2023-09-08T19:26:07,566 Created temporary directory: /tmp/pip-build-tracker-83pmwp8j
2023-09-08T19:26:07,567 Initialized build tracking at /tmp/pip-build-tracker-83pmwp8j
2023-09-08T19:26:07,568 Created build tracker: /tmp/pip-build-tracker-83pmwp8j
2023-09-08T19:26:07,568 Entered build tracker: /tmp/pip-build-tracker-83pmwp8j
2023-09-08T19:26:07,569 Created temporary directory: /tmp/pip-wheel-9flrjpak
2023-09-08T19:26:07,572 Created temporary directory: /tmp/pip-ephem-wheel-cache-xazutb8c
2023-09-08T19:26:07,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T19:26:07,600 2 location(s) to search for versions of python-libsbml:
2023-09-08T19:26:07,600 * https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,600 * https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:07,601 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,602 Getting page https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:07,603 Found index url https://pypi.org/simple/
2023-09-08T19:26:07,783 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2023-09-08T19:26:07,866   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2023-09-08T19:26:07,867   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2023-09-08T19:26:07,868   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2023-09-08T19:26:07,869   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2023-09-08T19:26:07,869   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2023-09-08T19:26:07,870   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,871   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2023-09-08T19:26:07,871   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,872   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,873   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,874   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,875   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,876   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,877   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,878   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,879   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,880   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,881   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,882   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,883   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,884   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,885   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,885   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,886   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,886   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,887   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,888   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,888   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,889   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,889   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,890   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,890   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,891   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,892   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2023-09-08T19:26:07,893   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,893   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,894   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2023-09-08T19:26:07,894   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,895   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,895   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,896   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,897   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,897   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,898   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,899   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,899   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,900   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,900   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,901   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,902   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,902   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,903   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,903   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,904   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,904   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,905   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,906   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,906   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,907   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,907   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,908   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,909   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,909   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,910   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,910   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2023-09-08T19:26:07,911   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,911   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,912   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,912   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,913   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,914   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,914   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,915   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,915   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,916   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,917   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,917   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,918   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,919   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,919   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,920   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,920   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,921   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,921   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,922   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,922   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,923   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,923   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,924   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2023-09-08T19:26:07,925   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,925   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,926   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,927   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,927   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,927   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,928   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,928   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,929   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,929   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,930   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,931   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,932   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,932   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,933   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,933   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,934   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,935   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,935   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,936   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,936   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,937   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2023-09-08T19:26:07,937   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,938   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,938   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,939   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,940   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,940   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,941   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,941   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,942   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,943   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,943   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,944   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,944   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,945   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,945   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,946   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,946   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,947   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,948   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,948   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,949   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,949   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,950   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,951   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,951   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,952   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,952   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,953   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,953   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,954   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,954   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,955   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,955   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,956   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,957   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,957   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,958   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,959   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,959   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,959   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,960   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2023-09-08T19:26:07,960   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,961   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,962   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,962   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,963   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,963   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,964   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,964   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,965   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,966   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,966   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,967   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,967   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,968   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,968   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,969   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,969   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,970   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,971   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,971   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,972   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,972   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,973   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,974   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,974   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,975   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,976   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,976   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,976   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,977   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,977   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,978   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2023-09-08T19:26:07,979   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,979   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,980   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,981   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,981   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,982   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,982   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,983   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,984   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,984   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,985   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,985   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,986   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,986   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,987   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,987   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,988   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,988   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,989   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,990   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,990   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,991   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,992   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,992   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,993   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,993   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,994   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,994   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,995   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,996   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,996   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,997   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,997   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,998   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,999   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:07,999   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,000   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,000   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,001   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,001   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,002   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,002   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,003   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,003   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,004   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,005   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,005   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,006   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,007   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,007   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,008   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,008   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,008   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,009   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,009   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,010   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,011   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,012   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,012   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,013   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,014   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,014   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,015   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,016   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,016   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,016   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,017   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,017   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,018   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,019   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,019   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,020   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,020   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,021   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,021   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,022   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,023   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,023   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,024   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,024   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,025   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,025   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,026   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,026   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,027   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,028   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,028   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,029   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,029   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,030   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,031   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,031   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,032   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,032   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,033   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,033   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,034   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,035   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,035   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,036   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,036   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,037   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,038   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,038   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,039   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,040   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,040   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,041   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,041   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,041   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,042   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,043   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,043   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,044   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,044   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,045   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,046   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,047   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,047   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,048   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,048   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,049   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,049   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,050   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,050   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,051   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,052   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,052   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,053   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,053   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,054   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,055   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,055   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,056   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,056   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,057   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,057   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,058   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,058   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,059   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,059   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,060   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,061   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,061   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,062   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,063   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,063   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,064   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,064   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,065   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,065   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,066   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,066   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,067   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,067   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2023-09-08T19:26:08,068   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,069   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,069   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,070   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,071   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,071   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,072   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,072   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,073   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,073   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,074   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,075   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,075   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,076   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,076   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,077   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,077   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,078   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,079   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,079   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,080   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,080   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,081   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,081   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,082   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,082   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,083   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,084   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,084   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,085   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,086   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,086   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,087   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,088   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,088   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,089   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,089   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,090   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,090   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,091   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,091   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,092   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,093   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,093   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,094   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,095   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,096   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,096   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,096   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2023-09-08T19:26:08,097   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,097   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,098   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,099   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,099   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,100   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,100   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,101   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,101   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,102   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,103   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,104   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,104   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,104   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,105   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,105   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,106   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,107   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,107   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,108   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,108   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,109   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,110   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,110   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,111   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,111   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,112   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,112   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,113   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,113   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,114   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,115   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,115   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,116   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,116   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,117   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,117   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,118   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,119   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,119   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,120   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,120   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,121   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,121   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,122   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,122   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,123   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,124   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,124   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2023-09-08T19:26:08,125   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,126   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,127   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,127   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,128   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,128   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,129   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,129   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,130   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,130   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,131   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,132   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,132   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,133   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,134   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,135   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,136   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,136   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,137   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,137   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,138   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,139   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,140   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,141   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,142   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,143   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,144   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,145   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,146   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,147   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,148   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,149   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,150   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,151   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,152   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,153   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,154   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T19:26:08,155 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:08,156 Getting page https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:08,157 Found index url https://www.piwheels.org/simple/
2023-09-08T19:26:11,211 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2023-09-08T19:26:11,245   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,246   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,246   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,247   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,248   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,249   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,250   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,251   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,251   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,252   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,253   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,254   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,254   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,255   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,256   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,256   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,257   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,258   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,259   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,260   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,261   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,261   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,262   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,263   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,264   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,264   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,265   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,266   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,266   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,267   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,268   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,269   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,270   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,270   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,272   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,272   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,273   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,274   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,274   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,275   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,276   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,276   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,277   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,278   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,279   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,279   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,280   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,281   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,282   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,283   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,283   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,284   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,285   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,286   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,286   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,287   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,288   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,289   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,289   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,290   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,291   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,292   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,293   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,294   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,294   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,295   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,296   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,296   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,297   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,298   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,299   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,299   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,300   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,301   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T19:26:11,302 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T19:26:11,303 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2023-09-08T19:26:11,336 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2023-09-08T19:26:11,362 Collecting python-libsbml==5.10.0
2023-09-08T19:26:11,365   Created temporary directory: /tmp/pip-unpack-x3rpfdyr
2023-09-08T19:26:11,856   Downloading python-libsbml-5.10.0.tar.gz (3.2 MB)
2023-09-08T19:26:14,304   Added python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-83pmwp8j'
2023-09-08T19:26:14,306   Running setup.py (path:/tmp/pip-wheel-9flrjpak/python-libsbml_5c45ab92686c433cb0cdc427e724fc83/setup.py) egg_info for package python-libsbml
2023-09-08T19:26:14,307   Created temporary directory: /tmp/pip-pip-egg-info-9z81g6u0
2023-09-08T19:26:14,308   Preparing metadata (setup.py): started
2023-09-08T19:26:14,309   Running command python setup.py egg_info
2023-09-08T19:26:15,621   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T19:26:15,625   Source in /tmp/pip-wheel-9flrjpak/python-libsbml_5c45ab92686c433cb0cdc427e724fc83 has version 5.10.0, which satisfies requirement python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz
2023-09-08T19:26:15,626   Removed python-libsbml==5.10.0 from https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-83pmwp8j'
2023-09-08T19:26:15,629 Created temporary directory: /tmp/pip-unpack-ri5xpatf
2023-09-08T19:26:15,630 Created temporary directory: /tmp/pip-unpack-h725zf_w
2023-09-08T19:26:15,633 Building wheels for collected packages: python-libsbml
2023-09-08T19:26:15,637   Created temporary directory: /tmp/pip-wheel-xtxbig1t
2023-09-08T19:26:15,638   Building wheel for python-libsbml (setup.py): started
2023-09-08T19:26:15,639   Destination directory: /tmp/pip-wheel-xtxbig1t
2023-09-08T19:26:15,640   Running command python setup.py bdist_wheel
2023-09-08T19:26:20,174   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T19:26:20,174   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,174     569 |       register size_t l = 0;
2023-09-08T19:26:20,175         |                       ^
2023-09-08T19:26:20,176   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,176     570 |       register size_t r = iter->size - 1;
2023-09-08T19:26:20,177         |                       ^
2023-09-08T19:26:20,177   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,178     573 |         register size_t i = (l + r) >> 1;
2023-09-08T19:26:20,179         |                         ^
2023-09-08T19:26:20,179   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,180     576 |           register int compare = strcmp(name, iname);
2023-09-08T19:26:20,181         |                        ^~~~~~~
2023-09-08T19:26:20,182   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T19:26:20,183   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,183     620 |       register size_t i = 0;
2023-09-08T19:26:20,184         |                       ^
2023-09-08T19:26:20,186   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2023-09-08T19:26:20,186   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,187     639 |   register const unsigned char *u = (unsigned char *) ptr;
2023-09-08T19:26:20,187         |                                 ^
2023-09-08T19:26:20,187   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,188     640 |   register const unsigned char *eu =  u + sz;
2023-09-08T19:26:20,188         |                                 ^~
2023-09-08T19:26:20,189   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,190     642 |     register unsigned char uu = *u;
2023-09-08T19:26:20,190         |                            ^~
2023-09-08T19:26:20,191   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2023-09-08T19:26:20,192   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,193     654 |   register unsigned char *u = (unsigned char *) ptr;
2023-09-08T19:26:20,193         |                           ^
2023-09-08T19:26:20,194   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,194     655 |   register const unsigned char *eu = u + sz;
2023-09-08T19:26:20,195         |                                 ^~
2023-09-08T19:26:20,195   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,196     657 |     register char d = *(c++);
2023-09-08T19:26:20,196         |                   ^
2023-09-08T19:26:20,197   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,198     658 |     register unsigned char uu;
2023-09-08T19:26:20,199         |                            ^~
2023-09-08T19:26:20,210   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2023-09-08T19:26:20,210   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,211    1322 |       register int i;
2023-09-08T19:26:20,212         |                    ^
2023-09-08T19:26:20,213   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,213    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2023-09-08T19:26:20,214         |                         ^
2023-09-08T19:26:20,216   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T19:26:20,217    1342 |       register int i;
2023-09-08T19:26:20,217         |                    ^
2023-09-08T19:26:21,289   ./base/libsbml_wrap.cpp: At global scope:
2023-09-08T19:26:21,290   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:21,291    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2023-09-08T19:26:21,291         |                                                                 ^
2023-09-08T19:26:21,299   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2023-09-08T19:26:21,300   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:21,300    3204 |       old = std::set_unexpected(nh);
2023-09-08T19:26:21,301         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:26:21,301   In file included from /usr/include/c++/12/ios:39,
2023-09-08T19:26:21,302                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:26:21,302                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:26:21,302                    from ./base/libsbml_wrap.cpp:2956:
2023-09-08T19:26:21,303   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T19:26:21,303      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T19:26:21,304         |                      ^~~~~~~~~~~~~~
2023-09-08T19:26:21,304   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2023-09-08T19:26:21,305   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:21,305    3209 |       std::set_unexpected(old);
2023-09-08T19:26:21,306         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:26:21,306   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T19:26:21,307      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T19:26:21,307         |                      ^~~~~~~~~~~~~~
2023-09-08T19:26:22,124   In file included from ./base/libsbml.h:45,
2023-09-08T19:26:22,124                    from ./base/libsbml_wrap.cpp:3787:
2023-09-08T19:26:22,125   ./base//sbml/ListOf.h: At global scope:
2023-09-08T19:26:22,126   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:22,126      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:26:22,127         |                           ^~~~~~~~~~~~~~
2023-09-08T19:26:22,127   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:26:22,128                    from ./base/libsbml_wrap.cpp:2955:
2023-09-08T19:26:22,129   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:22,129     117 |     struct unary_function
2023-09-08T19:26:22,130         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:23,009   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:26:23,010                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:26:23,011                    from ./base/../swig/fbc-package.h:31,
2023-09-08T19:26:23,012                    from ./base/../swig/libsbml-packages.h:8,
2023-09-08T19:26:23,012                    from ./base/libsbml_wrap.cpp:3791:
2023-09-08T19:26:23,013   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,013     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:23,014         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:26:23,015   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:23,016     117 |     struct unary_function
2023-09-08T19:26:23,016         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:23,023   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,024     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:23,025         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:26:23,025   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:23,026     117 |     struct unary_function
2023-09-08T19:26:23,027         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:23,046   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:26:23,046   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,047     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:26:23,047         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:26:23,048   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:26:23,048     117 |     struct unary_function
2023-09-08T19:26:23,049         |            ^~~~~~~~~~~~~~
2023-09-08T19:26:23,264   ./base/libsbml_wrap.cpp:4695:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,265    4695 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2023-09-08T19:26:23,265         |                                    ^~~~~~~~~~~~~~~
2023-09-08T19:26:23,266   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:23,266     131 |     struct binary_function
2023-09-08T19:26:23,267         |            ^~~~~~~~~~~~~~~
2023-09-08T19:26:23,270   ./base/libsbml_wrap.cpp:4720:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,271    4720 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2023-09-08T19:26:23,271         |                                                ^~~~~~~~~~~~~~~
2023-09-08T19:26:23,272   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:23,273     131 |     struct binary_function
2023-09-08T19:26:23,273         |            ^~~~~~~~~~~~~~~
2023-09-08T19:26:23,276   ./base/libsbml_wrap.cpp:4730:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:26:23,277    4730 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2023-09-08T19:26:23,278         |                                                ^~~~~~~~~~~~~~~
2023-09-08T19:26:23,279   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T19:26:23,279     131 |     struct binary_function
2023-09-08T19:26:23,280         |            ^~~~~~~~~~~~~~~
2023-09-08T19:32:24,018   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:24,019                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:24,020                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:24,020                    from ./base/sbml/AlgebraicRule.cpp:49:
2023-09-08T19:32:24,021   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:24,021      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:24,022         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:24,023   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:24,024                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:24,024                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:24,025                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:24,026                    from ./base/sbml/AlgebraicRule.cpp:34:
2023-09-08T19:32:24,026   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:24,027     117 |     struct unary_function
2023-09-08T19:32:24,028         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:28,451   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:28,452                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:28,452                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:28,453                    from ./base/sbml/AssignmentRule.cpp:49:
2023-09-08T19:32:28,453   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:28,454      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:28,454         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:28,455   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:28,455                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:28,456                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:28,457                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:28,457                    from ./base/sbml/AssignmentRule.cpp:34:
2023-09-08T19:32:28,458   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:28,458     117 |     struct unary_function
2023-09-08T19:32:28,459         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:32,567   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:32,568                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:32,568                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:32,569                    from ./base/sbml/Compartment.cpp:41:
2023-09-08T19:32:32,569   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:32,570      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:32,570         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:32,571   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:32,576                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:32,576                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:32,577                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:32,578                    from ./base/sbml/Compartment.cpp:35:
2023-09-08T19:32:32,578   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:32,579     117 |     struct unary_function
2023-09-08T19:32:32,580         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:32,868   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T19:32:32,869   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:32,869     146 |   if (&orig == NULL)
2023-09-08T19:32:32,870         |             ^
2023-09-08T19:32:32,871   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2023-09-08T19:32:32,872     143 | Compartment::Compartment(const Compartment& orig) :
2023-09-08T19:32:32,873         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:32,873   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T19:32:32,874   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:32,875     175 |   if (&rhs == NULL)
2023-09-08T19:32:32,876         |            ^
2023-09-08T19:32:32,877   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2023-09-08T19:32:32,878     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2023-09-08T19:32:32,879         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,881   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T19:32:32,882   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,883     496 |   if (&(sid) == NULL)
2023-09-08T19:32:32,884         |              ^
2023-09-08T19:32:32,885   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2023-09-08T19:32:32,885     485 | Compartment::setId (const std::string& sid)
2023-09-08T19:32:32,886         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,886   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T19:32:32,887   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:32,888     521 |   if (&(name) == NULL)
2023-09-08T19:32:32,888         |               ^
2023-09-08T19:32:32,889   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2023-09-08T19:32:32,889     516 | Compartment::setName (const std::string& name)
2023-09-08T19:32:32,890         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:32,890   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T19:32:32,891   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,891     551 |   if (&(sid) == NULL)
2023-09-08T19:32:32,892         |              ^
2023-09-08T19:32:32,892   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2023-09-08T19:32:32,893     549 | Compartment::setCompartmentType (const std::string& sid)
2023-09-08T19:32:32,894         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,894   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T19:32:32,895   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,896     673 |   if (&(sid) == NULL)
2023-09-08T19:32:32,896         |              ^
2023-09-08T19:32:32,897   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2023-09-08T19:32:32,897     671 | Compartment::setUnits (const std::string& sid)
2023-09-08T19:32:32,898         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,899   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T19:32:32,900   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,901     695 |   if (&(sid) == NULL)
2023-09-08T19:32:32,901         |              ^
2023-09-08T19:32:32,902   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2023-09-08T19:32:32,903     693 | Compartment::setOutside (const std::string& sid)
2023-09-08T19:32:32,903         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,940   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T19:32:32,941   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,941    1534 |   if (&(sid) == NULL)
2023-09-08T19:32:32,942         |              ^
2023-09-08T19:32:32,943   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2023-09-08T19:32:32,943    1530 | ListOfCompartments::get (const std::string& sid) const
2023-09-08T19:32:32,944         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,945   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T19:32:32,946   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:32,947    1562 |   if (&(sid) != NULL)
2023-09-08T19:32:32,947         |              ^
2023-09-08T19:32:32,948   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2023-09-08T19:32:32,949    1557 | ListOfCompartments::remove (const std::string& sid)
2023-09-08T19:32:32,949         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:32,953   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2023-09-08T19:32:32,954   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:32,955    1640 |   catch (SBMLConstructorException)
2023-09-08T19:32:32,955         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:32,956   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:32,956   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:32,957    1656 |   catch (SBMLConstructorException)
2023-09-08T19:32:32,958         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:33,561   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T19:32:33,562   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,562     146 |   if (&orig == NULL)
2023-09-08T19:32:33,563         |   ^~
2023-09-08T19:32:33,563   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T19:32:33,564   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,564     175 |   if (&rhs == NULL)
2023-09-08T19:32:33,565         |   ^~
2023-09-08T19:32:33,566   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T19:32:33,567   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,567     496 |   if (&(sid) == NULL)
2023-09-08T19:32:33,568         |   ^~
2023-09-08T19:32:33,568   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T19:32:33,569   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,570     521 |   if (&(name) == NULL)
2023-09-08T19:32:33,570         |   ^~
2023-09-08T19:32:33,571   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T19:32:33,571   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,572     551 |   if (&(sid) == NULL)
2023-09-08T19:32:33,573         |   ^~
2023-09-08T19:32:33,573   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T19:32:33,574   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,574     673 |   if (&(sid) == NULL)
2023-09-08T19:32:33,575         |   ^~
2023-09-08T19:32:33,576   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T19:32:33,576   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,577     695 |   if (&(sid) == NULL)
2023-09-08T19:32:33,577         |   ^~
2023-09-08T19:32:33,578   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T19:32:33,579   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,579    1534 |   if (&(sid) == NULL)
2023-09-08T19:32:33,580         |   ^~
2023-09-08T19:32:33,581   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T19:32:33,582   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:33,582    1562 |   if (&(sid) != NULL)
2023-09-08T19:32:33,583         |   ^~
2023-09-08T19:32:41,565   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:41,566                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:41,566                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:41,567                    from ./base/sbml/CompartmentType.cpp:40:
2023-09-08T19:32:41,567   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:41,568      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:41,568         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:41,569   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:41,569                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:41,570                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:41,570                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:41,571                    from ./base/sbml/CompartmentType.cpp:33:
2023-09-08T19:32:41,571   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:41,572     117 |     struct unary_function
2023-09-08T19:32:41,572         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:41,867   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T19:32:41,868   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:41,868      92 |   if (&orig == NULL)
2023-09-08T19:32:41,869         |             ^
2023-09-08T19:32:41,870   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2023-09-08T19:32:41,870      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2023-09-08T19:32:41,871         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:41,872   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T19:32:41,872   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:41,873     110 |   if (&rhs == NULL)
2023-09-08T19:32:41,873         |            ^
2023-09-08T19:32:41,874   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2023-09-08T19:32:41,875     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2023-09-08T19:32:41,875         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:41,876   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T19:32:41,877   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:41,877     207 |   if (&(sid) == NULL)
2023-09-08T19:32:41,878         |              ^
2023-09-08T19:32:41,879   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2023-09-08T19:32:41,879     196 | CompartmentType::setId (const std::string& sid)
2023-09-08T19:32:41,880         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:41,881   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T19:32:41,881   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:41,882     232 |   if (&(name) == NULL)
2023-09-08T19:32:41,883         |               ^
2023-09-08T19:32:41,884   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2023-09-08T19:32:41,884     227 | CompartmentType::setName (const std::string& name)
2023-09-08T19:32:41,885         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:41,894   ./base/sbml/CompartmentType.cpp: At global scope:
2023-09-08T19:32:41,895   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:41,895     543 | struct IdEqCT : public unary_function<SBase*, bool>
2023-09-08T19:32:41,896         |                        ^~~~~~~~~~~~~~
2023-09-08T19:32:41,896   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:41,897     117 |     struct unary_function
2023-09-08T19:32:41,898         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:41,899   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T19:32:41,900   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:41,901     568 |   if (&(sid) == NULL)
2023-09-08T19:32:41,901         |              ^
2023-09-08T19:32:41,902   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2023-09-08T19:32:41,902     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2023-09-08T19:32:41,903         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:41,904   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T19:32:41,905   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:41,906     596 |   if (&(sid) != NULL)
2023-09-08T19:32:41,906         |              ^
2023-09-08T19:32:41,907   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2023-09-08T19:32:41,908     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2023-09-08T19:32:41,908         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:41,913   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2023-09-08T19:32:41,914   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:41,914     674 |   catch (SBMLConstructorException)
2023-09-08T19:32:41,915         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:41,916   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:41,916   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:41,917     690 |   catch (SBMLConstructorException)
2023-09-08T19:32:41,918         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:42,481   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T19:32:42,482   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,482     568 |   if (&(sid) == NULL)
2023-09-08T19:32:42,483         |   ^~
2023-09-08T19:32:42,484   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T19:32:42,485   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,486      92 |   if (&orig == NULL)
2023-09-08T19:32:42,487         |   ^~
2023-09-08T19:32:42,487   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T19:32:42,488   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,488     110 |   if (&rhs == NULL)
2023-09-08T19:32:42,489         |   ^~
2023-09-08T19:32:42,489   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T19:32:42,490   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,490     207 |   if (&(sid) == NULL)
2023-09-08T19:32:42,491         |   ^~
2023-09-08T19:32:42,491   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T19:32:42,492   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,492     232 |   if (&(name) == NULL)
2023-09-08T19:32:42,493         |   ^~
2023-09-08T19:32:42,497   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T19:32:42,497   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:42,498     596 |   if (&(sid) != NULL)
2023-09-08T19:32:42,498         |   ^~
2023-09-08T19:32:47,603   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:47,604                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:47,604                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:47,605                    from ./base/sbml/Constraint.cpp:43:
2023-09-08T19:32:47,606   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:47,606      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:47,607         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:47,607   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:47,608                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:47,609                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:47,609                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:47,610                    from ./base/sbml/Constraint.cpp:33:
2023-09-08T19:32:47,611   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:47,611     117 |     struct unary_function
2023-09-08T19:32:47,612         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:47,902   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T19:32:47,903   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:47,904     101 |   if (&orig == NULL)
2023-09-08T19:32:47,904         |             ^
2023-09-08T19:32:47,905   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2023-09-08T19:32:47,906      96 | Constraint::Constraint (const Constraint& orig) :
2023-09-08T19:32:47,906         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:47,907   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T19:32:47,908   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:47,909     122 |   if (&rhs == NULL)
2023-09-08T19:32:47,910         |            ^
2023-09-08T19:32:47,910   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2023-09-08T19:32:47,911     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2023-09-08T19:32:47,912         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:47,941   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2023-09-08T19:32:47,942   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:47,942     772 |   catch (SBMLConstructorException)
2023-09-08T19:32:47,943         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:47,943   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:47,944   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:47,944     788 |   catch (SBMLConstructorException)
2023-09-08T19:32:47,945         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:48,482   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T19:32:48,482   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:48,483     101 |   if (&orig == NULL)
2023-09-08T19:32:48,483         |   ^~
2023-09-08T19:32:48,484   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T19:32:48,485   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:48,485     122 |   if (&rhs == NULL)
2023-09-08T19:32:48,485         |   ^~
2023-09-08T19:32:53,141   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:53,142                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:53,143                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:53,143                    from ./base/sbml/Delay.cpp:45:
2023-09-08T19:32:53,144   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:53,144      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:53,145         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:53,146   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:53,146                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:53,147                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:53,148                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:53,148                    from ./base/sbml/Delay.cpp:33:
2023-09-08T19:32:53,149   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:53,150     117 |     struct unary_function
2023-09-08T19:32:53,150         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:53,437   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T19:32:53,438   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:53,439     100 |   if (&orig == NULL)
2023-09-08T19:32:53,439         |             ^
2023-09-08T19:32:53,440   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2023-09-08T19:32:53,441      96 | Delay::Delay (const Delay& orig) :
2023-09-08T19:32:53,441         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:32:53,442   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T19:32:53,442   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:53,443     122 |   if (&rhs == NULL)
2023-09-08T19:32:53,444         |            ^
2023-09-08T19:32:53,444   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2023-09-08T19:32:53,445     120 | Delay& Delay::operator=(const Delay& rhs)
2023-09-08T19:32:53,446         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:32:53,461   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2023-09-08T19:32:53,462   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:53,463     648 |   catch (SBMLConstructorException)
2023-09-08T19:32:53,463         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:53,464   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:53,464   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:53,465     664 |   catch (SBMLConstructorException)
2023-09-08T19:32:53,466         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:53,959   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T19:32:53,960   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:53,961     100 |   if (&orig == NULL)
2023-09-08T19:32:53,961         |   ^~
2023-09-08T19:32:53,962   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T19:32:53,962   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:53,963     122 |   if (&rhs == NULL)
2023-09-08T19:32:53,963         |   ^~
2023-09-08T19:32:58,199   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:32:58,199                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:32:58,200                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:32:58,200                    from ./base/sbml/Event.cpp:44:
2023-09-08T19:32:58,201   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:58,202      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:32:58,202         |                           ^~~~~~~~~~~~~~
2023-09-08T19:32:58,203   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:32:58,204                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:32:58,204                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:32:58,205                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:32:58,206                    from ./base/sbml/Event.cpp:33:
2023-09-08T19:32:58,206   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:58,207     117 |     struct unary_function
2023-09-08T19:32:58,208         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:58,506   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T19:32:58,507   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:32:58,507     134 |   if (&orig == NULL)
2023-09-08T19:32:58,508         |             ^
2023-09-08T19:32:58,509   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2023-09-08T19:32:58,509     127 | Event::Event (const Event& orig) :
2023-09-08T19:32:58,510         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:32:58,510   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T19:32:58,511   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:32:58,512     171 |   if (&rhs == NULL)
2023-09-08T19:32:58,512         |            ^
2023-09-08T19:32:58,513   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2023-09-08T19:32:58,514     169 | Event& Event::operator=(const Event& rhs)
2023-09-08T19:32:58,515         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,532   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T19:32:58,533   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:58,534     530 |   if (&(sid) == NULL)
2023-09-08T19:32:58,535         |              ^
2023-09-08T19:32:58,536   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2023-09-08T19:32:58,536     519 | Event::setId (const std::string& sid)
2023-09-08T19:32:58,537         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,537   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T19:32:58,537   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:32:58,538     556 |   if (&(name) == NULL)
2023-09-08T19:32:58,538         |               ^
2023-09-08T19:32:58,539   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2023-09-08T19:32:58,539     551 | Event::setName (const std::string& name)
2023-09-08T19:32:58,540         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:32:58,545   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T19:32:58,545   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:58,546     704 |   if (&(sid) == NULL)
2023-09-08T19:32:58,546         |              ^
2023-09-08T19:32:58,547   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2023-09-08T19:32:58,547     702 | Event::setTimeUnits (const std::string& sid)
2023-09-08T19:32:58,548         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,555   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2023-09-08T19:32:58,556   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:58,556    1079 |   return (&variable != NULL ) ?
2023-09-08T19:32:58,557         |                     ^
2023-09-08T19:32:58,558   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2023-09-08T19:32:58,559    1077 | Event::getEventAssignment (const std::string& variable) const
2023-09-08T19:32:58,559         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:58,560   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2023-09-08T19:32:58,561   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:58,562    1091 |   return (&variable != NULL ) ?
