |   if (&orig == NULL)
2023-09-08T19:36:56,003         |             ^
2023-09-08T19:36:56,004   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2023-09-08T19:36:56,004     147 | Unit::Unit(const Unit& orig) :
2023-09-08T19:36:56,005         |            ~~~~~~~~~~~~^~~~
2023-09-08T19:36:56,006   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T19:36:56,007   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:56,008     179 |   if (&rhs == NULL)
2023-09-08T19:36:56,008         |            ^
2023-09-08T19:36:56,009   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2023-09-08T19:36:56,010     177 | Unit& Unit::operator=(const Unit& rhs)
2023-09-08T19:36:56,010         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:36:56,111   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2023-09-08T19:36:56,111   ./base/sbml/Unit.cpp:2197:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:56,112    2197 |   catch (SBMLConstructorException)
2023-09-08T19:36:56,113         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:56,113   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:56,114   ./base/sbml/Unit.cpp:2213:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:56,114    2213 |   catch (SBMLConstructorException)
2023-09-08T19:36:56,115         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:56,717   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T19:36:56,717   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:56,718     150 |   if (&orig == NULL)
2023-09-08T19:36:56,718         |   ^~
2023-09-08T19:36:56,719   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T19:36:56,720   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:56,721     179 |   if (&rhs == NULL)
2023-09-08T19:36:56,721         |   ^~
2023-09-08T19:37:03,942   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:37:03,943                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:37:03,943                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:37:03,944                    from ./base/sbml/UnitDefinition.cpp:44:
2023-09-08T19:37:03,945   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:03,945      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:37:03,946         |                           ^~~~~~~~~~~~~~
2023-09-08T19:37:03,946   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:37:03,947                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:37:03,948                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:37:03,948                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:37:03,949                    from ./base/sbml/UnitDefinition.cpp:34:
2023-09-08T19:37:03,950   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:03,950     117 |     struct unary_function
2023-09-08T19:37:03,951         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:04,244   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T19:37:04,245   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:04,246     104 |   if (&orig == NULL)
2023-09-08T19:37:04,246         |             ^
2023-09-08T19:37:04,247   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2023-09-08T19:37:04,248     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2023-09-08T19:37:04,248         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:04,249   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T19:37:04,250   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:04,250     123 |   if (&rhs == NULL)
2023-09-08T19:37:04,251         |            ^
2023-09-08T19:37:04,252   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2023-09-08T19:37:04,253     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2023-09-08T19:37:04,253         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:04,256   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T19:37:04,257   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:04,258     262 |   if (&(sid) == NULL)
2023-09-08T19:37:04,258         |              ^
2023-09-08T19:37:04,259   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2023-09-08T19:37:04,259     251 | UnitDefinition::setId (const std::string& sid)
2023-09-08T19:37:04,260         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:04,260   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T19:37:04,261   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:04,261     287 |   if (&(name) == NULL)
2023-09-08T19:37:04,262         |               ^
2023-09-08T19:37:04,263   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2023-09-08T19:37:04,263     282 | UnitDefinition::setName (const std::string& name)
2023-09-08T19:37:04,264         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:04,321   ./base/sbml/UnitDefinition.cpp: At global scope:
2023-09-08T19:37:04,321   ./base/sbml/UnitDefinition.cpp:1666:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:04,322    1666 | struct IdEqUD : public unary_function<SBase*, bool>
2023-09-08T19:37:04,322         |                        ^~~~~~~~~~~~~~
2023-09-08T19:37:04,323   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:04,324     117 |     struct unary_function
2023-09-08T19:37:04,324         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:04,325   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T19:37:04,326   ./base/sbml/UnitDefinition.cpp:1691:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:04,327    1691 |   if (&(sid) == NULL)
2023-09-08T19:37:04,328         |              ^
2023-09-08T19:37:04,328   ./base/sbml/UnitDefinition.cpp:1687:48: note: ‘sid’ declared here
2023-09-08T19:37:04,329    1687 | ListOfUnitDefinitions::get (const std::string& sid) const
2023-09-08T19:37:04,330         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:04,331   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T19:37:04,332   ./base/sbml/UnitDefinition.cpp:1733:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:04,333    1733 |   if (&(sid) != NULL)
2023-09-08T19:37:04,334         |              ^
2023-09-08T19:37:04,334   ./base/sbml/UnitDefinition.cpp:1728:51: note: ‘sid’ declared here
2023-09-08T19:37:04,335    1728 | ListOfUnitDefinitions::remove (const std::string& sid)
2023-09-08T19:37:04,336         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:04,340   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2023-09-08T19:37:04,340   ./base/sbml/UnitDefinition.cpp:1811:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:37:04,341    1811 |   catch (SBMLConstructorException)
2023-09-08T19:37:04,342         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:04,343   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:37:04,343   ./base/sbml/UnitDefinition.cpp:1827:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:37:04,344    1827 |   catch (SBMLConstructorException)
2023-09-08T19:37:04,345         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:04,947   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T19:37:04,947   ./base/sbml/UnitDefinition.cpp:1691:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,948    1691 |   if (&(sid) == NULL)
2023-09-08T19:37:04,949         |   ^~
2023-09-08T19:37:04,950   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T19:37:04,950   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,951     123 |   if (&rhs == NULL)
2023-09-08T19:37:04,951         |   ^~
2023-09-08T19:37:04,953   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T19:37:04,954   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,954     262 |   if (&(sid) == NULL)
2023-09-08T19:37:04,955         |   ^~
2023-09-08T19:37:04,955   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T19:37:04,956   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,956     287 |   if (&(name) == NULL)
2023-09-08T19:37:04,957         |   ^~
2023-09-08T19:37:04,962   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T19:37:04,963   ./base/sbml/UnitDefinition.cpp:1733:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,964    1733 |   if (&(sid) != NULL)
2023-09-08T19:37:04,965         |   ^~
2023-09-08T19:37:04,968   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T19:37:04,969   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:04,969     104 |   if (&orig == NULL)
2023-09-08T19:37:04,970         |   ^~
2023-09-08T19:37:11,421   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T19:37:11,421   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:11,422     130 |   if (&orig == NULL)
2023-09-08T19:37:11,423         |             ^
2023-09-08T19:37:11,424   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2023-09-08T19:37:11,424     128 | CVTerm::CVTerm(const CVTerm& orig)
2023-09-08T19:37:11,425         |                ~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:11,426   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T19:37:11,426   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:11,427     150 |   if (&rhs == NULL)
2023-09-08T19:37:11,428         |            ^
2023-09-08T19:37:11,429   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2023-09-08T19:37:11,429     148 | CVTerm::operator=(const CVTerm& rhs)
2023-09-08T19:37:11,430         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T19:37:11,433   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T19:37:11,434   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T19:37:11,435     256 |   if (&qualifier == NULL)
2023-09-08T19:37:11,436         |                  ^
2023-09-08T19:37:11,437   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2023-09-08T19:37:11,437     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2023-09-08T19:37:11,438         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:37:11,438   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T19:37:11,439   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T19:37:11,440     273 |   if (&qualifier == NULL)
2023-09-08T19:37:11,440         |                  ^
2023-09-08T19:37:11,440   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2023-09-08T19:37:11,441     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2023-09-08T19:37:11,441         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:37:11,442   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T19:37:11,443   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2023-09-08T19:37:11,443     355 |   if (&resource == NULL || resource.empty())
2023-09-08T19:37:11,444         |                 ^
2023-09-08T19:37:11,444   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2023-09-08T19:37:11,445     353 | CVTerm::addResource(const std::string& resource)
2023-09-08T19:37:11,446         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:37:11,866   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T19:37:11,867   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:11,867     256 |   if (&qualifier == NULL)
2023-09-08T19:37:11,868         |   ^~
2023-09-08T19:37:11,868   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T19:37:11,869   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:11,870     273 |   if (&qualifier == NULL)
2023-09-08T19:37:11,870         |   ^~
2023-09-08T19:37:11,873   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T19:37:11,874   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:11,875     130 |   if (&orig == NULL)
2023-09-08T19:37:11,875         |   ^~
2023-09-08T19:37:11,876   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T19:37:11,877   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:11,877     150 |   if (&rhs == NULL)
2023-09-08T19:37:11,878         |   ^~
2023-09-08T19:37:11,878   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T19:37:11,879   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:11,880     355 |   if (&resource == NULL || resource.empty())
2023-09-08T19:37:11,880         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:14,624   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T19:37:14,625   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T19:37:14,625      75 |   if (&(date) == NULL)
2023-09-08T19:37:14,626         |               ^
2023-09-08T19:37:14,627   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2023-09-08T19:37:14,628      72 | Date::Date (const std::string& date) :
2023-09-08T19:37:14,628         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:14,629   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T19:37:14,629   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:14,630      91 |   if (&orig == NULL)
2023-09-08T19:37:14,631         |             ^
2023-09-08T19:37:14,631   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2023-09-08T19:37:14,632      89 | Date::Date(const Date& orig)
2023-09-08T19:37:14,632         |            ~~~~~~~~~~~~^~~~
2023-09-08T19:37:14,633   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T19:37:14,633   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:14,634     119 |   if (&rhs == NULL)
2023-09-08T19:37:14,635         |            ^
2023-09-08T19:37:14,635   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2023-09-08T19:37:14,636     117 | Date& Date::operator=(const Date& rhs)
2023-09-08T19:37:14,636         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:37:14,637   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T19:37:14,638   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T19:37:14,638     389 |   if (&(date) == NULL)
2023-09-08T19:37:14,639         |               ^
2023-09-08T19:37:14,639   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2023-09-08T19:37:14,640     383 | Date::setDateAsString (const std::string& date)
2023-09-08T19:37:14,641         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:15,070   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T19:37:15,071   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:15,071      91 |   if (&orig == NULL)
2023-09-08T19:37:15,072         |   ^~
2023-09-08T19:37:15,073   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T19:37:15,074   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:15,074     119 |   if (&rhs == NULL)
2023-09-08T19:37:15,075         |   ^~
2023-09-08T19:37:15,076   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T19:37:15,076   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:15,077      75 |   if (&(date) == NULL)
2023-09-08T19:37:15,078         |   ^~
2023-09-08T19:37:15,079   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T19:37:15,079   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:15,080     389 |   if (&(date) == NULL)
2023-09-08T19:37:15,081         |   ^~
2023-09-08T19:37:15,282   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2023-09-08T19:37:15,283   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:15,284     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:15,284         |                        ^~
2023-09-08T19:37:15,285   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2023-09-08T19:37:15,286     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:15,287         |                    ^~~~~~~~
2023-09-08T19:37:15,287   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2023-09-08T19:37:15,288     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:15,288         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,289   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:15,289     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T19:37:15,290         |                       ^
2023-09-08T19:37:15,290   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:15,291     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T19:37:15,291         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,292   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:15,292     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T19:37:15,293         |                       ^
2023-09-08T19:37:15,293   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:15,294     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T19:37:15,294         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,295   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:15,295     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T19:37:15,296         |                       ^
2023-09-08T19:37:15,296   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:15,297     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T19:37:15,298         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,298   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T19:37:15,299     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T19:37:15,300         |                       ^
2023-09-08T19:37:15,301   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T19:37:15,301     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T19:37:15,302         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,303   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:15,303     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T19:37:15,304         |                         ^
2023-09-08T19:37:15,305   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:15,305     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T19:37:15,306         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:15,306   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T19:37:15,307     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T19:37:15,308         |                         ^
2023-09-08T19:37:15,308   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T19:37:15,309     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T19:37:15,310         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,898   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T19:37:17,899   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:17,900     132 |   if (&orig == NULL)
2023-09-08T19:37:17,900         |             ^
2023-09-08T19:37:17,901   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2023-09-08T19:37:17,901     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2023-09-08T19:37:17,902         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,902   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T19:37:17,903   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:17,904     159 |   if (&rhs == NULL)
2023-09-08T19:37:17,904         |            ^
2023-09-08T19:37:17,905   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2023-09-08T19:37:17,905     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2023-09-08T19:37:17,906         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:17,907   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T19:37:17,907   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:17,908     233 |   if (&(name) == NULL)
2023-09-08T19:37:17,908         |               ^
2023-09-08T19:37:17,909   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2023-09-08T19:37:17,909     231 | ModelCreator::setFamilyName(const std::string& name)
2023-09-08T19:37:17,910         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,911   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T19:37:17,912   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:17,912     252 |   if (&(name) == NULL)
2023-09-08T19:37:17,913         |               ^
2023-09-08T19:37:17,914   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2023-09-08T19:37:17,915     250 | ModelCreator::setGivenName(const std::string& name)
2023-09-08T19:37:17,915         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,916   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T19:37:17,917   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2023-09-08T19:37:17,917     271 |   if (&(email) == NULL)
2023-09-08T19:37:17,918         |                ^
2023-09-08T19:37:17,919   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2023-09-08T19:37:17,919     269 | ModelCreator::setEmail(const std::string& email)
2023-09-08T19:37:17,920         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:37:17,921   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T19:37:17,922   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2023-09-08T19:37:17,922     287 |   if (&(organization) == NULL)
2023-09-08T19:37:17,923         |                       ^
2023-09-08T19:37:17,924   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2023-09-08T19:37:17,924     285 | ModelCreator::setOrganization(const std::string& organization)
2023-09-08T19:37:17,925         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T19:37:18,326   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T19:37:18,327   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,327     233 |   if (&(name) == NULL)
2023-09-08T19:37:18,328         |   ^~
2023-09-08T19:37:18,328   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T19:37:18,329   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,329     252 |   if (&(name) == NULL)
2023-09-08T19:37:18,330         |   ^~
2023-09-08T19:37:18,330   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T19:37:18,331   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,331     271 |   if (&(email) == NULL)
2023-09-08T19:37:18,332         |   ^~
2023-09-08T19:37:18,332   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T19:37:18,333   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,333     287 |   if (&(organization) == NULL)
2023-09-08T19:37:18,334         |   ^~
2023-09-08T19:37:18,334   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T19:37:18,335   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,335     132 |   if (&orig == NULL)
2023-09-08T19:37:18,336         |   ^~
2023-09-08T19:37:18,337   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T19:37:18,338   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:18,338     159 |   if (&rhs == NULL)
2023-09-08T19:37:18,339         |   ^~
2023-09-08T19:37:21,215   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T19:37:21,216   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:21,216      87 |   if (&orig == NULL)
2023-09-08T19:37:21,217         |             ^
2023-09-08T19:37:21,218   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2023-09-08T19:37:21,218      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2023-09-08T19:37:21,219         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:21,220   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T19:37:21,221   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:21,221     123 |   if (&rhs == NULL)
2023-09-08T19:37:21,222         |            ^
2023-09-08T19:37:21,223   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2023-09-08T19:37:21,223     121 | ModelHistory::operator=(const ModelHistory& rhs)
2023-09-08T19:37:21,224         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:21,636   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T19:37:21,637   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:21,638      87 |   if (&orig == NULL)
2023-09-08T19:37:21,639         |   ^~
2023-09-08T19:37:21,640   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T19:37:21,640   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:21,641     123 |   if (&rhs == NULL)
2023-09-08T19:37:21,641         |   ^~
2023-09-08T19:37:24,977   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:37:24,978                    from ./base//sbml/Model.h:426,
2023-09-08T19:37:24,978                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2023-09-08T19:37:24,979   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:24,979      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:37:24,980         |                           ^~~~~~~~~~~~~~
2023-09-08T19:37:24,980   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:37:24,981                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:37:24,981                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:37:24,982                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2023-09-08T19:37:24,983   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:24,983     117 |     struct unary_function
2023-09-08T19:37:24,984         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:25,309   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T19:37:25,310   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:37:25,311      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T19:37:25,311         |                ^
2023-09-08T19:37:25,312   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2023-09-08T19:37:25,313      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:37:25,313         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:37:25,906   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:25,906      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T19:37:25,907         |                ^
2023-09-08T19:37:48,264   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T19:37:48,264   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:48,265     110 |   if (&orig == NULL)
2023-09-08T19:37:48,266         |             ^
2023-09-08T19:37:48,267   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2023-09-08T19:37:48,267     108 |   (const ConversionOption& orig)
2023-09-08T19:37:48,268         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:48,269   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T19:37:48,270   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:48,270     128 |   if (&rhs == NULL)
2023-09-08T19:37:48,271         |            ^
2023-09-08T19:37:48,272   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2023-09-08T19:37:48,273     126 | ConversionOption::operator=(const ConversionOption& rhs)
2023-09-08T19:37:48,274         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:48,735   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T19:37:48,736   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:48,736     110 |   if (&orig == NULL)
2023-09-08T19:37:48,737         |   ^~
2023-09-08T19:37:48,737   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T19:37:48,738   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:48,738     128 |   if (&rhs == NULL)
2023-09-08T19:37:48,739         |   ^~
2023-09-08T19:37:53,438   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T19:37:53,438   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:53,439      56 |   if (&orig == NULL)
2023-09-08T19:37:53,439         |             ^
2023-09-08T19:37:53,440   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2023-09-08T19:37:53,440      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2023-09-08T19:37:53,441         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:53,503   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T19:37:53,504   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:53,505      79 |   if (&rhs == NULL)
2023-09-08T19:37:53,505         |            ^
2023-09-08T19:37:53,506   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2023-09-08T19:37:53,507      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2023-09-08T19:37:53,508         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:53,521   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T19:37:53,522   ./base/sbml/conversion/ConversionProperties.cpp:229:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2023-09-08T19:37:53,523     229 |   if (&option == NULL) return;
2023-09-08T19:37:53,523         |               ^
2023-09-08T19:37:53,524   ./base/sbml/conversion/ConversionProperties.cpp:227:57: note: ‘option’ declared here
2023-09-08T19:37:53,525     227 | ConversionProperties::addOption(const ConversionOption &option)
2023-09-08T19:37:53,525         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:37:54,126   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T19:37:54,127   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:54,128      56 |   if (&orig == NULL)
2023-09-08T19:37:54,128         |   ^~
2023-09-08T19:37:54,129   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T19:37:54,130   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:54,131      79 |   if (&rhs == NULL)
2023-09-08T19:37:54,131         |   ^~
2023-09-08T19:37:54,132   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T19:37:54,133   ./base/sbml/conversion/ConversionProperties.cpp:229:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:54,134     229 |   if (&option == NULL) return;
2023-09-08T19:37:54,134         |   ^~
2023-09-08T19:38:00,744   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:00,745                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:00,745                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:00,745                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:00,746                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:00,746                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75,
2023-09-08T19:38:00,747                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2023-09-08T19:38:00,747   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:00,748      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:00,748         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:00,749   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:00,749                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:00,750                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:00,751                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:74:
2023-09-08T19:38:00,751   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:00,752     117 |     struct unary_function
2023-09-08T19:38:00,752         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:04,957   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:04,958                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:04,959                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:04,959                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:04,960                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:04,961                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2023-09-08T19:38:04,961   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:04,962      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:04,963         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:04,964   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:04,964                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T19:38:04,965   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:04,966     117 |     struct unary_function
2023-09-08T19:38:04,966         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:05,256   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T19:38:05,256   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:38:05,257      67 |   if (&orig == NULL)
2023-09-08T19:38:05,258         |             ^
2023-09-08T19:38:05,258   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2023-09-08T19:38:05,259      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2023-09-08T19:38:05,260         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:38:05,261   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T19:38:05,261   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:05,262     103 |   if (&rhs == NULL)
2023-09-08T19:38:05,263         |            ^
2023-09-08T19:38:05,264   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2023-09-08T19:38:05,264     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2023-09-08T19:38:05,265         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:05,748   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T19:38:05,748   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:05,749      67 |   if (&orig == NULL)
2023-09-08T19:38:05,749         |   ^~
2023-09-08T19:38:05,750   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T19:38:05,750   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:05,751     103 |   if (&rhs == NULL)
2023-09-08T19:38:05,751         |   ^~
2023-09-08T19:38:09,195   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:09,196                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:09,197                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:09,197                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:09,198                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:09,198                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2023-09-08T19:38:09,199                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2023-09-08T19:38:09,199   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:09,200      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:09,201         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:09,202   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T19:38:09,202                    from /usr/include/c++/12/vector:66,
2023-09-08T19:38:09,203                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2023-09-08T19:38:09,204   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:09,205     117 |     struct unary_function
2023-09-08T19:38:09,205         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:13,534   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:13,535                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:13,536                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:13,537                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:13,537                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:13,538                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75,
2023-09-08T19:38:13,539                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2023-09-08T19:38:13,539   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:13,540      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:13,541         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:13,541   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:13,542                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:13,543                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:13,543                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:74:
2023-09-08T19:38:13,544   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:13,545     117 |     struct unary_function
2023-09-08T19:38:13,546         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:13,847   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:13,848   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:102:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:13,848     102 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T19:38:13,849         |              ^
2023-09-08T19:38:13,849   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:100:80: note: ‘props’ declared here
2023-09-08T19:38:13,850     100 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:13,851         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:13,856   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2023-09-08T19:38:13,856   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:206:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2023-09-08T19:38:13,857     206 |           ->isSetMath(), &idsToSkip)
2023-09-08T19:38:13,857         |                          ^~~~~~~~~~
2023-09-08T19:38:13,858   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:143:10: note: ‘idsToSkip’ declared here
2023-09-08T19:38:13,858     143 |   IdList idsToSkip;
2023-09-08T19:38:13,859         |          ^~~~~~~~~
2023-09-08T19:38:14,360   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:14,360   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:102:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:14,361     102 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T19:38:14,362         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:18,305   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:18,305                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:18,306                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:18,307                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:18,308                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:18,308                    from ./base//sbml/conversion/SBMLIdConverter.h:77,
2023-09-08T19:38:18,309                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2023-09-08T19:38:18,310   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:18,310      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:18,311         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:18,312   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:18,313                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:18,313                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:18,314                    from ./base//sbml/conversion/SBMLIdConverter.h:76:
2023-09-08T19:38:18,315   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:18,315     117 |     struct unary_function
2023-09-08T19:38:18,316         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:18,614   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:18,615   ./base/sbml/conversion/SBMLIdConverter.cpp:105:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:18,615     105 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T19:38:18,616         |              ^
2023-09-08T19:38:18,617   ./base/sbml/conversion/SBMLIdConverter.cpp:103:64: note: ‘props’ declared here
2023-09-08T19:38:18,617     103 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:18,618         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:19,286   ./base/sbml/conversion/SBMLIdConverter.cpp:105:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:19,287     105 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T19:38:19,287         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:23,926   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:23,926                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:23,927                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:23,927                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:23,928                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:23,928                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2023-09-08T19:38:23,929                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2023-09-08T19:38:23,929   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:23,930      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:23,930         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:23,931   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:23,932                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T19:38:23,933   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:23,933     117 |     struct unary_function
2023-09-08T19:38:23,934         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:24,234   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T19:38:24,234   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:24,235      91 |   if (&rhs == NULL)
2023-09-08T19:38:24,236         |            ^
2023-09-08T19:38:24,237   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2023-09-08T19:38:24,237      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2023-09-08T19:38:24,238         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:24,240   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:24,241   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:24,241     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T19:38:24,242         |              ^
2023-09-08T19:38:24,243   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:122:72: note: ‘props’ declared here
2023-09-08T19:38:24,243     122 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:24,244         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:24,746   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T19:38:24,746   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:24,748      91 |   if (&rhs == NULL)
2023-09-08T19:38:24,748         |   ^~
2023-09-08T19:38:24,749   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:24,749   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:24,749     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T19:38:24,750         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:28,597   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:28,598                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:28,598                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:28,599                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:28,599                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:28,600                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2023-09-08T19:38:28,600                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2023-09-08T19:38:28,601   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:28,601      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:28,602         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:28,603   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:28,603                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:28,604                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:28,604                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2023-09-08T19:38:28,605   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:28,606     117 |     struct unary_function
2023-09-08T19:38:28,606         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:28,908   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:28,908   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:28,909      99 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T19:38:28,910         |              ^
2023-09-08T19:38:28,910   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:97:79: note: ‘props’ declared here
2023-09-08T19:38:28,911      97 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:28,912         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:29,391   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:29,392      99 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T19:38:29,392         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:32,785   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:32,785                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:32,786                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:32,787                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:32,787                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:32,788                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2023-09-08T19:38:32,789                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2023-09-08T19:38:32,789   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:32,790      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:32,790         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:32,791   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:32,791                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:32,792                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:32,792                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2023-09-08T19:38:32,793   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:32,793     117 |     struct unary_function
2023-09-08T19:38:32,794         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:33,175   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T19:38:33,176   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:33,177      89 |   if (&rhs == NULL)
2023-09-08T19:38:33,177         |            ^
2023-09-08T19:38:33,178   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2023-09-08T19:38:33,178      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2023-09-08T19:38:33,179         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:33,182   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:33,183   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:33,184     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T19:38:33,185         |              ^
2023-09-08T19:38:33,185   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:123:74: note: ‘props’ declared here
2023-09-08T19:38:33,186     123 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:33,187         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:33,766   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T19:38:33,767   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:33,768      89 |   if (&rhs == NULL)
2023-09-08T19:38:33,768         |   ^~
2023-09-08T19:38:33,769   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:33,769   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:33,770     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T19:38:33,771         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:38,773   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:38,774                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:38,775                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:38,775                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:38,776                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:38,777                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2023-09-08T19:38:38,778                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2023-09-08T19:38:38,778   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:38,779      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:38,779         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:38,780   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:38,781                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:38,782                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:38,783                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2023-09-08T19:38:38,784   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:38,784     117 |     struct unary_function
2023-09-08T19:38:38,785         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:39,082   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:39,083   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:106:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:39,084     106 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T19:38:39,084         |              ^
2023-09-08T19:38:39,085   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:104:76: note: ‘props’ declared here
2023-09-08T19:38:39,086     104 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:39,087         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:39,616   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:106:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:39,617     106 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T19:38:39,617         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:43,452   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:43,452                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:43,453                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:43,453                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:43,454                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:43,455                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2023-09-08T19:38:43,455                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2023-09-08T19:38:43,456   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:43,456      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:43,457         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:43,458   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:43,458                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:43,459                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:43,460                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2023-09-08T19:38:43,460   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:43,461     117 |     struct unary_function
2023-09-08T19:38:43,462         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:43,780   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:43,781   ./base/sbml/conversion/SBMLReactionConverter.cpp:108:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:43,781     108 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T19:38:43,782         |              ^
2023-09-08T19:38:43,782   ./base/sbml/conversion/SBMLReactionConverter.cpp:106:70: note: ‘props’ declared here
2023-09-08T19:38:43,783     106 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:43,783         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:44,387   ./base/sbml/conversion/SBMLReactionConverter.cpp:108:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:44,387     108 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T19:38:44,388         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:49,435   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:49,436                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:49,436                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:49,437                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:49,437                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:49,438                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2023-09-08T19:38:49,438                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2023-09-08T19:38:49,439   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:49,440      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:49,441         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:49,441   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:49,442                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:49,443                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:49,444                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2023-09-08T19:38:49,444   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:49,445     117 |     struct unary_function
2023-09-08T19:38:49,446         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:49,751   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:49,751   ./base/sbml/conversion/SBMLRuleConverter.cpp:103:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:49,752     103 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T19:38:49,753         |              ^
2023-09-08T19:38:49,754   ./base/sbml/conversion/SBMLRuleConverter.cpp:101:68: note: ‘props’ declared here
2023-09-08T19:38:49,755     101 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:49,755         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:50,803   ./base/sbml/conversion/SBMLRuleConverter.cpp:103:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:50,804     103 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T19:38:50,804         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:58,772   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:38:58,772                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:58,776                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:58,776                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:58,777                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:38:58,778                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2023-09-08T19:38:58,778                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2023-09-08T19:38:58,779   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:58,779      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:58,780         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:58,780   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:58,781                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:58,781                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:58,782                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2023-09-08T19:38:58,782   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:58,783     117 |     struct unary_function
2023-09-08T19:38:58,783         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:59,103   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T19:38:59,103   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:59,104      86 |   if (&rhs == NULL)
2023-09-08T19:38:59,104         |            ^
2023-09-08T19:38:59,105   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2023-09-08T19:38:59,106      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2023-09-08T19:38:59,106         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:59,110   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:59,110   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:59,111     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T19:38:59,111         |              ^
2023-09-08T19:38:59,112   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:119:74: note: ‘props’ declared here
2023-09-08T19:38:59,113     119 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:59,113         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:59,597   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T19:38:59,598   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:59,599      86 |   if (&rhs == NULL)
2023-09-08T19:38:59,599         |   ^~
2023-09-08T19:38:59,600   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:59,601   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:59,602     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T19:38:59,602         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:39:03,127   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:03,128                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:03,129                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:03,129                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:39:03,130                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:39:03,130                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70,
2023-09-08T19:39:03,131                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2023-09-08T19:39:03,131   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:03,132      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:03,132         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:03,133   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:03,133                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:03,134                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:03,134                    from ./base//sbml/conversion/SBMLUnitsConverter.h:69:
2023-09-08T19:39:03,135   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:03,135     117 |     struct unary_function
2023-09-08T19:39:03,136         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:03,481   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T19:39:03,481   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:03,482      91 |   if (&rhs == NULL)
2023-09-08T19:39:03,483         |            ^
2023-09-08T19:39:03,483   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2023-09-08T19:39:03,484      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2023-09-08T19:39:03,484         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:03,485   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:03,486   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:39:03,487     126 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T19:39:03,487         |              ^
2023-09-08T19:39:03,488   ./base/sbml/conversion/SBMLUnitsConverter.cpp:124:67: note: ‘props’ declared here
