2023-09-08T21:14:36,770 Created temporary directory: /tmp/pip-build-tracker-rgf3l5ay
2023-09-08T21:14:36,771 Initialized build tracking at /tmp/pip-build-tracker-rgf3l5ay
2023-09-08T21:14:36,772 Created build tracker: /tmp/pip-build-tracker-rgf3l5ay
2023-09-08T21:14:36,772 Entered build tracker: /tmp/pip-build-tracker-rgf3l5ay
2023-09-08T21:14:36,773 Created temporary directory: /tmp/pip-wheel-4mbcqftz
2023-09-08T21:14:36,776 Created temporary directory: /tmp/pip-ephem-wheel-cache-a6hafo9t
2023-09-08T21:14:36,797 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T21:14:36,801 2 location(s) to search for versions of scikit-bio:
2023-09-08T21:14:36,801 * https://pypi.org/simple/scikit-bio/
2023-09-08T21:14:36,801 * https://www.piwheels.org/simple/scikit-bio/
2023-09-08T21:14:36,802 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/
2023-09-08T21:14:36,802 Getting page https://pypi.org/simple/scikit-bio/
2023-09-08T21:14:36,804 Found index url https://pypi.org/simple/
2023-09-08T21:14:37,022 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json
2023-09-08T21:14:37,027   Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0
2023-09-08T21:14:37,028   Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1
2023-09-08T21:14:37,028   Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2
2023-09-08T21:14:37,029   Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3
2023-09-08T21:14:37,030   Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4
2023-09-08T21:14:37,031   Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5
2023-09-08T21:14:37,032   Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0
2023-09-08T21:14:37,032   Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1
2023-09-08T21:14:37,033   Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2
2023-09-08T21:14:37,034   Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3
2023-09-08T21:14:37,034   Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0
2023-09-08T21:14:37,035   Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1
2023-09-08T21:14:37,036   Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2
2023-09-08T21:14:37,036   Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0
2023-09-08T21:14:37,037   Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1
2023-09-08T21:14:37,038   Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2
2023-09-08T21:14:37,038   Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3
2023-09-08T21:14:37,039   Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4
2023-09-08T21:14:37,040   Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5
2023-09-08T21:14:37,040   Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6
2023-09-08T21:14:37,041   Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7
2023-09-08T21:14:37,041   Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8
2023-09-08T21:14:37,042   Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9
2023-09-08T21:14:37,043 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/
2023-09-08T21:14:37,043 Getting page https://www.piwheels.org/simple/scikit-bio/
2023-09-08T21:14:37,045 Found index url https://www.piwheels.org/simple/
2023-09-08T21:14:37,311 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html
2023-09-08T21:14:37,316   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,317   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,317   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,318   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,318   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,319   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,319   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,320   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,321   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,321   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,322   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,322   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,322   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,323   Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/)
2023-09-08T21:14:37,324 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/
2023-09-08T21:14:37,324 Skipping link: not a file: https://pypi.org/simple/scikit-bio/
2023-09-08T21:14:37,345 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates
2023-09-08T21:14:37,363 Collecting scikit-bio==0.4.2
2023-09-08T21:14:37,366   Created temporary directory: /tmp/pip-unpack-4wyz3c0b
2023-09-08T21:14:37,845   Downloading scikit-bio-0.4.2.tar.gz (8.1 MB)
2023-09-08T21:14:41,717   Added scikit-bio==0.4.2 from https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-rgf3l5ay'
2023-09-08T21:14:41,719   Running setup.py (path:/tmp/pip-wheel-4mbcqftz/scikit-bio_509e67660bbf47549c09a4e67d268421/setup.py) egg_info for package scikit-bio
2023-09-08T21:14:41,720   Created temporary directory: /tmp/pip-pip-egg-info-o5pcv8k6
2023-09-08T21:14:41,721   Preparing metadata (setup.py): started
2023-09-08T21:14:41,722   Running command python setup.py egg_info
2023-09-08T21:14:42,603   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-08T21:14:42,603   !!