2023-09-08T19:32:58,563         |                     ^
2023-09-08T19:32:58,563   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2023-09-08T19:32:58,564    1089 | Event::getEventAssignment (const std::string& variable)
2023-09-08T19:32:58,565         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:58,565   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2023-09-08T19:32:58,566   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T19:32:58,567    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2023-09-08T19:32:58,567         |                     ^
2023-09-08T19:32:58,568   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2023-09-08T19:32:58,568    1122 | Event::removeEventAssignment (const std::string& variable)
2023-09-08T19:32:58,569         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:32:58,596   ./base/sbml/Event.cpp: At global scope:
2023-09-08T19:32:58,597   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:32:58,598    1741 | struct IdEqE : public unary_function<SBase*, bool>
2023-09-08T19:32:58,598         |                       ^~~~~~~~~~~~~~
2023-09-08T19:32:58,599   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:32:58,600     117 |     struct unary_function
2023-09-08T19:32:58,600         |            ^~~~~~~~~~~~~~
2023-09-08T19:32:58,601   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2023-09-08T19:32:58,601   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:58,602    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2023-09-08T19:32:58,603         |                ^
2023-09-08T19:32:58,603   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2023-09-08T19:32:58,604    1753 | ListOfEvents::get (const std::string& sid)
2023-09-08T19:32:58,604         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,605   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T19:32:58,605   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:58,606    1764 |   if (&sid == NULL) return NULL;
2023-09-08T19:32:58,606         |            ^
2023-09-08T19:32:58,607   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2023-09-08T19:32:58,607    1762 | ListOfEvents::get (const std::string& sid) const
2023-09-08T19:32:58,608         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,608   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T19:32:58,609   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:32:58,610    1787 |   if (&(sid) != NULL)
2023-09-08T19:32:58,611         |              ^
2023-09-08T19:32:58,611   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2023-09-08T19:32:58,612    1782 | ListOfEvents::remove (const std::string& sid)
2023-09-08T19:32:58,613         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:32:58,617   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2023-09-08T19:32:58,617   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:58,618    1866 |   catch (SBMLConstructorException)
2023-09-08T19:32:58,619         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:58,620   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:32:58,620   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:32:58,621    1882 |   catch (SBMLConstructorException)
2023-09-08T19:32:58,621         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:32:59,231   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T19:32:59,231   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,232    1764 |   if (&sid == NULL) return NULL;
2023-09-08T19:32:59,232         |   ^~
2023-09-08T19:32:59,234   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T19:32:59,235   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,235     171 |   if (&rhs == NULL)
2023-09-08T19:32:59,236         |   ^~
2023-09-08T19:32:59,240   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T19:32:59,241   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,242     530 |   if (&(sid) == NULL)
2023-09-08T19:32:59,243         |   ^~
2023-09-08T19:32:59,244   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T19:32:59,244   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,245     556 |   if (&(name) == NULL)
2023-09-08T19:32:59,245         |   ^~
2023-09-08T19:32:59,246   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T19:32:59,246   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,247     704 |   if (&(sid) == NULL)
2023-09-08T19:32:59,247         |   ^~
2023-09-08T19:32:59,250   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T19:32:59,251   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,251    1787 |   if (&(sid) != NULL)
2023-09-08T19:32:59,252         |   ^~
2023-09-08T19:32:59,256   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T19:32:59,257   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:32:59,257     134 |   if (&orig == NULL)
2023-09-08T19:32:59,258         |   ^~
2023-09-08T19:33:06,536   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:06,537                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:06,538                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:06,538                    from ./base/sbml/EventAssignment.cpp:44:
2023-09-08T19:33:06,539   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:06,539      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:06,540         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:06,540   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:06,541                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:06,542                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:06,542                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:06,543                    from ./base/sbml/EventAssignment.cpp:33:
2023-09-08T19:33:06,543   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:06,544     117 |     struct unary_function
2023-09-08T19:33:06,545         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:06,851   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T19:33:06,852   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:06,853     100 |   if (&orig == NULL)
2023-09-08T19:33:06,854         |             ^
2023-09-08T19:33:06,854   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2023-09-08T19:33:06,855      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2023-09-08T19:33:06,855         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:06,856   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T19:33:06,857   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:06,857     122 |   if (&rhs == NULL)
2023-09-08T19:33:06,858         |            ^
2023-09-08T19:33:06,859   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2023-09-08T19:33:06,860     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2023-09-08T19:33:06,860         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:06,861   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T19:33:06,862   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:06,863     219 |   if (&(sid) == NULL)
2023-09-08T19:33:06,863         |              ^
2023-09-08T19:33:06,864   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2023-09-08T19:33:06,864     217 | EventAssignment::setVariable (const std::string& sid)
2023-09-08T19:33:06,865         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:06,891   ./base/sbml/EventAssignment.cpp: At global scope:
2023-09-08T19:33:06,891   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:06,892     846 | struct IdEqEA : public unary_function<SBase*, bool>
2023-09-08T19:33:06,892         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:06,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:06,894     117 |     struct unary_function
2023-09-08T19:33:06,894         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:06,895   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T19:33:06,896   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:06,896     871 |   if (&(sid) == NULL)
2023-09-08T19:33:06,897         |              ^
2023-09-08T19:33:06,898   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2023-09-08T19:33:06,899     867 | ListOfEventAssignments::get (const std::string& sid) const
2023-09-08T19:33:06,899         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:06,900   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T19:33:06,901   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:06,901     899 |   if (&(sid) != NULL)
2023-09-08T19:33:06,902         |              ^
2023-09-08T19:33:06,903   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2023-09-08T19:33:06,903     894 | ListOfEventAssignments::remove (const std::string& sid)
2023-09-08T19:33:06,904         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:06,909   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2023-09-08T19:33:06,910   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:06,911     992 |   catch (SBMLConstructorException)
2023-09-08T19:33:06,911         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:06,912   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:06,913   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:06,913    1008 |   catch (SBMLConstructorException)
2023-09-08T19:33:06,914         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:07,496   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T19:33:07,497   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:07,498     871 |   if (&(sid) == NULL)
2023-09-08T19:33:07,498         |   ^~
2023-09-08T19:33:07,500   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T19:33:07,501   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:07,501     100 |   if (&orig == NULL)
2023-09-08T19:33:07,502         |   ^~
2023-09-08T19:33:07,503   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T19:33:07,503   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:07,503     122 |   if (&rhs == NULL)
2023-09-08T19:33:07,504         |   ^~
2023-09-08T19:33:07,504   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T19:33:07,505   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:07,505     219 |   if (&(sid) == NULL)
2023-09-08T19:33:07,506         |   ^~
2023-09-08T19:33:07,513   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T19:33:07,513   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:07,514     899 |   if (&(sid) != NULL)
2023-09-08T19:33:07,514         |   ^~
2023-09-08T19:33:15,682   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:15,683                    from ./base/sbml/FunctionDefinition.cpp:47:
2023-09-08T19:33:15,683   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:15,684      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:15,684         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:15,685   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:15,686                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:15,686                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:15,687                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:15,688                    from ./base/sbml/FunctionDefinition.cpp:35:
2023-09-08T19:33:15,689   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:15,689     117 |     struct unary_function
2023-09-08T19:33:15,690         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:16,038   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T19:33:16,039   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:16,039     102 |   if (&orig == NULL)
2023-09-08T19:33:16,040         |             ^
2023-09-08T19:33:16,041   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2023-09-08T19:33:16,041      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2023-09-08T19:33:16,042         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:16,043   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T19:33:16,044   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:16,044     125 |   if (&rhs == NULL)
2023-09-08T19:33:16,045         |            ^
2023-09-08T19:33:16,046   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2023-09-08T19:33:16,047     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2023-09-08T19:33:16,047         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:16,048   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T19:33:16,049   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:16,050     253 |   if (&(sid) == NULL)
2023-09-08T19:33:16,050         |              ^
2023-09-08T19:33:16,051   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2023-09-08T19:33:16,051     242 | FunctionDefinition::setId (const std::string& sid)
2023-09-08T19:33:16,052         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:16,052   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T19:33:16,053   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:33:16,054     278 |   if (&(name) == NULL)
2023-09-08T19:33:16,054         |               ^
2023-09-08T19:33:16,055   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2023-09-08T19:33:16,055     273 | FunctionDefinition::setName (const std::string& name)
2023-09-08T19:33:16,056         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:16,079   ./base/sbml/FunctionDefinition.cpp: At global scope:
2023-09-08T19:33:16,080   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:16,080     994 | struct IdEqFD : public unary_function<SBase*, bool>
2023-09-08T19:33:16,081         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:16,082   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:16,083     117 |     struct unary_function
2023-09-08T19:33:16,083         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:16,084   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T19:33:16,085   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:16,086    1019 |   if (&(sid) == NULL)
2023-09-08T19:33:16,086         |              ^
2023-09-08T19:33:16,087   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2023-09-08T19:33:16,087    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2023-09-08T19:33:16,088         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:16,089   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T19:33:16,090   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:16,090    1047 |   if (&(sid) != NULL)
2023-09-08T19:33:16,091         |              ^
2023-09-08T19:33:16,092   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2023-09-08T19:33:16,092    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2023-09-08T19:33:16,093         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:16,097   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2023-09-08T19:33:16,098   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:16,099    1124 |   catch (SBMLConstructorException)
2023-09-08T19:33:16,099         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:16,100   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:16,101   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:16,102    1140 |   catch (SBMLConstructorException)
2023-09-08T19:33:16,102         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:16,681   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T19:33:16,681   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,682    1019 |   if (&(sid) == NULL)
2023-09-08T19:33:16,682         |   ^~
2023-09-08T19:33:16,684   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T19:33:16,685   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,686     102 |   if (&orig == NULL)
2023-09-08T19:33:16,686         |   ^~
2023-09-08T19:33:16,687   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T19:33:16,687   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,688     125 |   if (&rhs == NULL)
2023-09-08T19:33:16,688         |   ^~
2023-09-08T19:33:16,689   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T19:33:16,689   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,690     253 |   if (&(sid) == NULL)
2023-09-08T19:33:16,691         |   ^~
2023-09-08T19:33:16,691   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T19:33:16,692   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,692     278 |   if (&(name) == NULL)
2023-09-08T19:33:16,693         |   ^~
2023-09-08T19:33:16,696   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T19:33:16,696   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:16,697    1047 |   if (&(sid) != NULL)
2023-09-08T19:33:16,698         |   ^~
2023-09-08T19:33:22,413   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:22,414                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:22,414                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:22,415                    from ./base/sbml/InitialAssignment.cpp:43:
2023-09-08T19:33:22,416   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:22,416      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:22,417         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:22,418   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:22,418                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:22,419                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:22,420                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:22,420                    from ./base/sbml/InitialAssignment.cpp:33:
2023-09-08T19:33:22,421   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:22,422     117 |     struct unary_function
2023-09-08T19:33:22,422         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:22,713   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T19:33:22,714   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:22,715      97 |   if (&orig == NULL)
2023-09-08T19:33:22,716         |             ^
2023-09-08T19:33:22,717   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2023-09-08T19:33:22,717      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2023-09-08T19:33:22,718         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:22,718   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T19:33:22,719   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:22,719     119 |   if (&rhs == NULL)
2023-09-08T19:33:22,720         |            ^
2023-09-08T19:33:22,720   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2023-09-08T19:33:22,721     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2023-09-08T19:33:22,722         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:22,722   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T19:33:22,723   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:22,723     232 |   if (&(sid) == NULL)
2023-09-08T19:33:22,724         |              ^
2023-09-08T19:33:22,725   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2023-09-08T19:33:22,725     230 | InitialAssignment::setSymbol (const std::string& sid)
2023-09-08T19:33:22,726         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:22,754   ./base/sbml/InitialAssignment.cpp: At global scope:
2023-09-08T19:33:22,755   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:22,756     843 | struct IdEqIA : public unary_function<SBase*, bool>
2023-09-08T19:33:22,757         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:22,757   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:22,758     117 |     struct unary_function
2023-09-08T19:33:22,759         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:22,760   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T19:33:22,761   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:22,762     868 |   if (&(sid) == NULL)
2023-09-08T19:33:22,762         |              ^
2023-09-08T19:33:22,763   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2023-09-08T19:33:22,764     864 | ListOfInitialAssignments::get (const std::string& sid) const
2023-09-08T19:33:22,764         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:22,766   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T19:33:22,767   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:22,768     896 |   if (&(sid) != NULL)
2023-09-08T19:33:22,769         |              ^
2023-09-08T19:33:22,769   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2023-09-08T19:33:22,770     891 | ListOfInitialAssignments::remove (const std::string& sid)
2023-09-08T19:33:22,771         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:22,777   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2023-09-08T19:33:22,777   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:22,778     989 |   catch (SBMLConstructorException)
2023-09-08T19:33:22,778         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:22,779   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:22,780   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:22,780    1005 |   catch (SBMLConstructorException)
2023-09-08T19:33:22,781         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:23,357   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T19:33:23,358   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:23,358     868 |   if (&(sid) == NULL)
2023-09-08T19:33:23,359         |   ^~
2023-09-08T19:33:23,361   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T19:33:23,361   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:23,362      97 |   if (&orig == NULL)
2023-09-08T19:33:23,363         |   ^~
2023-09-08T19:33:23,363   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T19:33:23,364   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:23,364     119 |   if (&rhs == NULL)
2023-09-08T19:33:23,365         |   ^~
2023-09-08T19:33:23,366   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T19:33:23,366   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:23,367     232 |   if (&(sid) == NULL)
2023-09-08T19:33:23,368         |   ^~
2023-09-08T19:33:23,374   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T19:33:23,374   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:23,375     896 |   if (&(sid) != NULL)
2023-09-08T19:33:23,376         |   ^~
2023-09-08T19:33:29,338   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:29,339                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:29,339                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:29,340                    from ./base/sbml/KineticLaw.cpp:45:
2023-09-08T19:33:29,341   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:29,341      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:29,342         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:29,343   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:29,343                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:29,344                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:29,345                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:29,345                    from ./base/sbml/KineticLaw.cpp:33:
2023-09-08T19:33:29,346   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:29,347     117 |     struct unary_function
2023-09-08T19:33:29,348         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:29,640   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T19:33:29,640   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:29,641     117 |   if (&orig == NULL)
2023-09-08T19:33:29,641         |             ^
2023-09-08T19:33:29,642   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2023-09-08T19:33:29,643     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2023-09-08T19:33:29,643         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:29,644   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T19:33:29,645   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:29,646     143 |   if (&rhs == NULL)
2023-09-08T19:33:29,646         |            ^
2023-09-08T19:33:29,647   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2023-09-08T19:33:29,648     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2023-09-08T19:33:29,648         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:29,660   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T19:33:29,661   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T19:33:29,661     363 |   if (&(formula) == NULL)
2023-09-08T19:33:29,662         |                  ^
2023-09-08T19:33:29,663   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2023-09-08T19:33:29,664     361 | KineticLaw::setFormula (const std::string& formula)
2023-09-08T19:33:29,665         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:33:29,665   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T19:33:29,666   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:29,667     435 |   if (&(sid) == NULL)
2023-09-08T19:33:29,668         |              ^
2023-09-08T19:33:29,669   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2023-09-08T19:33:29,669     432 | KineticLaw::setTimeUnits (const std::string& sid)
2023-09-08T19:33:29,670         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:29,671   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:29,672   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:29,673     463 |   if (&(sid) == NULL)
2023-09-08T19:33:29,673         |              ^
2023-09-08T19:33:29,674   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2023-09-08T19:33:29,675     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2023-09-08T19:33:29,675         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:29,686   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2023-09-08T19:33:29,686   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:29,687    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2023-09-08T19:33:29,688         |                ^
2023-09-08T19:33:29,689   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2023-09-08T19:33:29,690    1032 | KineticLaw::removeParameter (const std::string& sid)
2023-09-08T19:33:29,691         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:29,692   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2023-09-08T19:33:29,693   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:29,694    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2023-09-08T19:33:29,694         |                ^
2023-09-08T19:33:29,695   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2023-09-08T19:33:29,696    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2023-09-08T19:33:29,697         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:29,720   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2023-09-08T19:33:29,721   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:29,721    1611 |   catch (SBMLConstructorException)
2023-09-08T19:33:29,722         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:29,723   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:29,723   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:29,724    1627 |   catch (SBMLConstructorException)
2023-09-08T19:33:29,724         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:30,264   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T19:33:30,265   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:30,265     363 |   if (&(formula) == NULL)
2023-09-08T19:33:30,266         |   ^~
2023-09-08T19:33:30,270   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T19:33:30,271   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:30,272     143 |   if (&rhs == NULL)
2023-09-08T19:33:30,273         |   ^~
2023-09-08T19:33:30,275   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T19:33:30,276   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:30,277     435 |   if (&(sid) == NULL)
2023-09-08T19:33:30,277         |   ^~
2023-09-08T19:33:30,278   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:30,279   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:30,279     463 |   if (&(sid) == NULL)
2023-09-08T19:33:30,280         |   ^~
2023-09-08T19:33:30,284   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T19:33:30,285   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:30,286     117 |   if (&orig == NULL)
2023-09-08T19:33:30,286         |   ^~
2023-09-08T19:33:36,051   In file included from ./base/sbml/ListOf.cpp:37:
2023-09-08T19:33:36,052   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,053      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:36,053         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:36,054   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:33:36,054                    from ./base/sbml/ListOf.cpp:34:
2023-09-08T19:33:36,055   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,056     117 |     struct unary_function
2023-09-08T19:33:36,057         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:36,267   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,267      76 | struct Delete : public unary_function<SBase*, void>
2023-09-08T19:33:36,268         |                        ^~~~~~~~~~~~~~
2023-09-08T19:33:36,268   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,269     117 |     struct unary_function
2023-09-08T19:33:36,269         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:36,270   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,271      94 | struct Clone : public unary_function<SBase*, SBase*>
2023-09-08T19:33:36,271         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:36,272   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,273     117 |     struct unary_function
2023-09-08T19:33:36,273         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:36,293   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,294     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2023-09-08T19:33:36,294         |                                 ^~~~~~~~~~~~~~
2023-09-08T19:33:36,295   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,296     117 |     struct unary_function
2023-09-08T19:33:36,296         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:36,297   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,298     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2023-09-08T19:33:36,298         |                                     ^~~~~~~~~~~~~~
2023-09-08T19:33:36,299   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,300     117 |     struct unary_function
2023-09-08T19:33:36,301         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:36,301   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:36,302     537 | struct Write : public unary_function<SBase*, void>
2023-09-08T19:33:36,303         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:36,303   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:36,304     117 |     struct unary_function
2023-09-08T19:33:36,305         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:41,303   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:41,304                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:41,305                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:41,306                    from ./base/sbml/LocalParameter.cpp:42:
2023-09-08T19:33:41,306   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:41,307      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:41,308         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:41,309   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:41,309                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:41,310                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:41,311                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:41,311                    from ./base/sbml/LocalParameter.cpp:35:
2023-09-08T19:33:41,312   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:41,313     117 |     struct unary_function
2023-09-08T19:33:41,314         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:41,598   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T19:33:41,598   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:41,599     103 |   if (&orig == NULL)
2023-09-08T19:33:41,600         |             ^
2023-09-08T19:33:41,600   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2023-09-08T19:33:41,601     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2023-09-08T19:33:41,601         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:41,602   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T19:33:41,603   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:41,603     116 |   if (&orig == NULL)
2023-09-08T19:33:41,604         |             ^
2023-09-08T19:33:41,604   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2023-09-08T19:33:41,605     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2023-09-08T19:33:41,606         |                                ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:41,607   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T19:33:41,607   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:41,608     126 |   if (&rhs == NULL)
2023-09-08T19:33:41,609         |            ^
2023-09-08T19:33:41,609   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2023-09-08T19:33:41,610     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2023-09-08T19:33:41,611         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:41,612   ./base/sbml/LocalParameter.cpp: At global scope:
2023-09-08T19:33:41,613   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:41,613     386 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T19:33:41,614         |                       ^~~~~~~~~~~~~~
2023-09-08T19:33:41,615   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:41,615     117 |     struct unary_function
2023-09-08T19:33:41,616         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:41,617   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T19:33:41,618   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:41,618     411 |   if (&(sid) == NULL)
2023-09-08T19:33:41,619         |              ^
2023-09-08T19:33:41,620   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2023-09-08T19:33:41,621     407 | ListOfLocalParameters::get (const std::string& sid) const
2023-09-08T19:33:41,621         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:41,623   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T19:33:41,624   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:41,624     453 |   if (&(sid) != NULL)
2023-09-08T19:33:41,625         |              ^
2023-09-08T19:33:41,626   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2023-09-08T19:33:41,627     448 | ListOfLocalParameters::remove (const std::string& sid)
2023-09-08T19:33:41,627         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:41,631   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2023-09-08T19:33:41,632   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:41,633     533 |   catch (SBMLConstructorException)
2023-09-08T19:33:41,633         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:41,634   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:41,634   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:41,635     549 |   catch (SBMLConstructorException)
2023-09-08T19:33:41,636         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:42,196   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T19:33:42,197   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:42,198     411 |   if (&(sid) == NULL)
2023-09-08T19:33:42,198         |   ^~
2023-09-08T19:33:42,199   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T19:33:42,200   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:42,201     103 |   if (&orig == NULL)
2023-09-08T19:33:42,201         |   ^~
2023-09-08T19:33:42,202   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T19:33:42,203   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:42,204     116 |   if (&orig == NULL)
2023-09-08T19:33:42,204         |   ^~
2023-09-08T19:33:42,205   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T19:33:42,205   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:42,206     126 |   if (&rhs == NULL)
2023-09-08T19:33:42,207         |   ^~
2023-09-08T19:33:42,208   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T19:33:42,208   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:42,209     453 |   if (&(sid) != NULL)
2023-09-08T19:33:42,210         |   ^~
2023-09-08T19:33:46,934   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:33:46,935                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:33:46,936                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:33:46,936                    from ./base/sbml/Model.cpp:41:
2023-09-08T19:33:46,937   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:33:46,938      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:33:46,938         |                           ^~~~~~~~~~~~~~
2023-09-08T19:33:46,939   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:33:46,940                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:33:46,940                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:33:46,941                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:33:46,942                    from ./base/sbml/Model.cpp:33:
2023-09-08T19:33:46,943   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:33:46,944     117 |     struct unary_function
2023-09-08T19:33:46,944         |            ^~~~~~~~~~~~~~
2023-09-08T19:33:47,315   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T19:33:47,316   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:33:47,316     175 |   if (&orig == NULL)
2023-09-08T19:33:47,317         |             ^
2023-09-08T19:33:47,317   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2023-09-08T19:33:47,318     160 | Model::Model(const Model& orig) :
2023-09-08T19:33:47,319         |              ~~~~~~~~~~~~~^~~~
2023-09-08T19:33:47,320   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T19:33:47,321   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:33:47,321     216 |   if (&rhs == NULL)
2023-09-08T19:33:47,322         |            ^
2023-09-08T19:33:47,323   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2023-09-08T19:33:47,323     214 | Model& Model::operator=(const Model& rhs)
2023-09-08T19:33:47,324         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:33:47,375   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T19:33:47,375   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:33:47,376     718 |   if (&(sid) == NULL)
2023-09-08T19:33:47,377         |              ^
2023-09-08T19:33:47,377   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2023-09-08T19:33:47,378     707 | Model::setId (const std::string& sid)
2023-09-08T19:33:47,379         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:33:47,379   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T19:33:47,380   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:33:47,381     743 |   if (&(name) == NULL)
2023-09-08T19:33:47,382         |               ^
2023-09-08T19:33:47,383   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2023-09-08T19:33:47,384     738 | Model::setName (const std::string& name)
2023-09-08T19:33:47,384         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:33:47,385   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:47,386   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,387     773 |   if (&(units) == NULL)
2023-09-08T19:33:47,388         |                ^
2023-09-08T19:33:47,388   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2023-09-08T19:33:47,389     771 | Model::setSubstanceUnits (const std::string& units)
2023-09-08T19:33:47,390         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,390   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T19:33:47,391   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,392     799 |   if (&(units) == NULL)
2023-09-08T19:33:47,393         |                ^
2023-09-08T19:33:47,393   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2023-09-08T19:33:47,394     797 | Model::setTimeUnits (const std::string& units)
2023-09-08T19:33:47,395         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,396   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T19:33:47,396   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,397     825 |   if (&(units) == NULL)
2023-09-08T19:33:47,398         |                ^
2023-09-08T19:33:47,399   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2023-09-08T19:33:47,399     823 | Model::setVolumeUnits (const std::string& units)
2023-09-08T19:33:47,400         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,400   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T19:33:47,401   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,402     851 |   if (&(units) == NULL)
2023-09-08T19:33:47,402         |                ^
2023-09-08T19:33:47,403   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2023-09-08T19:33:47,403     849 | Model::setAreaUnits (const std::string& units)
2023-09-08T19:33:47,404         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,405   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T19:33:47,405   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,406     877 |   if (&(units) == NULL)
2023-09-08T19:33:47,406         |                ^
2023-09-08T19:33:47,407   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2023-09-08T19:33:47,408     875 | Model::setLengthUnits (const std::string& units)
2023-09-08T19:33:47,408         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,409   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T19:33:47,410   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:33:47,410     903 |   if (&(units) == NULL)
2023-09-08T19:33:47,411         |                ^
2023-09-08T19:33:47,412   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2023-09-08T19:33:47,412     901 | Model::setExtentUnits (const std::string& units)
2023-09-08T19:33:47,413         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:33:47,414   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T19:33:47,415   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T19:33:47,415     929 |   if (&(id) == NULL)
2023-09-08T19:33:47,416         |             ^
2023-09-08T19:33:47,417   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2023-09-08T19:33:47,418     927 | Model::setConversionFactor (const std::string& id)
2023-09-08T19:33:47,418         |                             ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T19:33:47,614   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2023-09-08T19:33:47,614   ./base/sbml/Model.cpp:6000:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:47,615    6000 |   catch (SBMLConstructorException)
2023-09-08T19:33:47,616         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:47,617   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:33:47,617   ./base/sbml/Model.cpp:6016:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:33:47,618    6016 |   catch (SBMLConstructorException)
2023-09-08T19:33:47,619         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:33:48,418   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T19:33:48,419   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,420     216 |   if (&rhs == NULL)
2023-09-08T19:33:48,421         |   ^~
2023-09-08T19:33:48,431   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T19:33:48,432   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,433     718 |   if (&(sid) == NULL)
2023-09-08T19:33:48,433         |   ^~
2023-09-08T19:33:48,434   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T19:33:48,434   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,435     743 |   if (&(name) == NULL)
2023-09-08T19:33:48,435         |   ^~
2023-09-08T19:33:48,436   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T19:33:48,436   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,437     773 |   if (&(units) == NULL)
2023-09-08T19:33:48,437         |   ^~
2023-09-08T19:33:48,438   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T19:33:48,439   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,439     799 |   if (&(units) == NULL)
2023-09-08T19:33:48,440         |   ^~
2023-09-08T19:33:48,440   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T19:33:48,441   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,441     825 |   if (&(units) == NULL)
2023-09-08T19:33:48,442         |   ^~
2023-09-08T19:33:48,442   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T19:33:48,443   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,444     851 |   if (&(units) == NULL)
2023-09-08T19:33:48,445         |   ^~
2023-09-08T19:33:48,445   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T19:33:48,446   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,447     877 |   if (&(units) == NULL)
2023-09-08T19:33:48,447         |   ^~
2023-09-08T19:33:48,448   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T19:33:48,449   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,450     903 |   if (&(units) == NULL)
2023-09-08T19:33:48,450         |   ^~
2023-09-08T19:33:48,451   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T19:33:48,452   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,452     929 |   if (&(id) == NULL)
2023-09-08T19:33:48,453         |   ^~
2023-09-08T19:33:48,476   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T19:33:48,476   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:33:48,477     175 |   if (&orig == NULL)
2023-09-08T19:33:48,478         |   ^~
2023-09-08T19:33:54,282   ./base/sbml/Model.cpp: In member function ‘void Model::populateListFormulaUnitsData()’:
2023-09-08T19:33:54,283   ./base/sbml/Model.cpp:5681:29: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
2023-09-08T19:33:54,284    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:54,285         |                             ^~
2023-09-08T19:33:54,285   ./base/sbml/Model.cpp:5681:22: note: directive argument in the range [0, 4294967294]
2023-09-08T19:33:54,286    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:54,287         |                      ^~~~~~~~~~
2023-09-08T19:33:54,288   ./base/sbml/Model.cpp:5681:14: note: ‘sprintf’ output between 8 and 17 bytes into a destination of size 12
2023-09-08T19:33:54,288    5681 |       sprintf(newId, "event_%u", countEvents);
2023-09-08T19:33:54,289         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:04,478   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:04,478                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:04,479                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:04,480                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2023-09-08T19:34:04,480   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:04,481      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:04,481         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:04,482   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:04,482                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:04,483                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:04,483                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:04,484                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2023-09-08T19:34:04,485   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:04,485     117 |     struct unary_function
2023-09-08T19:34:04,486         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:08,621   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:08,622                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:08,622                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:08,623                    from ./base/sbml/Parameter.cpp:42:
2023-09-08T19:34:08,624   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:08,624      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:08,625         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:08,626   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:08,627                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:08,627                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:08,628                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:08,628                    from ./base/sbml/Parameter.cpp:35:
2023-09-08T19:34:08,629   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:08,630     117 |     struct unary_function
2023-09-08T19:34:08,630         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:08,922   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T19:34:08,923   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:08,924     131 |   if (&orig == NULL)
2023-09-08T19:34:08,924         |             ^
2023-09-08T19:34:08,925   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2023-09-08T19:34:08,926     128 | Parameter::Parameter(const Parameter& orig) :
2023-09-08T19:34:08,926         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:08,927   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T19:34:08,928   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:08,928     155 |   if (&rhs == NULL)
2023-09-08T19:34:08,929         |            ^
2023-09-08T19:34:08,930   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2023-09-08T19:34:08,931     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2023-09-08T19:34:08,932         |                                 ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:08,933   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T19:34:08,933   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:08,934     342 |   if (&(sid) == NULL)
2023-09-08T19:34:08,934         |              ^
2023-09-08T19:34:08,935   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2023-09-08T19:34:08,936     331 | Parameter::setId (const std::string& sid)
2023-09-08T19:34:08,936         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:08,937   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T19:34:08,937   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:34:08,938     367 |   if (&(name) == NULL)
2023-09-08T19:34:08,939         |               ^
2023-09-08T19:34:08,939   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2023-09-08T19:34:08,940     362 | Parameter::setName (const std::string& name)
2023-09-08T19:34:08,941         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:08,941   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T19:34:08,942   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:34:08,942     409 |   if (&(units) == NULL)
2023-09-08T19:34:08,943         |                ^
2023-09-08T19:34:08,944   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2023-09-08T19:34:08,944     407 | Parameter::setUnits (const std::string& units)
2023-09-08T19:34:08,945         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:34:09,001   ./base/sbml/Parameter.cpp: At global scope:
2023-09-08T19:34:09,002   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:09,002    1523 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T19:34:09,003         |                       ^~~~~~~~~~~~~~
2023-09-08T19:34:09,004   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:09,004     117 |     struct unary_function
2023-09-08T19:34:09,005         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:09,006   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T19:34:09,007   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:09,008    1546 |   if (&(sid) == NULL)
2023-09-08T19:34:09,009         |              ^
2023-09-08T19:34:09,009   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2023-09-08T19:34:09,010    1542 | ListOfParameters::get (const std::string& sid) const
2023-09-08T19:34:09,011         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:09,012   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T19:34:09,012   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:09,013    1573 |   if (&(sid) != NULL)
2023-09-08T19:34:09,014         |              ^
2023-09-08T19:34:09,015   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2023-09-08T19:34:09,015    1568 | ListOfParameters::remove (const std::string& sid)
2023-09-08T19:34:09,016         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:09,019   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2023-09-08T19:34:09,020   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:09,021    1653 |   catch (SBMLConstructorException)
2023-09-08T19:34:09,022         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:09,022   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:09,023   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:09,024    1669 |   catch (SBMLConstructorException)
2023-09-08T19:34:09,024         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:09,623   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T19:34:09,624   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,624    1546 |   if (&(sid) == NULL)
2023-09-08T19:34:09,625         |   ^~
2023-09-08T19:34:09,626   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T19:34:09,627   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,628     131 |   if (&orig == NULL)
2023-09-08T19:34:09,628         |   ^~
2023-09-08T19:34:09,629   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T19:34:09,629   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,630     155 |   if (&rhs == NULL)
2023-09-08T19:34:09,631         |   ^~
2023-09-08T19:34:09,631   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T19:34:09,632   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,633     342 |   if (&(sid) == NULL)
2023-09-08T19:34:09,633         |   ^~
2023-09-08T19:34:09,634   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T19:34:09,634   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,635     367 |   if (&(name) == NULL)
2023-09-08T19:34:09,636         |   ^~
2023-09-08T19:34:09,637   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T19:34:09,637   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,638     409 |   if (&(units) == NULL)
2023-09-08T19:34:09,639         |   ^~
2023-09-08T19:34:09,649   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T19:34:09,649   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:09,650    1573 |   if (&(sid) != NULL)
2023-09-08T19:34:09,650         |   ^~
2023-09-08T19:34:18,130   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:18,131                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:18,131                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:18,132                    from ./base/sbml/Priority.cpp:45:
2023-09-08T19:34:18,133   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:18,134      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:18,134         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:18,135   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:18,136                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:18,136                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:18,137                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:18,138                    from ./base/sbml/Priority.cpp:33:
2023-09-08T19:34:18,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:18,139     117 |     struct unary_function
2023-09-08T19:34:18,139         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:18,426   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T19:34:18,427   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:18,428     100 |   if (&orig == NULL)
2023-09-08T19:34:18,428         |             ^
2023-09-08T19:34:18,429   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2023-09-08T19:34:18,429      96 | Priority::Priority (const Priority& orig) :
2023-09-08T19:34:18,430         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:18,431   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T19:34:18,431   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:18,432     122 |   if (&rhs == NULL)
2023-09-08T19:34:18,433         |            ^
2023-09-08T19:34:18,433   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2023-09-08T19:34:18,434     120 | Priority& Priority::operator=(const Priority& rhs)
2023-09-08T19:34:18,434         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:18,446   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2023-09-08T19:34:18,447   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:18,448     503 |   catch (SBMLConstructorException)
2023-09-08T19:34:18,449         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:18,449   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:18,450   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:18,451     519 |   catch (SBMLConstructorException)
2023-09-08T19:34:18,452         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:18,941   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T19:34:18,942   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:18,943     100 |   if (&orig == NULL)
2023-09-08T19:34:18,943         |   ^~
2023-09-08T19:34:18,944   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T19:34:18,945   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:18,946     122 |   if (&rhs == NULL)
2023-09-08T19:34:18,946         |   ^~
2023-09-08T19:34:22,847   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:22,847                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:22,848                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:22,849                    from ./base/sbml/RateRule.cpp:49:
2023-09-08T19:34:22,849   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:22,850      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:22,851         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:22,852   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:22,853                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:22,853                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:22,854                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:22,855                    from ./base/sbml/RateRule.cpp:34:
2023-09-08T19:34:22,855   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:22,856     117 |     struct unary_function
2023-09-08T19:34:22,856         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:26,796   In file included from ./base//sbml/SpeciesReference.h:286,
2023-09-08T19:34:26,797                    from ./base/sbml/Reaction.cpp:40:
2023-09-08T19:34:26,797   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:26,798      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:26,798         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:26,799   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:26,800                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:26,800                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:26,801                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:26,801                    from ./base/sbml/Reaction.cpp:33:
2023-09-08T19:34:26,802   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:26,802     117 |     struct unary_function
2023-09-08T19:34:26,803         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:27,239   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T19:34:27,240   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:27,240     185 |   if (&orig == NULL)
2023-09-08T19:34:27,241         |             ^
2023-09-08T19:34:27,242   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2023-09-08T19:34:27,243     178 | Reaction::Reaction (const Reaction& orig) :
2023-09-08T19:34:27,244         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:27,245   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T19:34:27,245   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:27,246     215 |   if (&rhs == NULL)
2023-09-08T19:34:27,246         |            ^
2023-09-08T19:34:27,247   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2023-09-08T19:34:27,248     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2023-09-08T19:34:27,249         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:27,262   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T19:34:27,263   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:27,264     549 |   if (&(sid) == NULL)
2023-09-08T19:34:27,264         |              ^
2023-09-08T19:34:27,265   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2023-09-08T19:34:27,266     538 | Reaction::setId (const std::string& sid)
2023-09-08T19:34:27,267         |                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:27,267   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T19:34:27,268   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:34:27,269     574 |   if (&(name) == NULL)
2023-09-08T19:34:27,269         |               ^
2023-09-08T19:34:27,270   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2023-09-08T19:34:27,271     569 | Reaction::setName (const std::string& name)
2023-09-08T19:34:27,271         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:27,272   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T19:34:27,273   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:27,274     665 |   if (&(sid) == NULL)
2023-09-08T19:34:27,274         |              ^
2023-09-08T19:34:27,275   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2023-09-08T19:34:27,275     663 | Reaction::setCompartment (const std::string& sid)
2023-09-08T19:34:27,276         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:27,328   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T19:34:27,329   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:27,330    1900 |   if (&(sid) == NULL)
2023-09-08T19:34:27,330         |              ^
2023-09-08T19:34:27,331   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2023-09-08T19:34:27,332    1896 | ListOfReactions::get (const std::string& sid) const
2023-09-08T19:34:27,333         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:27,334   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T19:34:27,334   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:27,335    1927 |   if (&(sid) != NULL)
2023-09-08T19:34:27,336         |              ^
2023-09-08T19:34:27,337   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2023-09-08T19:34:27,338    1922 | ListOfReactions::remove (const std::string& sid)
2023-09-08T19:34:27,338         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:27,342   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2023-09-08T19:34:27,343   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:27,343    2005 |   catch (SBMLConstructorException)
2023-09-08T19:34:27,344         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:27,345   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:27,346   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:27,347    2021 |   catch (SBMLConstructorException)
2023-09-08T19:34:27,347         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:27,974   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T19:34:27,975   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,975     215 |   if (&rhs == NULL)
2023-09-08T19:34:27,976         |   ^~
2023-09-08T19:34:27,980   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T19:34:27,981   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,982     549 |   if (&(sid) == NULL)
2023-09-08T19:34:27,982         |   ^~
2023-09-08T19:34:27,983   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T19:34:27,984   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,984     574 |   if (&(name) == NULL)
2023-09-08T19:34:27,985         |   ^~
2023-09-08T19:34:27,986   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T19:34:27,987   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,987     665 |   if (&(sid) == NULL)
2023-09-08T19:34:27,988         |   ^~
2023-09-08T19:34:27,989   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T19:34:27,989   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,990    1900 |   if (&(sid) == NULL)
2023-09-08T19:34:27,990         |   ^~
2023-09-08T19:34:27,993   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T19:34:27,993   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,994    1927 |   if (&(sid) != NULL)
2023-09-08T19:34:27,994         |   ^~
2023-09-08T19:34:27,998   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T19:34:27,999   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:27,999     185 |   if (&orig == NULL)
2023-09-08T19:34:28,000         |   ^~
2023-09-08T19:34:35,710   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:35,711                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:35,711                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:35,712                    from ./base/sbml/Rule.cpp:49:
2023-09-08T19:34:35,713   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:35,713      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:35,714         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:35,714   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:35,715                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:34:35,716                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:34:35,716                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:34:35,717                    from ./base/sbml/Rule.cpp:34:
2023-09-08T19:34:35,718   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:35,719     117 |     struct unary_function
2023-09-08T19:34:35,719         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:36,016   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T19:34:36,017   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:36,017     110 |   if (&orig == NULL)
2023-09-08T19:34:36,018         |             ^
2023-09-08T19:34:36,018   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2023-09-08T19:34:36,019     106 | Rule::Rule (const Rule& orig) :
2023-09-08T19:34:36,020         |             ~~~~~~~~~~~~^~~~
2023-09-08T19:34:36,022   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T19:34:36,023   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:36,023     137 |   if (&rhs == NULL)
2023-09-08T19:34:36,024         |            ^
2023-09-08T19:34:36,025   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2023-09-08T19:34:36,025     135 | Rule& Rule::operator=(const Rule& rhs)
2023-09-08T19:34:36,026         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:34:36,035   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T19:34:36,035   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T19:34:36,036     326 |   if (&(formula) == NULL)
2023-09-08T19:34:36,037         |                  ^
2023-09-08T19:34:36,037   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2023-09-08T19:34:36,038     324 | Rule::setFormula (const std::string& formula)
2023-09-08T19:34:36,039         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:34:36,043   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T19:34:36,043   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:36,044     400 |   if (&(sid) == NULL)
2023-09-08T19:34:36,044         |              ^
2023-09-08T19:34:36,045   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2023-09-08T19:34:36,045     398 | Rule::setVariable (const std::string& sid)
2023-09-08T19:34:36,046         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:36,047   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T19:34:36,047   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2023-09-08T19:34:36,048     428 |   if (&(sname) == NULL)
2023-09-08T19:34:36,048         |                ^
2023-09-08T19:34:36,049   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2023-09-08T19:34:36,050     425 | Rule::setUnits (const std::string& sname)
2023-09-08T19:34:36,050         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:34:36,105   ./base/sbml/Rule.cpp: At global scope:
2023-09-08T19:34:36,106   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:36,107    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2023-09-08T19:34:36,107         |                          ^~~~~~~~~~~~~~
2023-09-08T19:34:36,108   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:36,108     117 |     struct unary_function
2023-09-08T19:34:36,109         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:36,113   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T19:34:36,113   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:36,114    1442 |   if (&(sid) == NULL)
2023-09-08T19:34:36,114         |              ^
2023-09-08T19:34:36,115   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2023-09-08T19:34:36,115    1438 | ListOfRules::get (const std::string& sid) const
2023-09-08T19:34:36,116         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:36,121   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T19:34:36,122   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:34:36,123    1483 |   if (&(sid) != NULL)
2023-09-08T19:34:36,123         |              ^
2023-09-08T19:34:36,124   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2023-09-08T19:34:36,124    1478 | ListOfRules::remove (const std::string& sid)
2023-09-08T19:34:36,125         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:36,141   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2023-09-08T19:34:36,141   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,142    1672 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,143         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,143   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:36,144   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,145    1688 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,145         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,146   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2023-09-08T19:34:36,147   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,148    1704 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,149         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,149   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:36,150   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,151    1720 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,151         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,152   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2023-09-08T19:34:36,153   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,153    1736 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,154         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,155   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:34:36,155   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:36,156    1752 |   catch (SBMLConstructorException)
2023-09-08T19:34:36,156         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:36,746   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T19:34:36,747   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,747     326 |   if (&(formula) == NULL)
2023-09-08T19:34:36,748         |   ^~
2023-09-08T19:34:36,754   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T19:34:36,755   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,755    1442 |   if (&(sid) == NULL)
2023-09-08T19:34:36,756         |   ^~
2023-09-08T19:34:36,759   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T19:34:36,760   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,760     110 |   if (&orig == NULL)
2023-09-08T19:34:36,761         |   ^~
2023-09-08T19:34:36,762   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T19:34:36,762   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,763     137 |   if (&rhs == NULL)
2023-09-08T19:34:36,764         |   ^~
2023-09-08T19:34:36,764   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T19:34:36,765   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,765     400 |   if (&(sid) == NULL)
2023-09-08T19:34:36,766         |   ^~
2023-09-08T19:34:36,766   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T19:34:36,767   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,768     428 |   if (&(sname) == NULL)
2023-09-08T19:34:36,768         |   ^~
2023-09-08T19:34:36,776   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T19:34:36,777   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:36,778    1483 |   if (&(sid) != NULL)
2023-09-08T19:34:36,778         |   ^~
2023-09-08T19:34:47,208   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:47,209                    from ./base//sbml/Model.h:409,
2023-09-08T19:34:47,210                    from ./base/sbml/SBMLConvert.cpp:37:
2023-09-08T19:34:47,211   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:47,211      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:47,212         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:47,212   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:47,213                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:34:47,213                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:34:47,214                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:34:47,214                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:34:47,215                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:34:47,215                    from ./base/sbml/SBMLConvert.cpp:34:
2023-09-08T19:34:47,216   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:47,217     117 |     struct unary_function
2023-09-08T19:34:47,217         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:47,460   ./base/sbml/SBMLConvert.cpp: In member function ‘void Model::addDefinitionsForDefaultUnits()’:
2023-09-08T19:34:47,460   ./base/sbml/SBMLConvert.cpp:416:8: warning: variable ‘implicitArea’ set but not used [-Wunused-but-set-variable]
2023-09-08T19:34:47,461     416 |   bool implicitArea = false;
2023-09-08T19:34:47,461         |        ^~~~~~~~~~~~
2023-09-08T19:34:55,451   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:34:55,452                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:34:55,453                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:34:55,454                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:34:55,454                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:34:55,455                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2023-09-08T19:34:55,455                    from ./base/sbml/SBMLDocument.cpp:44:
2023-09-08T19:34:55,456   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:34:55,457      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:34:55,457         |                           ^~~~~~~~~~~~~~
2023-09-08T19:34:55,458   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:34:55,459                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:34:55,459                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:34:55,460                    from /usr/include/c++/12/ios:42,
2023-09-08T19:34:55,461                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:34:55,461                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:34:55,462                    from ./base/sbml/SBMLDocument.cpp:35:
2023-09-08T19:34:55,463   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:34:55,464     117 |     struct unary_function
2023-09-08T19:34:55,464         |            ^~~~~~~~~~~~~~
2023-09-08T19:34:55,884   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T19:34:55,885   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:34:55,886     261 |   if (&orig == NULL)
2023-09-08T19:34:55,886         |             ^
2023-09-08T19:34:55,887   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2023-09-08T19:34:55,888     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2023-09-08T19:34:55,889         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:34:55,889   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T19:34:55,890   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:34:55,891     302 |   if (&rhs == NULL)
2023-09-08T19:34:55,891         |            ^
2023-09-08T19:34:55,892   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2023-09-08T19:34:55,893     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2023-09-08T19:34:55,893         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:34:56,040   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2023-09-08T19:34:56,041   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:56,042    1868 |   catch (SBMLConstructorException)
2023-09-08T19:34:56,042         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:56,043   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2023-09-08T19:34:56,044   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:56,044    1884 |   catch (SBMLConstructorException)
2023-09-08T19:34:56,045         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:56,045   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2023-09-08T19:34:56,046   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:34:56,047    1900 |   catch (SBMLConstructorException)
2023-09-08T19:34:56,047         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:34:56,848   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T19:34:56,848   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:56,849     302 |   if (&rhs == NULL)
2023-09-08T19:34:56,850         |   ^~
2023-09-08T19:34:56,880   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T19:34:56,881   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:34:56,881     261 |   if (&orig == NULL)
2023-09-08T19:34:56,882         |   ^~
2023-09-08T19:35:05,905   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:05,906                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:05,906                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:05,907                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:05,908                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:05,908                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:35:05,909                    from ./base/sbml/SBMLError.cpp:41:
2023-09-08T19:35:05,910   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:05,910      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:05,911         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:05,912   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:05,912                    from ./base/sbml/SBMLError.cpp:33:
2023-09-08T19:35:05,913   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:05,913     117 |     struct unary_function
2023-09-08T19:35:05,914         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:10,682   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:10,683      86 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T19:35:10,683         |                        ^~~~~~~~~~~~~~
2023-09-08T19:35:10,684   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:35:10,684                    from ./base/sbml/SBMLErrorLog.cpp:34:
2023-09-08T19:35:10,685   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:10,685     117 |     struct unary_function
2023-09-08T19:35:10,686         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:14,509   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:14,509                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:14,510                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:14,510                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:14,511                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:14,511                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:35:14,512                    from ./base/sbml/SBMLNamespaces.cpp:35:
2023-09-08T19:35:14,513   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:14,513      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:14,514         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:14,514   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:14,515                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:35:14,515                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:35:14,516                    from ./base/sbml/SBMLNamespaces.cpp:34:
2023-09-08T19:35:14,517   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:14,517     117 |     struct unary_function
2023-09-08T19:35:14,518         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:14,872   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T19:35:14,873   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:35:14,874     175 |   if (&orig == NULL)
2023-09-08T19:35:14,874         |             ^
2023-09-08T19:35:14,875   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2023-09-08T19:35:14,876     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2023-09-08T19:35:14,877         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:35:14,877   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T19:35:14,878   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:35:14,879     225 |   if (&rhs == NULL)
2023-09-08T19:35:14,879         |            ^
2023-09-08T19:35:14,880   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2023-09-08T19:35:14,881     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2023-09-08T19:35:14,881         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:35:15,442   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T19:35:15,442   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:15,443     175 |   if (&orig == NULL)
2023-09-08T19:35:15,444         |   ^~
2023-09-08T19:35:15,445   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T19:35:15,445   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:15,447     225 |   if (&rhs == NULL)
2023-09-08T19:35:15,447         |   ^~
2023-09-08T19:35:20,456   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:20,457                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:20,457                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:20,458                    from ./base/sbml/SBMLReader.cpp:39:
2023-09-08T19:35:20,458   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:20,459      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:20,460         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:20,460   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:20,461                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:20,462                    from ./base/sbml/SBMLReader.cpp:33:
2023-09-08T19:35:20,462   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:20,463     117 |     struct unary_function
2023-09-08T19:35:20,463         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:20,753   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2023-09-08T19:35:20,753   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2023-09-08T19:35:20,754     139 |   if (&xml == NULL) return NULL;
2023-09-08T19:35:20,755         |            ^
2023-09-08T19:35:20,756   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2023-09-08T19:35:20,756     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2023-09-08T19:35:20,757         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:35:21,270   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:21,271     139 |   if (&xml == NULL) return NULL;
2023-09-08T19:35:21,271         |   ^~
2023-09-08T19:35:25,198   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:25,199                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:25,199                    from ./base/sbml/SBMLTransforms.cpp:33:
2023-09-08T19:35:25,200   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:25,201      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:25,201         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:25,202   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:25,203                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:35:25,203                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:35:25,204                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:35:25,205                    from ./base//sbml/SBase.h:154,
2023-09-08T19:35:25,205                    from ./base//sbml/SBMLTransforms.h:45:
2023-09-08T19:35:25,206   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:25,207     117 |     struct unary_function
2023-09-08T19:35:25,207         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:34,042   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:34,042                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:34,043                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:34,043                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:35:34,044                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:35:34,045                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2023-09-08T19:35:34,046   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:34,046      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:34,047         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:34,048   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:34,048                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:34,049                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:35:34,049                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:35:34,050   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:34,051     117 |     struct unary_function
2023-09-08T19:35:34,051         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:38,150   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:38,151                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:38,151                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:38,152                    from ./base/sbml/SBMLVisitor.cpp:34:
2023-09-08T19:35:38,153   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:38,153      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:38,154         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:38,154   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:38,155                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:35:38,156                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:35:38,156                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:35:38,157   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:38,158     117 |     struct unary_function
2023-09-08T19:35:38,158         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:42,185   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:35:42,185                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:35:42,186                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:35:42,187                    from ./base/sbml/SBMLWriter.cpp:42:
2023-09-08T19:35:42,187   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:42,188      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:42,189         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:42,189   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:42,190                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:42,191                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:42,191                    from /usr/include/c++/12/ios:42,
2023-09-08T19:35:42,192                    from ./base/sbml/SBMLWriter.cpp:33:
2023-09-08T19:35:42,192   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:42,193     117 |     struct unary_function
2023-09-08T19:35:42,194         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:42,480   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T19:35:42,481   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:35:42,482      85 |   if (&(name) == NULL)
2023-09-08T19:35:42,482         |               ^
2023-09-08T19:35:42,483   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2023-09-08T19:35:42,484      83 | SBMLWriter::setProgramName (const std::string& name)
2023-09-08T19:35:42,484         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:35:42,485   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T19:35:42,486   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2023-09-08T19:35:42,486     109 |   if (&(version) == NULL)
2023-09-08T19:35:42,487         |                  ^
2023-09-08T19:35:42,488   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2023-09-08T19:35:42,488     107 | SBMLWriter::setProgramVersion (const std::string& version)
2023-09-08T19:35:42,489         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:35:43,044   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T19:35:43,045   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:43,045      85 |   if (&(name) == NULL)
2023-09-08T19:35:43,046         |   ^~
2023-09-08T19:35:43,046   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T19:35:43,047   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:43,047     109 |   if (&(version) == NULL)
2023-09-08T19:35:43,048         |   ^~
2023-09-08T19:35:46,675   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:46,676     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2023-09-08T19:35:46,676         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:46,677   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:46,678                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:46,678                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:46,679                    from /usr/include/c++/12/iomanip:40,
2023-09-08T19:35:46,679                    from ./base/sbml/SBO.cpp:33:
2023-09-08T19:35:46,680   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:46,681     117 |     struct unary_function
2023-09-08T19:35:46,681         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:55,084   In file included from ./base//sbml/Parameter.h:182,
2023-09-08T19:35:55,085                    from ./base//sbml/KineticLaw.h:180,
2023-09-08T19:35:55,085                    from ./base/sbml/SBase.cpp:46:
2023-09-08T19:35:55,086   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:55,087      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:35:55,087         |                           ^~~~~~~~~~~~~~
2023-09-08T19:35:55,088   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:35:55,089                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:35:55,089                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:35:55,090                    from /usr/include/c++/12/ios:42,
2023-09-08T19:35:55,090                    from /usr/include/c++/12/istream:38,
2023-09-08T19:35:55,091                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:35:55,092                    from ./base/sbml/SBase.cpp:33:
2023-09-08T19:35:55,092   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:55,093     117 |     struct unary_function
2023-09-08T19:35:55,094         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:55,667   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:55,668      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2023-09-08T19:35:55,668         |                                    ^~~~~~~~~~~~~~
2023-09-08T19:35:55,669   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:55,670     117 |     struct unary_function
2023-09-08T19:35:55,671         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:55,672   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:35:55,672      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2023-09-08T19:35:55,673         |                                   ^~~~~~~~~~~~~~
2023-09-08T19:35:55,673   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:35:55,674     117 |     struct unary_function
2023-09-08T19:35:55,674         |            ^~~~~~~~~~~~~~
2023-09-08T19:35:55,698   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T19:35:55,698   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:35:55,699     380 |   if (&orig == NULL)
2023-09-08T19:35:55,700         |             ^
2023-09-08T19:35:55,700   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2023-09-08T19:35:55,701     378 | SBase::SBase(const SBase& orig)
2023-09-08T19:35:55,701         |              ~~~~~~~~~~~~~^~~~
2023-09-08T19:35:55,711   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T19:35:55,712   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:35:55,712     492 |   if (&rhs == NULL)
2023-09-08T19:35:55,713         |            ^
2023-09-08T19:35:55,714   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2023-09-08T19:35:55,714     490 | SBase& SBase::operator=(const SBase& rhs)
2023-09-08T19:35:55,715         |                         ~~~~~~~~~~~~~^~~
2023-09-08T19:35:55,736   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T19:35:55,737   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T19:35:55,737    1161 |   if (&(metaid) == NULL)
2023-09-08T19:35:55,738         |                 ^
2023-09-08T19:35:55,739   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2023-09-08T19:35:55,739    1159 | SBase::setMetaId (const std::string& metaid)
2023-09-08T19:35:55,740         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:35:55,746   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T19:35:55,747   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2023-09-08T19:35:55,748    1346 |   if (&(annotation) == NULL)
2023-09-08T19:35:55,748         |                     ^
2023-09-08T19:35:55,749   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2023-09-08T19:35:55,750    1344 | SBase::setAnnotation (const std::string& annotation)
2023-09-08T19:35:55,750         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:35:55,766   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T19:35:55,767   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2023-09-08T19:35:55,768    1716 |   if (&(notes) == NULL)
2023-09-08T19:35:55,768         |                ^
2023-09-08T19:35:55,769   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2023-09-08T19:35:55,770    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2023-09-08T19:35:55,771         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:35:55,805   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T19:35:55,806   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2023-09-08T19:35:55,806    2366 |   if (&(sboid) == NULL)
2023-09-08T19:35:55,808         |                ^
2023-09-08T19:35:55,808   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2023-09-08T19:35:55,809    2364 | SBase::setSBOTerm (const std::string &sboid)
2023-09-08T19:35:55,809         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:35:55,869   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2023-09-08T19:35:55,870   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2023-09-08T19:35:55,870    3605 |   if (&pkgName == NULL)
2023-09-08T19:35:55,871         |                ^
2023-09-08T19:35:55,871   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2023-09-08T19:35:55,872    3604 |   const std::string& pkgName = getPackageName();
2023-09-08T19:35:55,873         |                      ^~~~~~~
2023-09-08T19:35:56,064   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T19:35:56,064   ./base/sbml/SBase.cpp:5922:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:35:56,065    5922 |   if (&node == NULL) return;
2023-09-08T19:35:56,065         |             ^
2023-09-08T19:35:56,066   ./base/sbml/SBase.cpp:5920:22: note: ‘node’ declared here
2023-09-08T19:35:56,067    5920 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2023-09-08T19:35:56,067         |             ~~~~~~~~~^~~~
2023-09-08T19:35:56,866   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T19:35:56,867   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,867    2366 |   if (&(sboid) == NULL)
2023-09-08T19:35:56,868         |   ^~
2023-09-08T19:35:56,874   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T19:35:56,875   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,876    1346 |   if (&(annotation) == NULL)
2023-09-08T19:35:56,876         |   ^~
2023-09-08T19:35:56,896   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T19:35:56,896   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,897    1161 |   if (&(metaid) == NULL)
2023-09-08T19:35:56,898         |   ^~
2023-09-08T19:35:56,947   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T19:35:56,948   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,949     492 |   if (&rhs == NULL)
2023-09-08T19:35:56,949         |   ^~
2023-09-08T19:35:56,953   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T19:35:56,954   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,955     380 |   if (&orig == NULL)
2023-09-08T19:35:56,955         |   ^~
2023-09-08T19:35:56,965   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T19:35:56,966   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,967    1716 |   if (&(notes) == NULL)
2023-09-08T19:35:56,967         |   ^~
2023-09-08T19:35:56,971   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T19:35:56,972   ./base/sbml/SBase.cpp:5922:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:35:56,973    5922 |   if (&node == NULL) return;
2023-09-08T19:35:56,974         |   ^~
2023-09-08T19:36:14,205   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:14,206                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:14,206                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:14,207                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2023-09-08T19:36:14,207   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:14,208      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:14,208         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:14,209   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:14,209                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:14,210                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:14,211                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:14,211                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2023-09-08T19:36:14,212   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:14,212     117 |     struct unary_function
2023-09-08T19:36:14,213         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:14,524   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T19:36:14,525   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:14,526      97 |   if (&orig == NULL)
2023-09-08T19:36:14,526         |             ^
2023-09-08T19:36:14,527   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2023-09-08T19:36:14,528      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2023-09-08T19:36:14,528         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:14,529   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T19:36:14,529   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:14,530     115 |   if (&rhs == NULL)
2023-09-08T19:36:14,531         |            ^
2023-09-08T19:36:14,532   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2023-09-08T19:36:14,532     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2023-09-08T19:36:14,533         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:14,534   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T19:36:14,534   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:14,535     215 |   if (&(sid) == NULL)
2023-09-08T19:36:14,536         |              ^
2023-09-08T19:36:14,536   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2023-09-08T19:36:14,537     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2023-09-08T19:36:14,538         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:14,539   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T19:36:14,539   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:14,540     237 |   if (&(sid) == NULL)
2023-09-08T19:36:14,541         |              ^
2023-09-08T19:36:14,541   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2023-09-08T19:36:14,542     235 | SimpleSpeciesReference::setId (const std::string& sid)
2023-09-08T19:36:14,542         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:14,543   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T19:36:14,544   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:14,544     301 |   if (&(name) == NULL)
2023-09-08T19:36:14,545         |               ^
2023-09-08T19:36:14,546   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2023-09-08T19:36:14,546     299 | SimpleSpeciesReference::setName (const std::string& name)
2023-09-08T19:36:14,547         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:15,061   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T19:36:15,062   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:15,063      97 |   if (&orig == NULL)
2023-09-08T19:36:15,063         |   ^~
2023-09-08T19:36:15,064   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T19:36:15,064   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:15,065     115 |   if (&rhs == NULL)
2023-09-08T19:36:15,066         |   ^~
2023-09-08T19:36:15,066   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T19:36:15,067   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:15,068     215 |   if (&(sid) == NULL)
2023-09-08T19:36:15,068         |   ^~
2023-09-08T19:36:15,069   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T19:36:15,070   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:15,071     237 |   if (&(sid) == NULL)
2023-09-08T19:36:15,071         |   ^~
2023-09-08T19:36:15,072   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T19:36:15,073   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:15,074     301 |   if (&(name) == NULL)
2023-09-08T19:36:15,074         |   ^~
2023-09-08T19:36:19,737   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:19,738                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:19,738                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:19,739                    from ./base/sbml/Species.cpp:42:
2023-09-08T19:36:19,740   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:19,740      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:19,741         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:19,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:19,743                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:19,743                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:19,744                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:19,745                    from ./base/sbml/Species.cpp:35:
2023-09-08T19:36:19,746   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:19,747     117 |     struct unary_function
2023-09-08T19:36:19,747         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:20,045   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T19:36:20,045   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:20,046     167 |   if (&orig == NULL)
2023-09-08T19:36:20,047         |             ^
2023-09-08T19:36:20,047   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2023-09-08T19:36:20,048     164 | Species::Species(const Species& orig) :
2023-09-08T19:36:20,048         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:20,049   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T19:36:20,050   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:20,051     204 |   if (&rhs == NULL)
2023-09-08T19:36:20,052         |            ^
2023-09-08T19:36:20,053   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2023-09-08T19:36:20,053     202 | Species& Species::operator=(const Species& rhs)
2023-09-08T19:36:20,054         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,058   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T19:36:20,059   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,059     616 |   if (&(sid) == NULL)
2023-09-08T19:36:20,060         |              ^
2023-09-08T19:36:20,061   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2023-09-08T19:36:20,061     605 | Species::setId (const std::string& sid)
2023-09-08T19:36:20,062         |                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,063   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T19:36:20,064   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:20,064     641 |   if (&(name) == NULL)
2023-09-08T19:36:20,065         |               ^
2023-09-08T19:36:20,066   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2023-09-08T19:36:20,066     636 | Species::setName (const std::string& name)
2023-09-08T19:36:20,067         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:20,068   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T19:36:20,069   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,069     671 |   if (&(sid) == NULL)
2023-09-08T19:36:20,070         |              ^
2023-09-08T19:36:20,071   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2023-09-08T19:36:20,071     669 | Species::setSpeciesType (const std::string& sid)
2023-09-08T19:36:20,072         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,073   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T19:36:20,073   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,074     698 |   if (&(sid) == NULL)
2023-09-08T19:36:20,075         |              ^
2023-09-08T19:36:20,075   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2023-09-08T19:36:20,076     696 | Species::setCompartment (const std::string& sid)
2023-09-08T19:36:20,077         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,078   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T19:36:20,078   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,079     757 |   if (&(sid) == NULL)
2023-09-08T19:36:20,080         |              ^
2023-09-08T19:36:20,080   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2023-09-08T19:36:20,081     755 | Species::setSubstanceUnits (const std::string& sid)
2023-09-08T19:36:20,081         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,082   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T19:36:20,083   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,083     779 |   if (&(sid) == NULL)
2023-09-08T19:36:20,084         |              ^
2023-09-08T19:36:20,084   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2023-09-08T19:36:20,085     777 | Species::setSpatialSizeUnits (const std::string& sid)
2023-09-08T19:36:20,086         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,086   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T19:36:20,087   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,088     890 |   if (&(sid) == NULL)
2023-09-08T19:36:20,088         |              ^
2023-09-08T19:36:20,089   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2023-09-08T19:36:20,090     888 | Species::setConversionFactor (const std::string& sid)
2023-09-08T19:36:20,091         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,141   ./base/sbml/Species.cpp: At global scope:
2023-09-08T19:36:20,142   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:20,143    1913 | struct IdEqS : public unary_function<SBase*, bool>
2023-09-08T19:36:20,144         |                       ^~~~~~~~~~~~~~
2023-09-08T19:36:20,145   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:20,145     117 |     struct unary_function
2023-09-08T19:36:20,146         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:20,147   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T19:36:20,148   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,148    1936 |   if (&(sid) == NULL)
2023-09-08T19:36:20,149         |              ^
2023-09-08T19:36:20,150   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2023-09-08T19:36:20,150    1932 | ListOfSpecies::get (const std::string& sid) const
2023-09-08T19:36:20,151         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,152   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T19:36:20,153   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:20,153    1963 |   if (&(sid) != NULL)
2023-09-08T19:36:20,154         |              ^
2023-09-08T19:36:20,155   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2023-09-08T19:36:20,156    1958 | ListOfSpecies::remove (const std::string& sid)
2023-09-08T19:36:20,156         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:20,160   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2023-09-08T19:36:20,161   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:20,161    2041 |   catch (SBMLConstructorException)
2023-09-08T19:36:20,162         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:20,163   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:20,164   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:20,164    2057 |   catch (SBMLConstructorException)
2023-09-08T19:36:20,165         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:20,787   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T19:36:20,788   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,789    1936 |   if (&(sid) == NULL)
2023-09-08T19:36:20,789         |   ^~
2023-09-08T19:36:20,791   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T19:36:20,792   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,793     167 |   if (&orig == NULL)
2023-09-08T19:36:20,793         |   ^~
2023-09-08T19:36:20,794   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T19:36:20,794   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,795     204 |   if (&rhs == NULL)
2023-09-08T19:36:20,795         |   ^~
2023-09-08T19:36:20,797   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T19:36:20,797   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,798     616 |   if (&(sid) == NULL)
2023-09-08T19:36:20,798         |   ^~
2023-09-08T19:36:20,799   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T19:36:20,800   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,800     641 |   if (&(name) == NULL)
2023-09-08T19:36:20,801         |   ^~
2023-09-08T19:36:20,802   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T19:36:20,803   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,803     671 |   if (&(sid) == NULL)
2023-09-08T19:36:20,804         |   ^~
2023-09-08T19:36:20,805   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T19:36:20,806   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,806     698 |   if (&(sid) == NULL)
2023-09-08T19:36:20,807         |   ^~
2023-09-08T19:36:20,808   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T19:36:20,808   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,809     757 |   if (&(sid) == NULL)
2023-09-08T19:36:20,810         |   ^~
2023-09-08T19:36:20,810   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T19:36:20,811   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,812     779 |   if (&(sid) == NULL)
2023-09-08T19:36:20,812         |   ^~
2023-09-08T19:36:20,813   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T19:36:20,814   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,815     890 |   if (&(sid) == NULL)
2023-09-08T19:36:20,815         |   ^~
2023-09-08T19:36:20,816   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T19:36:20,817   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:20,817    1963 |   if (&(sid) != NULL)
2023-09-08T19:36:20,818         |   ^~
2023-09-08T19:36:30,882   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:30,882                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:30,883                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:30,883                    from ./base/sbml/SpeciesReference.cpp:48:
2023-09-08T19:36:30,884   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:30,884      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:30,885         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:30,886   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:30,886                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:30,887                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:30,887                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:30,888                    from ./base/sbml/SpeciesReference.cpp:35:
2023-09-08T19:36:30,889   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:30,889     117 |     struct unary_function
2023-09-08T19:36:30,890         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:31,197   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T19:36:31,198   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:31,199     129 |   if (&orig == NULL)
2023-09-08T19:36:31,199         |             ^
2023-09-08T19:36:31,200   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2023-09-08T19:36:31,201     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2023-09-08T19:36:31,201         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:31,202   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T19:36:31,203   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:31,203     157 |   if (&rhs == NULL)
2023-09-08T19:36:31,204         |            ^
2023-09-08T19:36:31,205   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2023-09-08T19:36:31,206     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2023-09-08T19:36:31,206         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:31,246   ./base/sbml/SpeciesReference.cpp: At global scope:
2023-09-08T19:36:31,247   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:31,247    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2023-09-08T19:36:31,248         |                         ^~~~~~~~~~~~~~
2023-09-08T19:36:31,249   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:31,250     117 |     struct unary_function
2023-09-08T19:36:31,250         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:31,253   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T19:36:31,254   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:31,255    1251 |   if (&(sid) == NULL)
2023-09-08T19:36:31,256         |              ^
2023-09-08T19:36:31,256   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2023-09-08T19:36:31,257    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2023-09-08T19:36:31,258         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:31,259   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T19:36:31,260   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:31,260    1279 |   if (&(sid) != NULL)
2023-09-08T19:36:31,261         |              ^
2023-09-08T19:36:31,262   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2023-09-08T19:36:31,262    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2023-09-08T19:36:31,263         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:31,275   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T19:36:31,276   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:31,277    1448 |   catch (SBMLConstructorException)
2023-09-08T19:36:31,277         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:31,278   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:31,279   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:31,279    1464 |   catch (SBMLConstructorException)
2023-09-08T19:36:31,280         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:31,281   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2023-09-08T19:36:31,281   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:31,282    1480 |   catch (SBMLConstructorException)
2023-09-08T19:36:31,283         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:31,284   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:31,284   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:31,285    1496 |   catch (SBMLConstructorException)
2023-09-08T19:36:31,286         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:31,878   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T19:36:31,879   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:31,880    1251 |   if (&(sid) == NULL)
2023-09-08T19:36:31,880         |   ^~
2023-09-08T19:36:31,883   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T19:36:31,884   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:31,884     129 |   if (&orig == NULL)
2023-09-08T19:36:31,885         |   ^~
2023-09-08T19:36:31,886   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T19:36:31,887   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:31,887     157 |   if (&rhs == NULL)
2023-09-08T19:36:31,888         |   ^~
2023-09-08T19:36:31,896   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T19:36:31,896   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:31,897    1279 |   if (&(sid) != NULL)
2023-09-08T19:36:31,897         |   ^~
2023-09-08T19:36:37,910   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:37,911                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:37,912                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:37,912                    from ./base/sbml/SpeciesType.cpp:41:
2023-09-08T19:36:37,913   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:37,913      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:37,914         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:37,914   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:37,915                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:37,916                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:37,916                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:37,917                    from ./base/sbml/SpeciesType.cpp:33:
2023-09-08T19:36:37,917   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:37,918     117 |     struct unary_function
2023-09-08T19:36:37,918         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:38,211   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T19:36:38,212   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:38,212      92 |   if (&orig == NULL)
2023-09-08T19:36:38,213         |             ^
2023-09-08T19:36:38,214   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2023-09-08T19:36:38,214      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2023-09-08T19:36:38,215         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:38,216   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T19:36:38,216   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:38,217     109 |   if (&rhs == NULL)
2023-09-08T19:36:38,218         |            ^
2023-09-08T19:36:38,218   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2023-09-08T19:36:38,219     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2023-09-08T19:36:38,220         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:38,220   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T19:36:38,221   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:38,222     206 |   if (&(sid) == NULL)
2023-09-08T19:36:38,223         |              ^
2023-09-08T19:36:38,223   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2023-09-08T19:36:38,224     195 | SpeciesType::setId (const std::string& sid)
2023-09-08T19:36:38,224         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:38,225   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T19:36:38,226   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:36:38,227     231 |   if (&(name) == NULL)
2023-09-08T19:36:38,227         |               ^
2023-09-08T19:36:38,228   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2023-09-08T19:36:38,229     226 | SpeciesType::setName (const std::string& name)
2023-09-08T19:36:38,229         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:38,234   ./base/sbml/SpeciesType.cpp: At global scope:
2023-09-08T19:36:38,235   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:38,236     541 | struct IdEqST : public unary_function<SBase*, bool>
2023-09-08T19:36:38,236         |                        ^~~~~~~~~~~~~~
2023-09-08T19:36:38,237   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:38,237     117 |     struct unary_function
2023-09-08T19:36:38,238         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:38,240   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T19:36:38,240   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:38,241     566 |   if (&(sid) == NULL)
2023-09-08T19:36:38,242         |              ^
2023-09-08T19:36:38,242   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2023-09-08T19:36:38,243     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2023-09-08T19:36:38,243         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:38,245   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T19:36:38,245   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:36:38,246     594 |   if (&(sid) != NULL)
2023-09-08T19:36:38,246         |              ^
2023-09-08T19:36:38,247   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2023-09-08T19:36:38,248     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2023-09-08T19:36:38,248         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:38,253   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2023-09-08T19:36:38,253   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:38,254     673 |   catch (SBMLConstructorException)
2023-09-08T19:36:38,255         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:38,256   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:38,256   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:38,257     689 |   catch (SBMLConstructorException)
2023-09-08T19:36:38,258         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:38,820   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T19:36:38,821   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,821     566 |   if (&(sid) == NULL)
2023-09-08T19:36:38,822         |   ^~
2023-09-08T19:36:38,824   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T19:36:38,824   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,825      92 |   if (&orig == NULL)
2023-09-08T19:36:38,825         |   ^~
2023-09-08T19:36:38,826   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T19:36:38,827   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,828     109 |   if (&rhs == NULL)
2023-09-08T19:36:38,828         |   ^~
2023-09-08T19:36:38,829   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T19:36:38,829   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,830     206 |   if (&(sid) == NULL)
2023-09-08T19:36:38,830         |   ^~
2023-09-08T19:36:38,831   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T19:36:38,831   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,832     231 |   if (&(name) == NULL)
2023-09-08T19:36:38,832         |   ^~
2023-09-08T19:36:38,834   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T19:36:38,835   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:38,835     594 |   if (&(sid) != NULL)
2023-09-08T19:36:38,836         |   ^~
2023-09-08T19:36:43,920   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:43,921                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:43,921                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:43,922                    from ./base/sbml/StoichiometryMath.cpp:46:
2023-09-08T19:36:43,922   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:43,923      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:43,924         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:43,924   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:43,925                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:43,926                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:43,926                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:43,927                    from ./base/sbml/StoichiometryMath.cpp:33:
2023-09-08T19:36:43,927   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:43,928     117 |     struct unary_function
2023-09-08T19:36:43,929         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:44,218   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T19:36:44,218   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:44,219      98 |   if (&orig == NULL)
2023-09-08T19:36:44,220         |             ^
2023-09-08T19:36:44,220   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2023-09-08T19:36:44,221      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2023-09-08T19:36:44,222         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:44,222   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T19:36:44,223   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:44,224     120 |   if (&rhs == NULL)
2023-09-08T19:36:44,225         |            ^
2023-09-08T19:36:44,225   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2023-09-08T19:36:44,226     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2023-09-08T19:36:44,227         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:44,244   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2023-09-08T19:36:44,245   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:44,246     627 |   catch (SBMLConstructorException)
2023-09-08T19:36:44,247         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:44,248   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:44,248   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:44,249     643 |   catch (SBMLConstructorException)
2023-09-08T19:36:44,250         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:44,751   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T19:36:44,752   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:44,753      98 |   if (&orig == NULL)
2023-09-08T19:36:44,753         |   ^~
2023-09-08T19:36:44,754   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T19:36:44,754   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:44,755     120 |   if (&rhs == NULL)
2023-09-08T19:36:44,756         |   ^~
2023-09-08T19:36:53,042   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:53,043                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:53,044                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:53,044                    from ./base/sbml/Trigger.cpp:46:
2023-09-08T19:36:53,045   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:53,046      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:53,046         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:53,047   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:53,047                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:53,048                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:53,049                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:53,049                    from ./base/sbml/Trigger.cpp:33:
2023-09-08T19:36:53,050   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:53,051     117 |     struct unary_function
2023-09-08T19:36:53,051         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:53,334   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T19:36:53,335   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:53,336     106 |   if (&orig == NULL)
2023-09-08T19:36:53,336         |             ^
2023-09-08T19:36:53,337   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2023-09-08T19:36:53,338     102 | Trigger::Trigger (const Trigger& orig) :
2023-09-08T19:36:53,339         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:36:53,339   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T19:36:53,340   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:53,341     131 |   if (&rhs == NULL)
2023-09-08T19:36:53,342         |            ^
2023-09-08T19:36:53,342   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2023-09-08T19:36:53,343     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2023-09-08T19:36:53,344         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T19:36:53,362   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2023-09-08T19:36:53,363   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:53,363     670 |   catch (SBMLConstructorException)
2023-09-08T19:36:53,364         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:53,365   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:53,365   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:53,366     686 |   catch (SBMLConstructorException)
2023-09-08T19:36:53,366         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:53,870   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T19:36:53,871   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:53,871     106 |   if (&orig == NULL)
2023-09-08T19:36:53,872         |   ^~
2023-09-08T19:36:53,872   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T19:36:53,873   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:53,874     131 |   if (&rhs == NULL)
2023-09-08T19:36:53,874         |   ^~
2023-09-08T19:36:58,261   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:36:58,261                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:36:58,262                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:36:58,263                    from ./base/sbml/Unit.cpp:41:
2023-09-08T19:36:58,263   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:36:58,264      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:36:58,265         |                           ^~~~~~~~~~~~~~
2023-09-08T19:36:58,265   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:36:58,266                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:36:58,267                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:36:58,267                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:36:58,268                    from ./base/sbml/Unit.cpp:33:
2023-09-08T19:36:58,268   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:36:58,269     117 |     struct unary_function
2023-09-08T19:36:58,270         |            ^~~~~~~~~~~~~~
2023-09-08T19:36:58,559   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T19:36:58,560   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:36:58,560     150 |   if (&orig == NULL)
2023-09-08T19:36:58,561         |             ^
2023-09-08T19:36:58,562   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2023-09-08T19:36:58,562     147 | Unit::Unit(const Unit& orig) :
2023-09-08T19:36:58,563         |            ~~~~~~~~~~~~^~~~
2023-09-08T19:36:58,564   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T19:36:58,564   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:36:58,565     179 |   if (&rhs == NULL)
2023-09-08T19:36:58,566         |            ^
2023-09-08T19:36:58,567   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2023-09-08T19:36:58,567     177 | Unit& Unit::operator=(const Unit& rhs)
2023-09-08T19:36:58,568         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:36:58,664   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2023-09-08T19:36:58,665   ./base/sbml/Unit.cpp:2197:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:58,666    2197 |   catch (SBMLConstructorException)
2023-09-08T19:36:58,666         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:58,667   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:36:58,668   ./base/sbml/Unit.cpp:2213:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:36:58,668    2213 |   catch (SBMLConstructorException)
2023-09-08T19:36:58,669         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:36:59,270   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T19:36:59,270   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:59,271     150 |   if (&orig == NULL)
2023-09-08T19:36:59,272         |   ^~
2023-09-08T19:36:59,272   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T19:36:59,273   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:36:59,274     179 |   if (&rhs == NULL)
2023-09-08T19:36:59,274         |   ^~
2023-09-08T19:37:06,517   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:37:06,518                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:37:06,519                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:37:06,519                    from ./base/sbml/UnitDefinition.cpp:44:
2023-09-08T19:37:06,520   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:06,520      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:37:06,521         |                           ^~~~~~~~~~~~~~
2023-09-08T19:37:06,522   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:37:06,522                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:37:06,523                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:37:06,524                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T19:37:06,524                    from ./base/sbml/UnitDefinition.cpp:34:
2023-09-08T19:37:06,525   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:06,526     117 |     struct unary_function
2023-09-08T19:37:06,527         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:06,820   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T19:37:06,820   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:06,821     104 |   if (&orig == NULL)
2023-09-08T19:37:06,822         |             ^
2023-09-08T19:37:06,822   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2023-09-08T19:37:06,823     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2023-09-08T19:37:06,824         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:06,824   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T19:37:06,825   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:06,826     123 |   if (&rhs == NULL)
2023-09-08T19:37:06,826         |            ^
2023-09-08T19:37:06,827   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2023-09-08T19:37:06,828     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2023-09-08T19:37:06,828         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:06,832   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T19:37:06,833   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:06,833     262 |   if (&(sid) == NULL)
2023-09-08T19:37:06,834         |              ^
2023-09-08T19:37:06,835   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2023-09-08T19:37:06,835     251 | UnitDefinition::setId (const std::string& sid)
2023-09-08T19:37:06,836         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:06,836   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T19:37:06,837   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:06,838     287 |   if (&(name) == NULL)
2023-09-08T19:37:06,838         |               ^
2023-09-08T19:37:06,839   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2023-09-08T19:37:06,839     282 | UnitDefinition::setName (const std::string& name)
2023-09-08T19:37:06,840         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:06,899   ./base/sbml/UnitDefinition.cpp: At global scope:
2023-09-08T19:37:06,900   ./base/sbml/UnitDefinition.cpp:1666:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:06,901    1666 | struct IdEqUD : public unary_function<SBase*, bool>
2023-09-08T19:37:06,901         |                        ^~~~~~~~~~~~~~
2023-09-08T19:37:06,902   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:06,902     117 |     struct unary_function
2023-09-08T19:37:06,903         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:06,905   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T19:37:06,906   ./base/sbml/UnitDefinition.cpp:1691:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:06,907    1691 |   if (&(sid) == NULL)
2023-09-08T19:37:06,908         |              ^
2023-09-08T19:37:06,909   ./base/sbml/UnitDefinition.cpp:1687:48: note: ‘sid’ declared here
2023-09-08T19:37:06,910    1687 | ListOfUnitDefinitions::get (const std::string& sid) const
2023-09-08T19:37:06,910         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:06,912   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T19:37:06,913   ./base/sbml/UnitDefinition.cpp:1733:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:37:06,914    1733 |   if (&(sid) != NULL)
2023-09-08T19:37:06,915         |              ^
2023-09-08T19:37:06,916   ./base/sbml/UnitDefinition.cpp:1728:51: note: ‘sid’ declared here
2023-09-08T19:37:06,916    1728 | ListOfUnitDefinitions::remove (const std::string& sid)
2023-09-08T19:37:06,917         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:06,922   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2023-09-08T19:37:06,923   ./base/sbml/UnitDefinition.cpp:1811:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:37:06,923    1811 |   catch (SBMLConstructorException)
2023-09-08T19:37:06,924         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:06,925   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T19:37:06,926   ./base/sbml/UnitDefinition.cpp:1827:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T19:37:06,926    1827 |   catch (SBMLConstructorException)
2023-09-08T19:37:06,928         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:07,530   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T19:37:07,531   ./base/sbml/UnitDefinition.cpp:1691:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,531    1691 |   if (&(sid) == NULL)
2023-09-08T19:37:07,532         |   ^~
2023-09-08T19:37:07,533   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T19:37:07,534   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,534     123 |   if (&rhs == NULL)
2023-09-08T19:37:07,535         |   ^~
2023-09-08T19:37:07,536   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T19:37:07,537   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,538     262 |   if (&(sid) == NULL)
2023-09-08T19:37:07,538         |   ^~
2023-09-08T19:37:07,539   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T19:37:07,539   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,540     287 |   if (&(name) == NULL)
2023-09-08T19:37:07,541         |   ^~
2023-09-08T19:37:07,546   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T19:37:07,547   ./base/sbml/UnitDefinition.cpp:1733:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,547    1733 |   if (&(sid) != NULL)
2023-09-08T19:37:07,548         |   ^~
2023-09-08T19:37:07,552   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T19:37:07,552   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:07,553     104 |   if (&orig == NULL)
2023-09-08T19:37:07,554         |   ^~
2023-09-08T19:37:13,989   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T19:37:13,989   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:13,990     130 |   if (&orig == NULL)
2023-09-08T19:37:13,991         |             ^
2023-09-08T19:37:13,991   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2023-09-08T19:37:13,992     128 | CVTerm::CVTerm(const CVTerm& orig)
2023-09-08T19:37:13,993         |                ~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:13,994   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T19:37:13,995   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:13,995     150 |   if (&rhs == NULL)
2023-09-08T19:37:13,996         |            ^
2023-09-08T19:37:13,997   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2023-09-08T19:37:13,997     148 | CVTerm::operator=(const CVTerm& rhs)
2023-09-08T19:37:13,998         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T19:37:14,002   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T19:37:14,003   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T19:37:14,003     256 |   if (&qualifier == NULL)
2023-09-08T19:37:14,004         |                  ^
2023-09-08T19:37:14,005   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2023-09-08T19:37:14,006     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2023-09-08T19:37:14,006         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:37:14,007   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T19:37:14,007   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T19:37:14,008     273 |   if (&qualifier == NULL)
2023-09-08T19:37:14,008         |                  ^
2023-09-08T19:37:14,009   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2023-09-08T19:37:14,009     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2023-09-08T19:37:14,010         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:37:14,011   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T19:37:14,012   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2023-09-08T19:37:14,012     355 |   if (&resource == NULL || resource.empty())
2023-09-08T19:37:14,013         |                 ^
2023-09-08T19:37:14,014   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2023-09-08T19:37:14,014     353 | CVTerm::addResource(const std::string& resource)
2023-09-08T19:37:14,015         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:37:14,445   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T19:37:14,446   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:14,446     256 |   if (&qualifier == NULL)
2023-09-08T19:37:14,447         |   ^~
2023-09-08T19:37:14,448   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T19:37:14,448   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:14,449     273 |   if (&qualifier == NULL)
2023-09-08T19:37:14,450         |   ^~
2023-09-08T19:37:14,453   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T19:37:14,453   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:14,454     130 |   if (&orig == NULL)
2023-09-08T19:37:14,455         |   ^~
2023-09-08T19:37:14,455   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T19:37:14,456   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:14,457     150 |   if (&rhs == NULL)
2023-09-08T19:37:14,457         |   ^~
2023-09-08T19:37:14,458   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T19:37:14,458   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:14,459     355 |   if (&resource == NULL || resource.empty())
2023-09-08T19:37:14,460         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,204   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T19:37:17,205   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T19:37:17,206      75 |   if (&(date) == NULL)
2023-09-08T19:37:17,207         |               ^
2023-09-08T19:37:17,208   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2023-09-08T19:37:17,209      72 | Date::Date (const std::string& date) :
2023-09-08T19:37:17,209         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,210   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T19:37:17,210   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:17,211      91 |   if (&orig == NULL)
2023-09-08T19:37:17,211         |             ^
2023-09-08T19:37:17,212   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2023-09-08T19:37:17,213      89 | Date::Date(const Date& orig)
2023-09-08T19:37:17,213         |            ~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,214   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T19:37:17,214   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:17,215     119 |   if (&rhs == NULL)
2023-09-08T19:37:17,215         |            ^
2023-09-08T19:37:17,216   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2023-09-08T19:37:17,217     117 | Date& Date::operator=(const Date& rhs)
2023-09-08T19:37:17,217         |                       ~~~~~~~~~~~~^~~
2023-09-08T19:37:17,218   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T19:37:17,218   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T19:37:17,219     389 |   if (&(date) == NULL)
2023-09-08T19:37:17,220         |               ^
2023-09-08T19:37:17,220   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2023-09-08T19:37:17,221     383 | Date::setDateAsString (const std::string& date)
2023-09-08T19:37:17,222         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:17,651   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T19:37:17,652   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:17,653      91 |   if (&orig == NULL)
2023-09-08T19:37:17,653         |   ^~
2023-09-08T19:37:17,654   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T19:37:17,655   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:17,656     119 |   if (&rhs == NULL)
2023-09-08T19:37:17,656         |   ^~
2023-09-08T19:37:17,657   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T19:37:17,658   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:17,658      75 |   if (&(date) == NULL)
2023-09-08T19:37:17,659         |   ^~
2023-09-08T19:37:17,660   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T19:37:17,660   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:17,661     389 |   if (&(date) == NULL)
2023-09-08T19:37:17,662         |   ^~
2023-09-08T19:37:17,864   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2023-09-08T19:37:17,865   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:17,866     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:17,866         |                        ^~
2023-09-08T19:37:17,867   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2023-09-08T19:37:17,867     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:17,868         |                    ^~~~~~~~
2023-09-08T19:37:17,869   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2023-09-08T19:37:17,869     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T19:37:17,870         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,870   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:17,871     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T19:37:17,871         |                       ^
2023-09-08T19:37:17,872   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:17,873     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T19:37:17,873         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,873   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:17,874     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T19:37:17,874         |                       ^
2023-09-08T19:37:17,875   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:17,875     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T19:37:17,876         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,876   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:17,877     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T19:37:17,877         |                       ^
2023-09-08T19:37:17,878   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:17,879     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T19:37:17,879         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,880   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T19:37:17,881     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T19:37:17,881         |                       ^
2023-09-08T19:37:17,882   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T19:37:17,882     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T19:37:17,883         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,884   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T19:37:17,884     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T19:37:17,885         |                         ^
2023-09-08T19:37:17,885   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T19:37:17,886     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T19:37:17,887         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:17,887   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T19:37:17,888     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T19:37:17,888         |                         ^
2023-09-08T19:37:17,889   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T19:37:17,890     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T19:37:17,890         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:37:20,485   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T19:37:20,485   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:20,486     132 |   if (&orig == NULL)
2023-09-08T19:37:20,487         |             ^
2023-09-08T19:37:20,488   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2023-09-08T19:37:20,488     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2023-09-08T19:37:20,489         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:20,489   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T19:37:20,490   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:20,491     159 |   if (&rhs == NULL)
2023-09-08T19:37:20,491         |            ^
2023-09-08T19:37:20,492   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2023-09-08T19:37:20,492     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2023-09-08T19:37:20,493         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:20,494   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T19:37:20,494   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:20,495     233 |   if (&(name) == NULL)
2023-09-08T19:37:20,496         |               ^
2023-09-08T19:37:20,496   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2023-09-08T19:37:20,497     231 | ModelCreator::setFamilyName(const std::string& name)
2023-09-08T19:37:20,497         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:20,498   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T19:37:20,499   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:37:20,500     252 |   if (&(name) == NULL)
2023-09-08T19:37:20,501         |               ^
2023-09-08T19:37:20,501   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2023-09-08T19:37:20,502     250 | ModelCreator::setGivenName(const std::string& name)
2023-09-08T19:37:20,503         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:20,504   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T19:37:20,504   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2023-09-08T19:37:20,505     271 |   if (&(email) == NULL)
2023-09-08T19:37:20,506         |                ^
2023-09-08T19:37:20,506   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2023-09-08T19:37:20,507     269 | ModelCreator::setEmail(const std::string& email)
2023-09-08T19:37:20,508         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:37:20,509   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T19:37:20,509   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2023-09-08T19:37:20,510     287 |   if (&(organization) == NULL)
2023-09-08T19:37:20,511         |                       ^
2023-09-08T19:37:20,511   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2023-09-08T19:37:20,512     285 | ModelCreator::setOrganization(const std::string& organization)
2023-09-08T19:37:20,513         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T19:37:20,913   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T19:37:20,914   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,914     233 |   if (&(name) == NULL)
2023-09-08T19:37:20,915         |   ^~
2023-09-08T19:37:20,915   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T19:37:20,916   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,916     252 |   if (&(name) == NULL)
2023-09-08T19:37:20,917         |   ^~
2023-09-08T19:37:20,917   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T19:37:20,918   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,918     271 |   if (&(email) == NULL)
2023-09-08T19:37:20,919         |   ^~
2023-09-08T19:37:20,919   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T19:37:20,920   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,920     287 |   if (&(organization) == NULL)
2023-09-08T19:37:20,921         |   ^~
2023-09-08T19:37:20,921   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T19:37:20,922   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,923     132 |   if (&orig == NULL)
2023-09-08T19:37:20,923         |   ^~
2023-09-08T19:37:20,924   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T19:37:20,925   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:20,925     159 |   if (&rhs == NULL)
2023-09-08T19:37:20,926         |   ^~
2023-09-08T19:37:23,795   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T19:37:23,796   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:23,797      87 |   if (&orig == NULL)
2023-09-08T19:37:23,797         |             ^
2023-09-08T19:37:23,798   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2023-09-08T19:37:23,799      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2023-09-08T19:37:23,800         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:23,800   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T19:37:23,801   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:23,802     123 |   if (&rhs == NULL)
2023-09-08T19:37:23,802         |            ^
2023-09-08T19:37:23,803   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2023-09-08T19:37:23,804     121 | ModelHistory::operator=(const ModelHistory& rhs)
2023-09-08T19:37:23,804         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:24,217   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T19:37:24,218   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:24,219      87 |   if (&orig == NULL)
2023-09-08T19:37:24,219         |   ^~
2023-09-08T19:37:24,220   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T19:37:24,221   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:24,222     123 |   if (&rhs == NULL)
2023-09-08T19:37:24,222         |   ^~
2023-09-08T19:37:27,622   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:37:27,623                    from ./base//sbml/Model.h:409,
2023-09-08T19:37:27,623                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2023-09-08T19:37:27,623   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:37:27,624      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:37:27,624         |                           ^~~~~~~~~~~~~~
2023-09-08T19:37:27,625   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:37:27,625                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:37:27,626                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:37:27,626                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2023-09-08T19:37:27,627   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:37:27,627     117 |     struct unary_function
2023-09-08T19:37:27,628         |            ^~~~~~~~~~~~~~
2023-09-08T19:37:27,959   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T19:37:27,959   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:37:27,960      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T19:37:27,960         |                ^
2023-09-08T19:37:27,961   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2023-09-08T19:37:27,962      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:37:27,963         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:37:28,564   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:28,565      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T19:37:28,566         |                ^
2023-09-08T19:37:51,015   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T19:37:51,016   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:51,016     110 |   if (&orig == NULL)
2023-09-08T19:37:51,017         |             ^
2023-09-08T19:37:51,018   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2023-09-08T19:37:51,018     108 |   (const ConversionOption& orig)
2023-09-08T19:37:51,019         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:51,020   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T19:37:51,020   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:51,021     128 |   if (&rhs == NULL)
2023-09-08T19:37:51,022         |            ^
2023-09-08T19:37:51,023   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2023-09-08T19:37:51,023     126 | ConversionOption::operator=(const ConversionOption& rhs)
2023-09-08T19:37:51,024         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:51,489   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T19:37:51,490   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:51,491     110 |   if (&orig == NULL)
2023-09-08T19:37:51,491         |   ^~
2023-09-08T19:37:51,492   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T19:37:51,492   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:51,493     128 |   if (&rhs == NULL)
2023-09-08T19:37:51,494         |   ^~
2023-09-08T19:37:56,204   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T19:37:56,205   ./base/sbml/conversion/ConversionProperties.cpp:58:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:37:56,205      58 |   if (&orig == NULL)
2023-09-08T19:37:56,206         |             ^
2023-09-08T19:37:56,207   ./base/sbml/conversion/ConversionProperties.cpp:55:72: note: ‘orig’ declared here
2023-09-08T19:37:56,207      55 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2023-09-08T19:37:56,208         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:37:56,268   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T19:37:56,269   ./base/sbml/conversion/ConversionProperties.cpp:81:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:37:56,269      81 |   if (&rhs == NULL)
2023-09-08T19:37:56,270         |            ^
2023-09-08T19:37:56,271   ./base/sbml/conversion/ConversionProperties.cpp:79:61: note: ‘rhs’ declared here
2023-09-08T19:37:56,272      79 | ConversionProperties::operator=(const ConversionProperties& rhs)
2023-09-08T19:37:56,272         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:37:56,282   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T19:37:56,283   ./base/sbml/conversion/ConversionProperties.cpp:212:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2023-09-08T19:37:56,284     212 |   if (&option == NULL) return;
2023-09-08T19:37:56,285         |               ^
2023-09-08T19:37:56,285   ./base/sbml/conversion/ConversionProperties.cpp:210:57: note: ‘option’ declared here
2023-09-08T19:37:56,286     210 | ConversionProperties::addOption(const ConversionOption &option)
2023-09-08T19:37:56,287         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:37:56,885   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T19:37:56,886   ./base/sbml/conversion/ConversionProperties.cpp:58:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:56,887      58 |   if (&orig == NULL)
2023-09-08T19:37:56,888         |   ^~
2023-09-08T19:37:56,888   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T19:37:56,889   ./base/sbml/conversion/ConversionProperties.cpp:81:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:56,890      81 |   if (&rhs == NULL)
2023-09-08T19:37:56,890         |   ^~
2023-09-08T19:37:56,891   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T19:37:56,892   ./base/sbml/conversion/ConversionProperties.cpp:212:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:37:56,893     212 |   if (&option == NULL) return;
2023-09-08T19:37:56,894         |   ^~
2023-09-08T19:38:03,501   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:03,501                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:03,502                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:03,502                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:03,503                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:03,504                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:69,
2023-09-08T19:38:03,504                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2023-09-08T19:38:03,505   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:03,505      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:03,506         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:03,507   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:03,507                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:03,508                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:03,509                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:68:
2023-09-08T19:38:03,509   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:03,510     117 |     struct unary_function
2023-09-08T19:38:03,511         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:07,482   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:07,483                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:07,484                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:07,484                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:07,485                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:07,486                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2023-09-08T19:38:07,486   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:07,487      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:07,488         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:07,489   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:07,489                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:07,490                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:07,491                    from ./base//sbml/conversion/SBMLConverter.h:67:
2023-09-08T19:38:07,491   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:07,492     117 |     struct unary_function
2023-09-08T19:38:07,493         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:07,773   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T19:38:07,774   ./base/sbml/conversion/SBMLConverter.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:38:07,775      59 |   if (&orig == NULL)
2023-09-08T19:38:07,775         |             ^
2023-09-08T19:38:07,776   ./base/sbml/conversion/SBMLConverter.cpp:55:55: note: ‘orig’ declared here
2023-09-08T19:38:07,777      55 |     SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2023-09-08T19:38:07,778         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:38:07,779   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T19:38:07,779   ./base/sbml/conversion/SBMLConverter.cpp:94:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:07,780      94 |   if (&rhs == NULL)
2023-09-08T19:38:07,781         |            ^
2023-09-08T19:38:07,782   ./base/sbml/conversion/SBMLConverter.cpp:92:47: note: ‘rhs’ declared here
2023-09-08T19:38:07,782      92 | SBMLConverter::operator=(const SBMLConverter& rhs)
2023-09-08T19:38:07,783         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:08,259   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T19:38:08,259   ./base/sbml/conversion/SBMLConverter.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:08,260      59 |   if (&orig == NULL)
2023-09-08T19:38:08,261         |   ^~
2023-09-08T19:38:08,261   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T19:38:08,262   ./base/sbml/conversion/SBMLConverter.cpp:94:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:08,262      94 |   if (&rhs == NULL)
2023-09-08T19:38:08,263         |   ^~
2023-09-08T19:38:11,622   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:11,623                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:11,623                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:11,624                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:11,625                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:11,625                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2023-09-08T19:38:11,626                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2023-09-08T19:38:11,626   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:11,627      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:11,628         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:11,629   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T19:38:11,629                    from /usr/include/c++/12/vector:66,
2023-09-08T19:38:11,630                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2023-09-08T19:38:11,630   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:11,631     117 |     struct unary_function
2023-09-08T19:38:11,632         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:15,935   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:15,936                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:15,937                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:15,937                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:15,938                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:15,939                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:69,
2023-09-08T19:38:15,939                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2023-09-08T19:38:15,940   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:15,941      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:15,941         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:15,942   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:15,943                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:15,944                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:15,944                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:68:
2023-09-08T19:38:15,945   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:15,946     117 |     struct unary_function
2023-09-08T19:38:15,946         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:16,249   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:16,249   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:101:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:16,250     101 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T19:38:16,250         |              ^
2023-09-08T19:38:16,251   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:99:80: note: ‘props’ declared here
2023-09-08T19:38:16,251      99 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:16,252         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:16,258   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2023-09-08T19:38:16,259   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:205:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2023-09-08T19:38:16,259     205 |           ->isSetMath(), &idsToSkip)
2023-09-08T19:38:16,260         |                          ^~~~~~~~~~
2023-09-08T19:38:16,261   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:142:10: note: ‘idsToSkip’ declared here
2023-09-08T19:38:16,261     142 |   IdList idsToSkip;
2023-09-08T19:38:16,262         |          ^~~~~~~~~
2023-09-08T19:38:16,762   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:16,763   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:101:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:16,763     101 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T19:38:16,764         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:20,689   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:20,690                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:20,690                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:20,691                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:20,692                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:20,693                    from ./base//sbml/conversion/SBMLIdConverter.h:45,