2023-09-08T19:39:03,489     124 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:39:03,489         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:39:04,290   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T19:39:04,291   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:04,292      91 |   if (&rhs == NULL)
2023-09-08T19:39:04,293         |   ^~
2023-09-08T19:39:04,294   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:04,294   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:04,295     126 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T19:39:04,296         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:39:11,314   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:11,315                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:11,316                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:11,317                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:39:11,317                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2023-09-08T19:39:11,318   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:11,318      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:11,319         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:11,319   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:11,320                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:11,320                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:11,321                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2023-09-08T19:39:11,321   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:11,322     117 |     struct unary_function
2023-09-08T19:39:11,322         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:16,008   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:16,008                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:16,009                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:16,010                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:16,010                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:16,011                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:16,011                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2023-09-08T19:39:16,012   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:16,012      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:16,013         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:16,014   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:16,015                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:16,015                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:16,016                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2023-09-08T19:39:16,017                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2023-09-08T19:39:16,017   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:16,018     117 |     struct unary_function
2023-09-08T19:39:16,019         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:20,045   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:20,045                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:20,046                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:20,047                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:39:20,047                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2023-09-08T19:39:20,048   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:20,049      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:20,049         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:20,050   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:20,051                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:20,051                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:20,052                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:39:20,053   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:20,053     117 |     struct unary_function
2023-09-08T19:39:20,054         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:20,362   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T19:39:20,363   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:20,363     119 |   if (&attributes == NULL) return;
2023-09-08T19:39:20,364         |                   ^
2023-09-08T19:39:20,364   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2023-09-08T19:39:20,365     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2023-09-08T19:39:20,366         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:20,366   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:20,367   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:20,367     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:20,368         |                   ^
2023-09-08T19:39:20,368   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2023-09-08T19:39:20,369     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:20,369         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:20,370   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:20,371     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:20,371         |                                                  ^
2023-09-08T19:39:20,372   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:20,373     133 |                                     const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:20,373         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:20,374   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2023-09-08T19:39:20,375   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:39:20,376     169 |   if (&stream == NULL) return;
2023-09-08T19:39:20,376         |               ^
2023-09-08T19:39:20,377   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2023-09-08T19:39:20,378     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2023-09-08T19:39:20,379         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:39:20,867   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:20,867     169 |   if (&stream == NULL) return;
2023-09-08T19:39:20,868         |   ^~
2023-09-08T19:39:20,871   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T19:39:20,872   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:20,872     119 |   if (&attributes == NULL) return;
2023-09-08T19:39:20,873         |   ^~
2023-09-08T19:39:20,874   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:20,874   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:20,876     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:20,876         |                   ^
2023-09-08T19:39:20,877   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:20,877     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:20,878         |                                                  ^
2023-09-08T19:39:24,721   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:24,721                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:24,722                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:24,723                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:39:24,723                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:53,
2023-09-08T19:39:24,724                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2023-09-08T19:39:24,724   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:24,725      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:24,725         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:24,726   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:24,727                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:24,727                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:24,728                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:39:24,728   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:24,729     117 |     struct unary_function
2023-09-08T19:39:24,730         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:25,040   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:25,040   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:25,041      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:25,042         |                   ^
2023-09-08T19:39:25,043   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2023-09-08T19:39:25,043      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:25,044         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:25,045   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:25,045      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:25,046         |                                                  ^
2023-09-08T19:39:25,047   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:25,047      89 |                                           const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:25,048         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:25,517   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:25,518      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:25,519         |                   ^
2023-09-08T19:39:25,520   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:25,520      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:25,521         |                                                  ^
2023-09-08T19:39:28,790   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:28,790                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:28,791                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:28,791                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:28,792                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:28,792                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2023-09-08T19:39:28,793   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:28,793      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:28,794         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:28,795   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:28,795                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:28,796                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:28,796                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:28,797   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:28,797     117 |     struct unary_function
2023-09-08T19:39:28,798         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:29,155   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T19:39:29,156   ./base/sbml/extension/SBMLExtension.cpp:233:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:29,157     233 |   if (&extPoint == NULL) return NULL;
2023-09-08T19:39:29,157         |                 ^
2023-09-08T19:39:29,158   ./base/sbml/extension/SBMLExtension.cpp:231:65: note: ‘extPoint’ declared here
2023-09-08T19:39:29,159     231 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:29,160         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:29,161   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T19:39:29,162   ./base/sbml/extension/SBMLExtension.cpp:304:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:29,163     304 |   if(&uri == NULL) return false;
2023-09-08T19:39:29,164         |           ^
2023-09-08T19:39:29,164   ./base/sbml/extension/SBMLExtension.cpp:302:47: note: ‘uri’ declared here
2023-09-08T19:39:29,165     302 | SBMLExtension::isSupported(const std::string& uri) const
2023-09-08T19:39:29,166         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:29,789   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T19:39:29,790   ./base/sbml/extension/SBMLExtension.cpp:233:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:29,790     233 |   if (&extPoint == NULL) return NULL;
2023-09-08T19:39:29,791         |   ^~
2023-09-08T19:39:29,801   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T19:39:29,802   ./base/sbml/extension/SBMLExtension.cpp:304:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:29,803     304 |   if(&uri == NULL) return false;
2023-09-08T19:39:29,804         |   ^~
2023-09-08T19:39:36,203   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:36,203                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:36,204                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:36,204                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:36,205                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:36,206                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:36,206                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2023-09-08T19:39:36,207   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:36,207      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:36,208         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:36,208   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:36,209                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:36,209                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:36,210                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2023-09-08T19:39:36,210   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:36,211     117 |     struct unary_function
2023-09-08T19:39:36,212         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:40,266   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:40,267                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:40,267                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:40,268                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:40,269                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:40,270                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:40,270                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2023-09-08T19:39:40,271   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:40,271      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:40,272         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:40,273   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:40,274                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:40,274                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:40,275                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:40,276   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:40,276     117 |     struct unary_function
2023-09-08T19:39:40,277         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:40,653   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T19:39:40,653   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:39:40,654     103 |   if (&orig != NULL)
2023-09-08T19:39:40,655         |             ^
2023-09-08T19:39:40,655   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2023-09-08T19:39:40,656     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2023-09-08T19:39:40,657         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:39:40,777   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T19:39:40,777   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:40,779     221 |   if(&uri == NULL) return NULL;
2023-09-08T19:39:40,779         |           ^
2023-09-08T19:39:40,780   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2023-09-08T19:39:40,780     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2023-09-08T19:39:40,781         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:40,797   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T19:39:40,798   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:40,798     245 |   if (&extPoint != NULL)
2023-09-08T19:39:40,799         |                 ^
2023-09-08T19:39:40,799   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2023-09-08T19:39:40,800     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:40,801         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:40,804   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T19:39:40,805   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:40,806     272 |   if (&uri != NULL)
2023-09-08T19:39:40,806         |            ^
2023-09-08T19:39:40,807   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2023-09-08T19:39:40,808     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2023-09-08T19:39:40,809         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:40,810   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T19:39:40,811   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:40,811     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:40,812         |                ^
2023-09-08T19:39:40,813   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2023-09-08T19:39:40,814     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T19:39:40,814         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:40,815   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:40,816     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:40,816         |                                ^
2023-09-08T19:39:40,817   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2023-09-08T19:39:40,818     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T19:39:40,818         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:40,819   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T19:39:40,820   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:40,821     347 |   if (&extPoint == NULL) return 0;
2023-09-08T19:39:40,821         |                 ^
2023-09-08T19:39:40,822   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2023-09-08T19:39:40,822     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:40,823         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:40,824   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2023-09-08T19:39:40,824   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2023-09-08T19:39:40,825     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2023-09-08T19:39:40,825         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T19:39:41,699   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T19:39:41,700   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,701     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:41,701         |                ^
2023-09-08T19:39:41,702   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,703     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:41,703         |                                ^
2023-09-08T19:39:41,704   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T19:39:41,704   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,705     347 |   if (&extPoint == NULL) return 0;
2023-09-08T19:39:41,706         |   ^~
2023-09-08T19:39:41,706   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T19:39:41,707   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,708     245 |   if (&extPoint != NULL)
2023-09-08T19:39:41,708         |   ^~
2023-09-08T19:39:41,709   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T19:39:41,710   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,710     272 |   if (&uri != NULL)
2023-09-08T19:39:41,711         |   ^~
2023-09-08T19:39:41,713   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T19:39:41,713   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,714     221 |   if(&uri == NULL) return NULL;
2023-09-08T19:39:41,715         |   ^~
2023-09-08T19:39:41,717   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T19:39:41,718   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:41,719     103 |   if (&orig != NULL)
2023-09-08T19:39:41,720         |   ^~
2023-09-08T19:39:46,094   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:46,096   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T19:39:46,097      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,099         |            ^
2023-09-08T19:39:46,101   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2023-09-08T19:39:46,102      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:46,104         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:46,105   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:46,107      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,108         |                            ^
2023-09-08T19:39:46,110   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2023-09-08T19:39:46,111      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:46,113         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:46,114   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:46,115   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T19:39:46,117     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,118         |            ^
2023-09-08T19:39:46,119   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2023-09-08T19:39:46,121     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:46,122         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:46,123   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:46,125     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,126         |                            ^
2023-09-08T19:39:46,128   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2023-09-08T19:39:46,129     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:46,131         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:46,423   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:46,424   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:46,424      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,425         |            ^
2023-09-08T19:39:46,426   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:46,426      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,427         |                            ^
2023-09-08T19:39:46,427   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:46,428   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:46,429     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,429         |            ^
2023-09-08T19:39:46,430   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:46,430     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:46,431         |                            ^
2023-09-08T19:39:49,786   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:49,787                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:49,788                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:49,788                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:39:49,789                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2023-09-08T19:39:49,789   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:49,790      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:49,790         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:49,791   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:49,792                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:49,792                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:49,793                    from ./base//sbml/extension/SBasePlugin.h:252:
2023-09-08T19:39:49,793   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:49,794     117 |     struct unary_function
2023-09-08T19:39:49,794         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:50,159   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:50,160   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:50,160     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:50,161         |                   ^
2023-09-08T19:39:50,161   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2023-09-08T19:39:50,162     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:50,163         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:50,163   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:50,164     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:50,165         |                                                  ^
2023-09-08T19:39:50,165   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:50,166     576 |                              const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:50,167         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:50,167   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T19:39:50,168   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:50,169     683 |   if(&element == NULL) return;
2023-09-08T19:39:50,169         |               ^
2023-09-08T19:39:50,170   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2023-09-08T19:39:50,171     678 | SBasePlugin::logUnknownElement(const std::string &element,
2023-09-08T19:39:50,172         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:50,175   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:50,176   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:39:50,176     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,177         |                  ^
2023-09-08T19:39:50,177   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2023-09-08T19:39:50,178     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2023-09-08T19:39:50,178         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:39:50,179   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:50,179     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,180         |                                      ^
2023-09-08T19:39:50,181   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2023-09-08T19:39:50,181     714 |                                  const std::string& element)
2023-09-08T19:39:50,182         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:50,186   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:50,186   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:39:50,187     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,188         |                  ^
2023-09-08T19:39:50,188   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2023-09-08T19:39:50,189     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2023-09-08T19:39:50,189         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:39:50,190   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:50,191     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,191         |                                      ^
2023-09-08T19:39:50,192   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2023-09-08T19:39:50,192     748 |                                     const std::string& element)
2023-09-08T19:39:50,193         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:50,743   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:50,743   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,744     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:50,745         |                   ^
2023-09-08T19:39:50,745   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,746     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:50,747         |                                                  ^
2023-09-08T19:39:50,748   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T19:39:50,748   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,749     683 |   if(&element == NULL) return;
2023-09-08T19:39:50,750         |   ^~
2023-09-08T19:39:50,751   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:50,751   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,752     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,752         |                  ^
2023-09-08T19:39:50,753   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,754     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,754         |                                      ^
2023-09-08T19:39:50,755   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:50,755   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,756     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,757         |                  ^
2023-09-08T19:39:50,757   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:50,758     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:50,758         |                                      ^
2023-09-08T19:39:55,624   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:39:55,625                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:55,625                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:55,626                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:55,627                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2023-09-08T19:39:55,627   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:55,628      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:55,629         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:55,629   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:55,630                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:55,631                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:55,631                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:55,632   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:55,633     117 |     struct unary_function
2023-09-08T19:39:55,633         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:55,932   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2023-09-08T19:39:55,932   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:55,933     148 |   if (&uri == NULL) return false;
2023-09-08T19:39:55,934         |            ^
2023-09-08T19:39:55,934   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2023-09-08T19:39:55,935     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2023-09-08T19:39:55,936         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:56,429   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:56,429     148 |   if (&uri == NULL) return false;
2023-09-08T19:39:56,430         |   ^~
2023-09-08T19:40:00,213   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:40:00,214                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:00,214                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:00,215                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:40:00,215                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:40:00,216                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:40:00,216                    from ./base/sbml/math/ASTBase.cpp:43:
2023-09-08T19:40:00,217   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:00,217      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:00,218         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:00,218   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:00,219                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:00,219                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:00,220                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:00,220                    from ./base/sbml/math/ASTBase.cpp:41:
2023-09-08T19:40:00,221   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:00,221     117 |     struct unary_function
2023-09-08T19:40:00,222         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:00,570   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:00,570      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:00,571         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:40:00,571   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:00,572     117 |     struct unary_function
2023-09-08T19:40:00,573         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:00,573   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:00,574      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:00,574         |                                       ^~~~~~~~~~~~~~
2023-09-08T19:40:00,575   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:00,576     117 |     struct unary_function
2023-09-08T19:40:00,577         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:00,577   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:00,578      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:00,579         |                                              ^~~~~~~~~~~~~~
2023-09-08T19:40:00,579   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:00,580     117 |     struct unary_function
2023-09-08T19:40:00,581         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:00,659   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T19:40:00,660   ./base/sbml/math/ASTBase.cpp:1467:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,661    1467 |   if (&stream == NULL) return;
2023-09-08T19:40:00,661         |               ^
2023-09-08T19:40:00,662   ./base/sbml/math/ASTBase.cpp:1465:36: note: ‘stream’ declared here
2023-09-08T19:40:00,663    1465 |                 , XMLOutputStream& stream ) const
2023-09-08T19:40:00,664         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:00,668   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T19:40:00,669   ./base/sbml/math/ASTBase.cpp:1498:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T19:40:00,669    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:00,670         |                 ^
2023-09-08T19:40:00,670   ./base/sbml/math/ASTBase.cpp:1494:50: note: ‘mantissa’ declared here
2023-09-08T19:40:00,671    1494 | ASTBase::writeENotation (  const std::string&    mantissa
2023-09-08T19:40:00,671         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:40:00,672   ./base/sbml/math/ASTBase.cpp:1498:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2023-09-08T19:40:00,672    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:00,673         |                                      ^
2023-09-08T19:40:00,674   ./base/sbml/math/ASTBase.cpp:1495:56: note: ‘exponent’ declared here
2023-09-08T19:40:00,674    1495 |                                , const std::string&    exponent
2023-09-08T19:40:00,675         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:40:00,675   ./base/sbml/math/ASTBase.cpp:1498:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,676    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:00,676         |                                                         ^
2023-09-08T19:40:00,677   ./base/sbml/math/ASTBase.cpp:1496:36: note: ‘stream’ declared here
2023-09-08T19:40:00,677    1496 |                 , XMLOutputStream& stream ) const
2023-09-08T19:40:00,678         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:00,682   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T19:40:00,683   ./base/sbml/math/ASTBase.cpp:1511:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,683    1511 |   if (&stream == NULL) return;
2023-09-08T19:40:00,684         |               ^
2023-09-08T19:40:00,684   ./base/sbml/math/ASTBase.cpp:1509:44: note: ‘stream’ declared here
2023-09-08T19:40:00,685    1509 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2023-09-08T19:40:00,686         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:00,687   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T19:40:00,688   ./base/sbml/math/ASTBase.cpp:1522:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,689    1522 |   if (&stream == NULL) return;
2023-09-08T19:40:00,690         |               ^
2023-09-08T19:40:00,690   ./base/sbml/math/ASTBase.cpp:1520:41: note: ‘stream’ declared here
2023-09-08T19:40:00,691    1520 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2023-09-08T19:40:00,692         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:00,692   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T19:40:00,693   ./base/sbml/math/ASTBase.cpp:1532:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,694    1532 |   if (&stream == NULL) return;
2023-09-08T19:40:00,695         |               ^
2023-09-08T19:40:00,695   ./base/sbml/math/ASTBase.cpp:1530:49: note: ‘stream’ declared here
2023-09-08T19:40:00,696    1530 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2023-09-08T19:40:00,697         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:00,714   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T19:40:00,715   ./base/sbml/math/ASTBase.cpp:1812:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:40:00,715    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:00,716         |                ^
2023-09-08T19:40:00,717   ./base/sbml/math/ASTBase.cpp:1809:60: note: ‘element’ declared here
2023-09-08T19:40:00,717    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:40:00,718         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:40:00,718   ./base/sbml/math/ASTBase.cpp:1812:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:00,719    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:00,720         |                                   ^
2023-09-08T19:40:00,720   ./base/sbml/math/ASTBase.cpp:1809:36: note: ‘stream’ declared here
2023-09-08T19:40:00,721    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:40:00,721         |                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:01,350   ./base/sbml/math/ASTBase.cpp:1812:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,351    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:01,351         |                                   ^
2023-09-08T19:40:01,352   ./base/sbml/math/ASTBase.cpp:1812:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,352    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:01,353         |                ^
2023-09-08T19:40:01,376   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T19:40:01,377   ./base/sbml/math/ASTBase.cpp:1498:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,377    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:01,378         |                 ^
2023-09-08T19:40:01,378   ./base/sbml/math/ASTBase.cpp:1498:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,379    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:01,380         |                                      ^
2023-09-08T19:40:01,380   ./base/sbml/math/ASTBase.cpp:1498:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,381    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:01,381         |                                              ^
2023-09-08T19:40:01,382   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T19:40:01,383   ./base/sbml/math/ASTBase.cpp:1511:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,383    1511 |   if (&stream == NULL) return;
2023-09-08T19:40:01,384         |   ^~
2023-09-08T19:40:01,384   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T19:40:01,385   ./base/sbml/math/ASTBase.cpp:1522:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,386    1522 |   if (&stream == NULL) return;
2023-09-08T19:40:01,386         |   ^~
2023-09-08T19:40:01,387   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T19:40:01,387   ./base/sbml/math/ASTBase.cpp:1532:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,388    1532 |   if (&stream == NULL) return;
2023-09-08T19:40:01,389         |   ^~
2023-09-08T19:40:01,399   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T19:40:01,400   ./base/sbml/math/ASTBase.cpp:1467:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:01,400    1467 |   if (&stream == NULL) return;
2023-09-08T19:40:01,401         |   ^~
2023-09-08T19:40:08,284   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:08,285   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:08,285     326 |   if (&stream == NULL) return;
2023-09-08T19:40:08,286         |               ^
2023-09-08T19:40:08,286   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2023-09-08T19:40:08,287     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:08,287         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:08,706   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:08,707     326 |   if (&stream == NULL) return;
2023-09-08T19:40:08,707         |   ^~
2023-09-08T19:40:12,304   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:40:12,305                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:12,305                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:12,306                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:40:12,306                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2023-09-08T19:40:12,307   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:12,308      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:12,309         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:12,309   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:12,310                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:12,311                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:12,311                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:12,312                    from ./base//sbml/math/ASTCSymbol.h:42,
2023-09-08T19:40:12,313                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2023-09-08T19:40:12,314   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:12,314     117 |     struct unary_function
2023-09-08T19:40:12,315         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:17,066   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:17,066   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:17,067      54 |   if (&s == NULL) return s;
2023-09-08T19:40:17,068         |          ^
2023-09-08T19:40:17,068   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:17,069      52 | trim (const string& s)
2023-09-08T19:40:17,070         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:17,516   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:17,517      54 |   if (&s == NULL) return s;
2023-09-08T19:40:17,518         |   ^~
2023-09-08T19:40:20,681   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:20,683   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:20,683      54 |   if (&s == NULL) return s;
2023-09-08T19:40:20,684         |          ^
2023-09-08T19:40:20,684   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:20,685      52 | trim (const string& s)
2023-09-08T19:40:20,685         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:20,703   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:20,704   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:20,704     273 |   if (&stream == NULL) return;
2023-09-08T19:40:20,705         |               ^
2023-09-08T19:40:20,705   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2023-09-08T19:40:20,706     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:20,707         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:21,142   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:21,143   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:21,143      54 |   if (&s == NULL) return s;
2023-09-08T19:40:21,144         |   ^~
2023-09-08T19:40:21,146   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:21,146   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:21,147     273 |   if (&stream == NULL) return;
2023-09-08T19:40:21,148         |   ^~
2023-09-08T19:40:24,533   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:24,533   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:24,534      54 |   if (&s == NULL) return s;
2023-09-08T19:40:24,535         |          ^
2023-09-08T19:40:24,535   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:24,536      52 | trim (const string& s)
2023-09-08T19:40:24,537         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:24,981   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:24,982      54 |   if (&s == NULL) return s;
2023-09-08T19:40:24,982         |   ^~
2023-09-08T19:40:28,030   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:28,030   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:28,031     216 |   if (&stream == NULL) return;
2023-09-08T19:40:28,032         |               ^
2023-09-08T19:40:28,032   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2023-09-08T19:40:28,033     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:28,034         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:28,448   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:28,449     216 |   if (&stream == NULL) return;
2023-09-08T19:40:28,450         |   ^~
2023-09-08T19:40:31,164   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:31,165   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:31,166      54 |   if (&s == NULL) return s;
2023-09-08T19:40:31,166         |          ^
2023-09-08T19:40:31,167   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:31,167      52 | trim (const string& s)
2023-09-08T19:40:31,168         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:31,612   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:31,613      54 |   if (&s == NULL) return s;
2023-09-08T19:40:31,613         |   ^~
2023-09-08T19:40:34,754   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2023-09-08T19:40:34,755   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:40:34,756     116 |   if (&(units) == NULL)
2023-09-08T19:40:34,756         |                ^
2023-09-08T19:40:34,757   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2023-09-08T19:40:34,758     114 | ASTCnBase::setUnits(const std::string& units)
2023-09-08T19:40:34,758         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:40:35,192   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:35,193     116 |   if (&(units) == NULL)
2023-09-08T19:40:35,194         |   ^~
2023-09-08T19:40:51,457   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:51,458   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:51,459     179 |   if (&stream == NULL) return;
2023-09-08T19:40:51,459         |               ^
2023-09-08T19:40:51,460   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2023-09-08T19:40:51,461     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:51,462         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:51,861   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:51,862     179 |   if (&stream == NULL) return;
2023-09-08T19:40:51,863         |   ^~
2023-09-08T19:40:55,158   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:40:55,159                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:55,160                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:55,160                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:40:55,161                    from ./base/sbml/math/ASTFunction.cpp:38:
2023-09-08T19:40:55,162   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:55,162      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:55,163         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:55,163   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:55,164                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:55,165                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:55,165                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:55,166                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:40:55,167                    from ./base/sbml/math/ASTFunction.cpp:36:
2023-09-08T19:40:55,167   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:55,168     117 |     struct unary_function
2023-09-08T19:40:55,169         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:55,464   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:55,465   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:55,465     148 |   if (&s == NULL) return s;
2023-09-08T19:40:55,466         |          ^
2023-09-08T19:40:55,466   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2023-09-08T19:40:55,467     146 | trim (const string& s)
2023-09-08T19:40:55,467         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:56,293   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:56,293     148 |   if (&s == NULL) return s;
2023-09-08T19:40:56,294         |   ^~
2023-09-08T19:41:04,074   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2023-09-08T19:41:04,074   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:04,075     349 |   if (&stream == NULL) return;
2023-09-08T19:41:04,075         |               ^
2023-09-08T19:41:04,076   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2023-09-08T19:41:04,077     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2023-09-08T19:41:04,077         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:04,584   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:04,584     349 |   if (&stream == NULL) return;
2023-09-08T19:41:04,585         |   ^~
2023-09-08T19:41:07,842   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:07,843   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:07,844     324 |   if (&stream == NULL) return;
2023-09-08T19:41:07,844         |               ^
2023-09-08T19:41:07,845   ./base/sbml/math/ASTLambdaFunctionNode.cpp:322:47: note: ‘stream’ declared here
2023-09-08T19:41:07,846     322 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:07,846         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:08,292   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:08,292     324 |   if (&stream == NULL) return;
2023-09-08T19:41:08,293         |   ^~
2023-09-08T19:41:11,061   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:11,062   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:11,062     373 |   if (&stream == NULL) return;
2023-09-08T19:41:11,063         |               ^
2023-09-08T19:41:11,064   ./base/sbml/math/ASTNaryFunctionNode.cpp:371:45: note: ‘stream’ declared here
2023-09-08T19:41:11,065     371 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:11,065         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:11,500   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:11,500     373 |   if (&stream == NULL) return;
2023-09-08T19:41:11,501         |   ^~
2023-09-08T19:41:15,307   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:41:15,308                    from ./base//sbml/Model.h:426,
2023-09-08T19:41:15,309                    from ./base/sbml/math/ASTNode.cpp:41:
2023-09-08T19:41:15,310   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:15,311      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:15,311         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:15,312   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:15,312                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:15,313                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:15,313                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:15,314                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:41:15,314                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:41:15,315                    from ./base/sbml/math/ASTNode.cpp:34:
2023-09-08T19:41:15,315   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:15,316     117 |     struct unary_function
2023-09-08T19:41:15,316         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:15,665   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:15,666     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2023-09-08T19:41:15,667         |                                       ^~~~~~~~~~~~~~
2023-09-08T19:41:15,667   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:15,668     117 |     struct unary_function
2023-09-08T19:41:15,668         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:25,384   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:41:25,384                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:41:25,385                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:41:25,386                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:41:25,386                    from ./base/sbml/math/ASTNumber.cpp:38:
2023-09-08T19:41:25,387   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:25,388      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:25,389         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:25,389   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:25,390                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:25,391                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:25,392                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:25,392                    from ./base//sbml/math/ASTNumber.h:42,
2023-09-08T19:41:25,393                    from ./base/sbml/math/ASTNumber.cpp:36:
2023-09-08T19:41:25,394   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:25,394     117 |     struct unary_function
2023-09-08T19:41:25,395         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:31,729   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:31,729   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:31,729     714 |   if (&stream == NULL) return;
2023-09-08T19:41:31,730         |               ^
2023-09-08T19:41:31,731   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2023-09-08T19:41:31,731     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:31,732         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:32,186   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:32,186     714 |   if (&stream == NULL) return;
2023-09-08T19:41:32,187         |   ^~
2023-09-08T19:41:35,242   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:35,243   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:35,244     157 |   if (&stream == NULL) return;
2023-09-08T19:41:35,244         |               ^
2023-09-08T19:41:35,245   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2023-09-08T19:41:35,245     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:35,246         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:35,651   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:35,652     157 |   if (&stream == NULL) return;
2023-09-08T19:41:35,652         |   ^~
2023-09-08T19:41:38,187   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:38,187   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:38,188     255 |   if (&stream == NULL) return;
2023-09-08T19:41:38,188         |               ^
2023-09-08T19:41:38,189   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2023-09-08T19:41:38,190     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:38,190         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:38,621   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:38,622     255 |   if (&stream == NULL) return;
2023-09-08T19:41:38,623         |   ^~
2023-09-08T19:41:42,490   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:41:42,491                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:41:42,492                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:41:42,493                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:41:42,493                    from ./base/sbml/math/ASTTypes.cpp:38:
2023-09-08T19:41:42,494   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:42,495      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:42,496         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:42,496   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:42,497                    from ./base//sbml/math/ASTTypes.h:183,
2023-09-08T19:41:42,498                    from ./base/sbml/math/ASTTypes.cpp:36:
2023-09-08T19:41:42,498   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:42,499     117 |     struct unary_function
2023-09-08T19:41:42,500         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:42,796   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T19:41:42,797   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:41:42,798     439 |   if (&name == NULL)
2023-09-08T19:41:42,799         |             ^
2023-09-08T19:41:42,799   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2023-09-08T19:41:42,800     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2023-09-08T19:41:42,801         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:41:42,802   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T19:41:42,803   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:41:42,804     465 |   if (&name == NULL)
2023-09-08T19:41:42,804         |             ^