2023-09-08T21:14:42,604           ********************************************************************************
2023-09-08T21:14:42,605           Requirements should be satisfied by a PEP 517 installer.
2023-09-08T21:14:42,605           If you are using pip, you can try `pip install --use-pep517`.
2023-09-08T21:14:42,606           ********************************************************************************

2023-09-08T21:14:42,607   !!
2023-09-08T21:14:42,608     dist.fetch_build_eggs(dist.setup_requires)
2023-09-08T21:14:42,787   running egg_info
2023-09-08T21:14:42,789   creating /tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info
2023-09-08T21:14:42,812   writing /tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info/PKG-INFO
2023-09-08T21:14:42,816   writing dependency_links to /tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info/dependency_links.txt
2023-09-08T21:14:42,818   writing requirements to /tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info/requires.txt
2023-09-08T21:14:42,819   writing top-level names to /tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info/top_level.txt
2023-09-08T21:14:42,820   writing manifest file '/tmp/pip-pip-egg-info-o5pcv8k6/scikit_bio.egg-info/SOURCES.txt'
2023-09-08T21:14:42,954   Traceback (most recent call last):
2023-09-08T21:14:42,955     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-08T21:14:42,955       from . import multiarray
2023-09-08T21:14:42,956     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-08T21:14:42,956       from . import overrides
2023-09-08T21:14:42,957     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-08T21:14:42,958       from numpy.core._multiarray_umath import (
2023-09-08T21:14:42,958   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T21:14:42,959   During handling of the above exception, another exception occurred:

2023-09-08T21:14:42,960   Traceback (most recent call last):
2023-09-08T21:14:42,960     File "<string>", line 2, in <module>
2023-09-08T21:14:42,961     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T21:14:42,961     File "/tmp/pip-wheel-4mbcqftz/scikit-bio_509e67660bbf47549c09a4e67d268421/setup.py", line 95, in <module>
2023-09-08T21:14:42,962       setup(name='scikit-bio',
2023-09-08T21:14:42,963     File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup
2023-09-08T21:14:42,963       return distutils.core.setup(**attrs)
2023-09-08T21:14:42,964              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:42,964     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup
2023-09-08T21:14:42,965       return run_commands(dist)
2023-09-08T21:14:42,965              ^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:42,966     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-09-08T21:14:42,966       dist.run_commands()
2023-09-08T21:14:42,967     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-09-08T21:14:42,968       self.run_command(cmd)
2023-09-08T21:14:42,968     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-08T21:14:42,969       super().run_command(command)
2023-09-08T21:14:42,969     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-08T21:14:42,970       cmd_obj.run()
2023-09-08T21:14:42,970     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 318, in run
2023-09-08T21:14:42,971       self.find_sources()
2023-09-08T21:14:42,972     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 326, in find_sources
2023-09-08T21:14:42,973       mm.run()
2023-09-08T21:14:42,974     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 548, in run
2023-09-08T21:14:42,974       self.add_defaults()
2023-09-08T21:14:42,975     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/egg_info.py", line 586, in add_defaults
2023-09-08T21:14:42,976       sdist.add_defaults(self)
2023-09-08T21:14:42,986     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/sdist.py", line 113, in add_defaults
2023-09-08T21:14:42,987       super().add_defaults()
2023-09-08T21:14:42,987     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
2023-09-08T21:14:42,988       self._add_defaults_ext()
2023-09-08T21:14:42,989     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
2023-09-08T21:14:42,989       build_ext = self.get_finalized_command('build_ext')
2023-09-08T21:14:42,990                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:42,991     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
2023-09-08T21:14:42,992       cmd_obj.ensure_finalized()
2023-09-08T21:14:42,992     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
2023-09-08T21:14:42,993       self.finalize_options()
2023-09-08T21:14:42,994     File "/tmp/pip-wheel-4mbcqftz/scikit-bio_509e67660bbf47549c09a4e67d268421/setup.py", line 28, in finalize_options
2023-09-08T21:14:42,994       import numpy
2023-09-08T21:14:42,995     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-08T21:14:42,996       from . import core
2023-09-08T21:14:42,996     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-08T21:14:42,997       raise ImportError(msg)
2023-09-08T21:14:42,998   ImportError:

2023-09-08T21:14:43,000   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-08T21:14:43,001   Importing the numpy C-extensions failed. This error can happen for
2023-09-08T21:14:43,002   many reasons, often due to issues with your setup or how NumPy was
2023-09-08T21:14:43,003   installed.

2023-09-08T21:14:43,004   We have compiled some common reasons and troubleshooting tips at:

2023-09-08T21:14:43,006       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-08T21:14:43,007   Please note and check the following:

2023-09-08T21:14:43,009     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-08T21:14:43,010     * The NumPy version is: "1.25.2"

2023-09-08T21:14:43,011   and make sure that they are the versions you expect.
2023-09-08T21:14:43,012   Please carefully study the documentation linked above for further help.