2023-09-08T19:38:20,693                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2023-09-08T19:38:20,694   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:20,695      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:20,695         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:20,696   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:20,697                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:20,697                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:20,698                    from ./base//sbml/conversion/SBMLIdConverter.h:44:
2023-09-08T19:38:20,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:20,699     117 |     struct unary_function
2023-09-08T19:38:20,700         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:20,996   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:20,997   ./base/sbml/conversion/SBMLIdConverter.cpp:104:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:20,998     104 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T19:38:20,999         |              ^
2023-09-08T19:38:20,999   ./base/sbml/conversion/SBMLIdConverter.cpp:102:64: note: ‘props’ declared here
2023-09-08T19:38:21,000     102 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:21,000         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:21,669   ./base/sbml/conversion/SBMLIdConverter.cpp:104:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:21,670     104 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T19:38:21,670         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:26,288   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:26,289                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:26,290                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:26,290                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:26,291                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:26,291                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:51,
2023-09-08T19:38:26,292                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2023-09-08T19:38:26,292   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:26,293      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:26,294         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:26,295   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:26,296                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:26,296                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:26,297                    from ./base//sbml/conversion/SBMLConverter.h:67:
2023-09-08T19:38:26,298   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:26,299     117 |     struct unary_function
2023-09-08T19:38:26,299         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:26,594   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T19:38:26,595   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:26,596      91 |   if (&rhs == NULL)
2023-09-08T19:38:26,597         |            ^
2023-09-08T19:38:26,598   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2023-09-08T19:38:26,598      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2023-09-08T19:38:26,599         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:26,600   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:26,601   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:26,601     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T19:38:26,602         |              ^
2023-09-08T19:38:26,603   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:122:72: note: ‘props’ declared here
2023-09-08T19:38:26,604     122 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:26,605         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:27,104   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T19:38:27,104   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:27,105      91 |   if (&rhs == NULL)
2023-09-08T19:38:27,105         |   ^~
2023-09-08T19:38:27,106   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:27,106   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:124:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:27,107     124 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T19:38:27,108         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:30,960   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:30,960                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:30,961                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:30,961                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:30,961                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:30,962                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:87,
2023-09-08T19:38:30,962                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2023-09-08T19:38:30,963   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:30,964      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:30,964         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:30,965   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:30,966                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:30,967                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:30,967                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:86:
2023-09-08T19:38:30,968   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:30,969     117 |     struct unary_function
2023-09-08T19:38:30,969         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:31,270   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:31,270   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:31,271      98 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T19:38:31,272         |              ^
2023-09-08T19:38:31,273   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:96:79: note: ‘props’ declared here
2023-09-08T19:38:31,273      96 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:31,274         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:31,751   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:31,752      98 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T19:38:31,752         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:35,384   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:35,385                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:35,386                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:35,386                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:35,387                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:35,387                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:58,
2023-09-08T19:38:35,388                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2023-09-08T19:38:35,388   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:35,389      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:35,389         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:35,390   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:35,391                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:35,391                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:35,392                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:57:
2023-09-08T19:38:35,392   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:35,393     117 |     struct unary_function
2023-09-08T19:38:35,393         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:35,770   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T19:38:35,771   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:38:35,772      89 |   if (&rhs == NULL)
2023-09-08T19:38:35,772         |            ^
2023-09-08T19:38:35,773   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2023-09-08T19:38:35,774      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2023-09-08T19:38:35,774         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:38:35,775   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:35,776   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:35,777     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T19:38:35,777         |              ^
2023-09-08T19:38:35,778   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:123:74: note: ‘props’ declared here
2023-09-08T19:38:35,779     123 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:35,780         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:36,357   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T19:38:36,358   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:36,358      89 |   if (&rhs == NULL)
2023-09-08T19:38:36,359         |   ^~
2023-09-08T19:38:36,360   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:36,361   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:125:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:36,361     125 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T19:38:36,362         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:41,370   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:41,371                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:41,371                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:41,372                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:41,373                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:41,373                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:45,
2023-09-08T19:38:41,374                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2023-09-08T19:38:41,374   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:41,375      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:41,375         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:41,376   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:41,376                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:41,377                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:41,378                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:44:
2023-09-08T19:38:41,378   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:41,379     117 |     struct unary_function
2023-09-08T19:38:41,380         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:41,676   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:41,677   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:105:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:41,677     105 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T19:38:41,678         |              ^
2023-09-08T19:38:41,679   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:103:76: note: ‘props’ declared here
2023-09-08T19:38:41,679     103 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:41,680         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:42,209   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:105:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:42,210     105 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T19:38:42,211         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:46,288   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:46,289                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:46,289                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:46,290                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:46,291                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:46,291                    from ./base//sbml/conversion/SBMLReactionConverter.h:45,
2023-09-08T19:38:46,292                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2023-09-08T19:38:46,293   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:46,293      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:46,294         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:46,294   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:46,295                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:46,296                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:46,296                    from ./base//sbml/conversion/SBMLReactionConverter.h:44:
2023-09-08T19:38:46,297   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:46,298     117 |     struct unary_function
2023-09-08T19:38:46,298         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:46,613   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:46,613   ./base/sbml/conversion/SBMLReactionConverter.cpp:107:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:46,614     107 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T19:38:46,614         |              ^
2023-09-08T19:38:46,615   ./base/sbml/conversion/SBMLReactionConverter.cpp:105:70: note: ‘props’ declared here
2023-09-08T19:38:46,616     105 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:46,616         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:46,634   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual int SBMLReactionConverter::convert()’:
2023-09-08T19:38:46,634   ./base/sbml/conversion/SBMLReactionConverter.cpp:254:13: warning: variable ‘model’ set but not used [-Wunused-but-set-variable]
2023-09-08T19:38:46,635     254 |     Model * model = mDocument->getModel();
2023-09-08T19:38:46,636         |             ^~~~~
2023-09-08T19:38:47,224   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:47,225   ./base/sbml/conversion/SBMLReactionConverter.cpp:107:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:47,225     107 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T19:38:47,226         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:38:52,238   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:38:52,239                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:38:52,239                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:38:52,240                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:38:52,241                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:38:52,242                    from ./base//sbml/conversion/SBMLRuleConverter.h:96,
2023-09-08T19:38:52,243                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2023-09-08T19:38:52,243   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:38:52,244      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:38:52,245         |                           ^~~~~~~~~~~~~~
2023-09-08T19:38:52,245   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:38:52,246                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:38:52,247                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:38:52,247                    from ./base//sbml/conversion/SBMLRuleConverter.h:95:
2023-09-08T19:38:52,248   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:38:52,249     117 |     struct unary_function
2023-09-08T19:38:52,249         |            ^~~~~~~~~~~~~~
2023-09-08T19:38:52,543   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:38:52,544   ./base/sbml/conversion/SBMLRuleConverter.cpp:102:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:38:52,545     102 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T19:38:52,546         |              ^
2023-09-08T19:38:52,547   ./base/sbml/conversion/SBMLRuleConverter.cpp:100:68: note: ‘props’ declared here
2023-09-08T19:38:52,547     100 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:38:52,548         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:38:53,589   ./base/sbml/conversion/SBMLRuleConverter.cpp:102:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:38:53,590     102 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T19:38:53,591         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:39:01,524   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:01,525                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:01,525                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:01,526                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:39:01,526                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:39:01,527                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:54,
2023-09-08T19:39:01,527                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2023-09-08T19:39:01,528   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:01,528      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:01,529         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:01,529   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:01,530                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:01,531                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:01,532                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:53:
2023-09-08T19:39:01,532   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:01,533     117 |     struct unary_function
2023-09-08T19:39:01,534         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:01,849   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T19:39:01,849   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:01,850      86 |   if (&rhs == NULL)
2023-09-08T19:39:01,851         |            ^
2023-09-08T19:39:01,852   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2023-09-08T19:39:01,852      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2023-09-08T19:39:01,853         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:01,854   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:01,855   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:39:01,856     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T19:39:01,856         |              ^
2023-09-08T19:39:01,857   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:119:74: note: ‘props’ declared here
2023-09-08T19:39:01,858     119 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:39:01,858         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:39:02,341   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T19:39:02,342   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:02,343      86 |   if (&rhs == NULL)
2023-09-08T19:39:02,343         |   ^~
2023-09-08T19:39:02,344   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:02,344   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:02,345     121 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T19:39:02,346         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:39:05,851   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:05,851                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:05,852                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:05,852                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:39:05,853                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:39:05,854                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70,
2023-09-08T19:39:05,854                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2023-09-08T19:39:05,855   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:05,855      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:05,856         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:05,857   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:05,857                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:05,858                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:05,859                    from ./base//sbml/conversion/SBMLUnitsConverter.h:69:
2023-09-08T19:39:05,860   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:05,860     117 |     struct unary_function
2023-09-08T19:39:05,861         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:06,203   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T19:39:06,204   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:06,205      91 |   if (&rhs == NULL)
2023-09-08T19:39:06,205         |            ^
2023-09-08T19:39:06,206   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2023-09-08T19:39:06,207      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2023-09-08T19:39:06,207         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:06,208   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:06,209   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:39:06,210     126 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T19:39:06,210         |              ^
2023-09-08T19:39:06,211   ./base/sbml/conversion/SBMLUnitsConverter.cpp:124:67: note: ‘props’ declared here
2023-09-08T19:39:06,212     124 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:39:06,212         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:39:07,017   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T19:39:07,018   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:07,019      91 |   if (&rhs == NULL)
2023-09-08T19:39:07,020         |   ^~
2023-09-08T19:39:07,020   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:39:07,021   ./base/sbml/conversion/SBMLUnitsConverter.cpp:126:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:07,021     126 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T19:39:07,022         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:39:14,001   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:14,002                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:14,002                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:14,003                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:39:14,003                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2023-09-08T19:39:14,004   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:14,005      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:14,005         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:14,006   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:14,007                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:14,007                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:14,008                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2023-09-08T19:39:14,009   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:14,010     117 |     struct unary_function
2023-09-08T19:39:14,010         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:15,500   ./base/sbml/extension/ASTBasePlugin.cpp: In member function ‘unsigned int ASTBasePlugin::getPackageVersion() const’:
2023-09-08T19:39:15,501   ./base/sbml/extension/ASTBasePlugin.cpp:354:62: warning: ‘this’ pointer is null [-Wnonnull]
2023-09-08T19:39:15,501     354 |   return (mSBMLExt != NULL) ? 0 : mSBMLExt->getPackageVersion(getURI());
2023-09-08T19:39:15,502         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:18,689   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:18,690                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:18,691                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:18,691                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:18,692                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:18,693                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:18,693                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2023-09-08T19:39:18,694   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:18,695      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:18,695         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:18,696   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:18,697                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:18,697                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:18,698                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2023-09-08T19:39:18,699                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2023-09-08T19:39:18,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:18,700     117 |     struct unary_function
2023-09-08T19:39:18,701         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:22,729   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:22,729                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:22,730                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:22,730                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:39:22,731                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2023-09-08T19:39:22,731   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:22,732      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:22,732         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:22,733   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:22,733                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:22,734                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:22,735                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:39:22,735   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:22,736     117 |     struct unary_function
2023-09-08T19:39:22,736         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:23,048   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T19:39:23,048   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:23,049     119 |   if (&attributes == NULL) return;
2023-09-08T19:39:23,050         |                   ^
2023-09-08T19:39:23,050   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2023-09-08T19:39:23,051     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2023-09-08T19:39:23,051         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:23,052   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:23,053   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:23,054     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:23,054         |                   ^
2023-09-08T19:39:23,055   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2023-09-08T19:39:23,056     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:23,057         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:23,057   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:23,058     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:23,059         |                                                  ^
2023-09-08T19:39:23,059   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:23,060     133 |                                     const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:23,061         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:23,061   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2023-09-08T19:39:23,062   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:39:23,063     169 |   if (&stream == NULL) return;
2023-09-08T19:39:23,064         |               ^
2023-09-08T19:39:23,064   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2023-09-08T19:39:23,065     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2023-09-08T19:39:23,065         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:39:23,554   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:23,555     169 |   if (&stream == NULL) return;
2023-09-08T19:39:23,556         |   ^~
2023-09-08T19:39:23,559   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T19:39:23,559   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:23,560     119 |   if (&attributes == NULL) return;
2023-09-08T19:39:23,561         |   ^~
2023-09-08T19:39:23,561   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:23,562   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:23,563     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:23,563         |                   ^
2023-09-08T19:39:23,564   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:23,565     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:23,565         |                                                  ^
2023-09-08T19:39:27,443   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:27,444                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:27,444                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:27,445                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:39:27,446                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:53,
2023-09-08T19:39:27,446                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2023-09-08T19:39:27,447   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:27,447      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:27,448         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:27,449   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:27,450                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:27,450                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:27,451                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:39:27,452   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:27,452     117 |     struct unary_function
2023-09-08T19:39:27,453         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:27,763   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:27,764   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:27,765      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:27,766         |                   ^
2023-09-08T19:39:27,767   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2023-09-08T19:39:27,767      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:27,768         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:27,768   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:27,769      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:27,769         |                                                  ^
2023-09-08T19:39:27,770   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:27,770      89 |                                           const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:27,771         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:28,240   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:28,241      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:28,242         |                   ^
2023-09-08T19:39:28,242   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:28,243      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:28,244         |                                                  ^
2023-09-08T19:39:31,478   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:31,478                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:31,479                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:31,479                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:31,480                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:31,481                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2023-09-08T19:39:31,481   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:31,482      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:31,483         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:31,483   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:31,484                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:31,485                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:31,485                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:31,486   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:31,486     117 |     struct unary_function
2023-09-08T19:39:31,487         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:31,836   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T19:39:31,837   ./base/sbml/extension/SBMLExtension.cpp:233:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:31,838     233 |   if (&extPoint == NULL) return NULL;
2023-09-08T19:39:31,839         |                 ^
2023-09-08T19:39:31,839   ./base/sbml/extension/SBMLExtension.cpp:231:65: note: ‘extPoint’ declared here
2023-09-08T19:39:31,840     231 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:31,841         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:31,842   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T19:39:31,843   ./base/sbml/extension/SBMLExtension.cpp:304:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:31,843     304 |   if(&uri == NULL) return false;
2023-09-08T19:39:31,844         |           ^
2023-09-08T19:39:31,845   ./base/sbml/extension/SBMLExtension.cpp:302:47: note: ‘uri’ declared here
2023-09-08T19:39:31,845     302 | SBMLExtension::isSupported(const std::string& uri) const
2023-09-08T19:39:31,846         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:32,470   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T19:39:32,471   ./base/sbml/extension/SBMLExtension.cpp:233:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:32,471     233 |   if (&extPoint == NULL) return NULL;
2023-09-08T19:39:32,472         |   ^~
2023-09-08T19:39:32,483   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T19:39:32,483   ./base/sbml/extension/SBMLExtension.cpp:304:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:32,484     304 |   if(&uri == NULL) return false;
2023-09-08T19:39:32,484         |   ^~
2023-09-08T19:39:38,887   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:38,888                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:38,888                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:38,889                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:38,889                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:38,890                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:38,891                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2023-09-08T19:39:38,891   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:38,892      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:38,893         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:38,893   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:38,894                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:39:38,895                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:39:38,895                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2023-09-08T19:39:38,896   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:38,897     117 |     struct unary_function
2023-09-08T19:39:38,897         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:42,942   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:42,942                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:42,943                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:42,944                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:42,944                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:39:42,945                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:39:42,946                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2023-09-08T19:39:42,946   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:42,947      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:42,948         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:42,949   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:42,950                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:42,950                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:42,951                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:42,951   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:42,952     117 |     struct unary_function
2023-09-08T19:39:42,952         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:43,324   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T19:39:43,325   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:39:43,325     103 |   if (&orig != NULL)
2023-09-08T19:39:43,326         |             ^
2023-09-08T19:39:43,326   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2023-09-08T19:39:43,327     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2023-09-08T19:39:43,328         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:39:43,446   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T19:39:43,446   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:43,447     221 |   if(&uri == NULL) return NULL;
2023-09-08T19:39:43,447         |           ^
2023-09-08T19:39:43,448   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2023-09-08T19:39:43,449     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2023-09-08T19:39:43,450         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:43,463   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T19:39:43,464   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:43,465     245 |   if (&extPoint != NULL)
2023-09-08T19:39:43,466         |                 ^
2023-09-08T19:39:43,466   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2023-09-08T19:39:43,467     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:43,468         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:43,469   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T19:39:43,469   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:43,470     272 |   if (&uri != NULL)
2023-09-08T19:39:43,471         |            ^
2023-09-08T19:39:43,472   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2023-09-08T19:39:43,472     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2023-09-08T19:39:43,473         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:43,474   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T19:39:43,475   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:43,475     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:43,476         |                ^
2023-09-08T19:39:43,477   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2023-09-08T19:39:43,477     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T19:39:43,478         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:43,478   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:43,479     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:43,480         |                                ^
2023-09-08T19:39:43,480   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2023-09-08T19:39:43,481     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T19:39:43,481         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:43,482   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T19:39:43,482   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T19:39:43,483     347 |   if (&extPoint == NULL) return 0;
2023-09-08T19:39:43,484         |                 ^
2023-09-08T19:39:43,484   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2023-09-08T19:39:43,485     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2023-09-08T19:39:43,486         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:39:43,487   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2023-09-08T19:39:43,487   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2023-09-08T19:39:43,488     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2023-09-08T19:39:43,489         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T19:39:44,351   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T19:39:44,351   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,352     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:44,353         |                ^
2023-09-08T19:39:44,353   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,354     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T19:39:44,355         |                                ^
2023-09-08T19:39:44,355   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T19:39:44,356   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,357     347 |   if (&extPoint == NULL) return 0;
2023-09-08T19:39:44,357         |   ^~
2023-09-08T19:39:44,358   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T19:39:44,359   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,360     245 |   if (&extPoint != NULL)
2023-09-08T19:39:44,360         |   ^~
2023-09-08T19:39:44,361   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T19:39:44,361   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,362     272 |   if (&uri != NULL)
2023-09-08T19:39:44,362         |   ^~
2023-09-08T19:39:44,364   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T19:39:44,365   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,365     221 |   if(&uri == NULL) return NULL;
2023-09-08T19:39:44,366         |   ^~
2023-09-08T19:39:44,369   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T19:39:44,369   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:44,370     103 |   if (&orig != NULL)
2023-09-08T19:39:44,370         |   ^~
2023-09-08T19:39:48,737   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:48,737   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T19:39:48,738      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:48,739         |            ^
2023-09-08T19:39:48,739   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2023-09-08T19:39:48,740      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:48,741         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:48,742   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:48,743      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:48,743         |                            ^
2023-09-08T19:39:48,744   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2023-09-08T19:39:48,745      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:48,746         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:48,746   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:48,747   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T19:39:48,748     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:48,748         |            ^
2023-09-08T19:39:48,749   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2023-09-08T19:39:48,750     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:48,750         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:48,751   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:39:48,752     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:48,753         |                            ^
2023-09-08T19:39:48,754   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2023-09-08T19:39:48,754     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T19:39:48,755         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:49,067   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:49,067   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:49,068      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:49,069         |            ^
2023-09-08T19:39:49,069   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:49,070      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:49,070         |                            ^
2023-09-08T19:39:49,071   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T19:39:49,072   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:49,072     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:49,073         |            ^
2023-09-08T19:39:49,074   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:49,075     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T19:39:49,075         |                            ^
2023-09-08T19:39:52,443   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:52,445                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:52,446                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:52,447                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:39:52,494                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2023-09-08T19:39:52,495   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:52,496      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:52,498         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:52,498   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:52,499                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:52,500                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:39:52,501                    from ./base//sbml/extension/SBasePlugin.h:252:
2023-09-08T19:39:52,502   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:52,504     117 |     struct unary_function
2023-09-08T19:39:52,554         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:52,831   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:52,832   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:39:52,833     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:52,833         |                   ^
2023-09-08T19:39:52,834   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2023-09-08T19:39:52,834     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:39:52,835         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:39:52,836   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:39:52,837     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:52,837         |                                                  ^
2023-09-08T19:39:52,838   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2023-09-08T19:39:52,838     576 |                              const ExpectedAttributes& expectedAttributes)
2023-09-08T19:39:52,839         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:39:52,841   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T19:39:52,842   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:52,842     683 |   if(&element == NULL) return;
2023-09-08T19:39:52,843         |               ^
2023-09-08T19:39:52,843   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2023-09-08T19:39:52,844     678 | SBasePlugin::logUnknownElement(const std::string &element,
2023-09-08T19:39:52,845         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:52,852   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:52,853   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:39:52,854     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:52,854         |                  ^
2023-09-08T19:39:52,855   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2023-09-08T19:39:52,856     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2023-09-08T19:39:52,856         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:39:52,857   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:52,858     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:52,858         |                                      ^
2023-09-08T19:39:52,859   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2023-09-08T19:39:52,860     714 |                                  const std::string& element)
2023-09-08T19:39:52,861         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:52,866   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:52,867   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:39:52,868     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:52,868         |                  ^
2023-09-08T19:39:52,869   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2023-09-08T19:39:52,870     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2023-09-08T19:39:52,870         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:39:52,871   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:39:52,872     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:52,872         |                                      ^
2023-09-08T19:39:52,873   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2023-09-08T19:39:52,874     748 |                                     const std::string& element)
2023-09-08T19:39:52,875         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:39:53,426   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:39:53,427   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,427     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:53,428         |                   ^
2023-09-08T19:39:53,428   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,429     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:39:53,429         |                                                  ^
2023-09-08T19:39:53,431   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T19:39:53,432   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,432     683 |   if(&element == NULL) return;
2023-09-08T19:39:53,433         |   ^~
2023-09-08T19:39:53,434   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:53,434   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,435     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:53,435         |                  ^
2023-09-08T19:39:53,436   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,436     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:53,437         |                                      ^
2023-09-08T19:39:53,437   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T19:39:53,438   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,438     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:53,439         |                  ^
2023-09-08T19:39:53,440   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:53,440     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:39:53,441         |                                      ^
2023-09-08T19:39:58,276   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:39:58,276                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:39:58,277                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:39:58,278                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:39:58,279                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2023-09-08T19:39:58,279   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:39:58,280      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:39:58,281         |                           ^~~~~~~~~~~~~~
2023-09-08T19:39:58,282   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:39:58,282                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:39:58,283                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:39:58,284                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:39:58,285   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:39:58,285     117 |     struct unary_function
2023-09-08T19:39:58,286         |            ^~~~~~~~~~~~~~
2023-09-08T19:39:58,580   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2023-09-08T19:39:58,581   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T19:39:58,581     148 |   if (&uri == NULL) return false;
2023-09-08T19:39:58,582         |            ^
2023-09-08T19:39:58,583   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2023-09-08T19:39:58,584     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2023-09-08T19:39:58,585         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:39:59,076   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:39:59,076     148 |   if (&uri == NULL) return false;
2023-09-08T19:39:59,077         |   ^~
2023-09-08T19:40:02,853   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:40:02,854                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:02,855                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:02,855                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:40:02,856                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:40:02,857                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T19:40:02,857                    from ./base/sbml/math/ASTBase.cpp:43:
2023-09-08T19:40:02,858   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:02,859      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:02,860         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:02,860   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:02,861                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:02,861                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:02,862                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:02,863                    from ./base/sbml/math/ASTBase.cpp:41:
2023-09-08T19:40:02,864   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:02,864     117 |     struct unary_function
2023-09-08T19:40:02,865         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:03,204   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:03,205      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:03,206         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:40:03,207   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:03,207     117 |     struct unary_function
2023-09-08T19:40:03,208         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:03,209   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:03,209      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:03,210         |                                       ^~~~~~~~~~~~~~
2023-09-08T19:40:03,211   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:03,212     117 |     struct unary_function
2023-09-08T19:40:03,213         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:03,213   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:03,214      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T19:40:03,214         |                                              ^~~~~~~~~~~~~~
2023-09-08T19:40:03,215   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:03,215     117 |     struct unary_function
2023-09-08T19:40:03,216         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:03,289   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T19:40:03,290   ./base/sbml/math/ASTBase.cpp:1467:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,291    1467 |   if (&stream == NULL) return;
2023-09-08T19:40:03,292         |               ^
2023-09-08T19:40:03,293   ./base/sbml/math/ASTBase.cpp:1465:36: note: ‘stream’ declared here
2023-09-08T19:40:03,293    1465 |                 , XMLOutputStream& stream ) const
2023-09-08T19:40:03,294         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,296   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T19:40:03,296   ./base/sbml/math/ASTBase.cpp:1498:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T19:40:03,297    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,298         |                 ^
2023-09-08T19:40:03,299   ./base/sbml/math/ASTBase.cpp:1494:50: note: ‘mantissa’ declared here
2023-09-08T19:40:03,299    1494 | ASTBase::writeENotation (  const std::string&    mantissa
2023-09-08T19:40:03,300         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:40:03,301   ./base/sbml/math/ASTBase.cpp:1498:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2023-09-08T19:40:03,302    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,303         |                                      ^
2023-09-08T19:40:03,303   ./base/sbml/math/ASTBase.cpp:1495:56: note: ‘exponent’ declared here
2023-09-08T19:40:03,304    1495 |                                , const std::string&    exponent
2023-09-08T19:40:03,305         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:40:03,306   ./base/sbml/math/ASTBase.cpp:1498:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,306    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,307         |                                                         ^
2023-09-08T19:40:03,308   ./base/sbml/math/ASTBase.cpp:1496:36: note: ‘stream’ declared here
2023-09-08T19:40:03,308    1496 |                 , XMLOutputStream& stream ) const
2023-09-08T19:40:03,309         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,310   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T19:40:03,311   ./base/sbml/math/ASTBase.cpp:1511:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,311    1511 |   if (&stream == NULL) return;
2023-09-08T19:40:03,312         |               ^
2023-09-08T19:40:03,313   ./base/sbml/math/ASTBase.cpp:1509:44: note: ‘stream’ declared here
2023-09-08T19:40:03,314    1509 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2023-09-08T19:40:03,315         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,316   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T19:40:03,316   ./base/sbml/math/ASTBase.cpp:1522:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,317    1522 |   if (&stream == NULL) return;
2023-09-08T19:40:03,317         |               ^
2023-09-08T19:40:03,318   ./base/sbml/math/ASTBase.cpp:1520:41: note: ‘stream’ declared here
2023-09-08T19:40:03,318    1520 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2023-09-08T19:40:03,319         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,319   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T19:40:03,320   ./base/sbml/math/ASTBase.cpp:1532:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,321    1532 |   if (&stream == NULL) return;
2023-09-08T19:40:03,321         |               ^
2023-09-08T19:40:03,322   ./base/sbml/math/ASTBase.cpp:1530:49: note: ‘stream’ declared here
2023-09-08T19:40:03,322    1530 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2023-09-08T19:40:03,323         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,332   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T19:40:03,332   ./base/sbml/math/ASTBase.cpp:1812:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:40:03,333    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:03,334         |                ^
2023-09-08T19:40:03,335   ./base/sbml/math/ASTBase.cpp:1809:60: note: ‘element’ declared here
2023-09-08T19:40:03,336    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:40:03,337         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:40:03,338   ./base/sbml/math/ASTBase.cpp:1812:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:03,339    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:03,339         |                                   ^
2023-09-08T19:40:03,340   ./base/sbml/math/ASTBase.cpp:1809:36: note: ‘stream’ declared here
2023-09-08T19:40:03,341    1809 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T19:40:03,342         |                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:03,963   ./base/sbml/math/ASTBase.cpp:1812:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,964    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:03,964         |                                   ^
2023-09-08T19:40:03,965   ./base/sbml/math/ASTBase.cpp:1812:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,966    1812 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T19:40:03,966         |                ^
2023-09-08T19:40:03,987   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T19:40:03,988   ./base/sbml/math/ASTBase.cpp:1498:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,989    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,990         |                 ^
2023-09-08T19:40:03,990   ./base/sbml/math/ASTBase.cpp:1498:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,991    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,992         |                                      ^
2023-09-08T19:40:03,993   ./base/sbml/math/ASTBase.cpp:1498:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,993    1498 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T19:40:03,994         |                                              ^
2023-09-08T19:40:03,994   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T19:40:03,995   ./base/sbml/math/ASTBase.cpp:1511:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,995    1511 |   if (&stream == NULL) return;
2023-09-08T19:40:03,996         |   ^~
2023-09-08T19:40:03,996   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T19:40:03,997   ./base/sbml/math/ASTBase.cpp:1522:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,997    1522 |   if (&stream == NULL) return;
2023-09-08T19:40:03,998         |   ^~
2023-09-08T19:40:03,998   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T19:40:03,999   ./base/sbml/math/ASTBase.cpp:1532:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:03,999    1532 |   if (&stream == NULL) return;
2023-09-08T19:40:04,000         |   ^~
2023-09-08T19:40:04,006   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T19:40:04,006   ./base/sbml/math/ASTBase.cpp:1467:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:04,007    1467 |   if (&stream == NULL) return;
2023-09-08T19:40:04,008         |   ^~
2023-09-08T19:40:10,881   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:10,882   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:10,882     326 |   if (&stream == NULL) return;
2023-09-08T19:40:10,883         |               ^
2023-09-08T19:40:10,884   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2023-09-08T19:40:10,885     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:10,885         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:11,302   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:11,303     326 |   if (&stream == NULL) return;
2023-09-08T19:40:11,304         |   ^~
2023-09-08T19:40:14,878   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:40:14,879                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:14,879                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:14,880                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:40:14,881                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2023-09-08T19:40:14,882   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:14,882      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:14,883         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:14,884   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:14,885                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:14,886                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:14,886                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:14,887                    from ./base//sbml/math/ASTCSymbol.h:42,
2023-09-08T19:40:14,888                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2023-09-08T19:40:14,888   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:14,889     117 |     struct unary_function
2023-09-08T19:40:14,889         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:19,627   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:19,627   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:19,628      54 |   if (&s == NULL) return s;
2023-09-08T19:40:19,629         |          ^
2023-09-08T19:40:19,629   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:19,630      52 | trim (const string& s)
2023-09-08T19:40:19,630         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:20,080   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:20,081      54 |   if (&s == NULL) return s;
2023-09-08T19:40:20,081         |   ^~
2023-09-08T19:40:23,252   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:23,252   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:23,253      54 |   if (&s == NULL) return s;
2023-09-08T19:40:23,254         |          ^
2023-09-08T19:40:23,254   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:23,255      52 | trim (const string& s)
2023-09-08T19:40:23,256         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:23,273   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:23,274   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:23,274     273 |   if (&stream == NULL) return;
2023-09-08T19:40:23,275         |               ^
2023-09-08T19:40:23,276   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2023-09-08T19:40:23,277     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:23,277         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:23,716   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:23,717   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:23,718      54 |   if (&s == NULL) return s;
2023-09-08T19:40:23,718         |   ^~
2023-09-08T19:40:23,720   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:23,721   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:23,721     273 |   if (&stream == NULL) return;
2023-09-08T19:40:23,722         |   ^~
2023-09-08T19:40:27,114   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:27,115   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:27,116      54 |   if (&s == NULL) return s;
2023-09-08T19:40:27,117         |          ^
2023-09-08T19:40:27,117   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:27,118      52 | trim (const string& s)
2023-09-08T19:40:27,119         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:27,563   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:27,563      54 |   if (&s == NULL) return s;
2023-09-08T19:40:27,564         |   ^~
2023-09-08T19:40:30,646   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:30,647   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:30,647     216 |   if (&stream == NULL) return;
2023-09-08T19:40:30,648         |               ^
2023-09-08T19:40:30,649   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2023-09-08T19:40:30,649     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:30,650         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:31,068   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:31,068     216 |   if (&stream == NULL) return;
2023-09-08T19:40:31,069         |   ^~
2023-09-08T19:40:33,783   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:33,784   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:33,785      54 |   if (&s == NULL) return s;
2023-09-08T19:40:33,785         |          ^
2023-09-08T19:40:33,786   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T19:40:33,786      52 | trim (const string& s)
2023-09-08T19:40:33,787         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:34,236   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:34,237      54 |   if (&s == NULL) return s;
2023-09-08T19:40:34,238         |   ^~
2023-09-08T19:40:37,367   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2023-09-08T19:40:37,368   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T19:40:37,369     116 |   if (&(units) == NULL)
2023-09-08T19:40:37,369         |                ^
2023-09-08T19:40:37,370   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2023-09-08T19:40:37,371     114 | ASTCnBase::setUnits(const std::string& units)
2023-09-08T19:40:37,372         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:40:37,805   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:37,806     116 |   if (&(units) == NULL)
2023-09-08T19:40:37,807         |   ^~
2023-09-08T19:40:54,133   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2023-09-08T19:40:54,134   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:40:54,135     179 |   if (&stream == NULL) return;
2023-09-08T19:40:54,135         |               ^
2023-09-08T19:40:54,136   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2023-09-08T19:40:54,137     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2023-09-08T19:40:54,137         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:40:54,539   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:54,540     179 |   if (&stream == NULL) return;
2023-09-08T19:40:54,540         |   ^~
2023-09-08T19:40:57,831   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:40:57,832                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:40:57,833                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:40:57,833                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:40:57,834                    from ./base/sbml/math/ASTFunction.cpp:38:
2023-09-08T19:40:57,835   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:40:57,835      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:40:57,836         |                           ^~~~~~~~~~~~~~
2023-09-08T19:40:57,836   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:40:57,837                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:40:57,837                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:40:57,838                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:40:57,839                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:40:57,839                    from ./base/sbml/math/ASTFunction.cpp:36:
2023-09-08T19:40:57,840   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:40:57,840     117 |     struct unary_function
2023-09-08T19:40:57,841         |            ^~~~~~~~~~~~~~
2023-09-08T19:40:58,131   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T19:40:58,132   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T19:40:58,133     148 |   if (&s == NULL) return s;
2023-09-08T19:40:58,133         |          ^
2023-09-08T19:40:58,134   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2023-09-08T19:40:58,135     146 | trim (const string& s)
2023-09-08T19:40:58,135         |       ~~~~~~~~~~~~~~^
2023-09-08T19:40:58,951   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:40:58,952     148 |   if (&s == NULL) return s;
2023-09-08T19:40:58,952         |   ^~
2023-09-08T19:41:06,692   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2023-09-08T19:41:06,692   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:06,693     349 |   if (&stream == NULL) return;
2023-09-08T19:41:06,694         |               ^
2023-09-08T19:41:06,694   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2023-09-08T19:41:06,695     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2023-09-08T19:41:06,696         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:07,202   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:07,203     349 |   if (&stream == NULL) return;
2023-09-08T19:41:07,203         |   ^~
2023-09-08T19:41:10,461   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:10,462   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:10,462     324 |   if (&stream == NULL) return;
2023-09-08T19:41:10,463         |               ^
2023-09-08T19:41:10,464   ./base/sbml/math/ASTLambdaFunctionNode.cpp:322:47: note: ‘stream’ declared here
2023-09-08T19:41:10,465     322 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:10,465         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:10,910   ./base/sbml/math/ASTLambdaFunctionNode.cpp:324:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:10,911     324 |   if (&stream == NULL) return;
2023-09-08T19:41:10,912         |   ^~
2023-09-08T19:41:13,654   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:13,655   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:13,656     373 |   if (&stream == NULL) return;
2023-09-08T19:41:13,656         |               ^
2023-09-08T19:41:13,657   ./base/sbml/math/ASTNaryFunctionNode.cpp:371:45: note: ‘stream’ declared here
2023-09-08T19:41:13,657     371 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:13,658         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:14,086   ./base/sbml/math/ASTNaryFunctionNode.cpp:373:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:14,087     373 |   if (&stream == NULL) return;
2023-09-08T19:41:14,088         |   ^~
2023-09-08T19:41:17,886   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:41:17,887                    from ./base//sbml/Model.h:409,
2023-09-08T19:41:17,888                    from ./base/sbml/math/ASTNode.cpp:41:
2023-09-08T19:41:17,888   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:17,889      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:17,890         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:17,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:17,891                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:17,892                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:17,892                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:17,893                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:41:17,894                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:41:17,895                    from ./base/sbml/math/ASTNode.cpp:34:
2023-09-08T19:41:17,895   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:17,896     117 |     struct unary_function
2023-09-08T19:41:17,896         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:18,244   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:18,245     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2023-09-08T19:41:18,245         |                                       ^~~~~~~~~~~~~~
2023-09-08T19:41:18,246   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:18,247     117 |     struct unary_function
2023-09-08T19:41:18,248         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:18,399   ./base/sbml/math/ASTNode.cpp: In member function ‘unsigned int ASTNode::getNumVariablesWithUndeclaredUnits(Model*) const’:
2023-09-08T19:41:18,400   ./base/sbml/math/ASTNode.cpp:3136:10: warning: variable ‘allowSpeciesRef’ set but not used [-Wunused-but-set-variable]
2023-09-08T19:41:18,401    3136 |     bool allowSpeciesRef = false;
2023-09-08T19:41:18,401         |          ^~~~~~~~~~~~~~~
2023-09-08T19:41:27,944   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:41:27,944                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:41:27,945                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:41:27,946                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:41:27,946                    from ./base/sbml/math/ASTNumber.cpp:38:
2023-09-08T19:41:27,947   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:27,948      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:27,949         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:27,950   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:27,950                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:27,951                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:27,951                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:27,952                    from ./base//sbml/math/ASTNumber.h:42,
2023-09-08T19:41:27,952                    from ./base/sbml/math/ASTNumber.cpp:36:
2023-09-08T19:41:27,953   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:27,953     117 |     struct unary_function
2023-09-08T19:41:27,954         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:34,250   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:34,250   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:34,251     714 |   if (&stream == NULL) return;
2023-09-08T19:41:34,251         |               ^
2023-09-08T19:41:34,252   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2023-09-08T19:41:34,253     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:34,253         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:34,708   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:34,709     714 |   if (&stream == NULL) return;
2023-09-08T19:41:34,709         |   ^~
2023-09-08T19:41:37,758   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:37,759   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:37,760     157 |   if (&stream == NULL) return;
2023-09-08T19:41:37,760         |               ^
2023-09-08T19:41:37,761   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2023-09-08T19:41:37,762     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:37,763         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:38,169   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:38,170     157 |   if (&stream == NULL) return;
2023-09-08T19:41:38,171         |   ^~
2023-09-08T19:41:40,710   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:40,710   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:40,711     255 |   if (&stream == NULL) return;
2023-09-08T19:41:40,712         |               ^
2023-09-08T19:41:40,712   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2023-09-08T19:41:40,713     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:40,714         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:41,143   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:41,144     255 |   if (&stream == NULL) return;
2023-09-08T19:41:41,144         |   ^~
2023-09-08T19:41:45,017   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:41:45,018                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:41:45,019                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:41:45,020                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T19:41:45,020                    from ./base/sbml/math/ASTTypes.cpp:38:
2023-09-08T19:41:45,021   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:45,021      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:45,022         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:45,023   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:45,023                    from ./base//sbml/math/ASTTypes.h:183,
2023-09-08T19:41:45,024                    from ./base/sbml/math/ASTTypes.cpp:36:
2023-09-08T19:41:45,024   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:45,025     117 |     struct unary_function
2023-09-08T19:41:45,025         |            ^~~~~~~~~~~~~~
2023-09-08T19:41:45,322   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T19:41:45,323   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:41:45,323     439 |   if (&name == NULL)
2023-09-08T19:41:45,324         |             ^
2023-09-08T19:41:45,325   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2023-09-08T19:41:45,325     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2023-09-08T19:41:45,326         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:41:45,327   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T19:41:45,327   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:41:45,328     465 |   if (&name == NULL)
2023-09-08T19:41:45,329         |             ^
2023-09-08T19:41:45,329   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2023-09-08T19:41:45,330     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2023-09-08T19:41:45,331         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:41:45,797   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T19:41:45,798   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:45,799     439 |   if (&name == NULL)
2023-09-08T19:41:45,799         |   ^~
2023-09-08T19:41:45,800   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T19:41:45,801   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:45,802     465 |   if (&name == NULL)
2023-09-08T19:41:45,802         |   ^~
2023-09-08T19:41:48,239   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T19:41:48,240   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:41:48,241     192 |   if (&stream == NULL) return;
2023-09-08T19:41:48,241         |               ^
2023-09-08T19:41:48,242   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2023-09-08T19:41:48,243     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T19:41:48,244         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:41:48,648   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:41:48,649     192 |   if (&stream == NULL) return;
2023-09-08T19:41:48,650         |   ^~
2023-09-08T19:41:53,861   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:41:53,861                    from ./base//sbml/Model.h:409,
2023-09-08T19:41:53,862                    from L3Parser.ypp:78:
2023-09-08T19:41:53,862   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:41:53,863      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:41:53,863         |                           ^~~~~~~~~~~~~~
2023-09-08T19:41:53,864   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:41:53,864                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:41:53,865                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:41:53,865                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T19:41:53,866                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T19:41:53,866                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T19:41:53,867                    from ./base//sbml/math/L3Parser.h:37,
2023-09-08T19:41:53,867                    from L3Parser.ypp:77:
2023-09-08T19:41:53,868   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:41:53,868     117 |     struct unary_function
2023-09-08T19:41:53,869         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:03,008   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T19:42:03,009   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:42:03,009      90 |   if (&stream == NULL) return NULL;
2023-09-08T19:42:03,010         |               ^
2023-09-08T19:42:03,011   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2023-09-08T19:42:03,012      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2023-09-08T19:42:03,012         |             ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:42:03,014   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T19:42:03,014   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T19:42:03,015     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T19:42:03,016         |                               ^
2023-09-08T19:42:03,016   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2023-09-08T19:42:03,017     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T19:42:03,018         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:42:03,464   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T19:42:03,465   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:03,466      90 |   if (&stream == NULL) return NULL;
2023-09-08T19:42:03,466         |   ^~
2023-09-08T19:42:03,467   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T19:42:03,467   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:03,468     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T19:42:03,469         |                               ^
2023-09-08T19:42:07,194   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:07,195                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:07,196                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:07,197                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:07,198                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:07,198                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:42:07,199                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2023-09-08T19:42:07,200   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:07,201      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:07,201         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:07,202   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:07,202                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:42:07,203                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:42:07,203                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:42:07,204   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:07,204     117 |     struct unary_function