2023-09-08T19:41:42,805   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2023-09-08T19:41:42,805     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2023-09-08T19:41:42,806         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:41:43,271   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T19:41:43,272   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:43,273     439 |   if (&name == NULL)
2023-09-08T19:41:43,273         |   ^~
2023-09-08T19:41:43,274   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T19:41:43,274   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:43,275     465 |   if (&name == NULL)
2023-09-08T19:41:43,275         |   ^~
2023-09-08T19:41:45,710   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:45,710   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:45,711     192 |   if (&stream == NULL) return;
2023-09-08T19:41:45,711         |               ^
2023-09-08T19:41:45,712   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2023-09-08T19:41:45,713     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:45,714         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:46,121   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:46,121     192 |   if (&stream == NULL) return;
2023-09-08T19:41:46,122         |   ^~
2023-09-08T19:41:51,366   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:41:51,367                    from ./base//sbml/Model.h:426,
2023-09-08T19:41:51,368                    from L3Parser.ypp:78:
2023-09-08T19:41:51,369   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:51,369      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:51,370         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:51,371   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:51,371                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:51,372                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:51,373                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:51,373                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:41:51,374                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:41:51,375                    from ./base//sbml/math/L3Parser.h:37,
2023-09-08T19:41:51,375                    from L3Parser.ypp:77:
2023-09-08T19:41:51,376   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:51,376     117 |     struct unary_function
2023-09-08T19:41:51,377         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:00,527   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T19:42:00,528   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:42:00,529      90 |   if (&stream == NULL) return NULL;
2023-09-08T19:42:00,529         |               ^
2023-09-08T19:42:00,530   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2023-09-08T19:42:00,531      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2023-09-08T19:42:00,532         |             ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:42:00,532   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T19:42:00,533   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:42:00,534     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T19:42:00,534         |                               ^
2023-09-08T19:42:00,535   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2023-09-08T19:42:00,535     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T19:42:00,536         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:42:00,970   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T19:42:00,970   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:00,971      90 |   if (&stream == NULL) return NULL;
2023-09-08T19:42:00,972         |   ^~
2023-09-08T19:42:00,972   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T19:42:00,973   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:00,973     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T19:42:00,974         |                               ^
2023-09-08T19:42:04,711   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:04,712                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:04,713                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:04,714                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:04,714                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:04,715                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:42:04,716                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2023-09-08T19:42:04,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:04,717      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:04,718         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:04,719   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:04,720                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:42:04,720                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:42:04,721                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:42:04,722   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:04,722     117 |     struct unary_function
2023-09-08T19:42:04,723         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:10,398   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:10,399                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:10,399                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:10,400                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:10,401                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2023-09-08T19:42:10,402                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2023-09-08T19:42:10,402   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:10,403      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:10,404         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:10,405   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:10,405                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:10,406                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:10,406                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:10,407                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:10,407                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2023-09-08T19:42:10,408   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:10,408     117 |     struct unary_function
2023-09-08T19:42:10,409         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:22,746   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:22,747                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:22,747                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:22,748                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:22,748                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:68,
2023-09-08T19:42:22,749                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2023-09-08T19:42:22,749   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:22,750      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:22,750         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:22,751   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:22,751                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:22,752                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:22,753                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:22,753                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:22,754                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2023-09-08T19:42:22,755   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:22,755     117 |     struct unary_function
2023-09-08T19:42:22,756         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:30,695   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:30,696                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:30,696                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:30,697                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:30,698                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:65,
2023-09-08T19:42:30,698                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2023-09-08T19:42:30,699   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:30,699      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:30,700         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:30,701   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:30,701                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:30,702                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:30,703                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:30,704                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:30,704                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2023-09-08T19:42:30,705   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:30,706     117 |     struct unary_function
2023-09-08T19:42:30,706         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:31,127   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2023-09-08T19:42:31,128   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:31,129     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:31,129         |                  ^
2023-09-08T19:42:31,130   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2023-09-08T19:42:31,130     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2023-09-08T19:42:31,131         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:31,131   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T19:42:31,132     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:31,132         |                                             ^
2023-09-08T19:42:31,133   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2023-09-08T19:42:31,133     451 |                               const std::string& wrongattribute)
2023-09-08T19:42:31,134         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:42:31,703   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:31,703     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:31,704         |                  ^
2023-09-08T19:42:31,705   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:31,705     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:31,706         |                                             ^
2023-09-08T19:42:36,535   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:36,536                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:36,537                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:36,538                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:36,538                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:36,539                    from ./base//sbml/packages/comp/sbml/CompBase.h:43,
2023-09-08T19:42:36,540                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2023-09-08T19:42:36,541   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:36,541      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:36,542         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:36,542   In file included from /usr/include/c++/12/bits/stl_tree.h:65,
2023-09-08T19:42:36,543                    from /usr/include/c++/12/set:60,
2023-09-08T19:42:36,544                    from ./base//sbml/packages/comp/sbml/CompBase.h:40:
2023-09-08T19:42:36,545   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:36,545     117 |     struct unary_function
2023-09-08T19:42:36,546         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:37,018   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:42:37,019   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:42:37,019     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:37,020         |                   ^
2023-09-08T19:42:37,021   ./base/sbml/packages/comp/sbml/CompBase.cpp:150:48: note: ‘attributes’ declared here
2023-09-08T19:42:37,022     150 | CompBase::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:42:37,022         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:42:37,023   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:42:37,023     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:37,024         |                                                  ^
2023-09-08T19:42:37,025   ./base/sbml/packages/comp/sbml/CompBase.cpp:151:53: note: ‘expectedAttributes’ declared here
2023-09-08T19:42:37,025     151 |                           const ExpectedAttributes& expectedAttributes)
2023-09-08T19:42:37,026         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:42:37,026   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T19:42:37,027   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:37,028     199 |   if(&element == NULL) return;
2023-09-08T19:42:37,028         |               ^
2023-09-08T19:42:37,029   ./base/sbml/packages/comp/sbml/CompBase.cpp:197:48: note: ‘element’ declared here
2023-09-08T19:42:37,029     197 | CompBase::logUnknownElement(const std::string &element)
2023-09-08T19:42:37,030         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:37,033   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:37,033   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:37,034     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,035         |                  ^
2023-09-08T19:42:37,036   ./base/sbml/packages/comp/sbml/CompBase.cpp:222:50: note: ‘attribute’ declared here
2023-09-08T19:42:37,037     222 | CompBase::logUnknownAttribute(const std::string &attribute,
2023-09-08T19:42:37,037         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:37,038   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:37,039     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,040         |                                      ^
2023-09-08T19:42:37,040   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘element’ declared here
2023-09-08T19:42:37,041     223 |                               const std::string& element)
2023-09-08T19:42:37,042         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:37,043   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T19:42:37,044   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:37,045     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,046         |                  ^
2023-09-08T19:42:37,046   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘attribute’ declared here
2023-09-08T19:42:37,047     257 | CompBase::logEmptyString(const std::string &attribute,
2023-09-08T19:42:37,048         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:37,049   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:37,050     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,050         |                                      ^
2023-09-08T19:42:37,051   ./base/sbml/packages/comp/sbml/CompBase.cpp:258:45: note: ‘element’ declared here
2023-09-08T19:42:37,051     258 |                          const std::string& element)
2023-09-08T19:42:37,052         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:37,053   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:42:37,053   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:37,054     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:37,055         |                  ^
2023-09-08T19:42:37,055   ./base/sbml/packages/comp/sbml/CompBase.cpp:280:43: note: ‘attribute’ declared here
2023-09-08T19:42:37,056     280 | CompBase::logInvalidId(const std::string& attribute,
2023-09-08T19:42:37,056         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:37,057   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T19:42:37,058     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:37,058         |                                             ^
2023-09-08T19:42:37,059   ./base/sbml/packages/comp/sbml/CompBase.cpp:281:43: note: ‘wrongattribute’ declared here
2023-09-08T19:42:37,060     281 |                        const std::string& wrongattribute,
2023-09-08T19:42:37,060         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:42:37,074   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:37,075   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:37,076     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,076         |                  ^
2023-09-08T19:42:37,077   ./base/sbml/packages/comp/sbml/CompBase.cpp:379:50: note: ‘attribute’ declared here
2023-09-08T19:42:37,078     379 | CompBase::logMissingAttribute(const std::string& attribute,
2023-09-08T19:42:37,079         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:37,080   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:37,080     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,081         |                                      ^
2023-09-08T19:42:37,082   ./base/sbml/packages/comp/sbml/CompBase.cpp:380:50: note: ‘element’ declared here
2023-09-08T19:42:37,082     380 |                               const std::string& element)
2023-09-08T19:42:37,083         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:37,774   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T19:42:37,775   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,776     199 |   if(&element == NULL) return;
2023-09-08T19:42:37,776         |   ^~
2023-09-08T19:42:37,777   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:37,778   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,779     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,779         |                  ^
2023-09-08T19:42:37,780   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,780     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,781         |                                      ^
2023-09-08T19:42:37,781   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T19:42:37,782   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,782     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,783         |                  ^
2023-09-08T19:42:37,783   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,784     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,784         |                                      ^
2023-09-08T19:42:37,785   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:42:37,785   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,786     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:37,787         |                  ^
2023-09-08T19:42:37,787   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,788     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:37,789         |                                             ^
2023-09-08T19:42:37,790   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:37,791   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,791     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,792         |                  ^
2023-09-08T19:42:37,793   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,793     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:37,794         |                                      ^
2023-09-08T19:42:37,795   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:42:37,795   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,796     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:37,797         |                   ^
2023-09-08T19:42:37,797   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:37,798     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:37,799         |                                                  ^
2023-09-08T19:42:43,635   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:43,635                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:43,636                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:43,637                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:43,637                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:43,638                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:42:43,638                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2023-09-08T19:42:43,639   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:43,639      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:43,640         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:43,640   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:43,641                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:43,641                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:43,641                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:43,642                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:43,642                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:42:43,643                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2023-09-08T19:42:43,643   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:43,644     117 |     struct unary_function
2023-09-08T19:42:43,644         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:49,553   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:49,554                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:49,554                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:49,555                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:49,555                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:49,556                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:42:49,557                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2023-09-08T19:42:49,557   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:49,558      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:49,559         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:49,559   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:49,560                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:49,560                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:49,561                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:49,562                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:49,562                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:42:49,563                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2023-09-08T19:42:49,563   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:49,564     117 |     struct unary_function
2023-09-08T19:42:49,565         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:58,992   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:42:58,993                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:58,993                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:58,994                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:58,994                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:58,995                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:42:58,996                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2023-09-08T19:42:58,996   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:58,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:58,997         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:58,998   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:58,998                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:58,999                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:58,999                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:59,000                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:59,000                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:42:59,001                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2023-09-08T19:42:59,001   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:59,001     117 |     struct unary_function
2023-09-08T19:42:59,002         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:59,398   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2023-09-08T19:42:59,399   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:42:59,400     118 |   if (&(sid) != NULL)
2023-09-08T19:42:59,400         |              ^
2023-09-08T19:42:59,401   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2023-09-08T19:42:59,401     113 | ListOfDeletions::remove (const std::string& sid)
2023-09-08T19:42:59,402         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:42:59,958   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:59,959     118 |   if (&(sid) != NULL)
2023-09-08T19:42:59,959         |   ^~
2023-09-08T19:43:03,987   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:03,988                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:03,988                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:03,989                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:03,990                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:03,991                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:03,991                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2023-09-08T19:43:03,992   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:03,993      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:03,994         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:03,994   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:03,995                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:03,996                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:03,996                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:03,997                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:03,997                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:03,998                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2023-09-08T19:43:03,999   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:04,000     117 |     struct unary_function
2023-09-08T19:43:04,000         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:08,997   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:08,997                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:08,998                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:08,999                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:08,999                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:09,000                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:09,000                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2023-09-08T19:43:09,001   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:09,001      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:09,002         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:09,003   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:09,003                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:09,004                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:09,004                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:09,005                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:09,005                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:09,006                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2023-09-08T19:43:09,006   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:09,007     117 |     struct unary_function
2023-09-08T19:43:09,007         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:14,006   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:14,007                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:14,007                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:14,008                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:14,009                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:14,009                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:14,010                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2023-09-08T19:43:14,011   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:14,012      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:14,012         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:14,013   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:14,014                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:14,015                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:14,015                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:14,016                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:14,016                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:14,017                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2023-09-08T19:43:14,018   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:14,018     117 |     struct unary_function
2023-09-08T19:43:14,019         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:14,403   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2023-09-08T19:43:14,404   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:43:14,405     113 |   if (&(sid) != NULL)
2023-09-08T19:43:14,405         |              ^
2023-09-08T19:43:14,406   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2023-09-08T19:43:14,407     108 | ListOfPorts::remove (const std::string& sid)
2023-09-08T19:43:14,408         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:43:14,962   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:43:14,963     113 |   if (&(sid) != NULL)
2023-09-08T19:43:14,964         |   ^~
2023-09-08T19:43:18,962   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:18,963                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:18,964                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:18,964                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:18,965                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:18,965                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:18,966                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2023-09-08T19:43:18,967   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:18,967      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:18,968         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:18,968   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:18,969                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:18,969                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:18,970                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:18,971                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:18,971                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:18,972                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2023-09-08T19:43:18,972   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:18,973     117 |     struct unary_function
2023-09-08T19:43:18,974         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:23,619   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:23,620                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:23,620                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:23,621                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:23,622                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:23,622                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:23,623                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2023-09-08T19:43:23,624   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:23,624      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:23,625         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:23,626   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:23,626                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:23,627                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:23,627                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:23,628                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:23,629                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:23,629                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2023-09-08T19:43:23,630   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:23,631     117 |     struct unary_function
2023-09-08T19:43:23,631         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:24,031   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2023-09-08T19:43:24,032   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:43:24,033     113 |   if (&(sid) != NULL)
2023-09-08T19:43:24,033         |              ^
2023-09-08T19:43:24,034   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2023-09-08T19:43:24,034     108 | ListOfSubmodels::remove (const std::string& sid)
2023-09-08T19:43:24,035         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:43:24,591   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:43:24,592     113 |   if (&(sid) != NULL)
2023-09-08T19:43:24,592         |   ^~
2023-09-08T19:43:28,634   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:28,634                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:28,635                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:28,635                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:28,636                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:28,637                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:28,637                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2023-09-08T19:43:28,638   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:28,638      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:28,639         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:28,640   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:28,640                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:28,641                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:28,642                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:28,642                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:28,643                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:28,644                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2023-09-08T19:43:28,644   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:28,645     117 |     struct unary_function
2023-09-08T19:43:28,646         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:33,421   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:33,422                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:33,422                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:33,423                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:33,424                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:33,424                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:33,425                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2023-09-08T19:43:33,425   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:33,426      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:33,427         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:33,427   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:33,428                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:33,429                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:33,430                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:33,430                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:33,431                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:33,432                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2023-09-08T19:43:33,433   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:33,433     117 |     struct unary_function
2023-09-08T19:43:33,434         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:39,038   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:56,
2023-09-08T19:43:39,038                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2023-09-08T19:43:39,039   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:39,039      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:39,040         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:39,041   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:39,041                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:39,042                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:39,042                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:39,043                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:39,043                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:39,044                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2023-09-08T19:43:39,045   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:39,045     117 |     struct unary_function
2023-09-08T19:43:39,046         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:44,308   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:44,308                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:44,309                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:44,310                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:44,310                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:44,311                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:44,312                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2023-09-08T19:43:44,313   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:44,314      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:44,314         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:44,315   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:44,316                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:44,316                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:44,317                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:44,318                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:44,318                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:44,319                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2023-09-08T19:43:44,320   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:44,320     117 |     struct unary_function
2023-09-08T19:43:44,321         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:51,562   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:51,563                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:51,564                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:51,564                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:51,565                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:51,566                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:51,567                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2023-09-08T19:43:51,567   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:51,568      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:51,568         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:51,569   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:51,569                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:51,570                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:51,570                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:51,571                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:51,571                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:51,572                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2023-09-08T19:43:51,572   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:51,572     117 |     struct unary_function
2023-09-08T19:43:51,573         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:58,851   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:43:58,852                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:58,852                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:58,853                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:58,853                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:58,854                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:58,855                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2023-09-08T19:43:58,855   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:58,856      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:58,857         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:58,857   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:58,858                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:58,859                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:58,859                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:58,860                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:58,861                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:58,862                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2023-09-08T19:43:58,862   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:58,863     117 |     struct unary_function
2023-09-08T19:43:58,863         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:07,872   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:44:07,872                    from ./base//sbml/RateRule.h:113,
2023-09-08T19:44:07,873                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2023-09-08T19:44:07,874   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:07,874      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:07,875         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:07,876   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:07,876                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:44:07,877                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:44:07,878                    from /usr/include/c++/12/ios:42,
2023-09-08T19:44:07,879                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:44:07,879                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:44:07,880                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2023-09-08T19:44:07,881   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:07,882     117 |     struct unary_function
2023-09-08T19:44:07,882         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:21,131   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:44:21,132                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:21,132                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:21,133                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:44:21,133                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2023-09-08T19:44:21,134                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:150,
2023-09-08T19:44:21,134                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2023-09-08T19:44:21,135   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:21,136      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:21,136         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:21,137   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:21,137                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:44:21,138                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:44:21,138                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:149:
2023-09-08T19:44:21,139   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:21,139     117 |     struct unary_function
2023-09-08T19:44:21,140         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:21,732   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:44:21,733   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:44:21,734     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T19:44:21,735         |              ^
2023-09-08T19:44:21,735   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:119:54: note: ‘props’ declared here
2023-09-08T19:44:21,736     119 |                         (const ConversionProperties &props) const
2023-09-08T19:44:21,737         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:44:22,670   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:22,670     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T19:44:22,671         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:44:30,103   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:44:30,104                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:30,104                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:30,105                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2023-09-08T19:44:30,106   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:30,106      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:30,107         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:30,108   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:30,108                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2023-09-08T19:44:30,109                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2023-09-08T19:44:30,110   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:30,111     117 |     struct unary_function
2023-09-08T19:44:30,111         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:30,490   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T19:44:30,490   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:30,491      54 |   if (&orig == NULL)
2023-09-08T19:44:30,491         |             ^
2023-09-08T19:44:30,492   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2023-09-08T19:44:30,492      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2023-09-08T19:44:30,493         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:30,493   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2023-09-08T19:44:30,494   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:30,495      80 |   if (&rhs == NULL)
2023-09-08T19:44:30,495         |            ^
2023-09-08T19:44:30,496   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2023-09-08T19:44:30,496      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2023-09-08T19:44:30,497         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:31,044   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:31,044      80 |   if (&rhs == NULL)
2023-09-08T19:44:31,045         |   ^~
2023-09-08T19:44:31,053   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T19:44:31,054   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:31,055      54 |   if (&orig == NULL)
2023-09-08T19:44:31,056         |   ^~
2023-09-08T19:44:35,316   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:44:35,317                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:35,318                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:35,318                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2023-09-08T19:44:35,319   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:35,320      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:35,321         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:35,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:35,322                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2023-09-08T19:44:35,323                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2023-09-08T19:44:35,323   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:35,324     117 |     struct unary_function
2023-09-08T19:44:35,325         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:35,610   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T19:44:35,610   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:35,611      50 |   if (&orig == NULL)
2023-09-08T19:44:35,612         |             ^
2023-09-08T19:44:35,613   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2023-09-08T19:44:35,614      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2023-09-08T19:44:35,615         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:35,615   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T19:44:35,616   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:35,616      76 |   if (&rhs == NULL)
2023-09-08T19:44:35,617         |            ^
2023-09-08T19:44:35,617   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2023-09-08T19:44:35,618      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2023-09-08T19:44:35,619         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:36,084   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T19:44:36,084   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:36,085      50 |   if (&orig == NULL)
2023-09-08T19:44:36,085         |   ^~
2023-09-08T19:44:36,086   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T19:44:36,086   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:36,087      76 |   if (&rhs == NULL)
2023-09-08T19:44:36,088         |   ^~
2023-09-08T19:44:39,332   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:44:39,332                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:39,333                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:39,334                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2023-09-08T19:44:39,334   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:39,335      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:39,336         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:39,336   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T19:44:39,337                    from /usr/include/c++/12/vector:66,
2023-09-08T19:44:39,337                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2023-09-08T19:44:39,338   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:39,339     117 |     struct unary_function
2023-09-08T19:44:39,339         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:43,645   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:44:43,646                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:43,646                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:43,647                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2023-09-08T19:44:43,648   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:43,648      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:43,649         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:43,650   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:43,650                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2023-09-08T19:44:43,651                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2023-09-08T19:44:43,652   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:43,652     117 |     struct unary_function
2023-09-08T19:44:43,653         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:43,943   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T19:44:43,944   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:43,945      53 |   if (&orig == NULL)
2023-09-08T19:44:43,945         |             ^
2023-09-08T19:44:43,946   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2023-09-08T19:44:43,946      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2023-09-08T19:44:43,947         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:43,948   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T19:44:43,948   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:43,949      83 |   if (&rhs == NULL)
2023-09-08T19:44:43,949         |            ^
2023-09-08T19:44:43,950   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2023-09-08T19:44:43,951      81 | SBMLUri::operator=(const SBMLUri& rhs)
2023-09-08T19:44:43,951         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:43,963   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2023-09-08T19:44:43,963   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T19:44:43,964     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2023-09-08T19:44:43,965         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:44:43,965   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T19:44:43,966    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T19:44:43,967         |     ^~~~~~~
2023-09-08T19:44:43,972   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T19:44:43,973     181 |      ptr_fun<int,int>(tolower)); // host is icase
2023-09-08T19:44:43,973         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:44:43,974   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T19:44:43,975    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T19:44:43,975         |     ^~~~~~~
2023-09-08T19:44:44,525   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T19:44:44,526   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:44,527      53 |   if (&orig == NULL)
2023-09-08T19:44:44,527         |   ^~
2023-09-08T19:44:44,528   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T19:44:44,529   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:44,529      83 |   if (&rhs == NULL)
2023-09-08T19:44:44,530         |   ^~
2023-09-08T19:44:48,989   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:44:48,990                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:44:48,991                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:44:48,992                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2023-09-08T19:44:48,992                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2023-09-08T19:44:48,993   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:48,994      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:48,995         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:48,995   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:48,996                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:44:48,996                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2023-09-08T19:44:48,997                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2023-09-08T19:44:48,997   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:48,998     117 |     struct unary_function
2023-09-08T19:44:48,999         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:05,229   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:05,229                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:05,230                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:05,230                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2023-09-08T19:45:05,231                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2023-09-08T19:45:05,232   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:05,232      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:05,233         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:05,234   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:05,234                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:45:05,235                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2023-09-08T19:45:05,235                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2023-09-08T19:45:05,236   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:05,237     117 |     struct unary_function
2023-09-08T19:45:05,238         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:09,497   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:09,497                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:09,498                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:09,499                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2023-09-08T19:45:09,500                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2023-09-08T19:45:09,500   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:09,501      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:09,501         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:09,502   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:09,503                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:45:09,503                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2023-09-08T19:45:09,504                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2023-09-08T19:45:09,505   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:09,505     117 |     struct unary_function