2023-09-08T21:14:43,014   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T21:14:43,090   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T21:14:43,103   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T21:14:43,103   exec(compile('"'"''"'"''"'"'
2023-09-08T21:14:43,103   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T21:14:43,103   #
2023-09-08T21:14:43,103   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T21:14:43,103   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T21:14:43,103   # - It provides a clear error message when setuptools is not installed.
2023-09-08T21:14:43,103   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T21:14:43,103   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T21:14:43,103   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T21:14:43,103   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T21:14:43,103   import os, sys, tokenize
2023-09-08T21:14:43,103   
2023-09-08T21:14:43,103   try:
2023-09-08T21:14:43,103       import setuptools
2023-09-08T21:14:43,103   except ImportError as error:
2023-09-08T21:14:43,103       print(
2023-09-08T21:14:43,103           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T21:14:43,103           "the build environment.",
2023-09-08T21:14:43,103           file=sys.stderr,
2023-09-08T21:14:43,103       )
2023-09-08T21:14:43,103       sys.exit(1)
2023-09-08T21:14:43,103   
2023-09-08T21:14:43,103   __file__ = %r
2023-09-08T21:14:43,103   sys.argv[0] = __file__
2023-09-08T21:14:43,103   
2023-09-08T21:14:43,103   if os.path.exists(__file__):
2023-09-08T21:14:43,103       filename = __file__
2023-09-08T21:14:43,103       with tokenize.open(__file__) as f:
2023-09-08T21:14:43,103           setup_py_code = f.read()
2023-09-08T21:14:43,103   else:
2023-09-08T21:14:43,103       filename = "<auto-generated setuptools caller>"
2023-09-08T21:14:43,103       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T21:14:43,103   
2023-09-08T21:14:43,103   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T21:14:43,103   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-4mbcqftz/scikit-bio_509e67660bbf47549c09a4e67d268421/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-o5pcv8k6[/]
2023-09-08T21:14:43,103   [bold magenta]cwd[/]: /tmp/pip-wheel-4mbcqftz/scikit-bio_509e67660bbf47549c09a4e67d268421/
2023-09-08T21:14:43,104   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T21:14:43,105 ERROR: [present-rich] metadata generation failed
2023-09-08T21:14:43,111 Exception information:
2023-09-08T21:14:43,111 Traceback (most recent call last):
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T21:14:43,111     call_subprocess(
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T21:14:43,111     raise error
2023-09-08T21:14:43,111 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T21:14:43,111 
2023-09-08T21:14:43,111 The above exception was the direct cause of the following exception:
2023-09-08T21:14:43,111 
2023-09-08T21:14:43,111 Traceback (most recent call last):
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T21:14:43,111     status = run_func(*args)
2023-09-08T21:14:43,111              ^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T21:14:43,111     return func(self, options, args)
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T21:14:43,111     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T21:14:43,111                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T21:14:43,111     result = self._result = resolver.resolve(
2023-09-08T21:14:43,111                             ^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T21:14:43,111     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T21:14:43,111             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T21:14:43,111     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T21:14:43,111     if not criterion.candidates:
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T21:14:43,111     return bool(self._sequence)
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T21:14:43,111     return any(self)
2023-09-08T21:14:43,111            ^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T21:14:43,111     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T21:14:43,111     candidate = func()
2023-09-08T21:14:43,111                 ^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T21:14:43,111     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T21:14:43,111                                        ^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T21:14:43,111     super().__init__(
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T21:14:43,111     self.dist = self._prepare()
2023-09-08T21:14:43,111                 ^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T21:14:43,111     dist = self._prepare_distribution()
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T21:14:43,111     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T21:14:43,111     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T21:14:43,111     dist = _get_prepared_distribution(
2023-09-08T21:14:43,111            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T21:14:43,111     abstract_dist.prepare_distribution_metadata(
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T21:14:43,111     self.req.prepare_metadata()
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T21:14:43,111     self.metadata_directory = generate_metadata_legacy(
2023-09-08T21:14:43,111                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T21:14:43,111   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T21:14:43,111     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T21:14:43,111 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T21:14:43,123 Removed scikit-bio==0.4.2 from https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-rgf3l5ay'
2023-09-08T21:14:43,124 Removed build tracker: '/tmp/pip-build-tracker-rgf3l5ay'