2023-09-08T19:42:07,205         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:12,931   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:12,931                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:12,932                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:12,933                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:12,933                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2023-09-08T19:42:12,934                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2023-09-08T19:42:12,934   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:12,935      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:12,936         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:12,936   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:12,937                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:12,938                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:12,939                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:12,939                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:12,940                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2023-09-08T19:42:12,941   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:12,942     117 |     struct unary_function
2023-09-08T19:42:12,943         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:25,355   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:25,356                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:25,357                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:25,357                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:25,358                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:68,
2023-09-08T19:42:25,359                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2023-09-08T19:42:25,359   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:25,360      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:25,361         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:25,362   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:25,362                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:25,363                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:25,364                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:25,364                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:25,365                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2023-09-08T19:42:25,366   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:25,366     117 |     struct unary_function
2023-09-08T19:42:25,367         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:33,351   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:33,351                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:33,352                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:33,353                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:42:33,353                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:65,
2023-09-08T19:42:33,354                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2023-09-08T19:42:33,354   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:33,355      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:33,355         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:33,356   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:33,357                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:33,357                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:33,358                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:33,358                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:33,359                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2023-09-08T19:42:33,360   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:33,360     117 |     struct unary_function
2023-09-08T19:42:33,361         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:33,784   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2023-09-08T19:42:33,785   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:33,786     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:33,786         |                  ^
2023-09-08T19:42:33,787   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2023-09-08T19:42:33,788     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2023-09-08T19:42:33,789         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:33,790   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T19:42:33,791     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:33,791         |                                             ^
2023-09-08T19:42:33,792   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2023-09-08T19:42:33,793     451 |                               const std::string& wrongattribute)
2023-09-08T19:42:33,793         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:42:34,361   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:34,362     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:34,363         |                  ^
2023-09-08T19:42:34,363   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:34,364     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:34,365         |                                             ^
2023-09-08T19:42:39,186   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:39,187                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:39,187                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:39,188                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:39,188                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:39,189                    from ./base//sbml/packages/comp/sbml/CompBase.h:43,
2023-09-08T19:42:39,189                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2023-09-08T19:42:39,190   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:39,191      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:39,191         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:39,192   In file included from /usr/include/c++/12/bits/stl_tree.h:65,
2023-09-08T19:42:39,192                    from /usr/include/c++/12/set:60,
2023-09-08T19:42:39,193                    from ./base//sbml/packages/comp/sbml/CompBase.h:40:
2023-09-08T19:42:39,193   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:39,194     117 |     struct unary_function
2023-09-08T19:42:39,194         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:39,668   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:42:39,668   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T19:42:39,669     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:39,670         |                   ^
2023-09-08T19:42:39,670   ./base/sbml/packages/comp/sbml/CompBase.cpp:150:48: note: ‘attributes’ declared here
2023-09-08T19:42:39,671     150 | CompBase::readAttributes (const XMLAttributes& attributes,
2023-09-08T19:42:39,672         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T19:42:39,673   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T19:42:39,673     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:39,674         |                                                  ^
2023-09-08T19:42:39,675   ./base/sbml/packages/comp/sbml/CompBase.cpp:151:53: note: ‘expectedAttributes’ declared here
2023-09-08T19:42:39,676     151 |                           const ExpectedAttributes& expectedAttributes)
2023-09-08T19:42:39,676         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:42:39,677   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T19:42:39,678   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:39,678     199 |   if(&element == NULL) return;
2023-09-08T19:42:39,679         |               ^
2023-09-08T19:42:39,680   ./base/sbml/packages/comp/sbml/CompBase.cpp:197:48: note: ‘element’ declared here
2023-09-08T19:42:39,680     197 | CompBase::logUnknownElement(const std::string &element)
2023-09-08T19:42:39,681         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:39,682   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:39,683   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:39,684     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,685         |                  ^
2023-09-08T19:42:39,686   ./base/sbml/packages/comp/sbml/CompBase.cpp:222:50: note: ‘attribute’ declared here
2023-09-08T19:42:39,686     222 | CompBase::logUnknownAttribute(const std::string &attribute,
2023-09-08T19:42:39,687         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:39,688   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:39,688     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,689         |                                      ^
2023-09-08T19:42:39,689   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘element’ declared here
2023-09-08T19:42:39,690     223 |                               const std::string& element)
2023-09-08T19:42:39,691         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:39,693   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T19:42:39,694   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:39,695     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,695         |                  ^
2023-09-08T19:42:39,696   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘attribute’ declared here
2023-09-08T19:42:39,697     257 | CompBase::logEmptyString(const std::string &attribute,
2023-09-08T19:42:39,697         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:39,698   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:39,699     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,700         |                                      ^
2023-09-08T19:42:39,700   ./base/sbml/packages/comp/sbml/CompBase.cpp:258:45: note: ‘element’ declared here
2023-09-08T19:42:39,701     258 |                          const std::string& element)
2023-09-08T19:42:39,702         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:39,703   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:42:39,703   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:39,704     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:39,705         |                  ^
2023-09-08T19:42:39,706   ./base/sbml/packages/comp/sbml/CompBase.cpp:280:43: note: ‘attribute’ declared here
2023-09-08T19:42:39,706     280 | CompBase::logInvalidId(const std::string& attribute,
2023-09-08T19:42:39,707         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:39,708   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T19:42:39,708     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:39,709         |                                             ^
2023-09-08T19:42:39,710   ./base/sbml/packages/comp/sbml/CompBase.cpp:281:43: note: ‘wrongattribute’ declared here
2023-09-08T19:42:39,710     281 |                        const std::string& wrongattribute,
2023-09-08T19:42:39,711         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:42:39,724   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:39,725   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T19:42:39,726     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,726         |                  ^
2023-09-08T19:42:39,727   ./base/sbml/packages/comp/sbml/CompBase.cpp:379:50: note: ‘attribute’ declared here
2023-09-08T19:42:39,728     379 | CompBase::logMissingAttribute(const std::string& attribute,
2023-09-08T19:42:39,728         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:42:39,729   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T19:42:39,729     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:39,730         |                                      ^
2023-09-08T19:42:39,730   ./base/sbml/packages/comp/sbml/CompBase.cpp:380:50: note: ‘element’ declared here
2023-09-08T19:42:39,731     380 |                               const std::string& element)
2023-09-08T19:42:39,732         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:42:40,426   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T19:42:40,426   ./base/sbml/packages/comp/sbml/CompBase.cpp:199:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,427     199 |   if(&element == NULL) return;
2023-09-08T19:42:40,427         |   ^~
2023-09-08T19:42:40,428   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:40,429   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,429     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,430         |                  ^
2023-09-08T19:42:40,431   ./base/sbml/packages/comp/sbml/CompBase.cpp:225:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,432     225 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,432         |                                      ^
2023-09-08T19:42:40,433   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T19:42:40,434   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,434     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,435         |                  ^
2023-09-08T19:42:40,436   ./base/sbml/packages/comp/sbml/CompBase.cpp:261:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,436     261 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,437         |                                      ^
2023-09-08T19:42:40,438   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T19:42:40,438   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,439     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:40,440         |                  ^
2023-09-08T19:42:40,441   ./base/sbml/packages/comp/sbml/CompBase.cpp:285:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,441     285 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T19:42:40,442         |                                             ^
2023-09-08T19:42:40,443   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T19:42:40,444   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,445     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,445         |                  ^
2023-09-08T19:42:40,446   ./base/sbml/packages/comp/sbml/CompBase.cpp:383:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,446     383 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T19:42:40,447         |                                      ^
2023-09-08T19:42:40,448   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:42:40,448   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,449     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:40,450         |                   ^
2023-09-08T19:42:40,451   ./base/sbml/packages/comp/sbml/CompBase.cpp:154:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:42:40,451     154 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T19:42:40,452         |                                                  ^
2023-09-08T19:42:46,258   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:46,259                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:46,259                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:46,260                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:46,261                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:46,261                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:42:46,262                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2023-09-08T19:42:46,263   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:46,264      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:46,265         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:46,265   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:46,266                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:46,267                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:46,268                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:46,268                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:46,269                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:42:46,269                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2023-09-08T19:42:46,270   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:46,271     117 |     struct unary_function
2023-09-08T19:42:46,271         |            ^~~~~~~~~~~~~~
2023-09-08T19:42:52,175   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:42:52,176                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:42:52,177                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:42:52,178                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:42:52,178                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:42:52,179                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:42:52,180                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2023-09-08T19:42:52,181   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:42:52,181      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:42:52,182         |                           ^~~~~~~~~~~~~~
2023-09-08T19:42:52,183   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:42:52,183                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:42:52,184                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:42:52,184                    from /usr/include/c++/12/ios:42,
2023-09-08T19:42:52,185                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:42:52,185                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:42:52,186                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2023-09-08T19:42:52,186   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:42:52,187     117 |     struct unary_function
2023-09-08T19:42:52,187         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:01,641   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:01,641                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:01,642                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:01,642                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:01,643                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:01,643                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:01,644                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2023-09-08T19:43:01,644   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:01,645      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:01,645         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:01,646   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:01,647                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:01,647                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:01,648                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:01,649                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:01,649                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:01,650                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2023-09-08T19:43:01,651   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:01,651     117 |     struct unary_function
2023-09-08T19:43:01,652         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:02,047   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2023-09-08T19:43:02,048   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:43:02,048     118 |   if (&(sid) != NULL)
2023-09-08T19:43:02,049         |              ^
2023-09-08T19:43:02,050   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2023-09-08T19:43:02,051     113 | ListOfDeletions::remove (const std::string& sid)
2023-09-08T19:43:02,051         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:43:02,616   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:43:02,617     118 |   if (&(sid) != NULL)
2023-09-08T19:43:02,618         |   ^~
2023-09-08T19:43:06,683   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:06,684                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:06,684                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:06,685                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:06,685                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:06,686                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:06,686                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2023-09-08T19:43:06,687   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:06,688      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:06,688         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:06,689   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:06,689                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:06,690                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:06,690                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:06,691                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:06,691                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:06,692                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2023-09-08T19:43:06,692   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:06,693     117 |     struct unary_function
2023-09-08T19:43:06,694         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:11,748   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:11,749                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:11,749                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:11,750                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:11,750                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:11,751                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:11,751                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2023-09-08T19:43:11,752   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:11,752      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:11,753         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:11,754   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:11,754                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:11,755                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:11,756                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:11,756                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:11,757                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:11,757                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2023-09-08T19:43:11,758   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:11,759     117 |     struct unary_function
2023-09-08T19:43:11,759         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:16,781   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:16,782                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:16,783                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:16,783                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:16,784                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:16,785                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:16,786                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2023-09-08T19:43:16,786   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:16,787      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:16,788         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:16,788   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:16,789                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:16,789                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:16,790                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:16,790                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:16,791                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:16,792                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2023-09-08T19:43:16,792   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:16,793     117 |     struct unary_function
2023-09-08T19:43:16,793         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:17,180   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2023-09-08T19:43:17,180   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:43:17,181     113 |   if (&(sid) != NULL)
2023-09-08T19:43:17,182         |              ^
2023-09-08T19:43:17,182   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2023-09-08T19:43:17,183     108 | ListOfPorts::remove (const std::string& sid)
2023-09-08T19:43:17,184         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:43:17,734   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:43:17,735     113 |   if (&(sid) != NULL)
2023-09-08T19:43:17,735         |   ^~
2023-09-08T19:43:21,724   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:21,724                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:21,725                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:21,726                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:21,726                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:21,727                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:21,728                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2023-09-08T19:43:21,728   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:21,729      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:21,729         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:21,730   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:21,731                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:21,731                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:21,732                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:21,732                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:21,733                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:21,734                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2023-09-08T19:43:21,734   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:21,735     117 |     struct unary_function
2023-09-08T19:43:21,735         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:26,362   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:26,363                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:26,363                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:26,364                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:26,364                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:26,365                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:26,365                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2023-09-08T19:43:26,366   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:26,366      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:26,367         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:26,367   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:26,368                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:26,369                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:26,369                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:26,370                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:26,370                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:26,371                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2023-09-08T19:43:26,371   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:26,372     117 |     struct unary_function
2023-09-08T19:43:26,372         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:26,767   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2023-09-08T19:43:26,768   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T19:43:26,769     113 |   if (&(sid) != NULL)
2023-09-08T19:43:26,769         |              ^
2023-09-08T19:43:26,770   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2023-09-08T19:43:26,771     108 | ListOfSubmodels::remove (const std::string& sid)
2023-09-08T19:43:26,771         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:43:27,327   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:43:27,327     113 |   if (&(sid) != NULL)
2023-09-08T19:43:27,328         |   ^~
2023-09-08T19:43:31,358   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:31,358                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:31,359                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:31,360                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:31,360                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:31,361                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:31,362                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2023-09-08T19:43:31,362   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:31,363      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:31,364         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:31,364   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:31,365                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:31,366                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:31,367                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:31,367                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:31,368                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:31,369                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2023-09-08T19:43:31,369   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:31,369     117 |     struct unary_function
2023-09-08T19:43:31,370         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:36,141   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:36,142                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:36,142                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:36,143                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:36,143                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:36,144                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:36,144                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2023-09-08T19:43:36,145   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:36,145      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:36,146         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:36,146   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:36,147                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:36,147                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:36,148                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:36,148                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:36,149                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:36,149                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2023-09-08T19:43:36,150   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:36,150     117 |     struct unary_function
2023-09-08T19:43:36,151         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:41,800   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:56,
2023-09-08T19:43:41,801                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2023-09-08T19:43:41,801   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:41,802      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:41,803         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:41,804   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:41,804                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:41,805                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:41,806                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:41,806                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:41,807                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:41,808                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2023-09-08T19:43:41,808   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:41,809     117 |     struct unary_function
2023-09-08T19:43:41,810         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:47,074   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:47,075                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:47,075                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:47,076                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:47,077                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:47,077                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:47,078                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2023-09-08T19:43:47,079   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:47,080      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:47,080         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:47,081   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:47,081                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:47,082                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:47,082                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:47,083                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:47,083                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:47,084                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2023-09-08T19:43:47,084   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:47,085     117 |     struct unary_function
2023-09-08T19:43:47,085         |            ^~~~~~~~~~~~~~
2023-09-08T19:43:54,350   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:43:54,351                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:43:54,351                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:43:54,352                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:43:54,352                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:43:54,353                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:43:54,354                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2023-09-08T19:43:54,354   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:43:54,355      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:43:54,356         |                           ^~~~~~~~~~~~~~
2023-09-08T19:43:54,357   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:43:54,357                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:43:54,358                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:43:54,358                    from /usr/include/c++/12/ios:42,
2023-09-08T19:43:54,359                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:43:54,360                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:43:54,360                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2023-09-08T19:43:54,361   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:43:54,362     117 |     struct unary_function
2023-09-08T19:43:54,362         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:01,625   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:01,626                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:01,626                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:01,627                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:44:01,628                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:44:01,628                    from ./base//sbml/packages/comp/extension/CompExtension.h:43,
2023-09-08T19:44:01,629                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2023-09-08T19:44:01,630   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:01,630      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:01,631         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:01,632   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:01,633                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:44:01,633                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:44:01,634                    from /usr/include/c++/12/ios:42,
2023-09-08T19:44:01,634                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:44:01,635                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:44:01,635                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2023-09-08T19:44:01,636   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:01,636     117 |     struct unary_function
2023-09-08T19:44:01,637         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:03,830   ./base/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual int SBaseRef::performDeletion()’:
2023-09-08T19:44:03,831   ./base/sbml/packages/comp/sbml/SBaseRef.cpp:987:29: warning: ‘removed’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:44:03,832     987 |   int ret = collectDeletions(removed, &toremove);
2023-09-08T19:44:03,832         |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T19:44:03,833   ./base/sbml/packages/comp/sbml/SBaseRef.cpp:974:16: note: ‘removed’ was declared here
2023-09-08T19:44:03,834     974 |   set<SBase*>* removed;
2023-09-08T19:44:03,834         |                ^~~~~~~
2023-09-08T19:44:10,643   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:44:10,644                    from ./base//sbml/RateRule.h:136,
2023-09-08T19:44:10,645                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2023-09-08T19:44:10,646   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:10,646      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:10,647         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:10,648   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:10,648                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:44:10,649                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:44:10,649                    from /usr/include/c++/12/ios:42,
2023-09-08T19:44:10,650                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:44:10,651                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:44:10,652                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2023-09-08T19:44:10,652   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:10,653     117 |     struct unary_function
2023-09-08T19:44:10,654         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:23,894   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:23,895                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:23,896                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:23,897                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:44:23,897                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:63,
2023-09-08T19:44:23,898                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:34,
2023-09-08T19:44:23,899                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2023-09-08T19:44:23,899   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:23,900      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:23,901         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:23,901   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:23,902                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:44:23,903                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:44:23,904                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:33:
2023-09-08T19:44:23,904   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:23,905     117 |     struct unary_function
2023-09-08T19:44:23,905         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:24,492   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:44:24,492   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:120:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:44:24,493     120 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T19:44:24,494         |              ^
2023-09-08T19:44:24,494   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:118:54: note: ‘props’ declared here
2023-09-08T19:44:24,495     118 |                         (const ConversionProperties &props) const
2023-09-08T19:44:24,496         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:44:25,426   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:120:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:25,426     120 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T19:44:25,427         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:44:32,861   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:32,861                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:32,861                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:32,862                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2023-09-08T19:44:32,863   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:32,863      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:32,864         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:32,865   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:32,865                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2023-09-08T19:44:32,866                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2023-09-08T19:44:32,866   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:32,867     117 |     struct unary_function
2023-09-08T19:44:32,868         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:33,247   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T19:44:33,247   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:33,248      54 |   if (&orig == NULL)
2023-09-08T19:44:33,249         |             ^
2023-09-08T19:44:33,249   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2023-09-08T19:44:33,250      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2023-09-08T19:44:33,251         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:33,252   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2023-09-08T19:44:33,253   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:33,253      80 |   if (&rhs == NULL)
2023-09-08T19:44:33,254         |            ^
2023-09-08T19:44:33,255   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2023-09-08T19:44:33,255      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2023-09-08T19:44:33,256         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:33,801   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:33,802      80 |   if (&rhs == NULL)
2023-09-08T19:44:33,802         |   ^~
2023-09-08T19:44:33,811   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T19:44:33,812   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:33,812      54 |   if (&orig == NULL)
2023-09-08T19:44:33,813         |   ^~
2023-09-08T19:44:38,053   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:38,054                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:38,055                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:38,055                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2023-09-08T19:44:38,056   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:38,056      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:38,057         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:38,057   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:38,058                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2023-09-08T19:44:38,059                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2023-09-08T19:44:38,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:38,060     117 |     struct unary_function
2023-09-08T19:44:38,060         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:38,346   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T19:44:38,347   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:38,348      50 |   if (&orig == NULL)
2023-09-08T19:44:38,348         |             ^
2023-09-08T19:44:38,349   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2023-09-08T19:44:38,350      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2023-09-08T19:44:38,350         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:38,351   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T19:44:38,352   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:38,352      76 |   if (&rhs == NULL)
2023-09-08T19:44:38,353         |            ^
2023-09-08T19:44:38,354   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2023-09-08T19:44:38,354      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2023-09-08T19:44:38,355         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:38,819   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T19:44:38,820   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:38,821      50 |   if (&orig == NULL)
2023-09-08T19:44:38,821         |   ^~
2023-09-08T19:44:38,822   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T19:44:38,823   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:38,824      76 |   if (&rhs == NULL)
2023-09-08T19:44:38,825         |   ^~
2023-09-08T19:44:42,061   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:42,062                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:42,062                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:42,063                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2023-09-08T19:44:42,064   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:42,064      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:42,065         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:42,065   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T19:44:42,066                    from /usr/include/c++/12/vector:66,
2023-09-08T19:44:42,066                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2023-09-08T19:44:42,067   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:42,067     117 |     struct unary_function
2023-09-08T19:44:42,068         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:46,390   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:44:46,390                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:44:46,391                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:44:46,391                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2023-09-08T19:44:46,392   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:46,393      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:46,393         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:46,394   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:46,394                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2023-09-08T19:44:46,395                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2023-09-08T19:44:46,396   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:46,396     117 |     struct unary_function
2023-09-08T19:44:46,397         |            ^~~~~~~~~~~~~~
2023-09-08T19:44:46,701   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T19:44:46,701   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:44:46,702      53 |   if (&orig == NULL)
2023-09-08T19:44:46,703         |             ^
2023-09-08T19:44:46,704   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2023-09-08T19:44:46,704      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2023-09-08T19:44:46,705         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:44:46,707   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T19:44:46,708   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:44:46,709      83 |   if (&rhs == NULL)
2023-09-08T19:44:46,710         |            ^
2023-09-08T19:44:46,711   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2023-09-08T19:44:46,712      81 | SBMLUri::operator=(const SBMLUri& rhs)
2023-09-08T19:44:46,713         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T19:44:46,726   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2023-09-08T19:44:46,727   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T19:44:46,727     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2023-09-08T19:44:46,728         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:44:46,729   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T19:44:46,729    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T19:44:46,730         |     ^~~~~~~
2023-09-08T19:44:46,737   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T19:44:46,737     181 |      ptr_fun<int,int>(tolower)); // host is icase
2023-09-08T19:44:46,738         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T19:44:46,738   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T19:44:46,739    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T19:44:46,739         |     ^~~~~~~
2023-09-08T19:44:47,291   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T19:44:47,292   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:47,292      53 |   if (&orig == NULL)
2023-09-08T19:44:47,293         |   ^~
2023-09-08T19:44:47,294   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T19:44:47,294   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:44:47,295      83 |   if (&rhs == NULL)
2023-09-08T19:44:47,296         |   ^~
2023-09-08T19:44:51,771   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:44:51,771                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:44:51,772                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:44:51,773                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2023-09-08T19:44:51,773                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2023-09-08T19:44:51,774   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:44:51,775      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:44:51,776         |                           ^~~~~~~~~~~~~~
2023-09-08T19:44:51,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:44:51,777                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:44:51,778                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2023-09-08T19:44:51,778                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2023-09-08T19:44:51,779   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:44:51,780     117 |     struct unary_function
2023-09-08T19:44:51,781         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:08,069   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:08,069                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:08,070                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:08,071                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2023-09-08T19:45:08,072                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2023-09-08T19:45:08,072   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:08,073      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:08,074         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:08,075   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:08,075                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:45:08,076                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2023-09-08T19:45:08,076                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2023-09-08T19:45:08,077   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:08,078     117 |     struct unary_function
2023-09-08T19:45:08,078         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:12,351   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:12,352                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:12,353                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:12,353                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2023-09-08T19:45:12,354                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2023-09-08T19:45:12,354   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:12,355      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:12,356         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:12,356   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:12,357                    from ./base//sbml/packages/comp/validator/CompValidator.h:63,
2023-09-08T19:45:12,357                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2023-09-08T19:45:12,358                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2023-09-08T19:45:12,359   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:12,359     117 |     struct unary_function
2023-09-08T19:45:12,360         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:16,704   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:16,705                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:16,706                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:16,706                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2023-09-08T19:45:16,707   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:16,708      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:16,708         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:16,709   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:45:16,710                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2023-09-08T19:45:16,711   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:16,711     117 |     struct unary_function
2023-09-08T19:45:16,712         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:17,549   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:17,550      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:45:17,551         |                       ^~~~~~~~~~~~~~
2023-09-08T19:45:17,552   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:17,554     117 |     struct unary_function
2023-09-08T19:45:17,555         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:17,775   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:45:17,776   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:45:17,777     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T19:45:17,777         |            ^
2023-09-08T19:45:17,778   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2023-09-08T19:45:17,778     325 |   virtual bool visit (const SBase &x)
2023-09-08T19:45:17,779         |                       ~~~~~~~~~~~~~^
2023-09-08T19:45:17,798   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T19:45:17,799   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:45:17,799     481 |   if (&d == NULL) return 0;
2023-09-08T19:45:17,800         |          ^
2023-09-08T19:45:17,801   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2023-09-08T19:45:17,801     479 | CompValidator::validate (const SBMLDocument& d)
2023-09-08T19:45:17,802         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:45:17,817   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T19:45:17,818   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:45:17,818     610 |   if (&filename == NULL) return 0;
2023-09-08T19:45:17,819         |                 ^
2023-09-08T19:45:17,820   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2023-09-08T19:45:17,820     608 | CompValidator::validate (const std::string& filename)
2023-09-08T19:45:17,821         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:45:18,773   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:45:18,774   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:18,774     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T19:45:18,775         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:45:18,795   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T19:45:18,796   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:18,797     481 |   if (&d == NULL) return 0;
2023-09-08T19:45:18,797         |   ^~
2023-09-08T19:45:18,830   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T19:45:18,831   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:45:18,832     610 |   if (&filename == NULL) return 0;
2023-09-08T19:45:18,833         |   ^~
2023-09-08T19:45:24,221   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:45:24,222                    from ./base//sbml/Model.h:409,
2023-09-08T19:45:24,223                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2023-09-08T19:45:24,223   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:24,224      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:24,224         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:24,225   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:24,225                    from ./base//sbml/Model.h:407:
2023-09-08T19:45:24,226   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:24,226     117 |     struct unary_function
2023-09-08T19:45:24,227         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:28,937   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:28,937                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:28,938                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:28,939                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2023-09-08T19:45:28,939   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:28,940      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:28,941         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:28,941   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:28,942                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:28,942   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:28,943     117 |     struct unary_function
2023-09-08T19:45:28,943         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:33,929   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:33,929                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:33,930                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:33,930                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T19:45:33,931                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2023-09-08T19:45:33,932   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:33,932      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:33,933         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:33,933   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:33,934                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2023-09-08T19:45:33,934   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:33,935     117 |     struct unary_function
2023-09-08T19:45:33,936         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:38,545   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:38,546                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:38,547                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:38,548                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2023-09-08T19:45:38,548   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:38,549      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:38,550         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:38,550   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:38,551                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:38,552   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:38,553     117 |     struct unary_function
2023-09-08T19:45:38,553         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:42,761   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:45:42,761                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:45:42,762                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:45:42,763                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2023-09-08T19:45:42,764   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:42,764      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:42,765         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:42,765   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:42,766                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:45:42,766   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:42,767     117 |     struct unary_function
2023-09-08T19:45:42,767         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:47,140   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:45:47,141                    from ./base//sbml/Model.h:409,
2023-09-08T19:45:47,141                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2023-09-08T19:45:47,142   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:47,142      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:47,143         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:47,143   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:47,144                    from ./base//sbml/Model.h:407:
2023-09-08T19:45:47,145   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:47,145     117 |     struct unary_function
2023-09-08T19:45:47,146         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:55,088   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:45:55,088                    from ./base//sbml/Model.h:409,
2023-09-08T19:45:55,089                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2023-09-08T19:45:55,090   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:55,091      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:55,092         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:55,092   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:55,093                    from ./base//sbml/Model.h:407:
2023-09-08T19:45:55,094   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:55,095     117 |     struct unary_function
2023-09-08T19:45:55,095         |            ^~~~~~~~~~~~~~
2023-09-08T19:45:59,923   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:45:59,924                    from ./base//sbml/Model.h:409,
2023-09-08T19:45:59,924                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2023-09-08T19:45:59,925   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:45:59,926      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:45:59,926         |                           ^~~~~~~~~~~~~~
2023-09-08T19:45:59,927   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:45:59,928                    from ./base//sbml/Model.h:407:
2023-09-08T19:45:59,929   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:45:59,929     117 |     struct unary_function
2023-09-08T19:45:59,930         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:07,892   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:46:07,892                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:46:07,893                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:46:07,894                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T19:46:07,894                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2023-09-08T19:46:07,895                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2023-09-08T19:46:07,895   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:07,896      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:07,896         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:07,897   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:07,897                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:46:07,898                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:46:07,898                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:46:07,899                    from ./base//sbml/SBase.h:154,
2023-09-08T19:46:07,900                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2023-09-08T19:46:07,900   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:07,901     117 |     struct unary_function
2023-09-08T19:46:07,901         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:13,395   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:13,396                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:13,396                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2023-09-08T19:46:13,397   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:13,398      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:13,398         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:13,399   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:13,400                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:13,401   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:13,401     117 |     struct unary_function
2023-09-08T19:46:13,402         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:17,888   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:17,889                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:17,890                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2023-09-08T19:46:17,890   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:17,891      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:17,892         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:17,892   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:17,893                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:17,894   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:17,894     117 |     struct unary_function
2023-09-08T19:46:17,895         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:22,515   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:22,516                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:22,517                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2023-09-08T19:46:22,517   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:22,518      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:22,518         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:22,520   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:22,520                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:22,521   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:22,521     117 |     struct unary_function
2023-09-08T19:46:22,522         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:26,884   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:26,884                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:26,885                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2023-09-08T19:46:26,885   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:26,886      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:26,887         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:26,887   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:26,888                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:26,888   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:26,889     117 |     struct unary_function
2023-09-08T19:46:26,889         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:31,406   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:31,407                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:31,408                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2023-09-08T19:46:31,408   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:31,409      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:31,409         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:31,410   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:31,411                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:31,411   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:31,412     117 |     struct unary_function
2023-09-08T19:46:31,412         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:36,133   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:36,134                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:36,134                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2023-09-08T19:46:36,135   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:36,136      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:36,136         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:36,137   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:36,138                    from ./base//sbml/Model.h:407:
2023-09-08T19:46:36,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:36,139     117 |     struct unary_function
2023-09-08T19:46:36,140         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:41,780   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:41,781                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:46:41,781                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:46:41,782                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:46:41,783                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:46:41,783                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:46:41,784                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2023-09-08T19:46:41,784   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:41,785      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:41,786         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:41,786   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:41,787                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:41,787                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:46:41,788                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:46:41,788   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:41,789     117 |     struct unary_function
2023-09-08T19:46:41,789         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:42,208   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:42,208                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:46:42,209                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2023-09-08T19:46:42,209   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:42,210     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:42,211         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:42,211   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:42,212     117 |     struct unary_function
2023-09-08T19:46:42,213         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:42,218   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:42,219     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:42,220         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:42,220   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:42,221     117 |     struct unary_function
2023-09-08T19:46:42,222         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:42,239   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:46:42,240   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:42,240     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:42,241         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:42,242   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:42,242     117 |     struct unary_function
2023-09-08T19:46:42,243         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:47,264   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:47,264                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:47,265                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:43,
2023-09-08T19:46:47,266                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2023-09-08T19:46:47,266   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:47,267      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:47,268         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:47,269   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:47,269                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:47,270                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:46:47,271                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42:
2023-09-08T19:46:47,272   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:47,272     117 |     struct unary_function
2023-09-08T19:46:47,273         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:47,731   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:47,732                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T19:46:47,732   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:47,733     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:47,733         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:47,734   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:47,734     117 |     struct unary_function
2023-09-08T19:46:47,735         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:47,741   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:47,742     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:47,743         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:47,743   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:47,744     117 |     struct unary_function
2023-09-08T19:46:47,744         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:47,762   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:46:47,763   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:47,764     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:47,764         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:47,765   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:47,765     117 |     struct unary_function
2023-09-08T19:46:47,766         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:53,740   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:53,740                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:46:53,741                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:46:53,742                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:46:53,743                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:49,
2023-09-08T19:46:53,743                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2023-09-08T19:46:53,744   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:53,744      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:53,745         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:53,746   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:53,746                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:46:53,747                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:46:53,748                    from /usr/include/c++/12/ios:42,
2023-09-08T19:46:53,748                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:46:53,749                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2023-09-08T19:46:53,749   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:53,750     117 |     struct unary_function
2023-09-08T19:46:53,751         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:58,053   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:46:58,053                    from ./base//sbml/Model.h:409,
2023-09-08T19:46:58,054                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:45,
2023-09-08T19:46:58,055                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2023-09-08T19:46:58,055   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:58,056      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:46:58,056         |                           ^~~~~~~~~~~~~~
2023-09-08T19:46:58,057   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:46:58,057                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:46:58,058                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:46:58,058                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44:
2023-09-08T19:46:58,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:58,059     117 |     struct unary_function
2023-09-08T19:46:58,060         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:58,517   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:46:58,518                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2023-09-08T19:46:58,519   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:58,519     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:58,520         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:46:58,520   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:58,521     117 |     struct unary_function
2023-09-08T19:46:58,522         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:58,527   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:58,528     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:58,528         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:46:58,529   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:58,530     117 |     struct unary_function
2023-09-08T19:46:58,530         |            ^~~~~~~~~~~~~~
2023-09-08T19:46:58,547   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:51:
2023-09-08T19:46:58,548   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:46:58,548     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:46:58,549         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:46:58,550   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:46:58,550     117 |     struct unary_function
2023-09-08T19:46:58,551         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:04,262   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2023-09-08T19:47:04,262                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2023-09-08T19:47:04,263   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:04,264      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:04,264         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:04,265   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:04,266                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:04,267                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:04,268                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:04,268                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:04,269                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:04,269                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2023-09-08T19:47:04,270   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:04,270     117 |     struct unary_function
2023-09-08T19:47:04,271         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:12,352   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2023-09-08T19:47:12,353                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2023-09-08T19:47:12,354   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:12,354      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:12,355         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:12,355   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:12,356                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:12,357                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:12,357                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:12,358                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:12,358                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:12,359                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2023-09-08T19:47:12,360   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:12,360     117 |     struct unary_function
2023-09-08T19:47:12,361         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:20,049   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:47,
2023-09-08T19:47:20,050                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2023-09-08T19:47:20,051   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:20,052      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:20,052         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:20,053   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:20,054                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:20,054                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:20,055                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:20,056                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:20,057                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:20,057                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2023-09-08T19:47:20,058   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:20,058     117 |     struct unary_function
2023-09-08T19:47:20,059         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:20,688   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:20,689     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:20,689         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:20,690   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:20,691     117 |     struct unary_function
2023-09-08T19:47:20,692         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:27,217   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:47,
2023-09-08T19:47:27,218                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2023-09-08T19:47:27,218   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:27,219      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:27,220         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:27,220   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:27,221                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:27,221                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:27,222                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:27,222                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:27,223                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:27,224                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2023-09-08T19:47:27,224   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:27,225     117 |     struct unary_function
2023-09-08T19:47:27,225         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:27,875   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:27,876     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:27,877         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:27,877   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:27,878     117 |     struct unary_function
2023-09-08T19:47:27,879         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:34,186   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2023-09-08T19:47:34,186                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2023-09-08T19:47:34,187   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:34,187      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:34,188         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:34,188   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:34,189                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:47:34,190                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:47:34,190                    from /usr/include/c++/12/ios:42,
2023-09-08T19:47:34,191                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:47:34,192                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:47:34,192                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2023-09-08T19:47:34,193   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:34,193     117 |     struct unary_function
2023-09-08T19:47:34,194         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:34,834   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2023-09-08T19:47:34,834   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:34,835     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:34,836         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:34,837   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:34,837     117 |     struct unary_function