2023-09-08T19:45:09,506         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:13,787   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:13,788                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:13,789                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:13,790                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2023-09-08T19:45:13,790   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:13,791      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:13,791         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:13,792   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:45:13,792                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2023-09-08T19:45:13,793   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:13,794     117 |     struct unary_function
2023-09-08T19:45:13,794         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:14,628   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:14,628      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:45:14,629         |                       ^~~~~~~~~~~~~~
2023-09-08T19:45:14,630   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:14,630     117 |     struct unary_function
2023-09-08T19:45:14,631         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:14,842   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:45:14,843   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:45:14,844     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T19:45:14,844         |            ^
2023-09-08T19:45:14,845   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2023-09-08T19:45:14,846     325 |   virtual bool visit (const SBase &x)
2023-09-08T19:45:14,847         |                       ~~~~~~~~~~~~~^
2023-09-08T19:45:14,864   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T19:45:14,865   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:45:14,865     481 |   if (&d == NULL) return 0;
2023-09-08T19:45:14,866         |          ^
2023-09-08T19:45:14,867   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2023-09-08T19:45:14,868     479 | CompValidator::validate (const SBMLDocument& d)
2023-09-08T19:45:14,869         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:45:14,882   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T19:45:14,883   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:45:14,884     610 |   if (&filename == NULL) return 0;
2023-09-08T19:45:14,884         |                 ^
2023-09-08T19:45:14,885   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2023-09-08T19:45:14,886     608 | CompValidator::validate (const std::string& filename)
2023-09-08T19:45:14,886         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:45:15,838   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:45:15,839   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:15,840     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T19:45:15,840         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:45:15,860   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T19:45:15,860   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:15,861     481 |   if (&d == NULL) return 0;
2023-09-08T19:45:15,862         |   ^~
2023-09-08T19:45:15,894   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T19:45:15,894   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:15,895     610 |   if (&filename == NULL) return 0;
2023-09-08T19:45:15,896         |   ^~
2023-09-08T19:45:21,273   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:45:21,273                    from ./base//sbml/Model.h:426,
2023-09-08T19:45:21,274                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2023-09-08T19:45:21,275   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:21,275      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:21,276         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:21,276   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:21,277                    from ./base//sbml/Model.h:424:
2023-09-08T19:45:21,277   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:21,278     117 |     struct unary_function
2023-09-08T19:45:21,278         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:25,977   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:25,978                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:25,979                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:25,979                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2023-09-08T19:45:25,980   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:25,981      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:25,981         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:25,982   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:25,983                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:25,984   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:25,984     117 |     struct unary_function
2023-09-08T19:45:25,985         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:30,759   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:30,759                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:30,760                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:30,760                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T19:45:30,761                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2023-09-08T19:45:30,761   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:30,762      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:30,763         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:30,764   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:30,764                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2023-09-08T19:45:30,766   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:30,766     117 |     struct unary_function
2023-09-08T19:45:30,767         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:35,333   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:35,334                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:35,334                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:35,334                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2023-09-08T19:45:35,335   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:35,336      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:35,336         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:35,337   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:35,337                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:35,338   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:35,338     117 |     struct unary_function
2023-09-08T19:45:35,339         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:39,537   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:45:39,538                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:39,538                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:39,539                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2023-09-08T19:45:39,540   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:39,540      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:39,541         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:39,542   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:39,542                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:39,543   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:39,544     117 |     struct unary_function
2023-09-08T19:45:39,545         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:43,916   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:45:43,917                    from ./base//sbml/Model.h:426,
2023-09-08T19:45:43,918                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2023-09-08T19:45:43,919   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:43,919      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:43,920         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:43,921   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:43,921                    from ./base//sbml/Model.h:424:
2023-09-08T19:45:43,922   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:43,923     117 |     struct unary_function
2023-09-08T19:45:43,923         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:51,911   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:45:51,912                    from ./base//sbml/Model.h:426,
2023-09-08T19:45:51,912                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2023-09-08T19:45:51,913   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:51,914      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:51,916         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:51,917   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:51,917                    from ./base//sbml/Model.h:424:
2023-09-08T19:45:51,918   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:51,919     117 |     struct unary_function
2023-09-08T19:45:51,919         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:56,774   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:45:56,774                    from ./base//sbml/Model.h:426,
2023-09-08T19:45:56,775                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2023-09-08T19:45:56,775   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:56,776      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:56,777         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:56,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:56,778                    from ./base//sbml/Model.h:424:
2023-09-08T19:45:56,778   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:56,779     117 |     struct unary_function
2023-09-08T19:45:56,779         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:04,743   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:46:04,743                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:46:04,744                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:46:04,744                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T19:46:04,745                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2023-09-08T19:46:04,745                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2023-09-08T19:46:04,746   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:04,747      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:04,747         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:04,748   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:04,749                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:46:04,749                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:46:04,750                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:46:04,751                    from ./base//sbml/SBase.h:146,
2023-09-08T19:46:04,752                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2023-09-08T19:46:04,752   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:04,753     117 |     struct unary_function
2023-09-08T19:46:04,753         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:10,255   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:10,256                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:10,257                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2023-09-08T19:46:10,257   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:10,258      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:10,259         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:10,260   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:10,260                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:10,261   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:10,262     117 |     struct unary_function
2023-09-08T19:46:10,263         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:14,715   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:14,716                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:14,716                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2023-09-08T19:46:14,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:14,717      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:14,718         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:14,718   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:14,719                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:14,720   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:14,720     117 |     struct unary_function
2023-09-08T19:46:14,721         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:19,087   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:19,088                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:19,088                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2023-09-08T19:46:19,089   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:19,090      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:19,090         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:19,091   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:19,091                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:19,092   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:19,093     117 |     struct unary_function
2023-09-08T19:46:19,093         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:23,457   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:23,457                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:23,458                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2023-09-08T19:46:23,459   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:23,460      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:23,460         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:23,461   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:23,462                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:23,463   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:23,464     117 |     struct unary_function
2023-09-08T19:46:23,464         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:28,011   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:28,011                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:28,012                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2023-09-08T19:46:28,013   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:28,013      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:28,014         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:28,015   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:28,015                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:28,016   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:28,017     117 |     struct unary_function
2023-09-08T19:46:28,018         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:32,769   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:32,769                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:32,770                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2023-09-08T19:46:32,771   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:32,771      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:32,772         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:32,772   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:32,773                    from ./base//sbml/Model.h:424:
2023-09-08T19:46:32,773   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:32,774     117 |     struct unary_function
2023-09-08T19:46:32,775         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:38,388   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:38,388                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:46:38,389                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:46:38,390                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:46:38,390                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:46:38,391                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:46:38,391                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2023-09-08T19:46:38,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:38,392      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:38,393         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:38,394   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:38,395                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:38,395                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:46:38,396                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:46:38,397   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:38,397     117 |     struct unary_function
2023-09-08T19:46:38,398         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:38,813   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:38,813                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:46:38,814                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2023-09-08T19:46:38,815   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:38,816     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:38,816         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:38,817   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:38,818     117 |     struct unary_function
2023-09-08T19:46:38,818         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:38,822   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:38,823     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:38,824         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:38,825   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:38,825     117 |     struct unary_function
2023-09-08T19:46:38,826         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:38,842   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:46:38,843   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:38,844     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:38,845         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:38,845   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:38,846     117 |     struct unary_function
2023-09-08T19:46:38,846         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:44,045   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:44,046                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:44,046                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:43,
2023-09-08T19:46:44,047                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2023-09-08T19:46:44,047   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:44,048      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:44,049         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:44,049   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:44,050                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:44,050                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:46:44,051                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42:
2023-09-08T19:46:44,052   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:44,052     117 |     struct unary_function
2023-09-08T19:46:44,053         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:44,511   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:44,512                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T19:46:44,512   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:44,513     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:44,514         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:44,514   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:44,515     117 |     struct unary_function
2023-09-08T19:46:44,516         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:44,521   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:44,522     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:44,523         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:44,524   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:44,524     117 |     struct unary_function
2023-09-08T19:46:44,525         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:44,542   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:46:44,542   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:44,545     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:44,546         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:44,547   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:44,547     117 |     struct unary_function
2023-09-08T19:46:44,548         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:50,521   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:50,521                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:46:50,522                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:46:50,523                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:46:50,524                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:49,
2023-09-08T19:46:50,524                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2023-09-08T19:46:50,524   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:50,525      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:50,526         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:50,526   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:50,527                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:46:50,527                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:46:50,528                    from /usr/include/c++/12/ios:42,
2023-09-08T19:46:50,528                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:46:50,529                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2023-09-08T19:46:50,529   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:50,530     117 |     struct unary_function
2023-09-08T19:46:50,530         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:54,817   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:46:54,817                    from ./base//sbml/Model.h:426,
2023-09-08T19:46:54,818                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:45,
2023-09-08T19:46:54,818                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2023-09-08T19:46:54,819   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:54,820      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:54,821         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:54,821   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:54,822                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:54,823                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:46:54,824                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44:
2023-09-08T19:46:54,824   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:54,825     117 |     struct unary_function
2023-09-08T19:46:54,826         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:55,281   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:55,282                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2023-09-08T19:46:55,283   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:55,283     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:55,284         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:55,285   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:55,285     117 |     struct unary_function
2023-09-08T19:46:55,286         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:55,291   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:55,291     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:55,292         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:55,293   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:55,294     117 |     struct unary_function
2023-09-08T19:46:55,295         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:55,310   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:51:
2023-09-08T19:46:55,311   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:55,312     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:55,312         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:55,313   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:55,313     117 |     struct unary_function
2023-09-08T19:46:55,314         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:01,024   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2023-09-08T19:47:01,024                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2023-09-08T19:47:01,024   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:01,025      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:01,026         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:01,026   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:01,027                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:01,027                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:01,028                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:01,028                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:01,029                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:01,030                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2023-09-08T19:47:01,031   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:01,031     117 |     struct unary_function
2023-09-08T19:47:01,032         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:09,080   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2023-09-08T19:47:09,081                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2023-09-08T19:47:09,082   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:09,083      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:09,083         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:09,084   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:09,085                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:09,086                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:09,086                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:09,087                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:09,088                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:09,088                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2023-09-08T19:47:09,089   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:09,089     117 |     struct unary_function
2023-09-08T19:47:09,090         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:16,782   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:47,
2023-09-08T19:47:16,782                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2023-09-08T19:47:16,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:16,784      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:16,785         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:16,786   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:16,786                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:16,787                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:16,788                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:16,788                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:16,789                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:16,789                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2023-09-08T19:47:16,790   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:16,790     117 |     struct unary_function
2023-09-08T19:47:16,791         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:17,423   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:17,423     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:17,424         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:17,424   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:17,425     117 |     struct unary_function
2023-09-08T19:47:17,426         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:23,959   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:47,
2023-09-08T19:47:23,960                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2023-09-08T19:47:23,960   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:23,961      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:23,961         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:23,962   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:23,963                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:23,964                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:23,964                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:23,965                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:23,966                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:23,966                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2023-09-08T19:47:23,967   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:23,968     117 |     struct unary_function
2023-09-08T19:47:23,968         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:24,608   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:24,609     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:24,610         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:24,610   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:24,611     117 |     struct unary_function
2023-09-08T19:47:24,611         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:30,850   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2023-09-08T19:47:30,850                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2023-09-08T19:47:30,851   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:30,851      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:30,852         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:30,853   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:30,854                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:30,854                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:30,855                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:30,856                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:30,857                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:30,857                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2023-09-08T19:47:30,858   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:30,858     117 |     struct unary_function
2023-09-08T19:47:30,859         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:31,492   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2023-09-08T19:47:31,492   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:31,493     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:31,494         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:31,494   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:31,495     117 |     struct unary_function
2023-09-08T19:47:31,495         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:31,503   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:31,504     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:31,505         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:31,505   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:31,506     117 |     struct unary_function
2023-09-08T19:47:31,507         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,101   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:47:39,102                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:47:39,103                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:47:39,104                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:47:39,104                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:47:39,105                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:36,
2023-09-08T19:47:39,106                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2023-09-08T19:47:39,107   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:39,107      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:39,108         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:39,109   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:39,110                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:47:39,110                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:47:39,111                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35:
2023-09-08T19:47:39,111   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:39,112     117 |     struct unary_function
2023-09-08T19:47:39,113         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,482   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:39,482                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:47:39,483                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:47:39,484                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2023-09-08T19:47:39,484   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:39,485     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:39,486         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:39,487   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:39,487     117 |     struct unary_function
2023-09-08T19:47:39,488         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,492   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:39,493     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:39,493         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:39,494   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:39,494     117 |     struct unary_function
2023-09-08T19:47:39,495         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,512   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:47:39,513   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:39,513     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:39,514         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,514   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:39,515     117 |     struct unary_function
2023-09-08T19:47:39,516         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:39,524   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:47:39,525   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:47:39,526      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T19:47:39,527         |              ^
2023-09-08T19:47:39,527   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:96:70: note: ‘props’ declared here
2023-09-08T19:47:39,528      96 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:47:39,529         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:47:40,386   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:47:40,387      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T19:47:40,388         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:47:46,878   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:47:46,879                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:47:46,879                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:47:46,880                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:47:46,881                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T19:47:46,881                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:36,
2023-09-08T19:47:46,882                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2023-09-08T19:47:46,882   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:46,883      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:46,884         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:46,885   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:46,885                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:47:46,886                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:47:46,887                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35:
2023-09-08T19:47:46,888   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:46,888     117 |     struct unary_function
2023-09-08T19:47:46,889         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:47,257   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:47,258                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:47:47,259                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:47:47,259                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2023-09-08T19:47:47,260   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:47,261     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:47,261         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:47,262   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:47,262     117 |     struct unary_function
2023-09-08T19:47:47,263         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:47,267   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:47,268     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:47,268         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:47,269   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:47,270     117 |     struct unary_function
2023-09-08T19:47:47,270         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:47,287   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:47:47,288   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:47,288     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:47,289         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:47,289   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:47,290     117 |     struct unary_function
2023-09-08T19:47:47,291         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:47,299   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:47:47,300   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:47:47,300      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T19:47:47,301         |              ^
2023-09-08T19:47:47,302   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2023-09-08T19:47:47,303      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:47:47,303         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:47:48,121   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:47:48,122      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T19:47:48,123         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:47:53,343   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:47:53,343                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:47:53,344                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:47:53,345                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2023-09-08T19:47:53,346                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2023-09-08T19:47:53,346   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:53,347      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:53,347         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:53,348   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:53,348                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2023-09-08T19:47:53,349                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2023-09-08T19:47:53,349                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2023-09-08T19:47:53,350   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:53,350     117 |     struct unary_function
2023-09-08T19:47:53,351         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:54,007   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:54,008                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T19:47:54,009   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:54,009     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:54,010         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:54,011   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:54,012     117 |     struct unary_function
2023-09-08T19:47:54,012         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:54,017   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:54,018     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:54,018         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:54,019   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:54,020     117 |     struct unary_function
2023-09-08T19:47:54,021         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:57,929   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:47:57,929                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:47:57,930                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:47:57,931                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2023-09-08T19:47:57,931                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2023-09-08T19:47:57,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:57,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:57,933         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:57,934   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:57,934                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2023-09-08T19:47:57,935                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2023-09-08T19:47:57,936                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2023-09-08T19:47:57,936   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:57,937     117 |     struct unary_function
2023-09-08T19:47:57,938         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:01,836   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:48:01,837                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:01,837                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:01,838                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2023-09-08T19:48:01,838   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:01,839      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:01,839         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:01,840   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:48:01,840                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2023-09-08T19:48:01,841   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:01,842     117 |     struct unary_function
2023-09-08T19:48:01,842         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,511   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:02,511                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:02,512                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:48:02,513                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2023-09-08T19:48:02,513   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:02,514     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:02,514         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:02,515   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:02,516     117 |     struct unary_function
2023-09-08T19:48:02,517         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,521   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:02,521     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:02,522         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:02,523   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:02,526     117 |     struct unary_function
2023-09-08T19:48:02,527         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,541   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:02,542   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:02,542     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:02,543         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,544   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:02,544     117 |     struct unary_function
2023-09-08T19:48:02,545         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,549   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:02,550      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:48:02,551         |                       ^~~~~~~~~~~~~~
2023-09-08T19:48:02,551   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:02,552     117 |     struct unary_function
2023-09-08T19:48:02,553         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:02,718   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:48:02,719   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:48:02,719     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T19:48:02,720         |            ^
2023-09-08T19:48:02,721   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2023-09-08T19:48:02,721     288 |   virtual bool visit (const SBase &x)
2023-09-08T19:48:02,722         |                       ~~~~~~~~~~~~~^
2023-09-08T19:48:02,735   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T19:48:02,736   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:48:02,736     383 |   if (&d == NULL) return 0;
2023-09-08T19:48:02,737         |          ^
2023-09-08T19:48:02,738   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2023-09-08T19:48:02,738     381 | FbcValidator::validate (const SBMLDocument& d)
2023-09-08T19:48:02,739         |                         ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:48:02,739   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T19:48:02,740   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:48:02,741     413 |   if (&filename == NULL) return 0;
2023-09-08T19:48:02,741         |                 ^
2023-09-08T19:48:02,742   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2023-09-08T19:48:02,743     411 | FbcValidator::validate (const std::string& filename)
2023-09-08T19:48:02,744         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:48:03,609   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T19:48:03,610   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:03,611     383 |   if (&d == NULL) return 0;
2023-09-08T19:48:03,612         |   ^~
2023-09-08T19:48:03,622   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:48:03,623   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:03,623     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T19:48:03,624         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:48:03,635   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T19:48:03,636   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:03,637     413 |   if (&filename == NULL) return 0;
2023-09-08T19:48:03,638         |   ^~
2023-09-08T19:48:07,680   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:48:07,681                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:07,681                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:07,682                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2023-09-08T19:48:07,683   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:07,683      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:07,684         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:07,685   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:07,685                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:48:07,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:07,686     117 |     struct unary_function
2023-09-08T19:48:07,687         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:08,350   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:08,351                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T19:48:08,351   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:08,352     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:08,352         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:08,353   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:08,354     117 |     struct unary_function
2023-09-08T19:48:08,354         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:08,362   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:08,363     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:08,364         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:08,365   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:08,365     117 |     struct unary_function
2023-09-08T19:48:08,366         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:11,675   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:48:11,676                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:11,677                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:11,678                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2023-09-08T19:48:11,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:11,679      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:11,680         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:11,681   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:11,681                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:48:11,682   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:11,682     117 |     struct unary_function
2023-09-08T19:48:11,683         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:15,653   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:15,654                    from ./base//sbml/Model.h:426,
2023-09-08T19:48:15,654                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2023-09-08T19:48:15,655   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:15,656      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:15,656         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:15,657   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:15,658                    from ./base//sbml/Model.h:424:
2023-09-08T19:48:15,659   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:15,659     117 |     struct unary_function
2023-09-08T19:48:15,660         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:16,183   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:16,184                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:16,185                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2023-09-08T19:48:16,185   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:16,186     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:16,186         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:16,187   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:16,187     117 |     struct unary_function
2023-09-08T19:48:16,188         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:16,194   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:16,195     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:16,195         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:16,196   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:16,197     117 |     struct unary_function
2023-09-08T19:48:16,197         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:16,215   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:16,215   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:16,216     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:16,217         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:16,217   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:16,218     117 |     struct unary_function
2023-09-08T19:48:16,219         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:20,065   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:48:20,065                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:20,066                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:20,067                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2023-09-08T19:48:20,068                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2023-09-08T19:48:20,069   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:20,069      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:20,070         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:20,070   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:20,071                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2023-09-08T19:48:20,072   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:20,072     117 |     struct unary_function
2023-09-08T19:48:20,073         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:20,650   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:20,650                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:20,651                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2023-09-08T19:48:20,652   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:20,653     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:20,653         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:20,654   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:20,655     117 |     struct unary_function
2023-09-08T19:48:20,655         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:20,659   ./base//sbml/packages/fbc/sbml/Objective.h:831:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:20,660     831 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:20,661         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:20,661   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:20,662     117 |     struct unary_function
2023-09-08T19:48:20,662         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:20,679   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:20,680   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:20,681     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:20,681         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:20,682   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:20,682     117 |     struct unary_function
2023-09-08T19:48:20,683         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:25,816   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:25,817                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:25,818                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:25,819                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:25,819                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:25,820                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:48:25,821                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2023-09-08T19:48:25,821   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:25,822      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:25,822         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:25,823   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:25,824                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:25,824                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:48:25,825                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:48:25,826   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:25,826     117 |     struct unary_function
2023-09-08T19:48:25,827         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:31,600   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:31,600                    from ./base//sbml/Model.h:426,
2023-09-08T19:48:31,601                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:50,
2023-09-08T19:48:31,601                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2023-09-08T19:48:31,602   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:31,602      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:31,603         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:31,604   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:31,605                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:31,605                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:31,606                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49:
2023-09-08T19:48:31,606   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:31,607     117 |     struct unary_function
2023-09-08T19:48:31,607         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:36,782   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:36,783                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:36,784                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:36,784                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:48:36,785                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:59,
2023-09-08T19:48:36,785                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2023-09-08T19:48:36,786   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:36,786      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:36,787         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:36,787   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:36,788                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:36,789                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:36,789                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:48:36,790   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:36,791     117 |     struct unary_function
2023-09-08T19:48:36,791         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:41,613   In file included from ./base//sbml/SpeciesReference.h:261,
2023-09-08T19:48:41,614                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:46,
2023-09-08T19:48:41,615                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2023-09-08T19:48:41,616   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:41,616      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:41,617         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:41,618   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:41,619                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:41,620                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:41,620                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45:
2023-09-08T19:48:41,621   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:41,622     117 |     struct unary_function
2023-09-08T19:48:41,622         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:46,199   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:46,199                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:46,200                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:46,200                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:46,201                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:46,202                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:48:46,202                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:48:46,203                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:48:46,204                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2023-09-08T19:48:46,204   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:46,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:46,206         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:46,206   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:46,207                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2023-09-08T19:48:46,207   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:46,208     117 |     struct unary_function
2023-09-08T19:48:46,208         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:52,775   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:52,775                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:52,776                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:52,776                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:52,777                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:52,777                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:48:52,778                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:48:52,778                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:48:52,779                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:48:52,780                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2023-09-08T19:48:52,780                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2023-09-08T19:48:52,781   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:52,781      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:52,782         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:52,783   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:52,784                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2023-09-08T19:48:52,784   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:52,785     117 |     struct unary_function
2023-09-08T19:48:52,786         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:58,854   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:48:58,855                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:58,856                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:58,857                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:58,858                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:58,858                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:48:58,859                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:48:58,860                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2023-09-08T19:48:58,860                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2023-09-08T19:48:58,861                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2023-09-08T19:48:58,861   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:58,862      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:58,863         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:58,864   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:58,864                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:54:
2023-09-08T19:48:58,865   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:58,866     117 |     struct unary_function
2023-09-08T19:48:58,867         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:04,119   In file included from ./base//sbml/packages/layout/sbml/Curve.h:66,
2023-09-08T19:49:04,119                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2023-09-08T19:49:04,119   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:04,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:04,120         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:04,121   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:04,121                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:04,122                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:04,122                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:04,123                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:49:04,123                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:49:04,124                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2023-09-08T19:49:04,124   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:04,125     117 |     struct unary_function
2023-09-08T19:49:04,125         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:10,745   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:49:10,745                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:10,746                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:10,746                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:10,747                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:10,748                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:10,748                    from ./base//sbml/packages/layout/sbml/Dimensions.h:57,
2023-09-08T19:49:10,749                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2023-09-08T19:49:10,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:10,751      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:10,751         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:10,752   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:10,753                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:10,754                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:10,755                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:10,755                    from /usr/include/c++/12/istream:38,
2023-09-08T19:49:10,756                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:49:10,757                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2023-09-08T19:49:10,757   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:10,758     117 |     struct unary_function
2023-09-08T19:49:10,759         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:16,681   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:55,
2023-09-08T19:49:16,681                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2023-09-08T19:49:16,682   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:16,683      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:16,683         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:16,684   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:16,685                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:53:
2023-09-08T19:49:16,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:16,686     117 |     struct unary_function
2023-09-08T19:49:16,687         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:24,925   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:49:24,926                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:24,926                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:24,927                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:24,927                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:24,928                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:24,928                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:24,929                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:49:24,929                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:49:24,930                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T19:49:24,930                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2023-09-08T19:49:24,931   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:24,931      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:24,932         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:24,932   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:24,933                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:49:24,934                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:49:24,934                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:49:24,935                    from ./base//sbml/SBase.h:146,
2023-09-08T19:49:24,936                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T19:49:24,936   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:24,937     117 |     struct unary_function
2023-09-08T19:49:24,938         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:25,392   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T19:49:25,393   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T19:49:25,393     373 |   if (&id != NULL && id.empty())
2023-09-08T19:49:25,394         |           ^
2023-09-08T19:49:25,395   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2023-09-08T19:49:25,396     371 | int GraphicalObject::setId(const std::string& id)
2023-09-08T19:49:25,396         |                            ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T19:49:25,397   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T19:49:25,398   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T19:49:25,398     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T19:49:25,399         |               ^
2023-09-08T19:49:25,400   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2023-09-08T19:49:25,400     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2023-09-08T19:49:25,401         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:49:26,055   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T19:49:26,056   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:26,057     373 |   if (&id != NULL && id.empty())
2023-09-08T19:49:26,058         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2023-09-08T19:49:26,058   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T19:49:26,059   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:26,059     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T19:49:26,060         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-08T19:49:34,043   In file included from ./base//sbml/packages/layout/sbml/Layout.h:58,
2023-09-08T19:49:34,044                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2023-09-08T19:49:34,044   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:34,045      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:34,045         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:34,046   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:34,046                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:34,047                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:34,047                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:34,048                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:49:34,048                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:49:34,049                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2023-09-08T19:49:34,050   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:34,050     117 |     struct unary_function
2023-09-08T19:49:34,051         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:34,874   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2023-09-08T19:49:34,875   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:49:34,875     453 |   if (&(name) == NULL)
2023-09-08T19:49:34,876         |               ^
2023-09-08T19:49:34,877   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2023-09-08T19:49:34,878     448 | int Layout::setName (const std::string& name)
2023-09-08T19:49:34,878         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:49:35,696   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:35,697     453 |   if (&(name) == NULL)
2023-09-08T19:49:35,698         |   ^~
2023-09-08T19:49:47,103   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:49:47,104                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:47,104                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:47,105                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:47,106                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:47,106                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:47,107                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:47,107                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2023-09-08T19:49:47,108                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2023-09-08T19:49:47,109   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:47,110      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:47,110         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:47,111   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:47,112                    from ./base//sbml/packages/layout/sbml/LineSegment.h:52:
2023-09-08T19:49:47,112   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:47,113     117 |     struct unary_function
2023-09-08T19:49:47,113         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:53,389   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:49:53,390                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:53,390                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:53,391                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:53,391                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:53,392                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:53,393                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:53,393                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2023-09-08T19:49:53,394   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:53,394      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:53,395         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:53,395   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:53,396                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:53,397                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:53,397                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:53,398                    from /usr/include/c++/12/istream:38,
2023-09-08T19:49:53,398                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:49:53,399                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2023-09-08T19:49:53,400   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:53,400     117 |     struct unary_function
2023-09-08T19:49:53,401         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:59,388   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61,
2023-09-08T19:49:59,389                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2023-09-08T19:49:59,390   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:59,390      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:59,391         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:59,392   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:59,393                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:59:
2023-09-08T19:49:59,393   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:59,394     117 |     struct unary_function
2023-09-08T19:49:59,394         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:07,415   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:07,415                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:07,416                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:07,416                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:07,417                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:07,418                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:07,418                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:07,419                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:07,420                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:07,421                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2023-09-08T19:50:07,422                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2023-09-08T19:50:07,422   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:07,423      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:07,423         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:07,424   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:07,424                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:53:
2023-09-08T19:50:07,425   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:07,425     117 |     struct unary_function
2023-09-08T19:50:07,426         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:14,321   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:14,322                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:14,322                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:14,323                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:14,323                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:14,324                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:14,324                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:14,325                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:14,325                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:14,326                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:50,
2023-09-08T19:50:14,327                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2023-09-08T19:50:14,328   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:14,328      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:14,329         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:14,330   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:14,331                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49:
2023-09-08T19:50:14,331   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:14,332     117 |     struct unary_function
2023-09-08T19:50:14,333         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:20,157   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:20,157                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:20,158                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:20,159                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:20,159                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:20,160                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:20,160                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:20,161                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:20,162                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:20,162                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2023-09-08T19:50:20,163                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2023-09-08T19:50:20,164   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:20,164      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:20,165         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:20,166   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:20,167                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:53:
2023-09-08T19:50:20,167   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:20,168     117 |     struct unary_function
2023-09-08T19:50:20,168         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:27,121   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:27,122                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:27,123                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:27,123                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:27,124                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:27,124                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:27,124                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:27,125                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:27,125                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:27,126                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2023-09-08T19:50:27,126                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2023-09-08T19:50:27,127   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:27,127      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:27,128         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:27,128   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:27,129                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2023-09-08T19:50:27,130   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:27,130     117 |     struct unary_function
2023-09-08T19:50:27,131         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:33,401   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:33,401                    from ./base//sbml/Model.h:426,
2023-09-08T19:50:33,402                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2023-09-08T19:50:33,402   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:33,403      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:33,404         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:33,404   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:33,405                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:50:33,406                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:50:33,406                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2023-09-08T19:50:33,407   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:33,407     117 |     struct unary_function
2023-09-08T19:50:33,408         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:38,350   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:50:38,351                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:38,352                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:38,352                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:38,353                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:38,354                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:38,355                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:38,355                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:38,356                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:38,357                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T19:50:38,358                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2023-09-08T19:50:38,358   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:38,359      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:38,359         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:38,360   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:38,360                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:50:38,361                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:50:38,361                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:50:38,362                    from ./base//sbml/SBase.h:146,
2023-09-08T19:50:38,362                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T19:50:38,363   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:38,364     117 |     struct unary_function
2023-09-08T19:50:38,364         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:42,402   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:50:42,403                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:42,403                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:42,404                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2023-09-08T19:50:42,405                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2023-09-08T19:50:42,406   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:42,406      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:42,407         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:42,408   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:42,409                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2023-09-08T19:50:42,409                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2023-09-08T19:50:42,410                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2023-09-08T19:50:42,411   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:42,412     117 |     struct unary_function
2023-09-08T19:50:42,412         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:45,557   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintGeneralGlyphLayoutGGNoDuplicateReferences::check_(const Model&, const GeneralGlyph&)’:
2023-09-08T19:50:45,558   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:452:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:45,558     452 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:45,559         |       ~~~~~~~~~~~~~~~~^~
2023-09-08T19:50:45,560   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:438:11: note: ‘obj’ was declared here
2023-09-08T19:50:45,561     438 |   SBase * obj;
2023-09-08T19:50:45,561         |           ^~~
2023-09-08T19:50:45,867   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintSpeciesReferenceGlyphLayoutSRGNoDuplicateReferences::check_(const Model&, const SpeciesReferenceGlyph&)’:
2023-09-08T19:50:45,867   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:678:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:45,868     678 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:45,869         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:45,869   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:664:11: note: ‘obj’ was declared here
2023-09-08T19:50:45,870     664 |   SBase * obj;
2023-09-08T19:50:45,870         |           ^~~
2023-09-08T19:50:45,959   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintTextGlyphLayoutTGNoDuplicateReferences::check_(const Model&, const TextGlyph&)’:
2023-09-08T19:50:45,960   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:545:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:45,961     545 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:45,961         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:45,962   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:531:11: note: ‘obj’ was declared here
2023-09-08T19:50:45,962     531 |   SBase * obj;
2023-09-08T19:50:45,963         |           ^~~
2023-09-08T19:50:46,051   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintReferenceGlyphLayoutREFGNoDuplicateReferences::check_(const Model&, const ReferenceGlyph&)’:
2023-09-08T19:50:46,051   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:807:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:46,052     807 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:46,053         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:46,054   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:793:11: note: ‘obj’ was declared here
2023-09-08T19:50:46,054     793 |   SBase * obj;
2023-09-08T19:50:46,055         |           ^~~
2023-09-08T19:50:50,140   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:50:50,141                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:50,141                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:50,142                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2023-09-08T19:50:50,143                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2023-09-08T19:50:50,144   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:50,145      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:50,145         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:50,146   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:50,147                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2023-09-08T19:50:50,147                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2023-09-08T19:50:50,148                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2023-09-08T19:50:50,149   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:50,149     117 |     struct unary_function
2023-09-08T19:50:50,150         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:54,063   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:50:54,064                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:54,065                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:54,066                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2023-09-08T19:50:54,066   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:54,067      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:54,067         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:54,068   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:54,069                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:50:54,069   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:54,070     117 |     struct unary_function
2023-09-08T19:50:54,070         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:54,809   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:54,810      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:50:54,811         |                       ^~~~~~~~~~~~~~
2023-09-08T19:50:54,811   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:54,812     117 |     struct unary_function
2023-09-08T19:50:54,813         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:55,122   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:50:55,123   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:50:55,123     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T19:50:55,124         |                        ^
2023-09-08T19:50:55,125   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2023-09-08T19:50:55,126     417 |         virtual bool visit(const SBase &x)
2023-09-08T19:50:55,126         |                            ~~~~~~~~~~~~~^
2023-09-08T19:50:55,151   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T19:50:55,152   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:50:55,153     550 |   if (&d == NULL) return 0;
2023-09-08T19:50:55,154         |          ^
2023-09-08T19:50:55,155   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2023-09-08T19:50:55,155     548 | LayoutValidator::validate (const SBMLDocument& d)
2023-09-08T19:50:55,156         |                            ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:50:55,157   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T19:50:55,158   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:50:55,158     592 |   if (&filename == NULL) return 0;
2023-09-08T19:50:55,159         |                 ^
2023-09-08T19:50:55,160   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2023-09-08T19:50:55,160     590 | LayoutValidator::validate (const std::string& filename)
2023-09-08T19:50:55,161         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:50:56,330   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T19:50:56,330   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:50:56,331     550 |   if (&d == NULL) return 0;
2023-09-08T19:50:56,332         |   ^~
2023-09-08T19:50:56,358   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:50:56,359   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:50:56,359     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T19:50:56,360         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:50:56,381   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T19:50:56,382   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:50:56,382     592 |   if (&filename == NULL) return 0;
2023-09-08T19:50:56,383         |   ^~
2023-09-08T19:51:01,466   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:51:01,467                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:01,467                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:01,468                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2023-09-08T19:51:01,468   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:01,469      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:01,470         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:01,470   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:01,471                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:51:01,471   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:01,472     117 |     struct unary_function
2023-09-08T19:51:01,472         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:05,602   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:51:05,603                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:05,603                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:05,604                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2023-09-08T19:51:05,605   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:05,606      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:05,606         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:05,607   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:05,608                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:51:05,608   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:05,609     117 |     struct unary_function
2023-09-08T19:51:05,610         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:09,529   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:51:09,529                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:09,530                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:09,531                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2023-09-08T19:51:09,532                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2023-09-08T19:51:09,532   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:09,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:09,534         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:09,534   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:09,535                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2023-09-08T19:51:09,536   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:09,536     117 |     struct unary_function
2023-09-08T19:51:09,537         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:15,391   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:51:15,392                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:15,392                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:15,393                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:51:15,394                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:51:15,394                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:51:15,395                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2023-09-08T19:51:15,395   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:15,396      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:15,396         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:15,397   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:15,398                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:15,398                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:51:15,399                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:51:15,399   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:15,400     117 |     struct unary_function
2023-09-08T19:51:15,401         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:20,655   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:51:20,656                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:20,657                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:20,657                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:51:20,658                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:53,
2023-09-08T19:51:20,659                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2023-09-08T19:51:20,659   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:20,660      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:20,661         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:20,662   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:20,662                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:20,663                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:51:20,664                    from ./base//sbml/extension/SBasePlugin.h:252:
2023-09-08T19:51:20,664   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:20,665     117 |     struct unary_function
2023-09-08T19:51:20,665         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:25,766   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:51:25,767                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:25,768                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:25,769                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:51:25,770                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:59,
2023-09-08T19:51:25,770                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2023-09-08T19:51:25,771   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:25,772      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:25,773         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:25,773   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:25,774                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:25,774                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:51:25,775                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:51:25,775   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:25,776     117 |     struct unary_function
2023-09-08T19:51:25,776         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:29,767   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2023-09-08T19:51:29,768                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2023-09-08T19:51:29,768   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:29,769      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:29,769         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:29,770   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:29,770                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2023-09-08T19:51:29,771   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:29,771     117 |     struct unary_function
2023-09-08T19:51:29,772         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:30,488   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T19:51:30,488   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:30,489      81 |   if (&orig == NULL)
2023-09-08T19:51:30,490         |             ^
2023-09-08T19:51:30,490   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2023-09-08T19:51:30,491      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2023-09-08T19:51:30,492         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:30,493   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T19:51:30,493   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:30,494      99 |   if (&rhs == NULL)
2023-09-08T19:51:30,495         |            ^
2023-09-08T19:51:30,496   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2023-09-08T19:51:30,496      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2023-09-08T19:51:30,497         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:31,018   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T19:51:31,018   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:31,019      81 |   if (&orig == NULL)
2023-09-08T19:51:31,020         |   ^~
2023-09-08T19:51:31,020   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T19:51:31,021   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:31,022      99 |   if (&rhs == NULL)
2023-09-08T19:51:31,022         |   ^~
2023-09-08T19:51:34,983   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:59,
2023-09-08T19:51:34,983                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2023-09-08T19:51:34,984   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:34,984      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:34,985         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:34,985   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:34,986                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:55:
2023-09-08T19:51:34,986   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:34,987     117 |     struct unary_function
2023-09-08T19:51:34,987         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:35,714   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T19:51:35,714   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:35,715      88 |   if (&orig == NULL)
2023-09-08T19:51:35,715         |             ^
2023-09-08T19:51:35,716   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2023-09-08T19:51:35,716      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2023-09-08T19:51:35,717         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:35,718   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T19:51:35,719   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:35,720     114 |   if (&rhs == NULL)
2023-09-08T19:51:35,720         |            ^
2023-09-08T19:51:35,721   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2023-09-08T19:51:35,722     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2023-09-08T19:51:35,723         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:35,747   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T19:51:35,748   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:35,749     651 |   if (&orig == NULL)
2023-09-08T19:51:35,750         |             ^
2023-09-08T19:51:35,751   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2023-09-08T19:51:35,751     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2023-09-08T19:51:35,752         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:35,753   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T19:51:35,753   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:35,754     673 |   if (&rhs == NULL)
2023-09-08T19:51:35,755         |            ^
2023-09-08T19:51:35,755   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2023-09-08T19:51:35,756     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2023-09-08T19:51:35,757         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:36,365   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T19:51:36,366   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:36,367      88 |   if (&orig == NULL)
2023-09-08T19:51:36,368         |   ^~
2023-09-08T19:51:36,368   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T19:51:36,369   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:36,369     114 |   if (&rhs == NULL)
2023-09-08T19:51:36,370         |   ^~
2023-09-08T19:51:36,370   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T19:51:36,371   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:36,371     673 |   if (&rhs == NULL)
2023-09-08T19:51:36,372         |   ^~
2023-09-08T19:51:36,383   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T19:51:36,384   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:36,384     651 |   if (&orig == NULL)
2023-09-08T19:51:36,385         |   ^~
2023-09-08T19:51:41,679   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2023-09-08T19:51:41,679                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2023-09-08T19:51:41,680   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:41,681      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:41,681         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:41,682   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:41,682                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2023-09-08T19:51:41,683   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:41,683     117 |     struct unary_function
2023-09-08T19:51:41,684         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:42,414   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T19:51:42,415   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:42,416      91 |   if (&orig == NULL)
2023-09-08T19:51:42,417         |             ^
2023-09-08T19:51:42,417   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2023-09-08T19:51:42,418      88 | Input::Input (const Input& orig)
2023-09-08T19:51:42,419         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:51:42,420   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T19:51:42,420   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:42,421     114 |   if (&rhs == NULL)
2023-09-08T19:51:42,421         |            ^
2023-09-08T19:51:42,422   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2023-09-08T19:51:42,423     112 | Input::operator=(const Input& rhs)
2023-09-08T19:51:42,423         |                  ~~~~~~~~~~~~~^~~
2023-09-08T19:51:42,428   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:42,429   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T19:51:42,430     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:42,430         |                             ^
2023-09-08T19:51:42,431   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2023-09-08T19:51:42,432     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T19:51:42,433         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:51:42,433   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T19:51:42,434   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:51:42,434     328 |   if (&(name) == NULL)
2023-09-08T19:51:42,435         |               ^
2023-09-08T19:51:42,435   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2023-09-08T19:51:42,436     326 | Input::setName(const std::string& name)
2023-09-08T19:51:42,436         |                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:42,474   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2023-09-08T19:51:42,474   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:42,475     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T19:51:42,475         |                             ^~~~~~~~~~~~~~
2023-09-08T19:51:42,476   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:42,476     117 |     struct unary_function
2023-09-08T19:51:42,477         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:43,088   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T19:51:43,089   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:43,089     328 |   if (&(name) == NULL)
2023-09-08T19:51:43,090         |   ^~
2023-09-08T19:51:43,106   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T19:51:43,107   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:43,108      91 |   if (&orig == NULL)
2023-09-08T19:51:43,108         |   ^~
2023-09-08T19:51:43,109   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T19:51:43,110   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:43,111     114 |   if (&rhs == NULL)
2023-09-08T19:51:43,111         |   ^~
2023-09-08T19:51:43,112   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:43,113   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:43,113     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:43,114         |   ^~
2023-09-08T19:51:49,995   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2023-09-08T19:51:49,996                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2023-09-08T19:51:49,997   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:49,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:49,998         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:49,999   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:49,999                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2023-09-08T19:51:50,000   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:50,001     117 |     struct unary_function
2023-09-08T19:51:50,002         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:50,735   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T19:51:50,736   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:50,736      89 |   if (&orig == NULL)
2023-09-08T19:51:50,737         |             ^
2023-09-08T19:51:50,737   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2023-09-08T19:51:50,738      86 | Output::Output (const Output& orig)
2023-09-08T19:51:50,738         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:50,739   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T19:51:50,739   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:50,740     111 |   if (&rhs == NULL)
2023-09-08T19:51:50,740         |            ^
2023-09-08T19:51:50,741   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2023-09-08T19:51:50,742     109 | Output::operator=(const Output& rhs)
2023-09-08T19:51:50,742         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T19:51:50,744   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:50,745   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T19:51:50,745     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:50,746         |                             ^
2023-09-08T19:51:50,747   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2023-09-08T19:51:50,747     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T19:51:50,748         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:51:50,749   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T19:51:50,750   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:51:50,750     304 |   if (&(name) == NULL)
2023-09-08T19:51:50,751         |               ^
2023-09-08T19:51:50,752   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2023-09-08T19:51:50,752     302 | Output::setName(const std::string& name)
2023-09-08T19:51:50,753         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:50,788   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2023-09-08T19:51:50,789   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:50,790     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T19:51:50,790         |                             ^~~~~~~~~~~~~~
2023-09-08T19:51:50,791   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:50,792     117 |     struct unary_function
2023-09-08T19:51:50,792         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:51,397   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T19:51:51,398   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:51,399     304 |   if (&(name) == NULL)
2023-09-08T19:51:51,399         |   ^~
2023-09-08T19:51:51,415   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T19:51:51,416   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:51,417      89 |   if (&orig == NULL)
2023-09-08T19:51:51,418         |   ^~
2023-09-08T19:51:51,418   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T19:51:51,419   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:51,419     111 |   if (&rhs == NULL)
2023-09-08T19:51:51,420         |   ^~
2023-09-08T19:51:51,420   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:51,421   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:51,421     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:51,422         |   ^~
2023-09-08T19:51:58,057   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:70,
2023-09-08T19:51:58,057                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2023-09-08T19:51:58,058   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:58,059      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:58,059         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:58,060   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:58,060                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:66:
2023-09-08T19:51:58,061   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:58,062     117 |     struct unary_function
2023-09-08T19:51:58,062         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:58,790   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T19:51:58,791   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:58,792      95 |   if (&orig == NULL)
2023-09-08T19:51:58,792         |             ^
2023-09-08T19:51:58,793   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2023-09-08T19:51:58,794      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2023-09-08T19:51:58,795         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:58,796   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T19:51:58,796   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:58,797     120 |   if (&rhs == NULL)