2023-09-08T19:47:34,838         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:34,843   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:34,844     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:34,845         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:34,846   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:34,846     117 |     struct unary_function
2023-09-08T19:47:34,847         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,456   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:47:42,456                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:47:42,457                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:47:42,457                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:47:42,458                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:47:42,459                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:36,
2023-09-08T19:47:42,459                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2023-09-08T19:47:42,460   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:42,461      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:42,461         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:42,462   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:42,462                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:47:42,463                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:47:42,463                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35:
2023-09-08T19:47:42,464   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:42,464     117 |     struct unary_function
2023-09-08T19:47:42,465         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,839   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:42,840                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:47:42,841                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:47:42,841                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2023-09-08T19:47:42,842   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:42,843     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:42,843         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:42,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:42,845     117 |     struct unary_function
2023-09-08T19:47:42,845         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,853   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:42,853     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:42,854         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:42,855   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:42,855     117 |     struct unary_function
2023-09-08T19:47:42,856         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,875   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:47:42,876   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:42,876     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:42,877         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,878   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:42,879     117 |     struct unary_function
2023-09-08T19:47:42,880         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:42,889   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:47:42,890   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:97:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:47:42,891      97 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T19:47:42,891         |              ^
2023-09-08T19:47:42,892   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:95:70: note: ‘props’ declared here
2023-09-08T19:47:42,893      95 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:47:42,893         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:47:43,746   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:97:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:47:43,747      97 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T19:47:43,747         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:47:50,211   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:47:50,212                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:47:50,212                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:47:50,213                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:47:50,213                    from ./base//sbml/conversion/SBMLConverter.h:70,
2023-09-08T19:47:50,214                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:36,
2023-09-08T19:47:50,215                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2023-09-08T19:47:50,215   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:50,216      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:50,216         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:50,217   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:50,218                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:47:50,219                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:47:50,219                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35:
2023-09-08T19:47:50,220   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:50,221     117 |     struct unary_function
2023-09-08T19:47:50,221         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:50,590   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:50,591                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:47:50,592                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:47:50,593                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2023-09-08T19:47:50,594   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:50,594     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:50,595         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:50,595   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:50,596     117 |     struct unary_function
2023-09-08T19:47:50,597         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:50,601   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:50,602     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:50,603         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:50,604   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:50,604     117 |     struct unary_function
2023-09-08T19:47:50,605         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:50,622   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:47:50,622   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:50,623     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:50,624         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:47:50,624   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:50,625     117 |     struct unary_function
2023-09-08T19:47:50,625         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:50,634   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T19:47:50,635   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T19:47:50,636      98 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T19:47:50,636         |              ^
2023-09-08T19:47:50,637   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:96:70: note: ‘props’ declared here
2023-09-08T19:47:50,637      96 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T19:47:50,638         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T19:47:51,461   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:47:51,462      98 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T19:47:51,463         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:47:56,936   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:47:56,936                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:47:56,937                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:47:56,938                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2023-09-08T19:47:56,939                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2023-09-08T19:47:56,939   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:56,940      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:47:56,941         |                           ^~~~~~~~~~~~~~
2023-09-08T19:47:56,941   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:47:56,942                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2023-09-08T19:47:56,943                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2023-09-08T19:47:56,944                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2023-09-08T19:47:56,944   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:56,945     117 |     struct unary_function
2023-09-08T19:47:56,946         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:57,612   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:47:57,613                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T19:47:57,613   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:57,614     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:57,615         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:47:57,616   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:57,616     117 |     struct unary_function
2023-09-08T19:47:57,617         |            ^~~~~~~~~~~~~~
2023-09-08T19:47:57,622   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:47:57,623     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:47:57,623         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:47:57,624   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:47:57,624     117 |     struct unary_function
2023-09-08T19:47:57,625         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:01,545   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:48:01,546                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:01,546                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:01,547                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2023-09-08T19:48:01,547                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2023-09-08T19:48:01,548   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:01,549      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:01,549         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:01,550   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:01,551                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:63,
2023-09-08T19:48:01,551                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2023-09-08T19:48:01,552                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2023-09-08T19:48:01,553   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:01,553     117 |     struct unary_function
2023-09-08T19:48:01,554         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:05,462   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:48:05,462                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:05,463                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:05,464                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2023-09-08T19:48:05,464   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:05,465      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:05,466         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:05,466   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:48:05,467                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2023-09-08T19:48:05,468   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:05,468     117 |     struct unary_function
2023-09-08T19:48:05,469         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,147   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:06,148                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:06,149                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T19:48:06,150                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2023-09-08T19:48:06,151   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:06,151     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:06,152         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:06,152   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:06,153     117 |     struct unary_function
2023-09-08T19:48:06,154         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,159   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:06,160     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:06,160         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:06,161   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:06,162     117 |     struct unary_function
2023-09-08T19:48:06,162         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,180   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:06,181   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:06,181     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:06,182         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,183   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:06,183     117 |     struct unary_function
2023-09-08T19:48:06,184         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,189   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:06,190      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:48:06,191         |                       ^~~~~~~~~~~~~~
2023-09-08T19:48:06,192   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:06,192     117 |     struct unary_function
2023-09-08T19:48:06,193         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:06,358   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:48:06,358   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:48:06,359     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T19:48:06,360         |            ^
2023-09-08T19:48:06,360   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2023-09-08T19:48:06,361     288 |   virtual bool visit (const SBase &x)
2023-09-08T19:48:06,362         |                       ~~~~~~~~~~~~~^
2023-09-08T19:48:06,375   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T19:48:06,376   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:48:06,377     383 |   if (&d == NULL) return 0;
2023-09-08T19:48:06,377         |          ^
2023-09-08T19:48:06,378   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2023-09-08T19:48:06,379     381 | FbcValidator::validate (const SBMLDocument& d)
2023-09-08T19:48:06,380         |                         ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:48:06,380   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T19:48:06,381   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:48:06,382     413 |   if (&filename == NULL) return 0;
2023-09-08T19:48:06,383         |                 ^
2023-09-08T19:48:06,383   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2023-09-08T19:48:06,384     411 | FbcValidator::validate (const std::string& filename)
2023-09-08T19:48:06,384         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:48:07,238   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T19:48:07,239   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:07,239     383 |   if (&d == NULL) return 0;
2023-09-08T19:48:07,240         |   ^~
2023-09-08T19:48:07,250   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:48:07,252   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:07,252     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T19:48:07,253         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:48:07,263   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T19:48:07,264   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:48:07,265     413 |   if (&filename == NULL) return 0;
2023-09-08T19:48:07,266         |   ^~
2023-09-08T19:48:11,316   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:48:11,317                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:11,317                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:11,318                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2023-09-08T19:48:11,319   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:11,320      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:11,320         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:11,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:11,321                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:48:11,322   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:11,323     117 |     struct unary_function
2023-09-08T19:48:11,323         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:11,990   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:11,991                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T19:48:11,992   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:11,992     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:11,993         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:11,994   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:11,994     117 |     struct unary_function
2023-09-08T19:48:11,995         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:12,000   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:12,001     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:12,002         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:12,003   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:12,003     117 |     struct unary_function
2023-09-08T19:48:12,004         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:15,288   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:48:15,288                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:15,289                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:15,289                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2023-09-08T19:48:15,290   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:15,290      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:15,291         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:15,291   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:15,292                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:48:15,292   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:15,293     117 |     struct unary_function
2023-09-08T19:48:15,293         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:19,298   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:19,298                    from ./base//sbml/Model.h:409,
2023-09-08T19:48:19,299                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2023-09-08T19:48:19,300   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:19,300      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:19,301         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:19,302   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:19,302                    from ./base//sbml/Model.h:407:
2023-09-08T19:48:19,303   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:19,304     117 |     struct unary_function
2023-09-08T19:48:19,305         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:19,830   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:19,831                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:19,832                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2023-09-08T19:48:19,832   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:19,833     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:19,834         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:19,834   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:19,835     117 |     struct unary_function
2023-09-08T19:48:19,836         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:19,841   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:19,842     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:19,843         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:19,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:19,845     117 |     struct unary_function
2023-09-08T19:48:19,845         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:19,862   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:19,863   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:19,863     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:19,864         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:19,865   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:19,865     117 |     struct unary_function
2023-09-08T19:48:19,866         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:23,732   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:48:23,733                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:48:23,733                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:48:23,733                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2023-09-08T19:48:23,734                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2023-09-08T19:48:23,735   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:23,735      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:23,736         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:23,736   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:23,737                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2023-09-08T19:48:23,737   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:23,738     117 |     struct unary_function
2023-09-08T19:48:23,738         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:24,320   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T19:48:24,321                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48,
2023-09-08T19:48:24,322                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2023-09-08T19:48:24,322   ./base//sbml/packages/fbc/sbml/FluxObjective.h:552:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:24,323     552 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:24,323         |                                          ^~~~~~~~~~~~~~
2023-09-08T19:48:24,324   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:24,325     117 |     struct unary_function
2023-09-08T19:48:24,326         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:24,333   ./base//sbml/packages/fbc/sbml/Objective.h:832:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:24,333     832 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:24,334         |                                      ^~~~~~~~~~~~~~
2023-09-08T19:48:24,335   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:24,335     117 |     struct unary_function
2023-09-08T19:48:24,336         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:24,355   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:49:
2023-09-08T19:48:24,355   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:522:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:24,356     522 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T19:48:24,357         |                                            ^~~~~~~~~~~~~~
2023-09-08T19:48:24,357   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:24,358     117 |     struct unary_function
2023-09-08T19:48:24,359         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:29,492   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:29,492                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:29,493                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:29,493                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:29,494                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:29,494                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:48:29,495                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2023-09-08T19:48:29,495   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:29,496      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:29,496         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:29,497   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:29,497                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:29,498                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:48:29,498                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:48:29,499   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:29,499     117 |     struct unary_function
2023-09-08T19:48:29,500         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:35,331   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:35,331                    from ./base//sbml/Model.h:409,
2023-09-08T19:48:35,332                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:50,
2023-09-08T19:48:35,333                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2023-09-08T19:48:35,333   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:35,334      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:35,334         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:35,335   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:35,335                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:35,336                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:35,337                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49:
2023-09-08T19:48:35,337   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:35,338     117 |     struct unary_function
2023-09-08T19:48:35,339         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:40,505   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:40,505                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:40,506                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:40,507                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:48:40,507                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:59,
2023-09-08T19:48:40,508                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2023-09-08T19:48:40,509   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:40,509      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:40,510         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:40,511   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:40,511                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:40,512                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:40,513                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:48:40,514   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:40,514     117 |     struct unary_function
2023-09-08T19:48:40,515         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:45,350   In file included from ./base//sbml/SpeciesReference.h:286,
2023-09-08T19:48:45,351                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:46,
2023-09-08T19:48:45,352                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2023-09-08T19:48:45,352   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:45,353      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:45,354         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:45,354   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:45,355                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:48:45,356                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:48:45,356                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45:
2023-09-08T19:48:45,357   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:45,357     117 |     struct unary_function
2023-09-08T19:48:45,358         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:49,944   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:49,944                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:49,945                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:49,945                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:49,946                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:49,947                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:48:49,947                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:48:49,948                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:48:49,948                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2023-09-08T19:48:49,949   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:49,950      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:49,950         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:49,951   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:49,952                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2023-09-08T19:48:49,952   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:49,953     117 |     struct unary_function
2023-09-08T19:48:49,954         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:56,516   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:48:56,516                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:48:56,517                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:48:56,518                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:48:56,518                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:48:56,519                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:48:56,520                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:48:56,520                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:48:56,521                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:48:56,522                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2023-09-08T19:48:56,523                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2023-09-08T19:48:56,523   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:48:56,524      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:48:56,524         |                           ^~~~~~~~~~~~~~
2023-09-08T19:48:56,525   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:48:56,525                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2023-09-08T19:48:56,526   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:48:56,526     117 |     struct unary_function
2023-09-08T19:48:56,527         |            ^~~~~~~~~~~~~~
2023-09-08T19:48:58,782   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp: In member function ‘virtual void CompartmentGlyph::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T19:48:58,783   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:481:70: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:48:58,784     481 |                         if (getErrorLog()->getNumErrors() == numErrs + 1 &&
2023-09-08T19:48:58,784         |                                                              ~~~~~~~~^~~
2023-09-08T19:48:58,785   ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:359:22: note: ‘numErrs’ was declared here
2023-09-08T19:48:58,785     359 |         unsigned int numErrs;
2023-09-08T19:48:58,786         |                      ^~~~~~~
2023-09-08T19:49:02,631   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:49:02,632                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:02,632                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:02,633                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:02,634                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:02,634                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:02,635                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:02,635                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2023-09-08T19:49:02,636                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:56,
2023-09-08T19:49:02,637                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2023-09-08T19:49:02,637   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:02,638      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:02,639         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:02,640   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:02,640                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:54:
2023-09-08T19:49:02,641   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:02,641     117 |     struct unary_function
2023-09-08T19:49:02,642         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:07,941   In file included from ./base//sbml/packages/layout/sbml/Curve.h:66,
2023-09-08T19:49:07,942                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2023-09-08T19:49:07,942   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:07,943      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:07,944         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:07,944   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:07,945                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:07,946                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:07,946                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:07,947                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:49:07,947                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:49:07,948                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2023-09-08T19:49:07,948   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:07,949     117 |     struct unary_function
2023-09-08T19:49:07,949         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:14,583   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:49:14,583                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:14,584                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:14,584                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:14,585                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:14,585                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:14,586                    from ./base//sbml/packages/layout/sbml/Dimensions.h:57,
2023-09-08T19:49:14,587                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2023-09-08T19:49:14,587   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:14,588      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:14,588         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:14,589   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:14,589                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:14,590                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:14,591                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:14,591                    from /usr/include/c++/12/istream:38,
2023-09-08T19:49:14,592                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:49:14,593                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2023-09-08T19:49:14,593   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:14,594     117 |     struct unary_function
2023-09-08T19:49:14,595         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:20,532   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:55,
2023-09-08T19:49:20,533                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2023-09-08T19:49:20,534   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:20,534      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:20,535         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:20,536   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:20,536                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:53:
2023-09-08T19:49:20,537   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:20,538     117 |     struct unary_function
2023-09-08T19:49:20,538         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:28,796   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:49:28,797                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:28,798                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:28,798                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:28,799                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:28,800                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:28,801                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:28,801                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:49:28,802                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:49:28,803                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T19:49:28,803                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2023-09-08T19:49:28,804   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:28,804      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:28,805         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:28,805   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:28,806                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:49:28,806                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:49:28,807                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:49:28,808                    from ./base//sbml/SBase.h:154,
2023-09-08T19:49:28,808                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T19:49:28,809   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:28,809     117 |     struct unary_function
2023-09-08T19:49:28,810         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:29,266   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T19:49:29,267   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T19:49:29,268     373 |   if (&id != NULL && id.empty())
2023-09-08T19:49:29,268         |           ^
2023-09-08T19:49:29,269   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2023-09-08T19:49:29,270     371 | int GraphicalObject::setId(const std::string& id)
2023-09-08T19:49:29,270         |                            ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T19:49:29,271   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T19:49:29,272   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T19:49:29,273     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T19:49:29,273         |               ^
2023-09-08T19:49:29,274   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2023-09-08T19:49:29,275     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2023-09-08T19:49:29,275         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T19:49:29,929   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T19:49:29,930   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:29,931     373 |   if (&id != NULL && id.empty())
2023-09-08T19:49:29,931         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2023-09-08T19:49:29,932   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T19:49:29,933   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:29,933     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T19:49:29,934         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-08T19:49:37,936   In file included from ./base//sbml/packages/layout/sbml/Layout.h:58,
2023-09-08T19:49:37,936                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2023-09-08T19:49:37,937   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:37,937      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:37,938         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:37,938   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:37,939                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:37,940                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:37,940                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:37,941                    from /usr/include/c++/12/ostream:38,
2023-09-08T19:49:37,941                    from /usr/include/c++/12/iostream:39,
2023-09-08T19:49:37,942                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2023-09-08T19:49:37,942   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:37,943     117 |     struct unary_function
2023-09-08T19:49:37,943         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:38,772   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2023-09-08T19:49:38,772   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:49:38,773     453 |   if (&(name) == NULL)
2023-09-08T19:49:38,774         |               ^
2023-09-08T19:49:38,774   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2023-09-08T19:49:38,775     448 | int Layout::setName (const std::string& name)
2023-09-08T19:49:38,775         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:49:39,596   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:49:39,596     453 |   if (&(name) == NULL)
2023-09-08T19:49:39,597         |   ^~
2023-09-08T19:49:51,024   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:49:51,025                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:51,025                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:51,026                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:51,026                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:51,027                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:51,028                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:51,029                    from ./base//sbml/packages/layout/sbml/LineSegment.h:55,
2023-09-08T19:49:51,029                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2023-09-08T19:49:51,030   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:51,030      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:51,031         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:51,032   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:51,032                    from ./base//sbml/packages/layout/sbml/LineSegment.h:52:
2023-09-08T19:49:51,033   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:51,034     117 |     struct unary_function
2023-09-08T19:49:51,035         |            ^~~~~~~~~~~~~~
2023-09-08T19:49:57,301   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:49:57,301                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:49:57,302                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:49:57,303                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:49:57,304                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:49:57,304                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:49:57,305                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:49:57,305                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2023-09-08T19:49:57,306   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:49:57,306      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:49:57,307         |                           ^~~~~~~~~~~~~~
2023-09-08T19:49:57,308   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:49:57,308                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T19:49:57,309                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T19:49:57,309                    from /usr/include/c++/12/ios:42,
2023-09-08T19:49:57,310                    from /usr/include/c++/12/istream:38,
2023-09-08T19:49:57,310                    from /usr/include/c++/12/sstream:38,
2023-09-08T19:49:57,311                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2023-09-08T19:49:57,311   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:49:57,312     117 |     struct unary_function
2023-09-08T19:49:57,313         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:03,297   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:61,
2023-09-08T19:50:03,298                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2023-09-08T19:50:03,298   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:03,299      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:03,299         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:03,300   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:03,301                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:59:
2023-09-08T19:50:03,301   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:03,302     117 |     struct unary_function
2023-09-08T19:50:03,303         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:11,075   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:11,076                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:11,076                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:11,077                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:11,077                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:11,078                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:11,079                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:11,079                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:11,080                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:11,081                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:55,
2023-09-08T19:50:11,081                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2023-09-08T19:50:11,082   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:11,083      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:11,084         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:11,084   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:11,085                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:53:
2023-09-08T19:50:11,086   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:11,086     117 |     struct unary_function
2023-09-08T19:50:11,087         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:17,915   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:17,915                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:17,916                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:17,916                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:17,917                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:17,917                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:17,918                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:17,919                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:17,919                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:17,920                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:50,
2023-09-08T19:50:17,920                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2023-09-08T19:50:17,921   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:17,921      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:17,922         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:17,923   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:17,923                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49:
2023-09-08T19:50:17,924   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:17,924     117 |     struct unary_function
2023-09-08T19:50:17,925         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:23,751   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:23,752                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:23,752                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:23,753                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:23,754                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:23,754                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:23,755                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:23,756                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:23,757                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:23,757                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:55,
2023-09-08T19:50:23,758                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2023-09-08T19:50:23,759   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:23,759      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:23,760         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:23,761   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:23,761                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:53:
2023-09-08T19:50:23,762   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:23,763     117 |     struct unary_function
2023-09-08T19:50:23,764         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:30,766   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:30,767                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:30,768                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:30,768                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:30,770                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:30,770                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:30,770                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:30,771                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:30,771                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:30,772                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2023-09-08T19:50:30,772                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2023-09-08T19:50:30,773   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:30,774      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:30,774         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:30,775   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:30,775                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2023-09-08T19:50:30,776   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:30,776     117 |     struct unary_function
2023-09-08T19:50:30,776         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:37,052   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:37,052                    from ./base//sbml/Model.h:409,
2023-09-08T19:50:37,053                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2023-09-08T19:50:37,054   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:37,054      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:37,055         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:37,056   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:37,057                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:50:37,057                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T19:50:37,058                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2023-09-08T19:50:37,059   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:37,059     117 |     struct unary_function
2023-09-08T19:50:37,060         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:41,997   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:50:41,998                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:50:41,999                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:50:41,999                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:50:42,000                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:50:42,000                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:44,
2023-09-08T19:50:42,001                    from ./base//sbml/packages/layout/sbml/Point.h:52,
2023-09-08T19:50:42,002                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T19:50:42,002                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:61,
2023-09-08T19:50:42,003                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T19:50:42,004                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2023-09-08T19:50:42,004   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:42,005      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:42,006         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:42,006   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:42,007                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:50:42,008                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:50:42,008                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:50:42,009                    from ./base//sbml/SBase.h:154,
2023-09-08T19:50:42,010                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T19:50:42,010   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:42,010     117 |     struct unary_function
2023-09-08T19:50:42,011         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:46,080   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:50:46,080                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:46,081                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:46,081                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2023-09-08T19:50:46,082                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2023-09-08T19:50:46,083   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:46,083      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:46,084         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:46,084   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:46,085                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2023-09-08T19:50:46,085                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2023-09-08T19:50:46,086                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2023-09-08T19:50:46,087   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:46,087     117 |     struct unary_function
2023-09-08T19:50:46,088         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:49,262   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintGeneralGlyphLayoutGGNoDuplicateReferences::check_(const Model&, const GeneralGlyph&)’:
2023-09-08T19:50:49,263   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:452:23: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:49,264     452 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:49,264         |       ~~~~~~~~~~~~~~~~^~
2023-09-08T19:50:49,265   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:438:11: note: ‘obj’ was declared here
2023-09-08T19:50:49,266     438 |   SBase * obj;
2023-09-08T19:50:49,266         |           ^~~
2023-09-08T19:50:49,572   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintSpeciesReferenceGlyphLayoutSRGNoDuplicateReferences::check_(const Model&, const SpeciesReferenceGlyph&)’:
2023-09-08T19:50:49,573   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:678:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:49,574     678 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:49,574         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:49,575   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:664:11: note: ‘obj’ was declared here
2023-09-08T19:50:49,576     664 |   SBase * obj;
2023-09-08T19:50:49,577         |           ^~~
2023-09-08T19:50:49,665   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintTextGlyphLayoutTGNoDuplicateReferences::check_(const Model&, const TextGlyph&)’:
2023-09-08T19:50:49,666   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:545:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:49,666     545 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:49,667         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:49,668   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:531:11: note: ‘obj’ was declared here
2023-09-08T19:50:49,668     531 |   SBase * obj;
2023-09-08T19:50:49,669         |           ^~~
2023-09-08T19:50:49,757   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp: In member function ‘virtual void VConstraintReferenceGlyphLayoutREFGNoDuplicateReferences::check_(const Model&, const ReferenceGlyph&)’:
2023-09-08T19:50:49,758   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:807:52: warning: ‘obj’ may be used uninitialized [-Wmaybe-uninitialized]
2023-09-08T19:50:49,758     807 |   if (obj->isSetMetaId() == false || obj->getMetaId() != glyph.getMetaIdRef())
2023-09-08T19:50:49,759         |                                      ~~~~~~~~~~~~~~^~
2023-09-08T19:50:49,760   ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:793:11: note: ‘obj’ was declared here
2023-09-08T19:50:49,760     793 |   SBase * obj;
2023-09-08T19:50:49,761         |           ^~~
2023-09-08T19:50:53,846   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:50:53,847                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:53,848                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:53,848                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2023-09-08T19:50:53,849                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2023-09-08T19:50:53,849   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:53,850      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:53,851         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:53,851   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:53,852                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:67,
2023-09-08T19:50:53,853                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2023-09-08T19:50:53,853                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2023-09-08T19:50:53,854   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:53,855     117 |     struct unary_function
2023-09-08T19:50:53,855         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:57,723   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:50:57,723                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:50:57,724                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:50:57,725                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2023-09-08T19:50:57,725   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:57,726      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:50:57,727         |                           ^~~~~~~~~~~~~~
2023-09-08T19:50:57,728   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:50:57,728                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:50:57,729   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:57,730     117 |     struct unary_function
2023-09-08T19:50:57,731         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:58,465   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:50:58,466      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:50:58,467         |                       ^~~~~~~~~~~~~~
2023-09-08T19:50:58,467   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:50:58,468     117 |     struct unary_function
2023-09-08T19:50:58,468         |            ^~~~~~~~~~~~~~
2023-09-08T19:50:58,777   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:50:58,777   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:50:58,778     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T19:50:58,779         |                        ^
2023-09-08T19:50:58,779   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2023-09-08T19:50:58,780     417 |         virtual bool visit(const SBase &x)
2023-09-08T19:50:58,781         |                            ~~~~~~~~~~~~~^
2023-09-08T19:50:58,806   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T19:50:58,807   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:50:58,807     550 |   if (&d == NULL) return 0;
2023-09-08T19:50:58,808         |          ^
2023-09-08T19:50:58,809   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2023-09-08T19:50:58,810     548 | LayoutValidator::validate (const SBMLDocument& d)
2023-09-08T19:50:58,811         |                            ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:50:58,811   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T19:50:58,812   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:50:58,813     592 |   if (&filename == NULL) return 0;
2023-09-08T19:50:58,813         |                 ^
2023-09-08T19:50:58,814   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2023-09-08T19:50:58,815     590 | LayoutValidator::validate (const std::string& filename)
2023-09-08T19:50:58,815         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:50:59,981   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T19:50:59,982   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:50:59,982     550 |   if (&d == NULL) return 0;
2023-09-08T19:50:59,983         |   ^~
2023-09-08T19:51:00,009   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:51:00,010   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:00,011     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T19:51:00,011         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:51:00,032   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T19:51:00,033   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:00,034     592 |   if (&filename == NULL) return 0;
2023-09-08T19:51:00,035         |   ^~
2023-09-08T19:51:05,124   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:51:05,125                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:05,125                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:05,126                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2023-09-08T19:51:05,126   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:05,127      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:05,127         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:05,128   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:05,129                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:51:05,129   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:05,130     117 |     struct unary_function
2023-09-08T19:51:05,130         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:09,374   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:51:09,375                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:09,375                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:09,376                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2023-09-08T19:51:09,377   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:09,377      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:09,378         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:09,379   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:09,379                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:51:09,380   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:09,381     117 |     struct unary_function
2023-09-08T19:51:09,381         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:13,290   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:51:13,291                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:51:13,291                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:51:13,292                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2023-09-08T19:51:13,292                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2023-09-08T19:51:13,293   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:13,294      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:13,294         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:13,295   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:13,296                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2023-09-08T19:51:13,296   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:13,297     117 |     struct unary_function
2023-09-08T19:51:13,297         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:19,164   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:51:19,164                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:19,165                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:19,166                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T19:51:19,166                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T19:51:19,167                    from ./base//sbml/extension/SBMLExtensionRegister.h:43,
2023-09-08T19:51:19,167                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2023-09-08T19:51:19,168   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:19,168      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:19,169         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:19,169   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:19,170                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:19,171                    from ./base//sbml/SBMLError.h:447,
2023-09-08T19:51:19,171                    from ./base//sbml/SBMLDocument.h:289:
2023-09-08T19:51:19,172   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:19,172     117 |     struct unary_function
2023-09-08T19:51:19,173         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:24,462   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:51:24,463                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:24,463                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:24,464                    from ./base//sbml/extension/SBasePlugin.h:254,
2023-09-08T19:51:24,464                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:53,
2023-09-08T19:51:24,465                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2023-09-08T19:51:24,465   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:24,466      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:24,466         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:24,467   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:24,468                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:24,468                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:51:24,469                    from ./base//sbml/extension/SBasePlugin.h:252:
2023-09-08T19:51:24,469   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:24,470     117 |     struct unary_function
2023-09-08T19:51:24,470         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:29,577   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:51:29,578                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:51:29,578                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:51:29,579                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53,
2023-09-08T19:51:29,580                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:59,
2023-09-08T19:51:29,580                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2023-09-08T19:51:29,581   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:29,581      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:29,582         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:29,583   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:29,584                    from ./base//sbml/xml/XMLError.h:556,
2023-09-08T19:51:29,584                    from ./base//sbml/SBMLErrorLog.h:103,
2023-09-08T19:51:29,585                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52:
2023-09-08T19:51:29,586   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:29,587     117 |     struct unary_function
2023-09-08T19:51:29,587         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:33,638   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2023-09-08T19:51:33,639                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2023-09-08T19:51:33,640   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:33,640      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:33,641         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:33,641   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:33,642                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2023-09-08T19:51:33,643   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:33,643     117 |     struct unary_function
2023-09-08T19:51:33,644         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:34,359   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T19:51:34,360   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:34,360      81 |   if (&orig == NULL)
2023-09-08T19:51:34,361         |             ^
2023-09-08T19:51:34,361   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2023-09-08T19:51:34,362      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2023-09-08T19:51:34,363         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:34,363   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T19:51:34,364   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:34,365      99 |   if (&rhs == NULL)
2023-09-08T19:51:34,365         |            ^
2023-09-08T19:51:34,366   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2023-09-08T19:51:34,367      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2023-09-08T19:51:34,368         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:34,897   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T19:51:34,897   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:34,898      81 |   if (&orig == NULL)
2023-09-08T19:51:34,899         |   ^~
2023-09-08T19:51:34,899   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T19:51:34,900   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:34,900      99 |   if (&rhs == NULL)
2023-09-08T19:51:34,901         |   ^~
2023-09-08T19:51:39,095   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:59,
2023-09-08T19:51:39,096                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2023-09-08T19:51:39,097   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:39,098      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:39,098         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:39,099   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:39,100                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:55:
2023-09-08T19:51:39,101   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:39,102     117 |     struct unary_function
2023-09-08T19:51:39,102         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:39,822   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T19:51:39,823   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:39,824      88 |   if (&orig == NULL)
2023-09-08T19:51:39,824         |             ^
2023-09-08T19:51:39,825   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2023-09-08T19:51:39,826      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2023-09-08T19:51:39,826         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:39,827   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T19:51:39,827   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:39,828     114 |   if (&rhs == NULL)
2023-09-08T19:51:39,828         |            ^
2023-09-08T19:51:39,829   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2023-09-08T19:51:39,830     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2023-09-08T19:51:39,830         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:39,852   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T19:51:39,853   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:39,853     651 |   if (&orig == NULL)
2023-09-08T19:51:39,854         |             ^
2023-09-08T19:51:39,855   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2023-09-08T19:51:39,856     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2023-09-08T19:51:39,856         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:39,857   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T19:51:39,858   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:39,858     673 |   if (&rhs == NULL)
2023-09-08T19:51:39,859         |            ^
2023-09-08T19:51:39,860   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2023-09-08T19:51:39,860     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2023-09-08T19:51:39,861         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:51:40,464   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T19:51:40,465   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:40,466      88 |   if (&orig == NULL)
2023-09-08T19:51:40,466         |   ^~
2023-09-08T19:51:40,467   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T19:51:40,467   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:40,468     114 |   if (&rhs == NULL)
2023-09-08T19:51:40,469         |   ^~
2023-09-08T19:51:40,469   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T19:51:40,470   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:40,471     673 |   if (&rhs == NULL)
2023-09-08T19:51:40,472         |   ^~
2023-09-08T19:51:40,478   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T19:51:40,478   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:40,479     651 |   if (&orig == NULL)
2023-09-08T19:51:40,480         |   ^~
2023-09-08T19:51:45,762   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2023-09-08T19:51:45,763                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2023-09-08T19:51:45,763   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:45,764      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:45,764         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:45,765   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:45,766                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2023-09-08T19:51:45,766   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:45,767     117 |     struct unary_function
2023-09-08T19:51:45,767         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:46,493   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T19:51:46,494   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:46,494      91 |   if (&orig == NULL)
2023-09-08T19:51:46,495         |             ^
2023-09-08T19:51:46,496   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2023-09-08T19:51:46,497      88 | Input::Input (const Input& orig)
2023-09-08T19:51:46,497         |               ~~~~~~~~~~~~~^~~~
2023-09-08T19:51:46,498   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T19:51:46,499   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:46,499     114 |   if (&rhs == NULL)
2023-09-08T19:51:46,500         |            ^
2023-09-08T19:51:46,501   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2023-09-08T19:51:46,502     112 | Input::operator=(const Input& rhs)
2023-09-08T19:51:46,502         |                  ~~~~~~~~~~~~~^~~
2023-09-08T19:51:46,503   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:46,504   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T19:51:46,505     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:46,505         |                             ^
2023-09-08T19:51:46,506   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2023-09-08T19:51:46,507     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T19:51:46,508         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:51:46,508   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T19:51:46,509   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:51:46,510     328 |   if (&(name) == NULL)
2023-09-08T19:51:46,510         |               ^
2023-09-08T19:51:46,511   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2023-09-08T19:51:46,512     326 | Input::setName(const std::string& name)
2023-09-08T19:51:46,512         |                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:46,546   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2023-09-08T19:51:46,547   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:46,547     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T19:51:46,548         |                             ^~~~~~~~~~~~~~
2023-09-08T19:51:46,548   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:46,549     117 |     struct unary_function
2023-09-08T19:51:46,549         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:47,159   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T19:51:47,160   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:47,160     328 |   if (&(name) == NULL)
2023-09-08T19:51:47,161         |   ^~
2023-09-08T19:51:47,177   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T19:51:47,178   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:47,178      91 |   if (&orig == NULL)
2023-09-08T19:51:47,179         |   ^~
2023-09-08T19:51:47,179   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T19:51:47,180   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:47,181     114 |   if (&rhs == NULL)
2023-09-08T19:51:47,181         |   ^~
2023-09-08T19:51:47,182   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:47,183   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:47,183     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:47,184         |   ^~
2023-09-08T19:51:54,076   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2023-09-08T19:51:54,076                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2023-09-08T19:51:54,077   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:54,078      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:51:54,078         |                           ^~~~~~~~~~~~~~
2023-09-08T19:51:54,079   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:51:54,079                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2023-09-08T19:51:54,080   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:54,081     117 |     struct unary_function
2023-09-08T19:51:54,081         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:54,812   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T19:51:54,812   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:51:54,813      89 |   if (&orig == NULL)
2023-09-08T19:51:54,814         |             ^
2023-09-08T19:51:54,815   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2023-09-08T19:51:54,815      86 | Output::Output (const Output& orig)
2023-09-08T19:51:54,816         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:54,817   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T19:51:54,818   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:51:54,819     111 |   if (&rhs == NULL)
2023-09-08T19:51:54,819         |            ^
2023-09-08T19:51:54,820   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2023-09-08T19:51:54,820     109 | Output::operator=(const Output& rhs)
2023-09-08T19:51:54,820         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T19:51:54,825   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:54,825   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T19:51:54,826     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:54,826         |                             ^
2023-09-08T19:51:54,827   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2023-09-08T19:51:54,828     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T19:51:54,828         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T19:51:54,829   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T19:51:54,830   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:51:54,830     304 |   if (&(name) == NULL)
2023-09-08T19:51:54,831         |               ^
2023-09-08T19:51:54,832   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2023-09-08T19:51:54,832     302 | Output::setName(const std::string& name)
2023-09-08T19:51:54,833         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:51:54,870   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2023-09-08T19:51:54,870   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:51:54,871     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T19:51:54,871         |                             ^~~~~~~~~~~~~~
2023-09-08T19:51:54,872   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:51:54,873     117 |     struct unary_function
2023-09-08T19:51:54,874         |            ^~~~~~~~~~~~~~
2023-09-08T19:51:55,482   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T19:51:55,483   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:55,484     304 |   if (&(name) == NULL)
2023-09-08T19:51:55,484         |   ^~
2023-09-08T19:51:55,499   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T19:51:55,500   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:55,501      89 |   if (&orig == NULL)
2023-09-08T19:51:55,502         |   ^~
2023-09-08T19:51:55,502   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T19:51:55,503   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:55,503     111 |   if (&rhs == NULL)
2023-09-08T19:51:55,504         |   ^~
2023-09-08T19:51:55,505   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T19:51:55,506   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:51:55,507     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T19:51:55,507         |   ^~
2023-09-08T19:52:02,085   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:70,
2023-09-08T19:52:02,085                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2023-09-08T19:52:02,086   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:02,086      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:02,087         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:02,088   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:02,088                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:66:
2023-09-08T19:52:02,089   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:02,089     117 |     struct unary_function
2023-09-08T19:52:02,090         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:02,816   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T19:52:02,817   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:52:02,817      95 |   if (&orig == NULL)
2023-09-08T19:52:02,818         |             ^
2023-09-08T19:52:02,818   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2023-09-08T19:52:02,819      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2023-09-08T19:52:02,820         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:02,821   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T19:52:02,822   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:52:02,822     120 |   if (&rhs == NULL)
2023-09-08T19:52:02,823         |            ^
2023-09-08T19:52:02,824   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2023-09-08T19:52:02,825     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2023-09-08T19:52:02,825         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:52:02,826   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T19:52:02,827   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2023-09-08T19:52:02,828     295 |   if (&(compartment) == NULL)
2023-09-08T19:52:02,829         |                      ^
2023-09-08T19:52:02,829   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2023-09-08T19:52:02,830     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2023-09-08T19:52:02,831         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T19:52:02,831   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2023-09-08T19:52:02,832   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:52:02,833     329 |   if (&(name) == NULL)
2023-09-08T19:52:02,834         |               ^
2023-09-08T19:52:02,834   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2023-09-08T19:52:02,835     327 | QualitativeSpecies::setName(const std::string& name)
2023-09-08T19:52:02,836         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:03,468   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:03,469     329 |   if (&(name) == NULL)
2023-09-08T19:52:03,470         |   ^~
2023-09-08T19:52:03,484   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T19:52:03,485   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:03,485      95 |   if (&orig == NULL)