2023-09-08T19:51:58,798         |            ^
2023-09-08T19:51:58,799   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2023-09-08T19:51:58,799     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2023-09-08T19:51:58,800         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:58,802   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T19:51:58,802   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2023-09-08T19:51:58,803     295 |   if (&(compartment) == NULL)
2023-09-08T19:51:58,804         |                      ^
2023-09-08T19:51:58,805   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2023-09-08T19:51:58,806     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2023-09-08T19:51:58,807         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T19:51:58,807   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2023-09-08T19:51:58,808   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:51:58,808     329 |   if (&(name) == NULL)
2023-09-08T19:51:58,809         |               ^
2023-09-08T19:51:58,810   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2023-09-08T19:51:58,810     327 | QualitativeSpecies::setName(const std::string& name)
2023-09-08T19:51:58,811         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:59,455   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:59,455     329 |   if (&(name) == NULL)
2023-09-08T19:51:59,456         |   ^~
2023-09-08T19:51:59,471   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T19:51:59,471   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:59,472      95 |   if (&orig == NULL)
2023-09-08T19:51:59,472         |   ^~
2023-09-08T19:51:59,473   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T19:51:59,474   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:59,474     120 |   if (&rhs == NULL)
2023-09-08T19:51:59,475         |   ^~
2023-09-08T19:51:59,476   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T19:51:59,476   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:59,477     295 |   if (&(compartment) == NULL)
2023-09-08T19:51:59,478         |   ^~
2023-09-08T19:52:06,199   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2023-09-08T19:52:06,199                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2023-09-08T19:52:06,200   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:06,200      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:06,201         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:06,202   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:06,202                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2023-09-08T19:52:06,203   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:06,204     117 |     struct unary_function
2023-09-08T19:52:06,204         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:06,952   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T19:52:06,953   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:52:06,953      94 |   if (&orig == NULL)
2023-09-08T19:52:06,954         |             ^
2023-09-08T19:52:06,955   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2023-09-08T19:52:06,956      91 | Transition::Transition (const Transition& orig)
2023-09-08T19:52:06,957         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:06,958   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T19:52:06,958   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:52:06,959     118 |   if (&rhs == NULL)
2023-09-08T19:52:06,959         |            ^
2023-09-08T19:52:06,960   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2023-09-08T19:52:06,960     116 | Transition::operator=(const Transition& rhs)
2023-09-08T19:52:06,961         |                       ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:52:06,965   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2023-09-08T19:52:06,966   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:52:06,966     257 |   if (&(name) == NULL)
2023-09-08T19:52:06,967         |               ^
2023-09-08T19:52:06,967   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2023-09-08T19:52:06,968     255 | Transition::setName(const std::string& name)
2023-09-08T19:52:06,969         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:07,625   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:07,626     257 |   if (&(name) == NULL)
2023-09-08T19:52:07,627         |   ^~
2023-09-08T19:52:07,643   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T19:52:07,643   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:07,644     118 |   if (&rhs == NULL)
2023-09-08T19:52:07,645         |   ^~
2023-09-08T19:52:07,660   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T19:52:07,661   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:07,661      94 |   if (&orig == NULL)
2023-09-08T19:52:07,662         |   ^~
2023-09-08T19:52:14,476   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:14,477                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:14,477                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:14,478                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2023-09-08T19:52:14,479                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2023-09-08T19:52:14,480   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:14,480      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:14,481         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:14,482   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:14,483                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:14,483                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2023-09-08T19:52:14,484                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2023-09-08T19:52:14,485   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:14,486     117 |     struct unary_function
2023-09-08T19:52:14,486         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:19,754   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:19,754                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:19,755                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:19,756                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2023-09-08T19:52:19,756                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2023-09-08T19:52:19,757   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:19,757      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:19,758         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:19,758   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:19,759                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:19,759                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2023-09-08T19:52:19,760                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2023-09-08T19:52:19,760   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:19,761     117 |     struct unary_function
2023-09-08T19:52:19,761         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:23,640   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:23,641                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:23,642                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:23,642                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2023-09-08T19:52:23,643                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2023-09-08T19:52:23,644   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:23,644      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:23,645         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:23,646   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:23,647                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:23,648                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2023-09-08T19:52:23,649                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2023-09-08T19:52:23,650   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:23,651     117 |     struct unary_function
2023-09-08T19:52:23,651         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:27,726   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:27,726                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:27,727                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:27,728                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2023-09-08T19:52:27,728   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:27,729      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:27,730         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:27,730   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:27,731                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:27,732   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:27,732     117 |     struct unary_function
2023-09-08T19:52:27,733         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:28,429   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:28,430      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:52:28,431         |                       ^~~~~~~~~~~~~~
2023-09-08T19:52:28,431   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:28,432     117 |     struct unary_function
2023-09-08T19:52:28,432         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:28,626   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:52:28,627   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:52:28,627     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T19:52:28,628         |           ^
2023-09-08T19:52:28,628   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2023-09-08T19:52:28,629     313 |   virtual bool visit (const SBase &x)
2023-09-08T19:52:28,629         |                       ~~~~~~~~~~~~~^
2023-09-08T19:52:28,646   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T19:52:28,647   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:52:28,647     419 |   if (&d == NULL) return 0;
2023-09-08T19:52:28,648         |          ^
2023-09-08T19:52:28,648   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2023-09-08T19:52:28,649     417 | QualValidator::validate (const SBMLDocument& d)
2023-09-08T19:52:28,650         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:52:28,651   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T19:52:28,652   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:52:28,652     449 |   if (&filename == NULL) return 0;
2023-09-08T19:52:28,653         |                 ^
2023-09-08T19:52:28,654   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2023-09-08T19:52:28,655     447 | QualValidator::validate (const std::string& filename)
2023-09-08T19:52:28,656         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:52:29,564   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T19:52:29,565   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:29,566     419 |   if (&d == NULL) return 0;
2023-09-08T19:52:29,567         |   ^~
2023-09-08T19:52:29,581   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:52:29,582   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:29,582     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T19:52:29,583         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:52:29,597   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T19:52:29,598   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:29,599     449 |   if (&filename == NULL) return 0;
2023-09-08T19:52:29,599         |   ^~
2023-09-08T19:52:34,039   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:52:34,040                    from ./base//sbml/Model.h:426,
2023-09-08T19:52:34,040                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2023-09-08T19:52:34,041   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:34,041      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:34,042         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:34,043   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:34,043                    from ./base//sbml/Model.h:424:
2023-09-08T19:52:34,044   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:34,044     117 |     struct unary_function
2023-09-08T19:52:34,045         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:38,549   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:38,550                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:38,550                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:38,551                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2023-09-08T19:52:38,552                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2023-09-08T19:52:38,552   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:38,553      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:38,553         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:38,554   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:38,555                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2023-09-08T19:52:38,555   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:38,556     117 |     struct unary_function
2023-09-08T19:52:38,556         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:39,254   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:52:39,255   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:52:39,255      97 |   if (&(node) == NULL)
2023-09-08T19:52:39,256         |               ^
2023-09-08T19:52:39,257   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2023-09-08T19:52:39,258      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:52:39,258         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:39,764   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:39,765      97 |   if (&(node) == NULL)
2023-09-08T19:52:39,766         |   ^~
2023-09-08T19:52:42,920   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:42,920                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:42,921                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:42,922                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2023-09-08T19:52:42,923   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:42,923      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:42,924         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:42,925   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:42,926                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:42,926   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:42,927     117 |     struct unary_function
2023-09-08T19:52:42,928         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:46,935   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:46,936                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:46,936                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:46,937                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2023-09-08T19:52:46,937   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:46,938      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:46,939         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:46,939   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:46,940                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:46,940   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:46,941     117 |     struct unary_function
2023-09-08T19:52:46,941         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:50,785   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:50,785                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:50,786                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:50,786                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2023-09-08T19:52:50,787   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:50,788      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:50,788         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:50,789   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:50,790                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:50,791   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:50,791     117 |     struct unary_function
2023-09-08T19:52:50,792         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:54,872   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:52:54,873                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:54,873                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:54,874                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2023-09-08T19:52:54,875                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2023-09-08T19:52:54,875   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:54,876      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:54,877         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:54,877   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:54,878                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2023-09-08T19:52:54,879   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:54,879     117 |     struct unary_function
2023-09-08T19:52:54,880         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:00,478   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:53:00,479                    from ./base//sbml/Model.h:426,
2023-09-08T19:53:00,480                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2023-09-08T19:53:00,481   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:00,481      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:00,482         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:00,482   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:00,483                    from ./base//sbml/Model.h:424:
2023-09-08T19:53:00,484   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:00,484     117 |     struct unary_function
2023-09-08T19:53:00,485         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:04,738   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:53:04,738                    from ./base//sbml/Model.h:426,
2023-09-08T19:53:04,739                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2023-09-08T19:53:04,739   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:04,740      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:04,740         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:04,741   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:04,741                    from ./base//sbml/Model.h:424:
2023-09-08T19:53:04,742   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:04,742     117 |     struct unary_function
2023-09-08T19:53:04,743         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:09,003   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:53:09,004                    from ./base//sbml/Model.h:426,
2023-09-08T19:53:09,004                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2023-09-08T19:53:09,005   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:09,006      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:09,007         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:09,007   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:09,008                    from ./base//sbml/Model.h:424:
2023-09-08T19:53:09,009   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:09,010     117 |     struct unary_function
2023-09-08T19:53:09,010         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:09,460   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T19:53:09,461   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:53:09,462      74 |   if (&orig == NULL)
2023-09-08T19:53:09,462         |             ^
2023-09-08T19:53:09,463   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2023-09-08T19:53:09,464      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2023-09-08T19:53:09,464         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:53:09,465   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T19:53:09,466   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:53:09,467     138 |   if (&rhs == NULL)
2023-09-08T19:53:09,467         |            ^
2023-09-08T19:53:09,468   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2023-09-08T19:53:09,469     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2023-09-08T19:53:09,470         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:53:09,952   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T19:53:09,953   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:09,953      74 |   if (&orig == NULL)
2023-09-08T19:53:09,954         |   ^~
2023-09-08T19:53:09,955   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T19:53:09,956   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:09,956     138 |   if (&rhs == NULL)
2023-09-08T19:53:09,957         |   ^~
2023-09-08T19:53:13,092   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:53:13,093                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:13,093                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2023-09-08T19:53:13,094   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:13,094      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:13,095         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:13,096   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:13,096                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:53:13,097   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:13,097     117 |     struct unary_function
2023-09-08T19:53:13,098         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:25,519   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T19:53:25,519   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2023-09-08T19:53:25,520      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T19:53:25,521         |                       ^
2023-09-08T19:53:25,522   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2023-09-08T19:53:25,523      48 | IdList::IdList(const std::string& commaSeparated)
2023-09-08T19:53:25,523         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:53:25,823   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T19:53:25,824   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:25,825      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T19:53:25,825         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:53:33,362   In file included from ./base/sbml/util/memory.c:39:
2023-09-08T19:53:33,363   ./base//sbml/common/libsbml-package.h:44: warning: "PACKAGE_NAME" redefined
2023-09-08T19:53:33,364      44 | #define PACKAGE_NAME "libSBML"
2023-09-08T19:53:33,364         |
2023-09-08T19:53:33,365   <command-line>: note: this is the location of the previous definition
2023-09-08T19:53:33,544   In file included from ./base/sbml/util/util.c:49:
2023-09-08T19:53:33,544   ./base//sbml/common/libsbml-package.h:44: warning: "PACKAGE_NAME" redefined
2023-09-08T19:53:33,545      44 | #define PACKAGE_NAME "libSBML"
2023-09-08T19:53:33,546         |
2023-09-08T19:53:33,547   <command-line>: note: this is the location of the previous definition
2023-09-08T19:53:36,447   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:53:36,447                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:36,448                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2023-09-08T19:53:36,449   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:36,450      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:36,450         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:36,451   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:36,451                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:53:36,452   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:36,452     117 |     struct unary_function
2023-09-08T19:53:36,453         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:46,705   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:53:46,706                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:46,706                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2023-09-08T19:53:46,707   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:46,707      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:46,708         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:46,708   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:46,709                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:53:46,709   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:46,710     117 |     struct unary_function
2023-09-08T19:53:46,711         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:51,430   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:53:51,431                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:51,431                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2023-09-08T19:53:51,432   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:51,433      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:51,434         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:51,434   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:51,435                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:53:51,436   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:51,437     117 |     struct unary_function
2023-09-08T19:53:51,437         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:58,678   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:53:58,679                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:53:58,679                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2023-09-08T19:53:58,680                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2023-09-08T19:53:58,681   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:58,681      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:58,682         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:58,683   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:58,684                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:53:58,684                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2023-09-08T19:53:58,685                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2023-09-08T19:53:58,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:58,686     117 |     struct unary_function
2023-09-08T19:53:58,687         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:04,399   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:04,399                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:54:04,400                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2023-09-08T19:54:04,400                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2023-09-08T19:54:04,401   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:04,401      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:04,402         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:04,402   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:04,403                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:04,403                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2023-09-08T19:54:04,403                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2023-09-08T19:54:04,404   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:04,404     117 |     struct unary_function
2023-09-08T19:54:04,405         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:10,506   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:10,506                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:54:10,507                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2023-09-08T19:54:10,507                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2023-09-08T19:54:10,508   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:10,508      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:10,509         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:10,510   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:10,510                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:10,511                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2023-09-08T19:54:10,512                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2023-09-08T19:54:10,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:10,513     117 |     struct unary_function
2023-09-08T19:54:10,514         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:16,342   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:16,343                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:54:16,344                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2023-09-08T19:54:16,344                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2023-09-08T19:54:16,345   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:16,345      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:16,346         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:16,347   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:16,347                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:16,348                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2023-09-08T19:54:16,349                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2023-09-08T19:54:16,349   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:16,350     117 |     struct unary_function
2023-09-08T19:54:16,351         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:22,091   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:22,092                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:54:22,092                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2023-09-08T19:54:22,093                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2023-09-08T19:54:22,094   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:22,094      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:22,095         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:22,095   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:22,096                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:22,096                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2023-09-08T19:54:22,097                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2023-09-08T19:54:22,097   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:22,098     117 |     struct unary_function
2023-09-08T19:54:22,098         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:27,589   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:54:27,590                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:27,591                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:54:27,591                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2023-09-08T19:54:27,592                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2023-09-08T19:54:27,592   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:27,593      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:27,593         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:27,594   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:27,595                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:27,596                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2023-09-08T19:54:27,596                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2023-09-08T19:54:27,597   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:27,598     117 |     struct unary_function
2023-09-08T19:54:27,598         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:31,813   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:54:31,814                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:31,815                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2023-09-08T19:54:31,815   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:31,816      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:31,817         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:31,817   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:31,818                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:54:31,819   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:31,819     117 |     struct unary_function
2023-09-08T19:54:31,820         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:35,684   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:54:35,684                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:35,685                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2023-09-08T19:54:35,686   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:35,686      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:35,687         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:35,688   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:35,689                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:54:35,689   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:35,690     117 |     struct unary_function
2023-09-08T19:54:35,690         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:39,691   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:54:39,692                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:39,692                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2023-09-08T19:54:39,693   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:39,694      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:39,694         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:39,695   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:39,695                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:54:39,696   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:39,696     117 |     struct unary_function
2023-09-08T19:54:39,697         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:43,926   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:54:43,927                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:43,928                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:43,928                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:43,929                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:43,930                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2023-09-08T19:54:43,930                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2023-09-08T19:54:43,931   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:43,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:43,932         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:43,933   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:43,934                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:43,935                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:43,935                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2023-09-08T19:54:43,936   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:43,937     117 |     struct unary_function
2023-09-08T19:54:43,937         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:50,116   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:54:50,117                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:50,117                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:50,118                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:50,119                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:50,119                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2023-09-08T19:54:50,120                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2023-09-08T19:54:50,121   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:50,121      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:50,122         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:50,123   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:50,124                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:50,124                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:50,125                    from ./base//sbml/validator/SBMLInternalValidator.h:63:
2023-09-08T19:54:50,126   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:50,126     117 |     struct unary_function
2023-09-08T19:54:50,127         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:54,819   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:54:54,819                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:54,820                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:54,820                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:54,821                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:54,821                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2023-09-08T19:54:54,822   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:54,822      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:54,823         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:54,823   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:54,824                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:54,825                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:54,825                    from ./base//sbml/validator/SBMLValidator.h:73:
2023-09-08T19:54:54,826   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:54,826     117 |     struct unary_function
2023-09-08T19:54:54,827         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:55,128   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T19:54:55,128   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:54:55,129      59 |   if (&orig == NULL)
2023-09-08T19:54:55,130         |             ^
2023-09-08T19:54:55,131   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2023-09-08T19:54:55,131      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2023-09-08T19:54:55,132         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:54:55,133   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T19:54:55,134   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:54:55,135      87 |   if (&rhs == NULL)
2023-09-08T19:54:55,135         |            ^
2023-09-08T19:54:55,136   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2023-09-08T19:54:55,137      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2023-09-08T19:54:55,138         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:54:55,138   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T19:54:55,139   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T19:54:55,140     168 |   if (&msg == NULL) return;
2023-09-08T19:54:55,140         |            ^
2023-09-08T19:54:55,141   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2023-09-08T19:54:55,142     166 | SBMLValidator::logFailure (const SBMLError& msg)
2023-09-08T19:54:55,143         |                            ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:54:55,144   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T19:54:55,144   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:54:55,145     182 |   if (&filename == NULL) return 0;
2023-09-08T19:54:55,146         |                 ^
2023-09-08T19:54:55,146   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2023-09-08T19:54:55,147     180 | SBMLValidator::validate (const std::string& filename)
2023-09-08T19:54:55,148         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:54:55,657   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T19:54:55,658   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:54:55,659      87 |   if (&rhs == NULL)
2023-09-08T19:54:55,659         |   ^~
2023-09-08T19:54:55,660   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T19:54:55,660   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:54:55,661      59 |   if (&orig == NULL)
2023-09-08T19:54:55,661         |   ^~
2023-09-08T19:54:55,664   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T19:54:55,665   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:54:55,665     168 |   if (&msg == NULL) return;
2023-09-08T19:54:55,666         |   ^~
2023-09-08T19:54:55,667   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T19:54:55,667   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:54:55,668     182 |   if (&filename == NULL) return 0;
2023-09-08T19:54:55,669         |   ^~
2023-09-08T19:54:58,835   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:54:58,835                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:58,836                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2023-09-08T19:54:58,837   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:58,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:58,838         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:58,839   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:58,840                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:54:58,841   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:58,841     117 |     struct unary_function
2023-09-08T19:54:58,842         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:06,017   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:55:06,017                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:55:06,018                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2023-09-08T19:55:06,018   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:06,019      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:06,020         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:06,020   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:06,021                    from ./base//sbml/UnitDefinition.h:254:
2023-09-08T19:55:06,022   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:06,022     117 |     struct unary_function
2023-09-08T19:55:06,023         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:15,271   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:55:15,272                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:55:15,272                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:55:15,273                    from ./base/sbml/validator/VConstraint.cpp:33:
2023-09-08T19:55:15,273   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:15,274      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:15,274         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:15,275   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:15,275                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:55:15,276   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:15,276     117 |     struct unary_function
2023-09-08T19:55:15,277         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:15,798   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2023-09-08T19:55:15,798   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2023-09-08T19:55:15,799      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:15,799         |               ^
2023-09-08T19:55:15,800   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2023-09-08T19:55:15,800      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T19:55:15,801         |                          ~~~~~~~~~~~~~^~~~~~
2023-09-08T19:55:15,801   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T19:55:15,802      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:15,803         |                                   ^
2023-09-08T19:55:15,803   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2023-09-08T19:55:15,804      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T19:55:15,805         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:55:16,266   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:16,267      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:16,267         |               ^
2023-09-08T19:55:16,268   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:16,269      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:16,269         |                                   ^
2023-09-08T19:55:19,144   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2023-09-08T19:55:19,144                    from ./base/sbml/validator/Validator.cpp:39:
2023-09-08T19:55:19,145   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:19,146      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:19,146         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:19,147   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:55:19,148                    from ./base/sbml/validator/Validator.cpp:34:
2023-09-08T19:55:19,149   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:19,149     117 |     struct unary_function
2023-09-08T19:55:19,150         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:19,805   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:19,806      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:55:19,807         |                       ^~~~~~~~~~~~~~
2023-09-08T19:55:19,808   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:19,808     117 |     struct unary_function
2023-09-08T19:55:19,809         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:20,278   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T19:55:20,279   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T19:55:20,280     709 |   if (&msg == NULL) return;
2023-09-08T19:55:20,280         |            ^
2023-09-08T19:55:20,281   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2023-09-08T19:55:20,281     707 | Validator::logFailure (const SBMLError& msg)
2023-09-08T19:55:20,282         |                        ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:55:20,283   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T19:55:20,283   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:55:20,284     754 |   if (&d == NULL) return 0;
2023-09-08T19:55:20,284         |          ^
2023-09-08T19:55:20,285   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2023-09-08T19:55:20,285     752 | Validator::validate (const SBMLDocument& d)
2023-09-08T19:55:20,286         |                      ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:55:20,289   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T19:55:20,289   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:55:20,290     815 |   if (&filename == NULL) return 0;
2023-09-08T19:55:20,291         |                 ^
2023-09-08T19:55:20,292   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2023-09-08T19:55:20,292     813 | Validator::validate (const std::string& filename)
2023-09-08T19:55:20,293         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:55:21,795   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T19:55:21,795   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:21,796     709 |   if (&msg == NULL) return;
2023-09-08T19:55:21,797         |   ^~
2023-09-08T19:55:21,817   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T19:55:21,818   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:21,819     754 |   if (&d == NULL) return 0;
2023-09-08T19:55:21,820         |   ^~
2023-09-08T19:55:21,820   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T19:55:21,821   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:21,822     815 |   if (&filename == NULL) return 0;
2023-09-08T19:55:21,823         |   ^~
2023-09-08T19:55:28,397   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:28,398                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:28,399                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2023-09-08T19:55:28,399   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:28,400      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:28,401         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:28,402   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:28,402                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:28,403   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:28,403     117 |     struct unary_function
2023-09-08T19:55:28,404         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:32,930   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:32,931                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:32,931                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2023-09-08T19:55:32,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:32,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:32,933         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:32,934   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:32,934                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:32,935   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:32,935     117 |     struct unary_function
2023-09-08T19:55:32,936         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:37,166   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:37,166                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:37,166                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2023-09-08T19:55:37,167   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:37,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:37,168         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:37,169   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:37,170                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:37,171   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:37,171     117 |     struct unary_function
2023-09-08T19:55:37,172         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:45,541   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:45,542                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:45,543                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2023-09-08T19:55:45,543   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:45,544      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:45,545         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:45,546   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:45,546                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:45,547   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:45,548     117 |     struct unary_function
2023-09-08T19:55:45,548         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:50,310   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:50,311                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:50,312                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2023-09-08T19:55:50,313   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:50,313      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:50,314         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:50,315   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:50,316                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:50,316   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:50,317     117 |     struct unary_function
2023-09-08T19:55:50,317         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:50,706   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:55:50,707   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:55:50,708     104 |   if (&(node) == NULL)
2023-09-08T19:55:50,708         |               ^
2023-09-08T19:55:50,709   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2023-09-08T19:55:50,710     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:55:50,710         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:55:51,209   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:51,210     104 |   if (&(node) == NULL)
2023-09-08T19:55:51,210         |   ^~
2023-09-08T19:55:54,647   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:55:54,647                    from ./base//sbml/Model.h:426,
2023-09-08T19:55:54,648                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2023-09-08T19:55:54,649   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:54,650      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:54,650         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:54,651   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:54,652                    from ./base//sbml/Model.h:424:
2023-09-08T19:55:54,653   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:54,653     117 |     struct unary_function
2023-09-08T19:55:54,654         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:55,055   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:55,056     119 | struct CycleContains : public unary_function<IdList, bool>
2023-09-08T19:55:55,057         |                               ^~~~~~~~~~~~~~
2023-09-08T19:55:55,058   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:55,058     117 |     struct unary_function
2023-09-08T19:55:55,059         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:00,214   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:56:00,215                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:00,215                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:00,216                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2023-09-08T19:56:00,217   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:00,217      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:00,218         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:00,219   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:00,220                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:56:00,220                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:56:00,221                    from ./base//sbml/SBO.h:197,
2023-09-08T19:56:00,222                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2023-09-08T19:56:00,223   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:00,223     117 |     struct unary_function
2023-09-08T19:56:00,224         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:04,562   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:04,563                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:04,564                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2023-09-08T19:56:04,564   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:04,565      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:04,565         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:04,566   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:04,566                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:04,567   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:04,567     117 |     struct unary_function
2023-09-08T19:56:04,568         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:09,286   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:09,287                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:09,287                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2023-09-08T19:56:09,288   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:09,288      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:09,289         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:09,289   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:09,290                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:09,290   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:09,291     117 |     struct unary_function
2023-09-08T19:56:09,292         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:09,685   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:09,685   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:09,686     101 |   if (&(node) == NULL)
2023-09-08T19:56:09,687         |               ^