2023-09-08T19:52:03,486         |   ^~
2023-09-08T19:52:03,486   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T19:52:03,487   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:03,488     120 |   if (&rhs == NULL)
2023-09-08T19:52:03,488         |   ^~
2023-09-08T19:52:03,489   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T19:52:03,489   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:03,490     295 |   if (&(compartment) == NULL)
2023-09-08T19:52:03,490         |   ^~
2023-09-08T19:52:10,185   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2023-09-08T19:52:10,185                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2023-09-08T19:52:10,186   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:10,187      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:10,187         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:10,188   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:10,189                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2023-09-08T19:52:10,189   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:10,190     117 |     struct unary_function
2023-09-08T19:52:10,191         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:10,937   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T19:52:10,938   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:52:10,938      94 |   if (&orig == NULL)
2023-09-08T19:52:10,939         |             ^
2023-09-08T19:52:10,940   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2023-09-08T19:52:10,940      91 | Transition::Transition (const Transition& orig)
2023-09-08T19:52:10,941         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:10,942   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T19:52:10,942   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:52:10,943     118 |   if (&rhs == NULL)
2023-09-08T19:52:10,944         |            ^
2023-09-08T19:52:10,944   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2023-09-08T19:52:10,945     116 | Transition::operator=(const Transition& rhs)
2023-09-08T19:52:10,946         |                       ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:52:10,950   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2023-09-08T19:52:10,951   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T19:52:10,951     257 |   if (&(name) == NULL)
2023-09-08T19:52:10,952         |               ^
2023-09-08T19:52:10,953   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2023-09-08T19:52:10,953     255 | Transition::setName(const std::string& name)
2023-09-08T19:52:10,954         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:11,611   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:11,612     257 |   if (&(name) == NULL)
2023-09-08T19:52:11,612         |   ^~
2023-09-08T19:52:11,628   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T19:52:11,629   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:11,630     118 |   if (&rhs == NULL)
2023-09-08T19:52:11,630         |   ^~
2023-09-08T19:52:11,646   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T19:52:11,646   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:11,647      94 |   if (&orig == NULL)
2023-09-08T19:52:11,647         |   ^~
2023-09-08T19:52:18,431   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:18,432                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:18,433                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:18,433                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2023-09-08T19:52:18,434                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2023-09-08T19:52:18,435   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:18,436      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:18,436         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:18,437   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:18,438                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:18,439                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2023-09-08T19:52:18,439                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2023-09-08T19:52:18,440   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:18,441     117 |     struct unary_function
2023-09-08T19:52:18,441         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:23,695   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:23,696                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:23,697                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:23,698                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2023-09-08T19:52:23,698                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2023-09-08T19:52:23,699   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:23,700      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:23,700         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:23,701   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:23,702                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:23,702                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2023-09-08T19:52:23,703                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2023-09-08T19:52:23,704   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:23,704     117 |     struct unary_function
2023-09-08T19:52:23,705         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:27,567   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:27,567                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:27,568                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:27,569                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2023-09-08T19:52:27,569                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2023-09-08T19:52:27,570   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:27,570      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:27,571         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:27,572   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:27,572                    from ./base//sbml/packages/qual/validator/QualValidator.h:70,
2023-09-08T19:52:27,573                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2023-09-08T19:52:27,574                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2023-09-08T19:52:27,574   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:27,575     117 |     struct unary_function
2023-09-08T19:52:27,576         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:31,663   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:31,663                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:31,664                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:31,665                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2023-09-08T19:52:31,665   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:31,666      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:31,667         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:31,668   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:31,668                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:31,669   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:31,670     117 |     struct unary_function
2023-09-08T19:52:31,670         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:32,367   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:32,367      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:52:32,368         |                       ^~~~~~~~~~~~~~
2023-09-08T19:52:32,369   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:32,369     117 |     struct unary_function
2023-09-08T19:52:32,370         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:32,563   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:52:32,564   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T19:52:32,565     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T19:52:32,565         |           ^
2023-09-08T19:52:32,566   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2023-09-08T19:52:32,566     313 |   virtual bool visit (const SBase &x)
2023-09-08T19:52:32,567         |                       ~~~~~~~~~~~~~^
2023-09-08T19:52:32,583   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T19:52:32,583   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:52:32,584     419 |   if (&d == NULL) return 0;
2023-09-08T19:52:32,584         |          ^
2023-09-08T19:52:32,585   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2023-09-08T19:52:32,586     417 | QualValidator::validate (const SBMLDocument& d)
2023-09-08T19:52:32,586         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:52:32,587   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T19:52:32,588   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:52:32,588     449 |   if (&filename == NULL) return 0;
2023-09-08T19:52:32,589         |                 ^
2023-09-08T19:52:32,589   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2023-09-08T19:52:32,590     447 | QualValidator::validate (const std::string& filename)
2023-09-08T19:52:32,591         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:52:33,502   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T19:52:33,503   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:33,504     419 |   if (&d == NULL) return 0;
2023-09-08T19:52:33,505         |   ^~
2023-09-08T19:52:33,518   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T19:52:33,519   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:33,520     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T19:52:33,520         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:52:33,534   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T19:52:33,535   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:33,536     449 |   if (&filename == NULL) return 0;
2023-09-08T19:52:33,536         |   ^~
2023-09-08T19:52:37,940   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:52:37,941                    from ./base//sbml/Model.h:409,
2023-09-08T19:52:37,941                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2023-09-08T19:52:37,942   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:37,943      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:37,944         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:37,944   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:37,945                    from ./base//sbml/Model.h:407:
2023-09-08T19:52:37,946   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:37,946     117 |     struct unary_function
2023-09-08T19:52:37,947         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:42,467   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:42,468                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:42,468                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:42,469                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2023-09-08T19:52:42,469                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2023-09-08T19:52:42,470   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:42,471      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:42,471         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:42,472   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:42,472                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2023-09-08T19:52:42,473   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:42,474     117 |     struct unary_function
2023-09-08T19:52:42,474         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:43,173   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:52:43,173   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:52:43,174      97 |   if (&(node) == NULL)
2023-09-08T19:52:43,175         |               ^
2023-09-08T19:52:43,175   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2023-09-08T19:52:43,176      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:52:43,177         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:52:43,684   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:52:43,685      97 |   if (&(node) == NULL)
2023-09-08T19:52:43,686         |   ^~
2023-09-08T19:52:47,077   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:47,078                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:47,078                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:47,079                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2023-09-08T19:52:47,080   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:47,080      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:47,081         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:47,082   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:47,082                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:47,083   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:47,084     117 |     struct unary_function
2023-09-08T19:52:47,084         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:51,095   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:51,096                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:51,096                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:51,097                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2023-09-08T19:52:51,098   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:51,098      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:51,099         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:51,099   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:51,100                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:51,100   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:51,101     117 |     struct unary_function
2023-09-08T19:52:51,101         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:54,941   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:54,942                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:54,942                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:54,943                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2023-09-08T19:52:54,943   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:54,944      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:54,944         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:54,945   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:54,945                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:52:54,946   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:54,947     117 |     struct unary_function
2023-09-08T19:52:54,947         |            ^~~~~~~~~~~~~~
2023-09-08T19:52:59,017   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:52:59,017                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:52:59,018                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:52:59,019                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2023-09-08T19:52:59,019                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2023-09-08T19:52:59,020   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:52:59,020      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:52:59,021         |                           ^~~~~~~~~~~~~~
2023-09-08T19:52:59,022   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:52:59,022                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2023-09-08T19:52:59,023   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:52:59,023     117 |     struct unary_function
2023-09-08T19:52:59,024         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:04,637   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:53:04,637                    from ./base//sbml/Model.h:409,
2023-09-08T19:53:04,638                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2023-09-08T19:53:04,639   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:04,639      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:04,640         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:04,641   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:04,641                    from ./base//sbml/Model.h:407:
2023-09-08T19:53:04,642   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:04,643     117 |     struct unary_function
2023-09-08T19:53:04,643         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:08,930   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:53:08,931                    from ./base//sbml/Model.h:409,
2023-09-08T19:53:08,931                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2023-09-08T19:53:08,932   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:08,932      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:08,933         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:08,934   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:08,934                    from ./base//sbml/Model.h:407:
2023-09-08T19:53:08,935   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:08,935     117 |     struct unary_function
2023-09-08T19:53:08,936         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:13,199   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:53:13,200                    from ./base//sbml/Model.h:409,
2023-09-08T19:53:13,201                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2023-09-08T19:53:13,202   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:13,202      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:13,203         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:13,203   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:13,204                    from ./base//sbml/Model.h:407:
2023-09-08T19:53:13,205   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:13,205     117 |     struct unary_function
2023-09-08T19:53:13,206         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:13,658   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T19:53:13,659   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:53:13,659      74 |   if (&orig == NULL)
2023-09-08T19:53:13,660         |             ^
2023-09-08T19:53:13,661   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2023-09-08T19:53:13,662      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2023-09-08T19:53:13,663         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:53:13,663   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T19:53:13,664   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:53:13,665     138 |   if (&rhs == NULL)
2023-09-08T19:53:13,665         |            ^
2023-09-08T19:53:13,666   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2023-09-08T19:53:13,667     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2023-09-08T19:53:13,668         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:53:14,153   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T19:53:14,153   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:14,154      74 |   if (&orig == NULL)
2023-09-08T19:53:14,155         |   ^~
2023-09-08T19:53:14,156   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T19:53:14,156   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:14,157     138 |   if (&rhs == NULL)
2023-09-08T19:53:14,158         |   ^~
2023-09-08T19:53:17,267   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:53:17,268                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:17,268                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2023-09-08T19:53:17,269   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:17,269      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:17,270         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:17,270   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:17,271                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:53:17,271   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:17,272     117 |     struct unary_function
2023-09-08T19:53:17,273         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:29,770   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T19:53:29,770   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2023-09-08T19:53:29,771      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T19:53:29,771         |                       ^
2023-09-08T19:53:29,772   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2023-09-08T19:53:29,772      48 | IdList::IdList(const std::string& commaSeparated)
2023-09-08T19:53:29,773         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T19:53:30,077   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T19:53:30,077   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:53:30,078      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T19:53:30,079         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T19:53:40,735   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:53:40,736                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:40,736                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2023-09-08T19:53:40,737   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:40,738      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:40,738         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:40,739   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:40,740                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:53:40,740   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:40,741     117 |     struct unary_function
2023-09-08T19:53:40,742         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:51,033   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:53:51,034                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:51,034                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2023-09-08T19:53:51,035   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:51,036      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:51,037         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:51,037   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:51,038                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:53:51,039   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:51,039     117 |     struct unary_function
2023-09-08T19:53:51,039         |            ^~~~~~~~~~~~~~
2023-09-08T19:53:55,761   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:53:55,761                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:53:55,762                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2023-09-08T19:53:55,763   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:53:55,763      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:53:55,764         |                           ^~~~~~~~~~~~~~
2023-09-08T19:53:55,764   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:53:55,765                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:53:55,765   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:53:55,766     117 |     struct unary_function
2023-09-08T19:53:55,766         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:02,979   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:02,979                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:54:02,980                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2023-09-08T19:54:02,980                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2023-09-08T19:54:02,981   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:02,982      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:02,983         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:02,983   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:02,984                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:02,985                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2023-09-08T19:54:02,986                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2023-09-08T19:54:02,986   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:02,987     117 |     struct unary_function
2023-09-08T19:54:02,988         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:08,693   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:08,694                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:54:08,694                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2023-09-08T19:54:08,695                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2023-09-08T19:54:08,695   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:08,696      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:08,697         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:08,697   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:08,698                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:08,699                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2023-09-08T19:54:08,700                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2023-09-08T19:54:08,700   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:08,701     117 |     struct unary_function
2023-09-08T19:54:08,702         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:14,981   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:14,982                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:54:14,983                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2023-09-08T19:54:14,984                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2023-09-08T19:54:14,984   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:14,985      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:14,985         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:14,986   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:14,986                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:14,987                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2023-09-08T19:54:14,988                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2023-09-08T19:54:14,988   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:14,989     117 |     struct unary_function
2023-09-08T19:54:14,989         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:20,752   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:20,752                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:54:20,753                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2023-09-08T19:54:20,754                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2023-09-08T19:54:20,754   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:20,755      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:20,755         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:20,756   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:20,757                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:20,757                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2023-09-08T19:54:20,758                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2023-09-08T19:54:20,759   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:20,759     117 |     struct unary_function
2023-09-08T19:54:20,760         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:26,277   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:54:26,278                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:54:26,278                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2023-09-08T19:54:26,279                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2023-09-08T19:54:26,280   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:26,281      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:26,281         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:26,282   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:26,283                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:26,283                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2023-09-08T19:54:26,284                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2023-09-08T19:54:26,285   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:26,285     117 |     struct unary_function
2023-09-08T19:54:26,286         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:31,776   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:54:31,776                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:31,777                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:54:31,778                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2023-09-08T19:54:31,779                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2023-09-08T19:54:31,779   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:31,780      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:31,780         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:31,781   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:31,781                    from ./base//sbml/validator/Validator.h:70,
2023-09-08T19:54:31,782                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2023-09-08T19:54:31,782                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2023-09-08T19:54:31,783   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:31,784     117 |     struct unary_function
2023-09-08T19:54:31,784         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:36,000   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:54:36,000                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:36,001                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2023-09-08T19:54:36,001   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:36,002      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:36,002         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:36,003   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:36,004                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:54:36,004   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:36,005     117 |     struct unary_function
2023-09-08T19:54:36,005         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:39,898   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:54:39,899                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:39,900                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2023-09-08T19:54:39,900   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:39,901      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:39,901         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:39,902   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:39,903                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:54:39,903   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:39,904     117 |     struct unary_function
2023-09-08T19:54:39,905         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:43,885   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:54:43,886                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:54:43,887                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2023-09-08T19:54:43,887   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:43,888      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:43,888         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:43,889   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:43,890                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:54:43,891   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:43,891     117 |     struct unary_function
2023-09-08T19:54:43,892         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:48,175   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:54:48,176                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:48,176                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:48,177                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:48,177                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:48,178                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2023-09-08T19:54:48,178                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2023-09-08T19:54:48,179   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:48,179      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:48,179         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:48,180   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:48,180                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:48,181                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:48,181                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2023-09-08T19:54:48,182   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:48,183     117 |     struct unary_function
2023-09-08T19:54:48,183         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:54,604   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:54:54,605                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:54,606                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:54,606                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:54,607                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:54,608                    from ./base//sbml/validator/SBMLInternalValidator.h:64,
2023-09-08T19:54:54,608                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2023-09-08T19:54:54,609   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:54,610      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:54,611         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:54,611   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:54,612                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:54,613                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:54,613                    from ./base//sbml/validator/SBMLInternalValidator.h:63:
2023-09-08T19:54:54,614   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:54,615     117 |     struct unary_function
2023-09-08T19:54:54,615         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:59,304   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:54:59,305                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T19:54:59,305                    from ./base//sbml/SBMLDocument.h:292,
2023-09-08T19:54:59,306                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T19:54:59,307                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T19:54:59,307                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2023-09-08T19:54:59,308   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:54:59,309      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:54:59,310         |                           ^~~~~~~~~~~~~~
2023-09-08T19:54:59,310   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:54:59,311                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:54:59,312                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:54:59,313                    from ./base//sbml/validator/SBMLValidator.h:73:
2023-09-08T19:54:59,313   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:54:59,314     117 |     struct unary_function
2023-09-08T19:54:59,314         |            ^~~~~~~~~~~~~~
2023-09-08T19:54:59,613   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T19:54:59,613   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T19:54:59,614      59 |   if (&orig == NULL)
2023-09-08T19:54:59,614         |             ^
2023-09-08T19:54:59,615   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2023-09-08T19:54:59,616      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2023-09-08T19:54:59,616         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T19:54:59,617   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T19:54:59,617   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T19:54:59,618      87 |   if (&rhs == NULL)
2023-09-08T19:54:59,619         |            ^
2023-09-08T19:54:59,619   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2023-09-08T19:54:59,620      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2023-09-08T19:54:59,620         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:54:59,621   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T19:54:59,622   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T19:54:59,623     168 |   if (&msg == NULL) return;
2023-09-08T19:54:59,623         |            ^
2023-09-08T19:54:59,624   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2023-09-08T19:54:59,625     166 | SBMLValidator::logFailure (const SBMLError& msg)
2023-09-08T19:54:59,626         |                            ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:54:59,626   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T19:54:59,627   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:54:59,628     182 |   if (&filename == NULL) return 0;
2023-09-08T19:54:59,629         |                 ^
2023-09-08T19:54:59,629   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2023-09-08T19:54:59,630     180 | SBMLValidator::validate (const std::string& filename)
2023-09-08T19:54:59,631         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:55:00,145   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T19:55:00,145   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:00,146      87 |   if (&rhs == NULL)
2023-09-08T19:55:00,147         |   ^~
2023-09-08T19:55:00,147   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T19:55:00,148   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:00,149      59 |   if (&orig == NULL)
2023-09-08T19:55:00,149         |   ^~
2023-09-08T19:55:00,151   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T19:55:00,152   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:00,153     168 |   if (&msg == NULL) return;
2023-09-08T19:55:00,154         |   ^~
2023-09-08T19:55:00,154   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T19:55:00,155   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:00,155     182 |   if (&filename == NULL) return 0;
2023-09-08T19:55:00,156         |   ^~
2023-09-08T19:55:03,323   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:55:03,324                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:55:03,325                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2023-09-08T19:55:03,325   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:03,326      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:03,326         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:03,327   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:03,328                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:55:03,328   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:03,329     117 |     struct unary_function
2023-09-08T19:55:03,330         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:10,540   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:55:10,540                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:55:10,540                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2023-09-08T19:55:10,541   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:10,542      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:10,542         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:10,543   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:10,543                    from ./base//sbml/UnitDefinition.h:277:
2023-09-08T19:55:10,544   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:10,545     117 |     struct unary_function
2023-09-08T19:55:10,545         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:19,806   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:55:19,807                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:55:19,808                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:55:19,808                    from ./base/sbml/validator/VConstraint.cpp:33:
2023-09-08T19:55:19,809   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:19,810      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:19,810         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:19,811   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:19,812                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:55:19,812   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:19,813     117 |     struct unary_function
2023-09-08T19:55:19,814         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:20,330   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2023-09-08T19:55:20,331   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2023-09-08T19:55:20,332      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:20,332         |               ^
2023-09-08T19:55:20,333   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2023-09-08T19:55:20,334      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T19:55:20,334         |                          ~~~~~~~~~~~~~^~~~~~
2023-09-08T19:55:20,335   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T19:55:20,335      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:20,336         |                                   ^
2023-09-08T19:55:20,336   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2023-09-08T19:55:20,337      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T19:55:20,337         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T19:55:20,787   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:20,787      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:20,788         |               ^
2023-09-08T19:55:20,789   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:20,789      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T19:55:20,790         |                                   ^
2023-09-08T19:55:23,659   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2023-09-08T19:55:23,660                    from ./base/sbml/validator/Validator.cpp:39:
2023-09-08T19:55:23,660   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:23,661      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:23,661         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:23,662   In file included from /usr/include/c++/12/functional:49,
2023-09-08T19:55:23,663                    from ./base/sbml/validator/Validator.cpp:34:
2023-09-08T19:55:23,663   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:23,664     117 |     struct unary_function
2023-09-08T19:55:23,665         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:24,319   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:24,320      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T19:55:24,320         |                       ^~~~~~~~~~~~~~
2023-09-08T19:55:24,321   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:24,322     117 |     struct unary_function
2023-09-08T19:55:24,322         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:24,791   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T19:55:24,792   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T19:55:24,793     709 |   if (&msg == NULL) return;
2023-09-08T19:55:24,793         |            ^
2023-09-08T19:55:24,794   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2023-09-08T19:55:24,795     707 | Validator::logFailure (const SBMLError& msg)
2023-09-08T19:55:24,796         |                        ~~~~~~~~~~~~~~~~~^~~
2023-09-08T19:55:24,796   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T19:55:24,797   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T19:55:24,798     754 |   if (&d == NULL) return 0;
2023-09-08T19:55:24,799         |          ^
2023-09-08T19:55:24,799   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2023-09-08T19:55:24,800     752 | Validator::validate (const SBMLDocument& d)
2023-09-08T19:55:24,801         |                      ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T19:55:24,802   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T19:55:24,802   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T19:55:24,803     815 |   if (&filename == NULL) return 0;
2023-09-08T19:55:24,803         |                 ^
2023-09-08T19:55:24,804   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2023-09-08T19:55:24,805     813 | Validator::validate (const std::string& filename)
2023-09-08T19:55:24,805         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T19:55:26,314   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T19:55:26,315   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:26,315     709 |   if (&msg == NULL) return;
2023-09-08T19:55:26,316         |   ^~
2023-09-08T19:55:26,337   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T19:55:26,338   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:26,338     754 |   if (&d == NULL) return 0;
2023-09-08T19:55:26,339         |   ^~
2023-09-08T19:55:26,340   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T19:55:26,341   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:26,342     815 |   if (&filename == NULL) return 0;
2023-09-08T19:55:26,343         |   ^~
2023-09-08T19:55:32,954   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:32,955                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:32,956                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2023-09-08T19:55:32,957   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:32,957      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:32,958         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:32,959   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:32,960                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:32,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:32,961     117 |     struct unary_function
2023-09-08T19:55:32,961         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:37,526   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:37,526                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:37,527                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2023-09-08T19:55:37,527   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:37,528      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:37,528         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:37,529   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:37,530                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:37,531   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:37,532     117 |     struct unary_function
2023-09-08T19:55:37,532         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:41,841   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:41,842                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:41,842                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2023-09-08T19:55:41,843   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:41,843      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:41,844         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:41,845   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:41,845                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:41,846   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:41,846     117 |     struct unary_function
2023-09-08T19:55:41,847         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:50,241   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:50,241                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:50,242                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2023-09-08T19:55:50,242   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:50,243      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:50,244         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:50,244   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:50,245                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:50,245   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:50,246     117 |     struct unary_function
2023-09-08T19:55:50,246         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:55,224   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:55,225                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:55,226                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2023-09-08T19:55:55,227   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:55,227      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:55,228         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:55,229   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:55,230                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:55,230   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:55,231     117 |     struct unary_function
2023-09-08T19:55:55,232         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:55,621   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:55:55,622   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:55:55,622     104 |   if (&(node) == NULL)
2023-09-08T19:55:55,623         |               ^
2023-09-08T19:55:55,624   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2023-09-08T19:55:55,625     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:55:55,625         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:55:56,125   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:55:56,126     104 |   if (&(node) == NULL)
2023-09-08T19:55:56,127         |   ^~
2023-09-08T19:55:59,547   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:55:59,548                    from ./base//sbml/Model.h:409,
2023-09-08T19:55:59,548                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2023-09-08T19:55:59,549   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:59,549      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:55:59,550         |                           ^~~~~~~~~~~~~~
2023-09-08T19:55:59,550   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:55:59,551                    from ./base//sbml/Model.h:407:
2023-09-08T19:55:59,551   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:59,552     117 |     struct unary_function
2023-09-08T19:55:59,553         |            ^~~~~~~~~~~~~~
2023-09-08T19:55:59,958   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:55:59,958     119 | struct CycleContains : public unary_function<IdList, bool>
2023-09-08T19:55:59,959         |                               ^~~~~~~~~~~~~~
2023-09-08T19:55:59,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:55:59,960     117 |     struct unary_function
2023-09-08T19:55:59,961         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:05,128   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:56:05,128                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:05,129                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:05,130                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2023-09-08T19:56:05,130   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:05,131      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:05,132         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:05,132   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:05,133                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:56:05,134                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:56:05,134                    from ./base//sbml/SBO.h:197,
2023-09-08T19:56:05,135                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2023-09-08T19:56:05,136   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:05,137     117 |     struct unary_function
2023-09-08T19:56:05,137         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:09,496   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:09,496                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:09,497                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2023-09-08T19:56:09,497   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:09,498      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:09,499         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:09,499   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:09,500                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:09,501   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:09,501     117 |     struct unary_function
2023-09-08T19:56:09,502         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:14,157   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:14,158                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:14,159                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2023-09-08T19:56:14,160   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:14,160      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:14,161         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:14,161   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:14,162                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:14,162   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:14,163     117 |     struct unary_function
2023-09-08T19:56:14,163         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:14,553   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:14,554   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:14,555     101 |   if (&(node) == NULL)
2023-09-08T19:56:14,555         |               ^
2023-09-08T19:56:14,556   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2023-09-08T19:56:14,556      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:14,557         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:15,039   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:15,040     101 |   if (&(node) == NULL)
2023-09-08T19:56:15,040         |   ^~
2023-09-08T19:56:18,306   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:18,306                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:18,307                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2023-09-08T19:56:18,308   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:18,309      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:18,309         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:18,310   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:18,311                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:18,312   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:18,312     117 |     struct unary_function
2023-09-08T19:56:18,313         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:22,706   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:22,706                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:22,707                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2023-09-08T19:56:22,708   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:22,708      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:22,709         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:22,710   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:22,710                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:22,711   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:22,712     117 |     struct unary_function
2023-09-08T19:56:22,713         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:23,102   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:23,102   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:23,103     103 |   if (&(node) == NULL)
2023-09-08T19:56:23,104         |               ^
2023-09-08T19:56:23,104   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2023-09-08T19:56:23,105     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:23,105         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:23,594   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:23,594     103 |   if (&(node) == NULL)
2023-09-08T19:56:23,595         |   ^~
2023-09-08T19:56:26,898   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:26,899                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:26,899                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2023-09-08T19:56:26,900   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:26,901      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:26,902         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:26,902   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:26,903                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:26,904   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:26,904     117 |     struct unary_function
2023-09-08T19:56:26,905         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:31,209   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:31,210                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:31,210                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2023-09-08T19:56:31,211   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:31,212      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:31,213         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:31,213   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:31,214                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:31,215   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:31,216     117 |     struct unary_function
2023-09-08T19:56:31,216         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:31,605   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:56:31,605   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:56:31,606     104 |   if (&(node) == NULL)
2023-09-08T19:56:31,607         |               ^
2023-09-08T19:56:31,608   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T19:56:31,608     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:56:31,609         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:56:32,101   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:56:32,102     104 |   if (&(node) == NULL)
2023-09-08T19:56:32,103         |   ^~
2023-09-08T19:56:35,737   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:35,738                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:35,738                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2023-09-08T19:56:35,739   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:35,739      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:35,740         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:35,740   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:35,741                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:35,741   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:35,742     117 |     struct unary_function
2023-09-08T19:56:35,743         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:39,997   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:56:39,997                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:39,998                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:39,998                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T19:56:39,999                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2023-09-08T19:56:39,999   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:40,000      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:40,000         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:40,001   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:40,001                    from ./base/sbml/validator/constraints/IdBase.h:42:
2023-09-08T19:56:40,002   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:40,002     117 |     struct unary_function
2023-09-08T19:56:40,003         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:44,052   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:56:44,052                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:44,053                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:44,054                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2023-09-08T19:56:44,054   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:44,055      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:44,056         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:44,056   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:44,057                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:56:44,057   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:44,058     117 |     struct unary_function
2023-09-08T19:56:44,059         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:48,149   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:56:48,150                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:56:48,150                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:56:48,151                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2023-09-08T19:56:48,152   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:48,153      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:48,153         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:48,154   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:48,155                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:56:48,156                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:56:48,156                    from ./base//sbml/SBO.h:197,
2023-09-08T19:56:48,157                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2023-09-08T19:56:48,157   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:48,158     117 |     struct unary_function
2023-09-08T19:56:48,158         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:52,064   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:52,064                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:52,065                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2023-09-08T19:56:52,065   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:52,066      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:52,066         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:52,067   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:52,068                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:52,068   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:52,069     117 |     struct unary_function
2023-09-08T19:56:52,069         |            ^~~~~~~~~~~~~~
2023-09-08T19:56:57,009   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:56:57,010                    from ./base//sbml/Model.h:409,
2023-09-08T19:56:57,011                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2023-09-08T19:56:57,011   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:56:57,012      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:56:57,012         |                           ^~~~~~~~~~~~~~
2023-09-08T19:56:57,013   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:56:57,014                    from ./base//sbml/Model.h:407:
2023-09-08T19:56:57,014   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:56:57,015     117 |     struct unary_function
2023-09-08T19:56:57,016         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:01,459   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:01,460                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:57:01,460                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2023-09-08T19:57:01,461   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:01,462      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:01,462         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:01,463   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:01,463                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:01,464                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:01,465                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:01,465                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:01,466                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2023-09-08T19:57:01,466   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:01,467     117 |     struct unary_function
2023-09-08T19:57:01,467         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:05,317   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:05,317                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:57:05,318                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2023-09-08T19:57:05,319   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:05,320      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:05,320         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:05,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:05,321                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:05,322                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:05,323                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:05,323                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:05,324                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2023-09-08T19:57:05,324   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:05,325     117 |     struct unary_function
2023-09-08T19:57:05,325         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:09,196   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:09,196                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:57:09,196                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2023-09-08T19:57:09,197   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:09,198      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:09,198         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:09,199   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:09,199                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:09,200                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:09,201                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:09,201                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:09,202                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2023-09-08T19:57:09,203   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:09,203     117 |     struct unary_function
2023-09-08T19:57:09,204         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:13,064   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:13,064                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:57:13,065                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2023-09-08T19:57:13,066   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:13,066      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:13,067         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:13,068   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:13,068                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:13,069                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:13,069                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:13,070                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:13,071                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2023-09-08T19:57:13,071   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:13,072     117 |     struct unary_function
2023-09-08T19:57:13,073         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:16,911   In file included from ./base//sbml/Rule.h:140,
2023-09-08T19:57:16,912                    from ./base//sbml/AssignmentRule.h:170,
2023-09-08T19:57:16,913                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2023-09-08T19:57:16,913   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:16,914      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:16,915         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:16,915   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:16,916                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:16,916                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:16,917                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:16,917                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:16,918                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2023-09-08T19:57:16,918   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:16,919     117 |     struct unary_function
2023-09-08T19:57:16,919         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:20,802   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:57:20,802                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:20,803                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:20,803                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2023-09-08T19:57:20,804   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:20,804      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:20,805         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:20,806   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:20,806                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:57:20,807                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:57:20,807                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:57:20,808                    from ./base//sbml/SBase.h:154,
2023-09-08T19:57:20,809                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2023-09-08T19:57:20,809   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:20,810     117 |     struct unary_function
2023-09-08T19:57:20,811         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:24,763   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:24,764                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:24,764                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2023-09-08T19:57:24,765   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:24,765      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:24,766         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:24,767   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:24,767                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:24,768   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:24,769     117 |     struct unary_function
2023-09-08T19:57:24,769         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:25,160   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:25,161   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:25,162     104 |   if (&(node) == NULL)
2023-09-08T19:57:25,163         |               ^
2023-09-08T19:57:25,164   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2023-09-08T19:57:25,164     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:25,165         |                                             ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:25,644   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:25,645     104 |   if (&(node) == NULL)
2023-09-08T19:57:25,645         |   ^~
2023-09-08T19:57:28,887   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:28,888                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:28,888                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2023-09-08T19:57:28,889   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:28,889      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:28,890         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:28,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:28,891                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:28,892   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:28,892     117 |     struct unary_function
2023-09-08T19:57:28,893         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:29,283   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:29,283   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:29,284     104 |   if (&(node) == NULL)
2023-09-08T19:57:29,284         |               ^
2023-09-08T19:57:29,285   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T19:57:29,286     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:29,287         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:29,782   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:29,782     104 |   if (&(node) == NULL)
2023-09-08T19:57:29,783         |   ^~
2023-09-08T19:57:33,422   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:33,422                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:33,423                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2023-09-08T19:57:33,424   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:33,424      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:33,425         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:33,425   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:33,426                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:33,427   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:33,427     117 |     struct unary_function
2023-09-08T19:57:33,428         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:38,196   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:38,196                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:38,197                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2023-09-08T19:57:38,198   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:38,198      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:38,199         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:38,200   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:38,200                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:38,201   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:38,201     117 |     struct unary_function
2023-09-08T19:57:38,202         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:38,592   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:38,593   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:38,593     100 |   if (&(node) == NULL)
2023-09-08T19:57:38,594         |               ^
2023-09-08T19:57:38,594   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2023-09-08T19:57:38,595      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:38,596         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:39,079   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:39,080     100 |   if (&(node) == NULL)
2023-09-08T19:57:39,080         |   ^~
2023-09-08T19:57:42,339   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:42,339                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:42,340                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2023-09-08T19:57:42,341   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:42,341      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:42,342         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:42,343   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:42,344                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:42,344   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:42,345     117 |     struct unary_function
2023-09-08T19:57:42,346         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:47,023   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:57:47,023                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:47,024                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:47,025                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2023-09-08T19:57:47,025   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:47,026      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:47,027         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:47,027   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:47,028                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:57:47,029   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:47,029     117 |     struct unary_function
2023-09-08T19:57:47,030         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:50,798   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:57:50,798                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:57:50,799                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:57:50,800                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2023-09-08T19:57:50,800   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:50,801      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:50,801         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:50,802   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:50,802                    from ./base//sbml/validator/VConstraint.h:48:
2023-09-08T19:57:50,803   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:50,803     117 |     struct unary_function
2023-09-08T19:57:50,804         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:54,765   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:54,765                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:54,766                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2023-09-08T19:57:54,767   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:54,767      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:54,768         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:54,768   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:54,769                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:54,769   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:54,770     117 |     struct unary_function
2023-09-08T19:57:54,771         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:55,171   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:55,171   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:55,172     100 |   if (&(node) == NULL)
2023-09-08T19:57:55,173         |               ^
2023-09-08T19:57:55,173   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2023-09-08T19:57:55,174      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:55,175         |                                                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:57:55,672   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:57:55,673     100 |   if (&(node) == NULL)
2023-09-08T19:57:55,674         |   ^~
2023-09-08T19:57:59,125   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:57:59,126                    from ./base//sbml/Model.h:409,
2023-09-08T19:57:59,126                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2023-09-08T19:57:59,127   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:57:59,127      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:57:59,128         |                           ^~~~~~~~~~~~~~
2023-09-08T19:57:59,129   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:57:59,129                    from ./base//sbml/Model.h:407:
2023-09-08T19:57:59,130   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:57:59,131     117 |     struct unary_function
2023-09-08T19:57:59,131         |            ^~~~~~~~~~~~~~
2023-09-08T19:57:59,525   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:57:59,525   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:57:59,526     105 |   if (&(node) == NULL)
2023-09-08T19:57:59,527         |               ^
2023-09-08T19:57:59,527   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2023-09-08T19:57:59,528     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:57:59,528         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:00,015   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:00,016     105 |   if (&(node) == NULL)
2023-09-08T19:58:00,016         |   ^~
2023-09-08T19:58:03,301   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:03,302                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:03,302                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2023-09-08T19:58:03,303   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:03,303      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:03,304         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:03,304   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:03,305                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:03,305   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:03,306     117 |     struct unary_function
2023-09-08T19:58:03,307         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:03,701   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:58:03,702   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:58:03,702     104 |   if (&(node) == NULL)
2023-09-08T19:58:03,703         |               ^
2023-09-08T19:58:03,704   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2023-09-08T19:58:03,705     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:58:03,705         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:04,189   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:04,190     104 |   if (&(node) == NULL)
2023-09-08T19:58:04,191         |   ^~
2023-09-08T19:58:07,461   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:07,462                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:07,463                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2023-09-08T19:58:07,463   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:07,464      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:07,465         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:07,465   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:07,466                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:07,467   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:07,468     117 |     struct unary_function
2023-09-08T19:58:07,468         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:10,059   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2023-09-08T19:58:10,060   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2023-09-08T19:58:10,060     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:10,061         |                          ^~
2023-09-08T19:58:10,062   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2023-09-08T19:58:10,062     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:10,063         |                      ^~~~~~~
2023-09-08T19:58:10,063   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2023-09-08T19:58:10,064     188 |       sprintf(react, "KL_%u", n);
2023-09-08T19:58:10,064         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T19:58:10,065   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2023-09-08T19:58:10,065     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:10,066         |                         ^~
2023-09-08T19:58:10,066   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2023-09-08T19:58:10,067     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:10,067         |                   ^~~~~~~~~