2023-09-08T19:56:09,688   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2023-09-08T19:56:09,688      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:09,689         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:10,172   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:10,172     101 |   if (&(node) == NULL)
2023-09-08T19:56:10,173         |   ^~
2023-09-08T19:56:13,447   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:13,448                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:13,448                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2023-09-08T19:56:13,449   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:13,450      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:13,450         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:13,451   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:13,452                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:13,453   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:13,453     117 |     struct unary_function
2023-09-08T19:56:13,454         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:17,815   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:17,815                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:17,816                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2023-09-08T19:56:17,816   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:17,817      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:17,817         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:17,818   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:17,819                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:17,819   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:17,820     117 |     struct unary_function
2023-09-08T19:56:17,820         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:18,211   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:18,211   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:18,212     103 |   if (&(node) == NULL)
2023-09-08T19:56:18,212         |               ^
2023-09-08T19:56:18,213   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2023-09-08T19:56:18,214     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:18,215         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:18,704   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:18,705     103 |   if (&(node) == NULL)
2023-09-08T19:56:18,706         |   ^~
2023-09-08T19:56:22,003   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:22,003                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:22,004                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2023-09-08T19:56:22,005   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:22,006      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:22,006         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:22,007   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:22,008                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:22,008   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:22,009     117 |     struct unary_function
2023-09-08T19:56:22,010         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:26,053   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:26,054                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:26,055                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2023-09-08T19:56:26,055   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:26,056      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:26,057         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:26,058   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:26,058                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:26,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:26,060     117 |     struct unary_function
2023-09-08T19:56:26,060         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:26,450   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:26,450   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:26,451     104 |   if (&(node) == NULL)
2023-09-08T19:56:26,451         |               ^
2023-09-08T19:56:26,452   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T19:56:26,453     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:26,453         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:26,947   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:26,947     104 |   if (&(node) == NULL)
2023-09-08T19:56:26,948         |   ^~
2023-09-08T19:56:30,366   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:30,367                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:30,368                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2023-09-08T19:56:30,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:30,369      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:30,370         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:30,371   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:30,371                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:30,372   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:30,373     117 |     struct unary_function
2023-09-08T19:56:30,374         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:34,652   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:56:34,652                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:34,653                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:34,654                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T19:56:34,655                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2023-09-08T19:56:34,656   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:34,656      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:34,657         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:34,658   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:34,659                    from ./base/sbml/validator/constraints/IdBase.h:42:
2023-09-08T19:56:34,659   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:34,660     117 |     struct unary_function
2023-09-08T19:56:34,660         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:38,714   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:56:38,714                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:38,715                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:38,716                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2023-09-08T19:56:38,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:38,717      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:38,719         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:38,719   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:38,720                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:56:38,720   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:38,721     117 |     struct unary_function
2023-09-08T19:56:38,721         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:42,789   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:56:42,789                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:42,790                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:42,790                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2023-09-08T19:56:42,791   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:42,791      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:42,792         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:42,793   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:42,793                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:56:42,794                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:56:42,794                    from ./base//sbml/SBO.h:197,
2023-09-08T19:56:42,795                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2023-09-08T19:56:42,795   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:42,796     117 |     struct unary_function
2023-09-08T19:56:42,796         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:46,679   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:46,680                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:46,681                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2023-09-08T19:56:46,683   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:46,683      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:46,684         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:46,685   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:46,686                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:46,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:46,687     117 |     struct unary_function
2023-09-08T19:56:46,688         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:51,596   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:56:51,597                    from ./base//sbml/Model.h:426,
2023-09-08T19:56:51,598                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2023-09-08T19:56:51,598   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:51,599      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:51,600         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:51,600   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:51,601                    from ./base//sbml/Model.h:424:
2023-09-08T19:56:51,602   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:51,603     117 |     struct unary_function
2023-09-08T19:56:51,603         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:55,991   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:56:55,992                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:56:55,993                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2023-09-08T19:56:55,993   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:55,994      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:55,994         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:55,995   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:55,995                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:56:55,996                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:56:55,996                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:56:55,997                    from ./base//sbml/SBase.h:146,
2023-09-08T19:56:55,997                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2023-09-08T19:56:55,998   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:55,998     117 |     struct unary_function
2023-09-08T19:56:55,998         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:59,844   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:56:59,844                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:56:59,845                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2023-09-08T19:56:59,845   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:59,846      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:59,847         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:59,847   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:59,848                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:56:59,849                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:56:59,850                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:56:59,850                    from ./base//sbml/SBase.h:146,
2023-09-08T19:56:59,851                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2023-09-08T19:56:59,852   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:59,852     117 |     struct unary_function
2023-09-08T19:56:59,853         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:03,709   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:03,709                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:57:03,710                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2023-09-08T19:57:03,711   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:03,711      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:03,712         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:03,713   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:03,713                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:03,714                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:03,715                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:03,715                    from ./base//sbml/SBase.h:146,
2023-09-08T19:57:03,716                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2023-09-08T19:57:03,717   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:03,717     117 |     struct unary_function
2023-09-08T19:57:03,718         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:07,609   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:07,609                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:57:07,610                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2023-09-08T19:57:07,611   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:07,612      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:07,612         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:07,613   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:07,613                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:07,614                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:07,614                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:07,615                    from ./base//sbml/SBase.h:146,
2023-09-08T19:57:07,615                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2023-09-08T19:57:07,616   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:07,616     117 |     struct unary_function
2023-09-08T19:57:07,617         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:11,460   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:11,461                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T19:57:11,462                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2023-09-08T19:57:11,462   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:11,463      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:11,464         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:11,464   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:11,465                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:11,466                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:11,466                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:11,467                    from ./base//sbml/SBase.h:146,
2023-09-08T19:57:11,468                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2023-09-08T19:57:11,468   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:11,469     117 |     struct unary_function
2023-09-08T19:57:11,470         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:15,378   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:57:15,379                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:15,379                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:15,380                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2023-09-08T19:57:15,381   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:15,381      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:15,382         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:15,383   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:15,383                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:15,384                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:15,385                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:15,385                    from ./base//sbml/SBase.h:146,
2023-09-08T19:57:15,386                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2023-09-08T19:57:15,387   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:15,388     117 |     struct unary_function
2023-09-08T19:57:15,388         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:19,356   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:19,357                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:19,358                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2023-09-08T19:57:19,358   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:19,358      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:19,359         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:19,359   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:19,360                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:19,360   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:19,361     117 |     struct unary_function
2023-09-08T19:57:19,361         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:19,756   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:19,757   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:19,757     104 |   if (&(node) == NULL)
2023-09-08T19:57:19,758         |               ^
2023-09-08T19:57:19,759   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2023-09-08T19:57:19,759     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:19,760         |                                             ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:20,242   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:20,243     104 |   if (&(node) == NULL)
2023-09-08T19:57:20,244         |   ^~
2023-09-08T19:57:23,474   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:23,474                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:23,475                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2023-09-08T19:57:23,476   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:23,477      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:23,478         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:23,478   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:23,479                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:23,480   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:23,480     117 |     struct unary_function
2023-09-08T19:57:23,481         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:23,869   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:23,869   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:23,870     104 |   if (&(node) == NULL)
2023-09-08T19:57:23,870         |               ^
2023-09-08T19:57:23,871   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T19:57:23,872     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:23,873         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:24,366   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:24,367     104 |   if (&(node) == NULL)
2023-09-08T19:57:24,368         |   ^~
2023-09-08T19:57:27,760   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:27,760                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:27,761                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2023-09-08T19:57:27,762   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:27,762      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:27,763         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:27,764   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:27,764                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:27,765   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:27,765     117 |     struct unary_function
2023-09-08T19:57:27,766         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:32,553   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:32,553                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:32,554                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2023-09-08T19:57:32,554   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:32,555      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:32,555         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:32,556   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:32,557                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:32,558   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:32,558     117 |     struct unary_function
2023-09-08T19:57:32,559         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:32,958   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:32,958   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:32,959     100 |   if (&(node) == NULL)
2023-09-08T19:57:32,960         |               ^
2023-09-08T19:57:32,961   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2023-09-08T19:57:32,961      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:32,962         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:33,443   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:33,444     100 |   if (&(node) == NULL)
2023-09-08T19:57:33,445         |   ^~
2023-09-08T19:57:36,738   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:36,739                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:36,739                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2023-09-08T19:57:36,740   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:36,740      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:36,741         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:36,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:36,743                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:36,743   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:36,744     117 |     struct unary_function
2023-09-08T19:57:36,745         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:41,381   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:57:41,381                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:41,381                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:41,382                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2023-09-08T19:57:41,382   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:41,383      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:41,383         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:41,384   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:41,384                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:57:41,385   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:41,385     117 |     struct unary_function
2023-09-08T19:57:41,386         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:45,168   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:57:45,168                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:45,169                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:45,169                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2023-09-08T19:57:45,170   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:45,171      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:45,171         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:45,172   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:45,172                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:57:45,173   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:45,173     117 |     struct unary_function
2023-09-08T19:57:45,174         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:49,116   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:49,117                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:49,118                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2023-09-08T19:57:49,119   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:49,120      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:49,120         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:49,121   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:49,122                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:49,122   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:49,123     117 |     struct unary_function
2023-09-08T19:57:49,124         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:49,513   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:49,514   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:49,515     100 |   if (&(node) == NULL)
2023-09-08T19:57:49,515         |               ^
2023-09-08T19:57:49,516   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2023-09-08T19:57:49,517      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:49,518         |                                                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:50,015   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:50,016     100 |   if (&(node) == NULL)
2023-09-08T19:57:50,016         |   ^~
2023-09-08T19:57:53,480   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:53,481                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:53,482                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2023-09-08T19:57:53,482   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:53,483      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:53,483         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:53,484   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:53,484                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:53,485   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:53,486     117 |     struct unary_function
2023-09-08T19:57:53,486         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:53,876   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:53,877   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:53,877     105 |   if (&(node) == NULL)
2023-09-08T19:57:53,878         |               ^
2023-09-08T19:57:53,878   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2023-09-08T19:57:53,879     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:53,880         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:54,362   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:54,363     105 |   if (&(node) == NULL)
2023-09-08T19:57:54,364         |   ^~
2023-09-08T19:57:57,630   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:57:57,631                    from ./base//sbml/Model.h:426,
2023-09-08T19:57:57,632                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2023-09-08T19:57:57,633   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:57,633      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:57,634         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:57,635   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:57,635                    from ./base//sbml/Model.h:424:
2023-09-08T19:57:57,636   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:57,637     117 |     struct unary_function
2023-09-08T19:57:57,637         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:58,027   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:58,028   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:58,028     104 |   if (&(node) == NULL)
2023-09-08T19:57:58,029         |               ^
2023-09-08T19:57:58,030   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2023-09-08T19:57:58,031     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:58,031         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:58,511   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:58,512     104 |   if (&(node) == NULL)
2023-09-08T19:57:58,513         |   ^~
2023-09-08T19:58:01,766   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:01,766                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:01,767                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2023-09-08T19:58:01,767   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:01,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:01,768         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:01,769   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:01,769                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:01,770   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:01,771     117 |     struct unary_function
2023-09-08T19:58:01,771         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:04,341   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2023-09-08T19:58:04,341   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2023-09-08T19:58:04,342     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:04,342         |                          ^~
2023-09-08T19:58:04,343   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2023-09-08T19:58:04,344     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:04,345         |                      ^~~~~~~
2023-09-08T19:58:04,345   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2023-09-08T19:58:04,346     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:04,347         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:58:04,348   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2023-09-08T19:58:04,348     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:04,349         |                         ^~
2023-09-08T19:58:04,350   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2023-09-08T19:58:04,351     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:04,351         |                   ^~~~~~~~~
2023-09-08T19:58:04,352   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2023-09-08T19:58:04,353     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:04,353         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T19:58:15,578   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:58:15,578                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:15,579                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:15,579                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2023-09-08T19:58:15,580                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2023-09-08T19:58:15,581   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:15,582      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:15,582         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:15,583   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:15,584                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2023-09-08T19:58:15,585   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:15,585     117 |     struct unary_function
2023-09-08T19:58:15,586         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:19,439   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:19,439                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:19,440                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2023-09-08T19:58:19,440   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:19,441      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:19,441         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:19,442   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:19,442                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:19,443   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:19,443     117 |     struct unary_function
2023-09-08T19:58:19,444         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:19,838   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:58:19,839   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:58:19,839     100 |   if (&(node) == NULL)
2023-09-08T19:58:19,840         |               ^
2023-09-08T19:58:19,841   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2023-09-08T19:58:19,842      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:58:19,842         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:20,327   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:20,327     100 |   if (&(node) == NULL)
2023-09-08T19:58:20,328         |   ^~
2023-09-08T19:58:23,600   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:23,600                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:23,601                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2023-09-08T19:58:23,602   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:23,603      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:23,604         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:23,604   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:23,605                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:23,605   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:23,606     117 |     struct unary_function
2023-09-08T19:58:23,607         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:23,997   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:58:23,998   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:58:23,998     103 |   if (&(node) == NULL)
2023-09-08T19:58:23,999         |               ^
2023-09-08T19:58:24,000   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2023-09-08T19:58:24,001     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:58:24,002         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:24,485   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:24,486     103 |   if (&(node) == NULL)
2023-09-08T19:58:24,486         |   ^~
2023-09-08T19:58:27,766   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:27,767                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:27,767                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2023-09-08T19:58:27,768   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:27,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:27,769         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:27,769   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:27,770                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:27,771   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:27,771     117 |     struct unary_function
2023-09-08T19:58:27,772         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:32,759   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:58:32,759                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:32,760                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:32,761                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2023-09-08T19:58:32,761   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:32,762      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:32,763         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:32,764   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:32,765                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:58:32,766                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:58:32,767                    from ./base//sbml/SBO.h:197,
2023-09-08T19:58:32,769                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2023-09-08T19:58:32,770   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:32,770     117 |     struct unary_function
2023-09-08T19:58:32,771         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:36,765   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:36,765                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:36,766                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2023-09-08T19:58:36,767   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:36,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:36,768         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:36,769   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:36,770                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:36,770   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:36,771     117 |     struct unary_function
2023-09-08T19:58:36,772         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:41,229   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:41,230                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:41,231                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2023-09-08T19:58:41,232   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:41,233      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:41,233         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:41,234   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:41,234                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:41,235   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:41,235     117 |     struct unary_function
2023-09-08T19:58:41,236         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:45,892   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:58:45,893                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:45,893                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:45,894                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T19:58:45,894                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2023-09-08T19:58:45,895                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2023-09-08T19:58:45,895   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:45,896      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:45,897         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:45,897   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:45,898                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:58:45,898                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:58:45,899                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:58:45,900                    from ./base//sbml/SBase.h:146,
2023-09-08T19:58:45,900                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2023-09-08T19:58:45,901   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:45,902     117 |     struct unary_function
2023-09-08T19:58:45,903         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:50,971   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:50,972                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:50,972                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2023-09-08T19:58:50,973   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:50,974      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:50,975         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:50,975   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:50,976                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:50,977   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:50,977     117 |     struct unary_function
2023-09-08T19:58:50,978         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:54,849   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:54,849                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:54,850                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2023-09-08T19:58:54,851   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:54,851      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:54,852         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:54,853   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:54,854                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:54,855   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:54,855     117 |     struct unary_function
2023-09-08T19:58:54,855         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:58,739   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:58:58,740                    from ./base//sbml/Model.h:426,
2023-09-08T19:58:58,740                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2023-09-08T19:58:58,740   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:58,741      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:58,741         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:58,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:58,742                    from ./base//sbml/Model.h:424:
2023-09-08T19:58:58,743   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:58,743     117 |     struct unary_function
2023-09-08T19:58:58,744         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:02,643   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:59:02,643                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:59:02,644                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:59:02,645                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2023-09-08T19:59:02,645                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2023-09-08T19:59:02,646   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:02,646      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:02,647         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:02,648   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:02,649                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2023-09-08T19:59:02,649   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:02,650     117 |     struct unary_function
2023-09-08T19:59:02,651         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:08,101   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:08,101                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:08,102                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2023-09-08T19:59:08,102   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:08,103      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:08,104         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:08,104   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:08,105                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:08,106   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:08,106     117 |     struct unary_function
2023-09-08T19:59:08,107         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:12,664   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:12,665                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:12,666                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2023-09-08T19:59:12,667   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:12,667      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:12,668         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:12,669   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:12,670                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:12,670   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:12,671     117 |     struct unary_function
2023-09-08T19:59:12,671         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:16,563   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:16,563                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:16,563                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2023-09-08T19:59:16,564   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:16,564      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:16,565         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:16,565   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:16,565                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:16,566   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:16,566     117 |     struct unary_function
2023-09-08T19:59:16,567         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:20,694   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:20,694                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:20,695                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2023-09-08T19:59:20,695   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:20,696      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:20,697         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:20,697   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:20,698                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:20,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:20,699     117 |     struct unary_function
2023-09-08T19:59:20,700         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:24,870   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:24,870                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:24,871                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2023-09-08T19:59:24,872   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:24,872      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:24,873         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:24,874   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:24,874                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:24,875   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:24,875     117 |     struct unary_function
2023-09-08T19:59:24,876         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:29,012   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:29,013                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:29,013                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2023-09-08T19:59:29,014   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:29,015      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:29,016         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:29,016   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:29,017                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:29,018   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:29,019     117 |     struct unary_function
2023-09-08T19:59:29,019         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:32,989   In file included from ./base//sbml/UnitDefinition.h:257,
2023-09-08T19:59:32,990                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:59:32,990                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:59:32,991                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2023-09-08T19:59:32,991   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:32,992      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:32,993         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:32,993   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:32,994                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:59:32,994                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:59:32,995                    from ./base//sbml/SBO.h:197,
2023-09-08T19:59:32,996                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2023-09-08T19:59:32,996   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:32,997     117 |     struct unary_function
2023-09-08T19:59:32,997         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:37,034   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:37,034                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:37,035                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2023-09-08T19:59:37,035   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:37,036      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:37,037         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:37,038   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:37,038                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:37,039   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:37,040     117 |     struct unary_function
2023-09-08T19:59:37,040         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:41,278   In file included from ./base//sbml/FunctionDefinition.h:124,
2023-09-08T19:59:41,279                    from ./base//sbml/Model.h:426,
2023-09-08T19:59:41,279                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2023-09-08T19:59:41,280   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:41,281      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:41,282         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:41,283   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:41,284                    from ./base//sbml/Model.h:424:
2023-09-08T19:59:41,285   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:41,286     117 |     struct unary_function
2023-09-08T19:59:41,287         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:41,679   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:59:41,679   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:59:41,680     100 |   if (&(node) == NULL)
2023-09-08T19:59:41,681         |               ^
2023-09-08T19:59:41,681   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2023-09-08T19:59:41,682      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:59:41,683         |                                               ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:42,161   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:42,162     100 |   if (&(node) == NULL)
2023-09-08T19:59:42,162         |   ^~
2023-09-08T19:59:55,588   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T19:59:55,588   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:59:55,589      90 |   if (&orig == NULL)
2023-09-08T19:59:55,590         |             ^
2023-09-08T19:59:55,590   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2023-09-08T19:59:55,591      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2023-09-08T19:59:55,591         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,596   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T19:59:55,596   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:59:55,597     110 |   if (&rhs == NULL)
2023-09-08T19:59:55,597         |            ^
2023-09-08T19:59:55,598   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2023-09-08T19:59:55,598     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2023-09-08T19:59:55,599         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:59:55,600   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:59:55,601   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,601     149 |   if (&name == NULL || &value == NULL
2023-09-08T19:59:55,602         |             ^
2023-09-08T19:59:55,603   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2023-09-08T19:59:55,604     144 | XMLAttributes::add (const std::string& name,
2023-09-08T19:59:55,604         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,605   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,606     149 |   if (&name == NULL || &value == NULL
2023-09-08T19:59:55,607         |                               ^
2023-09-08T19:59:55,607   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2023-09-08T19:59:55,608     145 |                     const std::string& value,
2023-09-08T19:59:55,609         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,609   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2023-09-08T19:59:55,610     150 |                     || &namespaceURI == NULL
2023-09-08T19:59:55,610         |                                      ^
2023-09-08T19:59:55,611   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2023-09-08T19:59:55,612     146 |                     const std::string& namespaceURI,
2023-09-08T19:59:55,612         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T19:59:55,613   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T19:59:55,614     151 |                     || &prefix == NULL)
2023-09-08T19:59:55,615         |                                ^
2023-09-08T19:59:55,616   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2023-09-08T19:59:55,616     147 |                     const std::string& prefix)
2023-09-08T19:59:55,617         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,618   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T19:59:55,618   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,619     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T19:59:55,619         |               ^
2023-09-08T19:59:55,620   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2023-09-08T19:59:55,621     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T19:59:55,621         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,622   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,622     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T19:59:55,623         |                                 ^
2023-09-08T19:59:55,623   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2023-09-08T19:59:55,624     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T19:59:55,625         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,625   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T19:59:55,626   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,626     279 |   if (&name == NULL) return -1;
2023-09-08T19:59:55,627         |             ^
2023-09-08T19:59:55,628   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2023-09-08T19:59:55,628     277 | XMLAttributes::getIndex (const std::string& name) const
2023-09-08T19:59:55,629         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,630   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T19:59:55,631   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,631     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T19:59:55,632         |             ^
2023-09-08T19:59:55,633   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2023-09-08T19:59:55,634     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T19:59:55,634         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,635   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:59:55,636     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T19:59:55,636         |                             ^
2023-09-08T19:59:55,637   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2023-09-08T19:59:55,638     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T19:59:55,638         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:59:55,639   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T19:59:55,640   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,640     318 |   if (&triple  == NULL) return -1;
2023-09-08T19:59:55,641         |                ^
2023-09-08T19:59:55,642   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2023-09-08T19:59:55,643     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2023-09-08T19:59:55,643         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,644   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,644   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,645     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T19:59:55,645         |                ^
2023-09-08T19:59:55,646   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2023-09-08T19:59:55,646     527 |                          , bool&        value
2023-09-08T19:59:55,647         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,647   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,648     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T19:59:55,649         |                                          ^
2023-09-08T19:59:55,649   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2023-09-08T19:59:55,650     526 |                          , const std::string& name
2023-09-08T19:59:55,650         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,651   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,651   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,652     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T19:59:55,653         |               ^
2023-09-08T19:59:55,654   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2023-09-08T19:59:55,654     609 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T19:59:55,655         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,656   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,657     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T19:59:55,657         |                                 ^
2023-09-08T19:59:55,658   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2023-09-08T19:59:55,659     610 |                          , bool&            value