2023-09-08T19:58:10,068   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2023-09-08T19:58:10,069     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T19:58:10,069         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T19:58:21,431   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:58:21,432                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:21,433                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:21,434                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2023-09-08T19:58:21,434                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2023-09-08T19:58:21,435   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:21,436      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:21,437         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:21,437   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:21,438                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2023-09-08T19:58:21,439   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:21,440     117 |     struct unary_function
2023-09-08T19:58:21,440         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:25,306   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:25,307                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:25,307                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2023-09-08T19:58:25,308   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:25,308      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:25,309         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:25,310   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:25,311                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:25,311   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:25,312     117 |     struct unary_function
2023-09-08T19:58:25,313         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:25,705   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:58:25,706   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:58:25,707     100 |   if (&(node) == NULL)
2023-09-08T19:58:25,707         |               ^
2023-09-08T19:58:25,708   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2023-09-08T19:58:25,708      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:58:25,709         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:26,200   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:26,200     100 |   if (&(node) == NULL)
2023-09-08T19:58:26,201         |   ^~
2023-09-08T19:58:29,452   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:29,452                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:29,453                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2023-09-08T19:58:29,453   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:29,454      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:29,455         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:29,455   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:29,456                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:29,456   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:29,457     117 |     struct unary_function
2023-09-08T19:58:29,458         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:29,848   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:58:29,848   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:58:29,849     103 |   if (&(node) == NULL)
2023-09-08T19:58:29,850         |               ^
2023-09-08T19:58:29,851   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2023-09-08T19:58:29,851     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:58:29,852         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:58:30,336   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:58:30,337     103 |   if (&(node) == NULL)
2023-09-08T19:58:30,338         |   ^~
2023-09-08T19:58:33,625   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:33,626                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:33,627                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2023-09-08T19:58:33,627   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:33,628      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:33,629         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:33,629   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:33,630                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:33,631   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:33,631     117 |     struct unary_function
2023-09-08T19:58:33,632         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:38,614   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:58:38,614                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:38,615                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:38,615                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2023-09-08T19:58:38,615   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:38,616      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:38,616         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:38,617   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:38,617                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:58:38,618                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:58:38,618                    from ./base//sbml/SBO.h:197,
2023-09-08T19:58:38,619                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2023-09-08T19:58:38,619   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:38,620     117 |     struct unary_function
2023-09-08T19:58:38,620         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:42,636   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:42,637                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:42,638                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2023-09-08T19:58:42,638   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:42,639      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:42,639         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:42,640   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:42,641                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:42,641   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:42,642     117 |     struct unary_function
2023-09-08T19:58:42,643         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:47,333   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:47,334                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:47,334                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2023-09-08T19:58:47,335   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:47,335      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:47,336         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:47,337   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:47,337                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:47,338   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:47,339     117 |     struct unary_function
2023-09-08T19:58:47,339         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:52,007   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:58:52,008                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:58:52,009                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:58:52,009                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T19:58:52,010                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2023-09-08T19:58:52,010                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2023-09-08T19:58:52,011   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:52,012      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:52,013         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:52,013   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:52,014                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T19:58:52,014                    from ./base//sbml/annotation/RDFAnnotationParser.h:70,
2023-09-08T19:58:52,015                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T19:58:52,015                    from ./base//sbml/SBase.h:154,
2023-09-08T19:58:52,016                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2023-09-08T19:58:52,016   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:52,017     117 |     struct unary_function
2023-09-08T19:58:52,017         |            ^~~~~~~~~~~~~~
2023-09-08T19:58:57,119   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:58:57,120                    from ./base//sbml/Model.h:409,
2023-09-08T19:58:57,120                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2023-09-08T19:58:57,121   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:58:57,121      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:58:57,122         |                           ^~~~~~~~~~~~~~
2023-09-08T19:58:57,122   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:58:57,123                    from ./base//sbml/Model.h:407:
2023-09-08T19:58:57,124   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:58:57,124     117 |     struct unary_function
2023-09-08T19:58:57,125         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:01,044   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:01,046                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:01,047                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2023-09-08T19:59:01,049   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:01,050      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:01,050         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:01,051   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:01,052                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:01,052   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:01,053     117 |     struct unary_function
2023-09-08T19:59:01,054         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:05,229   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:05,229                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:05,230                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2023-09-08T19:59:05,231   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:05,231      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:05,232         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:05,233   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:05,233                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:05,234   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:05,235     117 |     struct unary_function
2023-09-08T19:59:05,235         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:09,149   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:59:09,150                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:59:09,150                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:59:09,151                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2023-09-08T19:59:09,152                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2023-09-08T19:59:09,152   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:09,153      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:09,153         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:09,154   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:09,154                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2023-09-08T19:59:09,155   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:09,155     117 |     struct unary_function
2023-09-08T19:59:09,156         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:14,633   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:14,634                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:14,635                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2023-09-08T19:59:14,635   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:14,636      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:14,636         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:14,637   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:14,638                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:14,638   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:14,639     117 |     struct unary_function
2023-09-08T19:59:14,640         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:19,223   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:19,224                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:19,225                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2023-09-08T19:59:19,225   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:19,226      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:19,227         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:19,228   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:19,228                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:19,229   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:19,230     117 |     struct unary_function
2023-09-08T19:59:19,230         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:23,160   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:23,161                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:23,161                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2023-09-08T19:59:23,162   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:23,163      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:23,163         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:23,164   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:23,165                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:23,165   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:23,166     117 |     struct unary_function
2023-09-08T19:59:23,167         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:27,297   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:27,298                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:27,299                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2023-09-08T19:59:27,300   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:27,300      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:27,301         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:27,301   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:27,302                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:27,302   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:27,303     117 |     struct unary_function
2023-09-08T19:59:27,303         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:31,435   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:31,435                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:31,436                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2023-09-08T19:59:31,436   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:31,437      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:31,438         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:31,438   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:31,439                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:31,439   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:31,440     117 |     struct unary_function
2023-09-08T19:59:31,440         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:35,584   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:35,585                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:35,586                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2023-09-08T19:59:35,586   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:35,587      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:35,588         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:35,588   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:35,589                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:35,590   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:35,590     117 |     struct unary_function
2023-09-08T19:59:35,591         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:39,798   In file included from ./base//sbml/UnitDefinition.h:280,
2023-09-08T19:59:39,798                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T19:59:39,799                    from ./base//sbml/validator/VConstraint.h:52,
2023-09-08T19:59:39,799                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2023-09-08T19:59:39,800   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:39,800      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:39,801         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:39,802   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:39,802                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T19:59:39,803                    from ./base//sbml/SBMLNamespaces.h:100,
2023-09-08T19:59:39,803                    from ./base//sbml/SBO.h:197,
2023-09-08T19:59:39,804                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2023-09-08T19:59:39,805   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:39,806     117 |     struct unary_function
2023-09-08T19:59:39,806         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:44,119   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:44,120                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:44,120                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2023-09-08T19:59:44,121   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:44,121      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:44,122         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:44,122   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:44,123                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:44,123   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:44,124     117 |     struct unary_function
2023-09-08T19:59:44,124         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:48,378   In file included from ./base//sbml/FunctionDefinition.h:148,
2023-09-08T19:59:48,379                    from ./base//sbml/Model.h:409,
2023-09-08T19:59:48,379                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2023-09-08T19:59:48,380   ./base//sbml/ListOf.h:78:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T19:59:48,380      78 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T19:59:48,381         |                           ^~~~~~~~~~~~~~
2023-09-08T19:59:48,382   In file included from /usr/include/c++/12/string:48,
2023-09-08T19:59:48,382                    from ./base//sbml/Model.h:407:
2023-09-08T19:59:48,383   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T19:59:48,383     117 |     struct unary_function
2023-09-08T19:59:48,384         |            ^~~~~~~~~~~~~~
2023-09-08T19:59:48,778   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T19:59:48,778   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T19:59:48,779     100 |   if (&(node) == NULL)
2023-09-08T19:59:48,780         |               ^
2023-09-08T19:59:48,781   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2023-09-08T19:59:48,781      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T19:59:48,782         |                                               ~~~~~~~~~~~~~~~^~~~
2023-09-08T19:59:49,263   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T19:59:49,263     100 |   if (&(node) == NULL)
2023-09-08T19:59:49,264         |   ^~
2023-09-08T20:00:02,803   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T20:00:02,804   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:02,804      90 |   if (&orig == NULL)
2023-09-08T20:00:02,805         |             ^
2023-09-08T20:00:02,806   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2023-09-08T20:00:02,806      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2023-09-08T20:00:02,807         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,811   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T20:00:02,811   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:02,812     110 |   if (&rhs == NULL)
2023-09-08T20:00:02,813         |            ^
2023-09-08T20:00:02,814   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2023-09-08T20:00:02,814     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2023-09-08T20:00:02,815         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:02,815   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:02,816   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,817     149 |   if (&name == NULL || &value == NULL
2023-09-08T20:00:02,817         |             ^
2023-09-08T20:00:02,818   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2023-09-08T20:00:02,818     144 | XMLAttributes::add (const std::string& name,
2023-09-08T20:00:02,819         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,819   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,820     149 |   if (&name == NULL || &value == NULL
2023-09-08T20:00:02,820         |                               ^
2023-09-08T20:00:02,821   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2023-09-08T20:00:02,821     145 |                     const std::string& value,
2023-09-08T20:00:02,822         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,822   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2023-09-08T20:00:02,823     150 |                     || &namespaceURI == NULL
2023-09-08T20:00:02,824         |                                      ^
2023-09-08T20:00:02,824   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2023-09-08T20:00:02,825     146 |                     const std::string& namespaceURI,
2023-09-08T20:00:02,826         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T20:00:02,826   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:02,827     151 |                     || &prefix == NULL)
2023-09-08T20:00:02,828         |                                ^
2023-09-08T20:00:02,828   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2023-09-08T20:00:02,829     147 |                     const std::string& prefix)
2023-09-08T20:00:02,830         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,831   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T20:00:02,831   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,832     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:02,832         |               ^
2023-09-08T20:00:02,833   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2023-09-08T20:00:02,834     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T20:00:02,834         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,835   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,836     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:02,837         |                                 ^
2023-09-08T20:00:02,837   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2023-09-08T20:00:02,838     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T20:00:02,839         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,840   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T20:00:02,840   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,841     279 |   if (&name == NULL) return -1;
2023-09-08T20:00:02,841         |             ^
2023-09-08T20:00:02,842   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2023-09-08T20:00:02,843     277 | XMLAttributes::getIndex (const std::string& name) const
2023-09-08T20:00:02,843         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,844   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T20:00:02,844   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,845     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T20:00:02,845         |             ^
2023-09-08T20:00:02,846   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2023-09-08T20:00:02,846     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T20:00:02,847         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,848   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:02,848     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T20:00:02,849         |                             ^
2023-09-08T20:00:02,849   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2023-09-08T20:00:02,850     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T20:00:02,851         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:02,851   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T20:00:02,852   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,853     318 |   if (&triple  == NULL) return -1;
2023-09-08T20:00:02,853         |                ^
2023-09-08T20:00:02,854   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2023-09-08T20:00:02,855     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2023-09-08T20:00:02,856         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,856   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,857   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,858     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T20:00:02,858         |                ^
2023-09-08T20:00:02,859   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2023-09-08T20:00:02,860     527 |                          , bool&        value
2023-09-08T20:00:02,860         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,861   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,862     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T20:00:02,862         |                                          ^
2023-09-08T20:00:02,863   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2023-09-08T20:00:02,863     526 |                          , const std::string& name
2023-09-08T20:00:02,864         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,865   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,865   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,866     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T20:00:02,866         |               ^
2023-09-08T20:00:02,867   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2023-09-08T20:00:02,867     609 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T20:00:02,868         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,869   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,869     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T20:00:02,870         |                                 ^
2023-09-08T20:00:02,870   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2023-09-08T20:00:02,871     610 |                          , bool&            value
2023-09-08T20:00:02,871         |                            ~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,872   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,873   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,873     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T20:00:02,874         |                 ^
2023-09-08T20:00:02,874   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2023-09-08T20:00:02,875     641 |                          , double&      value
2023-09-08T20:00:02,876         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,876   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,877     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T20:00:02,877         |                                          ^
2023-09-08T20:00:02,878   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2023-09-08T20:00:02,879     640 |                          , const std::string& name
2023-09-08T20:00:02,879         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,880   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,880   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,881     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T20:00:02,882         |                                     ^
2023-09-08T20:00:02,882   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2023-09-08T20:00:02,883     787 |                          , long&        value
2023-09-08T20:00:02,884         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,884   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,885     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T20:00:02,886         |                                          ^
2023-09-08T20:00:02,887   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2023-09-08T20:00:02,887     786 |                                            , const std::string& name
2023-09-08T20:00:02,888         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,889   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,889   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,890     854 |   if (&triple == NULL) return false;
2023-09-08T20:00:02,890         |               ^
2023-09-08T20:00:02,891   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2023-09-08T20:00:02,891     847 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T20:00:02,892         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,892   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,893   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,893     943 |   if (&triple == NULL) return false;
2023-09-08T20:00:02,894         |               ^
2023-09-08T20:00:02,894   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2023-09-08T20:00:02,895     936 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T20:00:02,896         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,896   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,897   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,897    1035 |   if (&triple == NULL) return false;
2023-09-08T20:00:02,898         |               ^
2023-09-08T20:00:02,898   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2023-09-08T20:00:02,899    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T20:00:02,900         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:02,900   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,901   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:02,902    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T20:00:02,903         |                              ^
2023-09-08T20:00:02,903   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2023-09-08T20:00:02,904    1081 |                          , std::string& value
2023-09-08T20:00:02,905         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:02,905   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:02,906    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T20:00:02,906         |                                                      ^
2023-09-08T20:00:02,907   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2023-09-08T20:00:02,908    1080 |                          , const std::string& name
2023-09-08T20:00:02,908         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:02,909   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:02,910   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:02,911    1125 |   if (&triple == NULL) return false;
2023-09-08T20:00:02,911         |               ^
2023-09-08T20:00:02,912   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2023-09-08T20:00:02,912    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T20:00:02,913         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:03,341   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T20:00:03,341   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,342     318 |   if (&triple  == NULL) return -1;
2023-09-08T20:00:03,342         |   ^~
2023-09-08T20:00:03,354   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T20:00:03,355   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,355     279 |   if (&name == NULL) return -1;
2023-09-08T20:00:03,356         |   ^~
2023-09-08T20:00:03,356   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T20:00:03,357   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,357     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T20:00:03,358         |             ^
2023-09-08T20:00:03,358   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,359     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T20:00:03,360         |                             ^
2023-09-08T20:00:03,374   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T20:00:03,374   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,375      90 |   if (&orig == NULL)
2023-09-08T20:00:03,376         |   ^~
2023-09-08T20:00:03,376   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T20:00:03,377   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,377     110 |   if (&rhs == NULL)
2023-09-08T20:00:03,378         |   ^~
2023-09-08T20:00:03,379   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:03,379   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,380     149 |   if (&name == NULL || &value == NULL
2023-09-08T20:00:03,381         |             ^
2023-09-08T20:00:03,381   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,382     149 |   if (&name == NULL || &value == NULL
2023-09-08T20:00:03,382         |                               ^
2023-09-08T20:00:03,383   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,384     150 |                     || &namespaceURI == NULL
2023-09-08T20:00:03,384         |                                      ^
2023-09-08T20:00:03,385   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,386     151 |                     || &prefix == NULL)
2023-09-08T20:00:03,386         |                                ^
2023-09-08T20:00:03,387   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T20:00:03,388   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,388     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:03,389         |               ^
2023-09-08T20:00:03,389   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,390     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:03,390         |                                 ^
2023-09-08T20:00:03,391   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,392   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,392     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T20:00:03,393         |                                 ^
2023-09-08T20:00:03,393   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,394     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T20:00:03,394         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:03,395   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,396   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,396     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T20:00:03,397         |               ^
2023-09-08T20:00:03,398   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,398     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T20:00:03,399         |                                 ^
2023-09-08T20:00:03,399   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,400   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,401     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T20:00:03,402         |                                 ^
2023-09-08T20:00:03,402   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,403     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T20:00:03,403         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:03,404   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,405   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,406     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T20:00:03,406         |                                 ^
2023-09-08T20:00:03,407   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,408     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T20:00:03,408         |                           ^
2023-09-08T20:00:03,409   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,410   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,410     854 |   if (&triple == NULL) return false;
2023-09-08T20:00:03,411         |   ^~
2023-09-08T20:00:03,412   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,412   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,413     943 |   if (&triple == NULL) return false;
2023-09-08T20:00:03,413         |   ^~
2023-09-08T20:00:03,414   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,414   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,415    1035 |   if (&triple == NULL) return false;
2023-09-08T20:00:03,415         |   ^~
2023-09-08T20:00:03,416   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,417   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,417    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T20:00:03,418         |                                                      ^
2023-09-08T20:00:03,418   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,419    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T20:00:03,419         |                              ^
2023-09-08T20:00:03,420   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T20:00:03,421   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:03,421    1125 |   if (&triple == NULL) return false;
2023-09-08T20:00:03,422         |   ^~
2023-09-08T20:00:11,284   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T20:00:11,285   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:11,286     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T20:00:11,286         |                       ^
2023-09-08T20:00:11,287   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:11,288     322 |                     , const std::string& details
2023-09-08T20:00:11,289         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:11,289   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:11,290     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T20:00:11,291         |                   ^
2023-09-08T20:00:11,291   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:11,292     322 |                     , const std::string& details
2023-09-08T20:00:11,293         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:11,294   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T20:00:11,294     403 |   if (&details == NULL)
2023-09-08T20:00:11,295         |                ^
2023-09-08T20:00:11,296   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T20:00:11,296     322 |                     , const std::string& details
2023-09-08T20:00:11,297         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:11,297   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T20:00:11,298   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:11,298     428 |   if (&orig == NULL)
2023-09-08T20:00:11,299         |             ^
2023-09-08T20:00:11,299   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2023-09-08T20:00:11,300     426 | XMLError::XMLError(const XMLError& orig)
2023-09-08T20:00:11,301         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:11,301   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T20:00:11,302   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:11,302     455 |   if (&rhs == NULL)
2023-09-08T20:00:11,303         |            ^
2023-09-08T20:00:11,303   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2023-09-08T20:00:11,304     453 | XMLError::operator=(const XMLError& rhs)
2023-09-08T20:00:11,305         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:11,715   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T20:00:11,716   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:11,716     428 |   if (&orig == NULL)
2023-09-08T20:00:11,717         |   ^~
2023-09-08T20:00:11,717   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T20:00:11,718   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:11,719     455 |   if (&rhs == NULL)
2023-09-08T20:00:11,720         |   ^~
2023-09-08T20:00:11,720   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T20:00:11,721   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:11,722     403 |   if (&details == NULL)
2023-09-08T20:00:11,722         |   ^~
2023-09-08T20:00:11,723   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:11,724     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T20:00:11,725         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:11,725   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:11,726     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T20:00:11,727         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:14,831   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T20:00:14,831      96 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T20:00:14,832         |                        ^~~~~~~~~~~~~~
2023-09-08T20:00:14,832   In file included from /usr/include/c++/12/functional:49,
2023-09-08T20:00:14,833                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2023-09-08T20:00:14,834   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T20:00:14,835     117 |     struct unary_function
2023-09-08T20:00:14,835         |            ^~~~~~~~~~~~~~
2023-09-08T20:00:14,838   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2023-09-08T20:00:14,838   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2023-09-08T20:00:14,839     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T20:00:14,839         |              ^
2023-09-08T20:00:14,840   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2023-09-08T20:00:14,840     118 | XMLErrorLog::add (const XMLError& error)
2023-09-08T20:00:14,841         |                   ~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:15,143   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:15,143     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T20:00:15,144         |   ^~
2023-09-08T20:00:17,144   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T20:00:17,145   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T20:00:17,145      57 |   if (&filename == NULL) return;
2023-09-08T20:00:17,146         |                 ^
2023-09-08T20:00:17,146   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2023-09-08T20:00:17,147      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2023-09-08T20:00:17,147         |                               ~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T20:00:17,341   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T20:00:17,342   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:17,342      57 |   if (&filename == NULL) return;
2023-09-08T20:00:17,343         |   ^~
2023-09-08T20:00:25,866   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:25,866   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:25,867      76 |   if (&orig == NULL)
2023-09-08T20:00:25,868         |             ^
2023-09-08T20:00:25,869   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2023-09-08T20:00:25,870      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2023-09-08T20:00:25,870         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:25,872   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T20:00:25,873   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:25,873      93 |   if (&rhs == NULL)
2023-09-08T20:00:25,874         |            ^
2023-09-08T20:00:25,875   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2023-09-08T20:00:25,876      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2023-09-08T20:00:25,876         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:25,877   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T20:00:25,878   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:25,878     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:25,879         |            ^
2023-09-08T20:00:25,880   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2023-09-08T20:00:25,881     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:25,881         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:25,882   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:25,883     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:25,883         |                               ^
2023-09-08T20:00:25,884   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2023-09-08T20:00:25,884     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:25,885         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:25,901   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T20:00:25,902   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:25,903     322 |   if (&prefix == NULL) return std::string();
2023-09-08T20:00:25,903         |               ^
2023-09-08T20:00:25,904   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2023-09-08T20:00:25,905     320 | XMLNamespaces::getURI (const std::string& prefix) const
2023-09-08T20:00:25,905         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:25,906   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T20:00:25,906   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:25,907     348 |   if (&uri == NULL) return false;
2023-09-08T20:00:25,908         |            ^
2023-09-08T20:00:25,908   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2023-09-08T20:00:25,909     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2023-09-08T20:00:25,910         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:25,911   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T20:00:25,911   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:25,912     359 |   if (&prefix == NULL) return false;
2023-09-08T20:00:25,913         |               ^
2023-09-08T20:00:25,914   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2023-09-08T20:00:25,914     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2023-09-08T20:00:25,915         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:25,916   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T20:00:25,916   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:25,917     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:25,918         |            ^
2023-09-08T20:00:25,918   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2023-09-08T20:00:25,919     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T20:00:25,920         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:25,920   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:25,921     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:25,922         |                               ^
2023-09-08T20:00:25,923   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2023-09-08T20:00:25,923     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T20:00:25,924         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:26,394   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T20:00:26,394   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,395     322 |   if (&prefix == NULL) return std::string();
2023-09-08T20:00:26,395         |   ^~
2023-09-08T20:00:26,396   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T20:00:26,397   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,397     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:26,398         |            ^
2023-09-08T20:00:26,398   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,399     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T20:00:26,399         |                               ^
2023-09-08T20:00:26,400   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T20:00:26,400   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,401     348 |   if (&uri == NULL) return false;
2023-09-08T20:00:26,401         |   ^~
2023-09-08T20:00:26,402   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T20:00:26,403   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,403     359 |   if (&prefix == NULL) return false;
2023-09-08T20:00:26,404         |   ^~
2023-09-08T20:00:26,406   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:26,406   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,407      76 |   if (&orig == NULL)
2023-09-08T20:00:26,407         |   ^~
2023-09-08T20:00:26,408   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T20:00:26,409   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,409      93 |   if (&rhs == NULL)
2023-09-08T20:00:26,410         |   ^~
2023-09-08T20:00:26,411   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T20:00:26,412   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,413     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:26,413         |            ^
2023-09-08T20:00:26,414   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:26,415     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:26,416         |                               ^
2023-09-08T20:00:30,840   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T20:00:30,841   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:30,842     197 |   if (&rhs == NULL)
2023-09-08T20:00:30,843         |            ^
2023-09-08T20:00:30,843   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2023-09-08T20:00:30,844     195 | XMLNode::operator=(const XMLNode& rhs)
2023-09-08T20:00:30,845         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:30,846   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T20:00:30,846   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T20:00:30,847     230 |   if (&(node) == NULL)
2023-09-08T20:00:30,847         |               ^
2023-09-08T20:00:30,848   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2023-09-08T20:00:30,848     226 | XMLNode::addChild (const XMLNode& node)
2023-09-08T20:00:30,849         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,850   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T20:00:30,850   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T20:00:30,851     267 |   if (&(node) == NULL)
2023-09-08T20:00:30,851         |               ^
2023-09-08T20:00:30,852   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2023-09-08T20:00:30,853     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2023-09-08T20:00:30,853         |                                       ~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,860   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T20:00:30,861   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:30,862     413 |   if (&name == NULL) return -1;
2023-09-08T20:00:30,862         |             ^
2023-09-08T20:00:30,863   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2023-09-08T20:00:30,863     411 | XMLNode::getIndex (const std::string& name) const
2023-09-08T20:00:30,864         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:30,865   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T20:00:30,866   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2023-09-08T20:00:30,866     435 |   if (&other == NULL) return false;
2023-09-08T20:00:30,867         |              ^
2023-09-08T20:00:30,868   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2023-09-08T20:00:30,868     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2023-09-08T20:00:30,869         |                 ~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:30,875   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T20:00:30,876   ./base/sbml/xml/XMLNode.cpp:505:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T20:00:30,877     505 |   if (&stream == NULL) return;
2023-09-08T20:00:30,877         |               ^
2023-09-08T20:00:30,878   ./base/sbml/xml/XMLNode.cpp:503:34: note: ‘stream’ declared here
2023-09-08T20:00:30,879     503 | XMLNode::write (XMLOutputStream& stream) const
2023-09-08T20:00:30,879         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:30,883   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T20:00:30,884   ./base/sbml/xml/XMLNode.cpp:575:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2023-09-08T20:00:30,885     575 |   if (&xmlstr == NULL) return NULL;
2023-09-08T20:00:30,885         |               ^
2023-09-08T20:00:30,886   ./base/sbml/xml/XMLNode.cpp:573:61: note: ‘xmlstr’ declared here
2023-09-08T20:00:30,887     573 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2023-09-08T20:00:30,888         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:31,435   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T20:00:31,435   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,436     413 |   if (&name == NULL) return -1;
2023-09-08T20:00:31,436         |   ^~
2023-09-08T20:00:31,437   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T20:00:31,437   ./base/sbml/xml/XMLNode.cpp:505:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,438     505 |   if (&stream == NULL) return;
2023-09-08T20:00:31,438         |   ^~
2023-09-08T20:00:31,458   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T20:00:31,458   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,459     197 |   if (&rhs == NULL)
2023-09-08T20:00:31,459         |   ^~
2023-09-08T20:00:31,463   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T20:00:31,464   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,464     230 |   if (&(node) == NULL)
2023-09-08T20:00:31,465         |   ^~
2023-09-08T20:00:31,465   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T20:00:31,466   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,467     267 |   if (&(node) == NULL)
2023-09-08T20:00:31,467         |   ^~
2023-09-08T20:00:31,469   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T20:00:31,470   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,470     435 |   if (&other == NULL) return false;
2023-09-08T20:00:31,471         |   ^~
2023-09-08T20:00:31,473   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T20:00:31,474   ./base/sbml/xml/XMLNode.cpp:575:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:31,475     575 |   if (&xmlstr == NULL) return NULL;
2023-09-08T20:00:31,475         |   ^~
2023-09-08T20:00:37,772   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T20:00:37,772   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T20:00:37,773     220 |   if (&stream == NULL)
2023-09-08T20:00:37,773         |               ^
2023-09-08T20:00:37,774   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2023-09-08T20:00:37,775     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2023-09-08T20:00:37,776         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,777   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T20:00:37,777   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,778     236 |   if(&name == NULL) return;
2023-09-08T20:00:37,779         |            ^
2023-09-08T20:00:37,780   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2023-09-08T20:00:37,780     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:37,781         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,784   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T20:00:37,785   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,785     270 |   if(&triple == NULL) return;
2023-09-08T20:00:37,786         |              ^
2023-09-08T20:00:37,786   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2023-09-08T20:00:37,787     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2023-09-08T20:00:37,788         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,791   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T20:00:37,792   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,792     313 |   if (&name == NULL) return;
2023-09-08T20:00:37,793         |             ^
2023-09-08T20:00:37,793   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2023-09-08T20:00:37,794     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:37,794         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,795   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T20:00:37,796   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,796     344 |   if (&triple == NULL) return;
2023-09-08T20:00:37,797         |               ^
2023-09-08T20:00:37,798   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2023-09-08T20:00:37,798     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2023-09-08T20:00:37,799         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,800   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T20:00:37,801   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,801     374 |   if (&name == NULL) return;
2023-09-08T20:00:37,802         |             ^
2023-09-08T20:00:37,803   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2023-09-08T20:00:37,803     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2023-09-08T20:00:37,804         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,805   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T20:00:37,806   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,807     409 |   if (&triple == NULL) return;
2023-09-08T20:00:37,807         |               ^
2023-09-08T20:00:37,808   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2023-09-08T20:00:37,809     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2023-09-08T20:00:37,809         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,811   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T20:00:37,812   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,812     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:37,813         |              ^
2023-09-08T20:00:37,814   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2023-09-08T20:00:37,814     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T20:00:37,815         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,815   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,816     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:37,816         |                                ^
2023-09-08T20:00:37,817   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2023-09-08T20:00:37,817     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T20:00:37,818         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,823   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T20:00:37,823   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,824     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,824         |             ^
2023-09-08T20:00:37,825   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2023-09-08T20:00:37,825     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T20:00:37,826         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,827   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,828     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,829         |                               ^
2023-09-08T20:00:37,829   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2023-09-08T20:00:37,830     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T20:00:37,831         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,832   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T20:00:37,833   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,833     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,834         |               ^
2023-09-08T20:00:37,834   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2023-09-08T20:00:37,835     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T20:00:37,836         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,836   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,837     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,838         |                                 ^
2023-09-08T20:00:37,838   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2023-09-08T20:00:37,839     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T20:00:37,840         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,840   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T20:00:37,841   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,842     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,843         |             ^
2023-09-08T20:00:37,843   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2023-09-08T20:00:37,844     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T20:00:37,844         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,844   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,845     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,845         |                               ^
2023-09-08T20:00:37,846   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2023-09-08T20:00:37,846     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T20:00:37,847         |                                                           ~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,847   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T20:00:37,848   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,848     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,849         |             ^
2023-09-08T20:00:37,849   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2023-09-08T20:00:37,850     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T20:00:37,851         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,852   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,852     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,853         |                               ^
2023-09-08T20:00:37,854   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2023-09-08T20:00:37,854     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T20:00:37,855         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,856   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T20:00:37,857   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,857     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,858         |             ^
2023-09-08T20:00:37,859   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2023-09-08T20:00:37,859     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T20:00:37,860         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,861   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,861     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,862         |                               ^
2023-09-08T20:00:37,863   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2023-09-08T20:00:37,863     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T20:00:37,864         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,865   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T20:00:37,866   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,866     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,867         |               ^
2023-09-08T20:00:37,867   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2023-09-08T20:00:37,868     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T20:00:37,868         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,869   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,869     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,870         |                                 ^
2023-09-08T20:00:37,870   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2023-09-08T20:00:37,871     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T20:00:37,871         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,872   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T20:00:37,872   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:37,873     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,873         |             ^
2023-09-08T20:00:37,874   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2023-09-08T20:00:37,875     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T20:00:37,876         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:37,876   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,877     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:37,877         |                               ^
2023-09-08T20:00:37,878   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2023-09-08T20:00:37,879     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T20:00:37,879         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:37,880   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T20:00:37,881   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:37,881     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,882         |               ^
2023-09-08T20:00:37,882   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2023-09-08T20:00:37,883     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2023-09-08T20:00:37,884         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:37,884   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T20:00:37,885     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:37,886         |                                 ^
2023-09-08T20:00:37,887   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2023-09-08T20:00:37,887     734 |                                  , const unsigned int&  value )
2023-09-08T20:00:37,888         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:38,354   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T20:00:38,355   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,356     236 |   if(&name == NULL) return;
2023-09-08T20:00:38,356         |   ^~
2023-09-08T20:00:38,357   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T20:00:38,357   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,357     313 |   if (&name == NULL) return;
2023-09-08T20:00:38,358         |   ^~
2023-09-08T20:00:38,358   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T20:00:38,359   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,359     374 |   if (&name == NULL) return;
2023-09-08T20:00:38,360         |   ^~
2023-09-08T20:00:38,360   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T20:00:38,361   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,361     270 |   if(&triple == NULL) return;
2023-09-08T20:00:38,362         |   ^~
2023-09-08T20:00:38,363   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T20:00:38,363   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,364     344 |   if (&triple == NULL) return;
2023-09-08T20:00:38,365         |   ^~
2023-09-08T20:00:38,366   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T20:00:38,366   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,367     409 |   if (&triple == NULL) return;
2023-09-08T20:00:38,368         |   ^~
2023-09-08T20:00:38,368   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T20:00:38,369   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,370     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,371         |               ^
2023-09-08T20:00:38,371   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,372     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,372         |                                 ^
2023-09-08T20:00:38,373   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T20:00:38,374   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,374     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,375         |               ^
2023-09-08T20:00:38,376   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,376     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,377         |                                 ^
2023-09-08T20:00:38,378   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T20:00:38,378   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,379     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,379         |               ^
2023-09-08T20:00:38,380   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,380     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T20:00:38,381         |                                 ^
2023-09-08T20:00:38,381   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T20:00:38,382   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,382     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:38,383         |              ^
2023-09-08T20:00:38,383   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,384     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T20:00:38,384         |                                ^
2023-09-08T20:00:38,385   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T20:00:38,385   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,386     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,386         |             ^
2023-09-08T20:00:38,387   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,388     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,388         |                               ^
2023-09-08T20:00:38,389   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T20:00:38,390   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,390     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,391         |             ^
2023-09-08T20:00:38,392   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,392     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,393         |                               ^
2023-09-08T20:00:38,394   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T20:00:38,394   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,395     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,396         |             ^
2023-09-08T20:00:38,396   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,397     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,398         |                               ^
2023-09-08T20:00:38,399   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T20:00:38,399   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,400     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,401         |             ^
2023-09-08T20:00:38,402   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,402     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,403         |                               ^
2023-09-08T20:00:38,404   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T20:00:38,404   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,405     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,405         |             ^
2023-09-08T20:00:38,406   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,406     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T20:00:38,407         |                               ^
2023-09-08T20:00:38,407   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T20:00:38,408   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:38,409     220 |   if (&stream == NULL)
2023-09-08T20:00:38,409         |   ^~
2023-09-08T20:00:45,087   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T20:00:45,088   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2023-09-08T20:00:45,089     132 |   if (&chars == NULL)
2023-09-08T20:00:45,089         |              ^
2023-09-08T20:00:45,090   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2023-09-08T20:00:45,091     123 | XMLToken::XMLToken (  const std::string&  chars
2023-09-08T20:00:45,092         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T20:00:45,093   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T20:00:45,094   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:45,095     156 |   if (&orig == NULL)
2023-09-08T20:00:45,096         |             ^
2023-09-08T20:00:45,097   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2023-09-08T20:00:45,097     154 | XMLToken::XMLToken(const XMLToken& orig)
2023-09-08T20:00:45,098         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:45,099   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T20:00:45,100   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:45,100     195 |   if (&rhs == NULL)
2023-09-08T20:00:45,101         |            ^
2023-09-08T20:00:45,102   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2023-09-08T20:00:45,102     193 | XMLToken::operator=(const XMLToken& rhs)
2023-09-08T20:00:45,103         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:45,104   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T20:00:45,104   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T20:00:45,105     312 |         if(&attributes == NULL)
2023-09-08T20:00:45,106         |                        ^
2023-09-08T20:00:45,107   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2023-09-08T20:00:45,108     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2023-09-08T20:00:45,108         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T20:00:45,109   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:45,110   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2023-09-08T20:00:45,111     783 |         if(&namespaces == NULL)
2023-09-08T20:00:45,111         |                        ^
2023-09-08T20:00:45,112   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2023-09-08T20:00:45,113     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2023-09-08T20:00:45,113         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T20:00:45,114   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T20:00:45,115   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:45,115     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:45,116         |            ^
2023-09-08T20:00:45,116   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2023-09-08T20:00:45,117     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:45,117         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:45,118   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:45,119     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:45,119         |                               ^
2023-09-08T20:00:45,120   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2023-09-08T20:00:45,121     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T20:00:45,121         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:45,122   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T20:00:45,123   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T20:00:45,124    1058 |         if(&triple == NULL)
2023-09-08T20:00:45,124         |                    ^
2023-09-08T20:00:45,125   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2023-09-08T20:00:45,126    1055 | XMLToken::setTriple(const XMLTriple& triple)
2023-09-08T20:00:45,127         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:45,402   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T20:00:45,403   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,403     312 |         if(&attributes == NULL)
2023-09-08T20:00:45,404         |         ^~
2023-09-08T20:00:45,404   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T20:00:45,405   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,406     783 |         if(&namespaces == NULL)
2023-09-08T20:00:45,406         |         ^~
2023-09-08T20:00:45,407   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T20:00:45,408   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,408     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:45,409         |            ^
2023-09-08T20:00:45,410   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,410     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T20:00:45,411         |                               ^
2023-09-08T20:00:45,412   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T20:00:45,412   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,413    1058 |         if(&triple == NULL)
2023-09-08T20:00:45,413         |         ^~
2023-09-08T20:00:45,424   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T20:00:45,425   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,425     132 |   if (&chars == NULL)
2023-09-08T20:00:45,426         |   ^~
2023-09-08T20:00:45,426   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T20:00:45,427   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,428     156 |   if (&orig == NULL)
2023-09-08T20:00:45,428         |   ^~
2023-09-08T20:00:45,429   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T20:00:45,429   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:45,430     195 |   if (&rhs == NULL)
2023-09-08T20:00:45,431         |   ^~
2023-09-08T20:00:46,272   ./base/sbml/xml/XMLToken.cpp: In function ‘int XMLToken_append(XMLToken_t*, const char*)’:
2023-09-08T20:00:46,272   ./base/sbml/xml/XMLToken.cpp:1367:25: warning: ‘this’ pointer is null [-Wnonnull]
2023-09-08T20:00:46,273    1367 |     return token->append(text);
2023-09-08T20:00:46,274         |            ~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:46,275   ./base/sbml/xml/XMLToken.cpp:245:1: note: in a call to non-static member function ‘int XMLToken::append(const std::string&)’
2023-09-08T20:00:46,275     245 | XMLToken::append (const std::string& chars)
2023-09-08T20:00:46,276         | ^~~~~~~~
2023-09-08T20:00:49,778   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T20:00:49,778   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T20:00:49,779     188 |   if (&element == NULL) return;
2023-09-08T20:00:49,779         |                ^
2023-09-08T20:00:49,780   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2023-09-08T20:00:49,781     186 | XMLTokenizer::startElement (const XMLToken& element)
2023-09-08T20:00:49,781         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:49,782   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T20:00:49,783   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T20:00:49,783     234 |   else if (&element != NULL)
2023-09-08T20:00:49,784         |                     ^
2023-09-08T20:00:49,785   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2023-09-08T20:00:49,785     220 | XMLTokenizer::endElement (const XMLToken& element)
2023-09-08T20:00:49,786         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:49,786   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T20:00:49,787   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2023-09-08T20:00:49,788     247 |   if (&data == NULL) return;
2023-09-08T20:00:49,789         |             ^
2023-09-08T20:00:49,789   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2023-09-08T20:00:49,790     245 | XMLTokenizer::characters (const XMLToken& data)
2023-09-08T20:00:49,790         |                           ~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:50,120   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T20:00:50,121   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:50,121     188 |   if (&element == NULL) return;
2023-09-08T20:00:50,122         |   ^~
2023-09-08T20:00:50,122   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T20:00:50,123   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:50,123     234 |   else if (&element != NULL)
2023-09-08T20:00:50,124         |        ^~
2023-09-08T20:00:50,124   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T20:00:50,125   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:50,125     247 |   if (&data == NULL) return;
2023-09-08T20:00:50,125         |   ^~
2023-09-08T20:00:53,103   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:53,104   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T20:00:53,104      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:53,105         |              ^
2023-09-08T20:00:53,106   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2023-09-08T20:00:53,107      58 | XMLTriple::XMLTriple (  const std::string&  name
2023-09-08T20:00:53,107         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:53,108   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T20:00:53,109      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:53,110         |                                ^
2023-09-08T20:00:53,110   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2023-09-08T20:00:53,111      59 |                       , const std::string&  uri
2023-09-08T20:00:53,112         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:53,113   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T20:00:53,113      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:53,114         |                                                     ^
2023-09-08T20:00:53,115   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2023-09-08T20:00:53,115      60 |                       , const std::string&  prefix )
2023-09-08T20:00:53,116         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T20:00:53,117   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T20:00:53,118   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2023-09-08T20:00:53,118      81 |   if (&triplet == NULL)
2023-09-08T20:00:53,119         |                ^
2023-09-08T20:00:53,120   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2023-09-08T20:00:53,121      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2023-09-08T20:00:53,121         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T20:00:53,122   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T20:00:53,123   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T20:00:53,124     117 |   if (&orig == NULL)
2023-09-08T20:00:53,124         |             ^
2023-09-08T20:00:53,125   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2023-09-08T20:00:53,125     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2023-09-08T20:00:53,126         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T20:00:53,126   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T20:00:53,127   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T20:00:53,128     136 |   if (&rhs == NULL)
2023-09-08T20:00:53,128         |            ^
2023-09-08T20:00:53,129   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2023-09-08T20:00:53,129     134 | XMLTriple::operator=(const XMLTriple& rhs)
2023-09-08T20:00:53,130         |                      ~~~~~~~~~~~~~~~~~^~~
2023-09-08T20:00:53,313   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T20:00:53,314   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:53,315      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T20:00:53,315         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T20:00:53,316   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T20:00:53,317   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:53,317     117 |   if (&orig == NULL)
2023-09-08T20:00:53,318         |   ^~
2023-09-08T20:00:53,319   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T20:00:53,319   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:53,320     136 |   if (&rhs == NULL)
2023-09-08T20:00:53,320         |   ^~
2023-09-08T20:00:53,321   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T20:00:53,322   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2023-09-08T20:00:53,323      81 |   if (&triplet == NULL)
2023-09-08T20:00:53,323         |   ^~
2023-09-08T20:01:02,072   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-08T20:01:02,072   !!

2023-09-08T20:01:02,073           ********************************************************************************
2023-09-08T20:01:02,074           Please avoid running ``setup.py`` directly.
2023-09-08T20:01:02,074           Instead, use pypa/build, pypa/installer or other
2023-09-08T20:01:02,075           standards-based tools.

2023-09-08T20:01:02,076           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-08T20:01:02,077           ********************************************************************************

2023-09-08T20:01:02,078   !!
2023-09-08T20:01:02,078     self.initialize_options()
2023-09-08T20:01:21,409   Building wheel for python-libsbml (setup.py): finished with status 'done'
2023-09-08T20:01:22,160   Created wheel for python-libsbml: filename=python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl size=32737543 sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3
2023-09-08T20:01:22,161   Stored in directory: /tmp/pip-ephem-wheel-cache-xazutb8c/wheels/cc/c8/c4/aed29a2de21da6ca1087a40158db12a33dfb08a8bd5cf957b0
2023-09-08T20:01:22,182 Successfully built python-libsbml
2023-09-08T20:01:23,078 Removed build tracker: '/tmp/pip-build-tracker-83pmwp8j'