2023-09-08T19:59:55,660         |                            ~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,660   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,661   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,662     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T19:59:55,662         |                 ^
2023-09-08T19:59:55,663   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2023-09-08T19:59:55,664     641 |                          , double&      value
2023-09-08T19:59:55,664         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,665   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,666     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T19:59:55,667         |                                          ^
2023-09-08T19:59:55,667   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2023-09-08T19:59:55,668     640 |                          , const std::string& name
2023-09-08T19:59:55,669         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,669   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,670   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,670     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T19:59:55,671         |                                     ^
2023-09-08T19:59:55,671   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2023-09-08T19:59:55,672     787 |                          , long&        value
2023-09-08T19:59:55,672         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,673   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,674     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T19:59:55,674         |                                          ^
2023-09-08T19:59:55,675   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2023-09-08T19:59:55,675     786 |                                            , const std::string& name
2023-09-08T19:59:55,676         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,676   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,677   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,678     854 |   if (&triple == NULL) return false;
2023-09-08T19:59:55,678         |               ^
2023-09-08T19:59:55,679   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2023-09-08T19:59:55,679     847 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T19:59:55,680         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,681   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,682   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,682     943 |   if (&triple == NULL) return false;
2023-09-08T19:59:55,683         |               ^
2023-09-08T19:59:55,684   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2023-09-08T19:59:55,684     936 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T19:59:55,685         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,685   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,686   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,687    1035 |   if (&triple == NULL) return false;
2023-09-08T19:59:55,687         |               ^
2023-09-08T19:59:55,688   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2023-09-08T19:59:55,689    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T19:59:55,689         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:55,690   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,691   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T19:59:55,691    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T19:59:55,692         |                              ^
2023-09-08T19:59:55,692   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2023-09-08T19:59:55,693    1081 |                          , std::string& value
2023-09-08T19:59:55,694         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T19:59:55,694   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:59:55,695    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T19:59:55,695         |                                                      ^
2023-09-08T19:59:55,696   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2023-09-08T19:59:55,696    1080 |                          , const std::string& name
2023-09-08T19:59:55,697         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:55,697   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:55,698   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T19:59:55,698    1125 |   if (&triple == NULL) return false;
2023-09-08T19:59:55,699         |               ^
2023-09-08T19:59:55,699   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2023-09-08T19:59:55,700    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T19:59:55,701         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:59:56,116   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T19:59:56,117   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,117     318 |   if (&triple  == NULL) return -1;
2023-09-08T19:59:56,118         |   ^~
2023-09-08T19:59:56,129   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T19:59:56,130   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,131     279 |   if (&name == NULL) return -1;
2023-09-08T19:59:56,132         |   ^~
2023-09-08T19:59:56,132   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T19:59:56,133   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,134     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T19:59:56,134         |             ^
2023-09-08T19:59:56,135   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,135     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T19:59:56,136         |                             ^
2023-09-08T19:59:56,149   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T19:59:56,150   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,151      90 |   if (&orig == NULL)
2023-09-08T19:59:56,151         |   ^~
2023-09-08T19:59:56,152   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T19:59:56,153   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,154     110 |   if (&rhs == NULL)
2023-09-08T19:59:56,155         |   ^~
2023-09-08T19:59:56,155   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:59:56,156   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,156     149 |   if (&name == NULL || &value == NULL
2023-09-08T19:59:56,157         |             ^
2023-09-08T19:59:56,157   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,158     149 |   if (&name == NULL || &value == NULL
2023-09-08T19:59:56,158         |                               ^
2023-09-08T19:59:56,159   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,159     150 |                     || &namespaceURI == NULL
2023-09-08T19:59:56,160         |                                      ^
2023-09-08T19:59:56,160   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,161     151 |                     || &prefix == NULL)
2023-09-08T19:59:56,161         |                                ^
2023-09-08T19:59:56,162   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T19:59:56,162   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,163     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T19:59:56,163         |               ^
2023-09-08T19:59:56,164   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,165     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T19:59:56,166         |                                 ^
2023-09-08T19:59:56,166   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,167   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,168     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T19:59:56,169         |                                 ^
2023-09-08T19:59:56,170   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,170     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T19:59:56,171         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:59:56,172   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,172   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,173     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T19:59:56,174         |               ^
2023-09-08T19:59:56,174   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,175     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T19:59:56,176         |                                 ^
2023-09-08T19:59:56,177   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,177   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,178     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T19:59:56,179         |                                 ^
2023-09-08T19:59:56,179   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,180     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T19:59:56,180         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:59:56,181   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,181   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,182     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T19:59:56,183         |                                 ^
2023-09-08T19:59:56,183   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,184     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T19:59:56,184         |                           ^
2023-09-08T19:59:56,185   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,185   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,186     854 |   if (&triple == NULL) return false;
2023-09-08T19:59:56,187         |   ^~
2023-09-08T19:59:56,187   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,188   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,189     943 |   if (&triple == NULL) return false;
2023-09-08T19:59:56,190         |   ^~
2023-09-08T19:59:56,190   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,191   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,192    1035 |   if (&triple == NULL) return false;
2023-09-08T19:59:56,193         |   ^~
2023-09-08T19:59:56,193   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,194   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,195    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T19:59:56,195         |                                                      ^
2023-09-08T19:59:56,196   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,197    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T19:59:56,197         |                              ^
2023-09-08T19:59:56,198   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T19:59:56,199   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:56,200    1125 |   if (&triple == NULL) return false;
2023-09-08T19:59:56,200         |   ^~
2023-09-08T20:00:03,834   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T20:00:03,835   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:03,835     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T20:00:03,836         |                       ^
2023-09-08T20:00:03,837   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:03,837     322 |                     , const std::string& details
2023-09-08T20:00:03,838         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:03,838   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:03,839     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T20:00:03,839         |                   ^
2023-09-08T20:00:03,840   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:03,840     322 |                     , const std::string& details
2023-09-08T20:00:03,841         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:03,842   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:03,842     403 |   if (&details == NULL)
2023-09-08T20:00:03,843         |                ^
2023-09-08T20:00:03,843   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:03,844     322 |                     , const std::string& details
2023-09-08T20:00:03,845         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:03,848   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T20:00:03,848   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:03,849     428 |   if (&orig == NULL)
2023-09-08T20:00:03,850         |             ^
2023-09-08T20:00:03,850   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2023-09-08T20:00:03,851     426 | XMLError::XMLError(const XMLError& orig)
2023-09-08T20:00:03,852         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:03,853   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T20:00:03,853   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:03,854     455 |   if (&rhs == NULL)
2023-09-08T20:00:03,855         |            ^
2023-09-08T20:00:03,856   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2023-09-08T20:00:03,856     453 | XMLError::operator=(const XMLError& rhs)
2023-09-08T20:00:03,857         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:04,269   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T20:00:04,269   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:04,270     428 |   if (&orig == NULL)
2023-09-08T20:00:04,271         |   ^~
2023-09-08T20:00:04,271   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T20:00:04,272   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:04,272     455 |   if (&rhs == NULL)
2023-09-08T20:00:04,273         |   ^~
2023-09-08T20:00:04,274   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T20:00:04,274   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:04,275     403 |   if (&details == NULL)
2023-09-08T20:00:04,276         |   ^~
2023-09-08T20:00:04,277   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:04,277     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T20:00:04,278         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:04,278   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:04,279     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T20:00:04,279         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:07,421   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T20:00:07,422      96 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T20:00:07,422         |                        ^~~~~~~~~~~~~~
2023-09-08T20:00:07,423   In file included from /usr/include/c++/12/functional:49,
2023-09-08T20:00:07,423                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2023-09-08T20:00:07,424   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T20:00:07,425     117 |     struct unary_function
2023-09-08T20:00:07,425         |            ^~~~~~~~~~~~~~
2023-09-08T20:00:07,426   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2023-09-08T20:00:07,426   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2023-09-08T20:00:07,427     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T20:00:07,428         |              ^
2023-09-08T20:00:07,428   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2023-09-08T20:00:07,429     118 | XMLErrorLog::add (const XMLError& error)
2023-09-08T20:00:07,430         |                   ~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:07,729   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:07,730     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T20:00:07,730         |   ^~
2023-09-08T20:00:09,729   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T20:00:09,729   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T20:00:09,730      57 |   if (&filename == NULL) return;
2023-09-08T20:00:09,731         |                 ^
2023-09-08T20:00:09,732   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2023-09-08T20:00:09,732      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2023-09-08T20:00:09,733         |                               ~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T20:00:09,924   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T20:00:09,925   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:09,925      57 |   if (&filename == NULL) return;
2023-09-08T20:00:09,926         |   ^~
2023-09-08T20:00:18,256   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:18,256   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:18,257      76 |   if (&orig == NULL)
2023-09-08T20:00:18,258         |             ^
2023-09-08T20:00:18,258   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2023-09-08T20:00:18,259      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2023-09-08T20:00:18,260         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:18,262   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T20:00:18,263   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:18,264      93 |   if (&rhs == NULL)
2023-09-08T20:00:18,264         |            ^
2023-09-08T20:00:18,265   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2023-09-08T20:00:18,266      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2023-09-08T20:00:18,266         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:18,267   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T20:00:18,267   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:18,268     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:18,269         |            ^
2023-09-08T20:00:18,270   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2023-09-08T20:00:18,270     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:18,271         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:18,272   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:18,273     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:18,273         |                               ^
2023-09-08T20:00:18,274   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2023-09-08T20:00:18,275     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:18,275         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:18,291   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T20:00:18,291   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:18,292     322 |   if (&prefix == NULL) return std::string();
2023-09-08T20:00:18,293         |               ^
2023-09-08T20:00:18,294   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2023-09-08T20:00:18,294     320 | XMLNamespaces::getURI (const std::string& prefix) const
2023-09-08T20:00:18,295         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:18,296   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T20:00:18,296   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:18,297     348 |   if (&uri == NULL) return false;
2023-09-08T20:00:18,298         |            ^
2023-09-08T20:00:18,298   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2023-09-08T20:00:18,299     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2023-09-08T20:00:18,300         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:18,301   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T20:00:18,301   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:18,302     359 |   if (&prefix == NULL) return false;
2023-09-08T20:00:18,302         |               ^
2023-09-08T20:00:18,303   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2023-09-08T20:00:18,304     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2023-09-08T20:00:18,305         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:18,306   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T20:00:18,306   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:18,307     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:18,308         |            ^
2023-09-08T20:00:18,308   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2023-09-08T20:00:18,309     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T20:00:18,310         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:18,310   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:18,311     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:18,312         |                               ^
2023-09-08T20:00:18,313   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2023-09-08T20:00:18,314     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T20:00:18,315         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:18,774   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T20:00:18,775   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,775     322 |   if (&prefix == NULL) return std::string();
2023-09-08T20:00:18,776         |   ^~
2023-09-08T20:00:18,777   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T20:00:18,778   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,778     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:18,779         |            ^
2023-09-08T20:00:18,779   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,780     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:18,781         |                               ^
2023-09-08T20:00:18,781   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T20:00:18,782   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,783     348 |   if (&uri == NULL) return false;
2023-09-08T20:00:18,783         |   ^~
2023-09-08T20:00:18,784   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T20:00:18,785   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,785     359 |   if (&prefix == NULL) return false;
2023-09-08T20:00:18,786         |   ^~
2023-09-08T20:00:18,787   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:18,787   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,788      76 |   if (&orig == NULL)
2023-09-08T20:00:18,789         |   ^~
2023-09-08T20:00:18,790   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T20:00:18,790   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,791      93 |   if (&rhs == NULL)
2023-09-08T20:00:18,792         |   ^~
2023-09-08T20:00:18,793   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T20:00:18,793   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,794     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:18,794         |            ^
2023-09-08T20:00:18,795   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:18,796     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:18,796         |                               ^
2023-09-08T20:00:23,179   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T20:00:23,180   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:23,181     197 |   if (&rhs == NULL)
2023-09-08T20:00:23,181         |            ^
2023-09-08T20:00:23,182   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2023-09-08T20:00:23,182     195 | XMLNode::operator=(const XMLNode& rhs)
2023-09-08T20:00:23,183         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:23,184   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T20:00:23,184   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T20:00:23,185     230 |   if (&(node) == NULL)
2023-09-08T20:00:23,185         |               ^
2023-09-08T20:00:23,186   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2023-09-08T20:00:23,187     226 | XMLNode::addChild (const XMLNode& node)
2023-09-08T20:00:23,187         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:23,188   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T20:00:23,189   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T20:00:23,190     267 |   if (&(node) == NULL)
2023-09-08T20:00:23,190         |               ^
2023-09-08T20:00:23,191   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2023-09-08T20:00:23,192     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2023-09-08T20:00:23,193         |                                       ~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:23,193   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T20:00:23,194   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:23,195     413 |   if (&name == NULL) return -1;
2023-09-08T20:00:23,195         |             ^
2023-09-08T20:00:23,196   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2023-09-08T20:00:23,197     411 | XMLNode::getIndex (const std::string& name) const
2023-09-08T20:00:23,197         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:23,198   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T20:00:23,199   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2023-09-08T20:00:23,200     435 |   if (&other == NULL) return false;
2023-09-08T20:00:23,200         |              ^
2023-09-08T20:00:23,201   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2023-09-08T20:00:23,202     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2023-09-08T20:00:23,202         |                 ~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:23,204   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T20:00:23,204   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T20:00:23,205     507 |   if (&stream == NULL) return;
2023-09-08T20:00:23,205         |               ^
2023-09-08T20:00:23,206   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2023-09-08T20:00:23,207     505 | XMLNode::write (XMLOutputStream& stream) const
2023-09-08T20:00:23,207         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:23,209   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T20:00:23,210   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2023-09-08T20:00:23,210     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T20:00:23,211         |               ^
2023-09-08T20:00:23,212   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2023-09-08T20:00:23,212     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2023-09-08T20:00:23,213         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:23,756   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T20:00:23,757   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,757     413 |   if (&name == NULL) return -1;
2023-09-08T20:00:23,758         |   ^~
2023-09-08T20:00:23,759   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T20:00:23,759   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,760     507 |   if (&stream == NULL) return;
2023-09-08T20:00:23,761         |   ^~
2023-09-08T20:00:23,777   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T20:00:23,777   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,778     197 |   if (&rhs == NULL)
2023-09-08T20:00:23,779         |   ^~
2023-09-08T20:00:23,780   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T20:00:23,781   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,782     230 |   if (&(node) == NULL)
2023-09-08T20:00:23,782         |   ^~
2023-09-08T20:00:23,783   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T20:00:23,784   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,784     267 |   if (&(node) == NULL)
2023-09-08T20:00:23,785         |   ^~
2023-09-08T20:00:23,785   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T20:00:23,786   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,787     435 |   if (&other == NULL) return false;
2023-09-08T20:00:23,787         |   ^~
2023-09-08T20:00:23,788   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T20:00:23,789   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:23,790     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T20:00:23,790         |   ^~
2023-09-08T20:00:30,091   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T20:00:30,092   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T20:00:30,093     220 |   if (&stream == NULL)
2023-09-08T20:00:30,093         |               ^
2023-09-08T20:00:30,094   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2023-09-08T20:00:30,095     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2023-09-08T20:00:30,095         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,096   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,096   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,097     236 |   if(&name == NULL) return;
2023-09-08T20:00:30,098         |            ^
2023-09-08T20:00:30,098   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2023-09-08T20:00:30,099     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:30,100         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,100   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T20:00:30,101   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,102     270 |   if(&triple == NULL) return;
2023-09-08T20:00:30,102         |              ^
2023-09-08T20:00:30,103   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2023-09-08T20:00:30,104     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2023-09-08T20:00:30,105         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,106   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,107   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,107     313 |   if (&name == NULL) return;
2023-09-08T20:00:30,108         |             ^
2023-09-08T20:00:30,109   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2023-09-08T20:00:30,110     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:30,110         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,111   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T20:00:30,112   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,112     344 |   if (&triple == NULL) return;
2023-09-08T20:00:30,113         |               ^
2023-09-08T20:00:30,114   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2023-09-08T20:00:30,115     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2023-09-08T20:00:30,115         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,116   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,117   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,118     374 |   if (&name == NULL) return;
2023-09-08T20:00:30,119         |             ^
2023-09-08T20:00:30,119   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2023-09-08T20:00:30,120     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:30,120         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,121   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T20:00:30,121   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,122     409 |   if (&triple == NULL) return;
2023-09-08T20:00:30,123         |               ^
2023-09-08T20:00:30,123   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2023-09-08T20:00:30,124     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2023-09-08T20:00:30,124         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,125   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T20:00:30,126   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,126     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:30,127         |              ^
2023-09-08T20:00:30,127   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2023-09-08T20:00:30,128     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T20:00:30,129         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,130   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,131     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:30,131         |                                ^
2023-09-08T20:00:30,132   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2023-09-08T20:00:30,133     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T20:00:30,133         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,134   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T20:00:30,135   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,136     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,136         |             ^
2023-09-08T20:00:30,137   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2023-09-08T20:00:30,138     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T20:00:30,138         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,139   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,140     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,141         |                               ^
2023-09-08T20:00:30,142   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2023-09-08T20:00:30,142     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T20:00:30,143         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,144   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T20:00:30,145   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,146     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,146         |               ^
2023-09-08T20:00:30,147   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2023-09-08T20:00:30,148     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T20:00:30,148         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,149   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,149     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,150         |                                 ^
2023-09-08T20:00:30,150   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2023-09-08T20:00:30,151     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T20:00:30,152         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,152   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T20:00:30,153   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,154     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,154         |             ^
2023-09-08T20:00:30,155   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2023-09-08T20:00:30,156     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T20:00:30,156         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,157   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,158     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,159         |                               ^
2023-09-08T20:00:30,159   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2023-09-08T20:00:30,160     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T20:00:30,161         |                                                           ~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,162   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T20:00:30,162   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,163     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,164         |             ^
2023-09-08T20:00:30,164   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2023-09-08T20:00:30,165     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T20:00:30,166         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,166   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,167     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,168         |                               ^
2023-09-08T20:00:30,168   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2023-09-08T20:00:30,169     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T20:00:30,170         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,171   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T20:00:30,171   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,172     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,173         |             ^
2023-09-08T20:00:30,173   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2023-09-08T20:00:30,174     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T20:00:30,174         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,175   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,176     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,176         |                               ^
2023-09-08T20:00:30,177   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2023-09-08T20:00:30,177     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T20:00:30,178         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,179   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T20:00:30,179   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,180     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,180         |               ^
2023-09-08T20:00:30,181   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2023-09-08T20:00:30,182     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T20:00:30,182         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,183   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,184     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,184         |                                 ^
2023-09-08T20:00:30,185   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2023-09-08T20:00:30,185     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T20:00:30,186         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,187   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T20:00:30,187   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,188     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,189         |             ^
2023-09-08T20:00:30,189   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2023-09-08T20:00:30,190     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T20:00:30,191         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,191   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,192     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,193         |                               ^
2023-09-08T20:00:30,193   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2023-09-08T20:00:30,194     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T20:00:30,195         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,196   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T20:00:30,196   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:30,197     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,197         |               ^
2023-09-08T20:00:30,198   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2023-09-08T20:00:30,198     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2023-09-08T20:00:30,199         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,200   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:30,200     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,201         |                                 ^
2023-09-08T20:00:30,201   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2023-09-08T20:00:30,202     734 |                                  , const unsigned int&  value )
2023-09-08T20:00:30,202         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,627   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,628   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,628     236 |   if(&name == NULL) return;
2023-09-08T20:00:30,629         |   ^~
2023-09-08T20:00:30,630   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,631   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,631     313 |   if (&name == NULL) return;
2023-09-08T20:00:30,632         |   ^~
2023-09-08T20:00:30,633   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T20:00:30,633   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,634     374 |   if (&name == NULL) return;
2023-09-08T20:00:30,635         |   ^~
2023-09-08T20:00:30,636   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T20:00:30,636   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,637     270 |   if(&triple == NULL) return;
2023-09-08T20:00:30,637         |   ^~
2023-09-08T20:00:30,638   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T20:00:30,638   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,639     344 |   if (&triple == NULL) return;
2023-09-08T20:00:30,640         |   ^~
2023-09-08T20:00:30,640   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T20:00:30,641   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,642     409 |   if (&triple == NULL) return;
2023-09-08T20:00:30,642         |   ^~
2023-09-08T20:00:30,643   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T20:00:30,644   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,645     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,645         |               ^
2023-09-08T20:00:30,646   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,647     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,647         |                                 ^
2023-09-08T20:00:30,648   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T20:00:30,648   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,649     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,649         |               ^
2023-09-08T20:00:30,650   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,651     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,651         |                                 ^
2023-09-08T20:00:30,652   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T20:00:30,652   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,653     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,654         |               ^
2023-09-08T20:00:30,654   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,655     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:30,656         |                                 ^
2023-09-08T20:00:30,656   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T20:00:30,657   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,658     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:30,659         |              ^
2023-09-08T20:00:30,660   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,660     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:30,661         |                                ^
2023-09-08T20:00:30,662   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T20:00:30,663   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,663     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,664         |             ^
2023-09-08T20:00:30,665   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,665     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,666         |                               ^
2023-09-08T20:00:30,667   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T20:00:30,667   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,668     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,669         |             ^
2023-09-08T20:00:30,670   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,671     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,671         |                               ^
2023-09-08T20:00:30,672   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T20:00:30,672   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,673     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,673         |             ^
2023-09-08T20:00:30,674   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,675     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,675         |                               ^
2023-09-08T20:00:30,676   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T20:00:30,676   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,677     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,678         |             ^
2023-09-08T20:00:30,678   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,679     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,679         |                               ^
2023-09-08T20:00:30,680   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T20:00:30,681   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,681     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,682         |             ^
2023-09-08T20:00:30,683   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,684     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:30,684         |                               ^
2023-09-08T20:00:30,685   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T20:00:30,686   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:30,687     220 |   if (&stream == NULL)
2023-09-08T20:00:30,688         |   ^~
2023-09-08T20:00:37,312   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T20:00:37,313   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2023-09-08T20:00:37,314     132 |   if (&chars == NULL)
2023-09-08T20:00:37,314         |              ^
2023-09-08T20:00:37,315   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2023-09-08T20:00:37,316     123 | XMLToken::XMLToken (  const std::string&  chars
2023-09-08T20:00:37,316         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,319   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T20:00:37,319   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:37,320     156 |   if (&orig == NULL)
2023-09-08T20:00:37,321         |             ^
2023-09-08T20:00:37,322   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2023-09-08T20:00:37,322     154 | XMLToken::XMLToken(const XMLToken& orig)
2023-09-08T20:00:37,323         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,326   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T20:00:37,327   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:37,327     195 |   if (&rhs == NULL)
2023-09-08T20:00:37,328         |            ^
2023-09-08T20:00:37,328   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2023-09-08T20:00:37,329     193 | XMLToken::operator=(const XMLToken& rhs)
2023-09-08T20:00:37,329         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:37,333   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T20:00:37,334   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T20:00:37,334     312 |         if(&attributes == NULL)
2023-09-08T20:00:37,335         |                        ^
2023-09-08T20:00:37,335   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2023-09-08T20:00:37,336     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2023-09-08T20:00:37,336         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T20:00:37,343   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:37,343   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2023-09-08T20:00:37,344     783 |         if(&namespaces == NULL)
2023-09-08T20:00:37,345         |                        ^
2023-09-08T20:00:37,346   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2023-09-08T20:00:37,346     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2023-09-08T20:00:37,347         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T20:00:37,348   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T20:00:37,349   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:37,350     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:37,350         |            ^
2023-09-08T20:00:37,351   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2023-09-08T20:00:37,352     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:37,353         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:37,354   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:37,354     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:37,355         |                               ^
2023-09-08T20:00:37,356   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2023-09-08T20:00:37,356     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:37,357         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,358   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T20:00:37,359   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,359    1058 |         if(&triple == NULL)
2023-09-08T20:00:37,360         |                    ^
2023-09-08T20:00:37,361   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2023-09-08T20:00:37,362    1055 | XMLToken::setTriple(const XMLTriple& triple)
2023-09-08T20:00:37,363         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,635   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T20:00:37,636   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,636     312 |         if(&attributes == NULL)
2023-09-08T20:00:37,637         |         ^~
2023-09-08T20:00:37,638   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:37,638   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,639     783 |         if(&namespaces == NULL)
2023-09-08T20:00:37,639         |         ^~
2023-09-08T20:00:37,640   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T20:00:37,640   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,641     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:37,641         |            ^
2023-09-08T20:00:37,642   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,642     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:37,643         |                               ^
2023-09-08T20:00:37,643   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T20:00:37,644   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,645    1058 |         if(&triple == NULL)
2023-09-08T20:00:37,645         |         ^~
2023-09-08T20:00:37,658   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T20:00:37,659   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,659     132 |   if (&chars == NULL)
2023-09-08T20:00:37,660         |   ^~
2023-09-08T20:00:37,660   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T20:00:37,661   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,662     156 |   if (&orig == NULL)
2023-09-08T20:00:37,663         |   ^~
2023-09-08T20:00:37,664   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T20:00:37,664   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:37,665     195 |   if (&rhs == NULL)
2023-09-08T20:00:37,666         |   ^~
2023-09-08T20:00:41,998   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T20:00:41,999   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T20:00:42,000     188 |   if (&element == NULL) return;
2023-09-08T20:00:42,000         |                ^
2023-09-08T20:00:42,001   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2023-09-08T20:00:42,002     186 | XMLTokenizer::startElement (const XMLToken& element)
2023-09-08T20:00:42,003         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:42,004   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T20:00:42,004   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T20:00:42,005     234 |   else if (&element != NULL)
2023-09-08T20:00:42,006         |                     ^
2023-09-08T20:00:42,007   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2023-09-08T20:00:42,007     220 | XMLTokenizer::endElement (const XMLToken& element)
2023-09-08T20:00:42,008         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:42,008   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T20:00:42,009   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2023-09-08T20:00:42,009     247 |   if (&data == NULL) return;
2023-09-08T20:00:42,010         |             ^
2023-09-08T20:00:42,010   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2023-09-08T20:00:42,011     245 | XMLTokenizer::characters (const XMLToken& data)
2023-09-08T20:00:42,012         |                           ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:42,340   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T20:00:42,340   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:42,341     188 |   if (&element == NULL) return;
2023-09-08T20:00:42,341         |   ^~
2023-09-08T20:00:42,342   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T20:00:42,342   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:42,343     234 |   else if (&element != NULL)
2023-09-08T20:00:42,344         |        ^~
2023-09-08T20:00:42,344   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T20:00:42,345   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:42,346     247 |   if (&data == NULL) return;
2023-09-08T20:00:42,347         |   ^~
2023-09-08T20:00:45,317   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:45,317   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:45,318      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:45,318         |              ^
2023-09-08T20:00:45,319   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2023-09-08T20:00:45,320      58 | XMLTriple::XMLTriple (  const std::string&  name
2023-09-08T20:00:45,320         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:45,321   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:45,321      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:45,322         |                                ^
2023-09-08T20:00:45,322   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2023-09-08T20:00:45,323      59 |                       , const std::string&  uri
2023-09-08T20:00:45,324         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:45,324   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:45,325      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:45,326         |                                                     ^
2023-09-08T20:00:45,326   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2023-09-08T20:00:45,327      60 |                       , const std::string&  prefix )
2023-09-08T20:00:45,327         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:45,328   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T20:00:45,329   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2023-09-08T20:00:45,329      81 |   if (&triplet == NULL)
2023-09-08T20:00:45,330         |                ^
2023-09-08T20:00:45,330   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2023-09-08T20:00:45,331      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2023-09-08T20:00:45,331         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:45,334   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T20:00:45,335   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:45,335     117 |   if (&orig == NULL)
2023-09-08T20:00:45,336         |             ^
2023-09-08T20:00:45,336   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2023-09-08T20:00:45,337     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2023-09-08T20:00:45,337         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:45,339   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T20:00:45,340   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:45,340     136 |   if (&rhs == NULL)
2023-09-08T20:00:45,341         |            ^
2023-09-08T20:00:45,342   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2023-09-08T20:00:45,342     134 | XMLTriple::operator=(const XMLTriple& rhs)
2023-09-08T20:00:45,343         |                      ~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:45,539   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:45,539   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,540      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:45,541         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:45,542   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T20:00:45,542   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,543     117 |   if (&orig == NULL)
2023-09-08T20:00:45,543         |   ^~
2023-09-08T20:00:45,544   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T20:00:45,545   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,545     136 |   if (&rhs == NULL)
2023-09-08T20:00:45,546         |   ^~
2023-09-08T20:00:45,547   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T20:00:45,548   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,548      81 |   if (&triplet == NULL)
2023-09-08T20:00:45,549         |   ^~
2023-09-08T20:00:54,348   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-08T20:00:54,348   !!

2023-09-08T20:00:54,350           ********************************************************************************
2023-09-08T20:00:54,350           Please avoid running ``setup.py`` directly.
2023-09-08T20:00:54,351           Instead, use pypa/build, pypa/installer or other
2023-09-08T20:00:54,352           standards-based tools.

2023-09-08T20:00:54,353           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-08T20:00:54,354           ********************************************************************************

2023-09-08T20:00:54,355   !!
2023-09-08T20:00:54,355     self.initialize_options()
2023-09-08T20:01:14,666   Building wheel for python-libsbml (setup.py): finished with status 'done'
2023-09-08T20:01:15,066   Created wheel for python-libsbml: filename=python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl size=32812066 sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66
2023-09-08T20:01:15,067   Stored in directory: /tmp/pip-ephem-wheel-cache-z2ovvm6q/wheels/2f/1e/29/dac31b04b1fa748308d4d3d5a551bf069bb745525dc5acd16c
2023-09-08T20:01:15,085 Successfully built python-libsbml
2023-09-08T20:01:15,825 Removed build tracker: '/tmp/pip-build-tracker-ie49g1tm'