2023-09-08T21:05:52,219 Created temporary directory: /tmp/pip-build-tracker-j5pnpz5c
2023-09-08T21:05:52,220 Initialized build tracking at /tmp/pip-build-tracker-j5pnpz5c
2023-09-08T21:05:52,220 Created build tracker: /tmp/pip-build-tracker-j5pnpz5c
2023-09-08T21:05:52,221 Entered build tracker: /tmp/pip-build-tracker-j5pnpz5c
2023-09-08T21:05:52,221 Created temporary directory: /tmp/pip-wheel-ch0xynwd
2023-09-08T21:05:52,224 Created temporary directory: /tmp/pip-ephem-wheel-cache-kyxsfegb
2023-09-08T21:05:52,249 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T21:05:52,253 2 location(s) to search for versions of python-libsbml:
2023-09-08T21:05:52,253 * https://pypi.org/simple/python-libsbml/
2023-09-08T21:05:52,253 * https://www.piwheels.org/simple/python-libsbml/
2023-09-08T21:05:52,253 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2023-09-08T21:05:52,254 Getting page https://pypi.org/simple/python-libsbml/
2023-09-08T21:05:52,256 Found index url https://pypi.org/simple/
2023-09-08T21:05:52,446 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2023-09-08T21:05:52,530   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2023-09-08T21:05:52,531   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2023-09-08T21:05:52,532   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2023-09-08T21:05:52,533   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2023-09-08T21:05:52,533   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2023-09-08T21:05:52,534   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,535   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2023-09-08T21:05:52,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,553   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,557   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,557   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,558   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,559   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,559   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,560   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2023-09-08T21:05:52,561   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,561   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,562   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2023-09-08T21:05:52,563   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,563   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,564   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,564   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,565   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,565   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,566   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,567   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,567   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,568   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,568   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,569   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,570   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,570   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,571   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,571   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,572   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,572   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,573   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,573   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,574   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,575   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,576   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,576   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,577   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,578   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,578   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,579   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2023-09-08T21:05:52,579   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,580   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,580   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,581   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,582   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,582   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,583   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,584   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,584   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,585   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,585   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,586   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,587   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,588   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,588   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,589   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,589   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,590   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,590   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,591   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,592   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,592   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,593   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,594   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2023-09-08T21:05:52,594   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,595   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,596   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,596   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,597   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,597   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,598   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,599   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,599   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,600   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,600   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,601   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,602   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,602   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,603   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,604   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,605   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,605   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,606   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,606   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,607   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,607   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2023-09-08T21:05:52,608   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,608   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,609   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,609   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,610   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,611   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,611   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,612   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,613   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,614   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,614   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,615   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,615   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,616   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,616   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,617   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,617   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,618   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,619   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,619   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,620   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,621   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,621   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,622   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,623   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,623   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,624   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,624   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,625   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,625   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,626   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,627   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,627   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,628   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,629   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,629   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,630   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,631   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,631   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,632   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,632   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2023-09-08T21:05:52,633   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,633   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,634   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,634   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,635   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,636   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,637   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,637   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,638   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,638   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,639   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,640   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,641   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,641   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,642   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,642   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,643   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,643   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,644   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,644   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,645   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,646   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,646   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,647   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,648   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,648   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,649   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,649   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,650   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,650   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,651   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,652   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2023-09-08T21:05:52,653   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,653   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,654   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,655   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,656   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,656   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,657   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,658   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,658   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,659   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,659   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,660   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,660   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,661   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,661   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,662   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,663   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,663   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,664   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,665   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,665   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,666   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,667   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,667   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,668   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,668   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,669   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,669   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,670   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,671   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,671   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,672   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,673   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,673   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,674   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,675   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,675   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,676   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,676   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,677   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,678   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,678   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,679   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,680   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,680   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,681   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,682   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,682   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,683   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,684   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,684   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,685   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,685   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,686   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,686   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,687   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,688   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,688   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,689   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,690   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,690   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,691   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,692   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,692   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,693   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,693   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,694   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,694   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,695   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,695   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,696   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,697   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,698   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,698   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,699   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,699   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,700   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,701   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,701   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,702   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,702   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,703   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,703   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,704   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,705   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,705   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,706   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,707   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,707   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,708   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,709   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,709   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,710   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,710   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,711   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,711   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,712   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,712   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,713   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,714   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,714   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,715   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,716   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,716   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,717   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,718   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,718   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,719   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,719   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,720   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,721   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,721   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,722   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,723   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,723   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,724   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,725   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,726   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,726   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,726   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,727   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,727   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,728   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,729   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,729   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,730   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,731   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,731   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,732   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,733   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,733   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,734   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,735   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,735   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,736   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,736   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,737   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,737   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,738   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,739   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,739   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,740   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,741   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,741   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,742   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,743   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,743   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,744   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,744   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,745   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,745   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,746   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,746   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,747   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,748   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2023-09-08T21:05:52,749   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,749   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,750   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,751   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,751   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,752   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,752   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,753   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,753   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,754   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,754   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,755   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,756   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,757   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,757   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,758   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,758   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,759   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,760   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,761   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,761   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,762   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,762   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,763   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,763   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,764   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,765   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,765   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,766   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,767   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,767   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,768   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,769   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,769   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,770   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,770   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,771   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,771   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,772   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,772   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,773   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,774   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,774   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,775   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,776   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,777   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,777   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,778   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,778   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2023-09-08T21:05:52,779   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,779   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,780   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,781   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,781   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,782   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,783   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,783   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,784   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,784   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,785   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,786   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,786   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,787   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,787   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,788   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,788   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,789   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,790   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,790   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,791   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,794   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,795   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,796   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,797   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,798   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,799   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,800   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,801   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,802   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,803   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,804   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,805   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,806   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,807   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,808   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,808   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2023-09-08T21:05:52,809   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,810   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,811   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,812   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,813   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,814   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,815   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,816   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,817   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,818   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,819   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,820   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,821   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,822   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,823   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,824   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,825   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,826   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,827   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,828   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,829   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,830   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,831   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,832   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,833   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,834   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,835   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,836   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,837   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,838   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T21:05:52,839 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T21:05:52,839 Getting page https://www.piwheels.org/simple/python-libsbml/
2023-09-08T21:05:52,841 Found index url https://www.piwheels.org/simple/
2023-09-08T21:05:57,418 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2023-09-08T21:05:57,466   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,467   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,468   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,469   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,469   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,470   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,471   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,472   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,473   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,473   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,474   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,475   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,475   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,476   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,477   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,478   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,478   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,479   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,480   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,481   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,482   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,482   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,483   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,484   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,484   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,485   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,486   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,487   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,488   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,488   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,489   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,490   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,491   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,492   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,492   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,493   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,494   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,494   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,495   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,496   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,496   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv7l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,497   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp311-cp311-linux_armv6l.whl#sha256=93a6571240f99b13eafd5f02f6e4c1c448b5888903e12845d70ea8192246396a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,498   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,499   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,500   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,500   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,501   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,502   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,503   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,503   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,504   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,505   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,505   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,506   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,507   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,508   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp311-cp311-linux_armv6l.whl#sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,508   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,509   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,510   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,510   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,511   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,512   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,513   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv7l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,513   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp311-cp311-linux_armv6l.whl#sha256=7c898fa7bd5ffb739abb831838efe233b0b16e40a2b2da0d5a5671c8f3811d66 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,514   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,515   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,515   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,516   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,517   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,517   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,518   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv7l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,519   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp311-cp311-linux_armv6l.whl#sha256=e0764c8ee3671fea54e70205346ccbdc77d3f93a0d574f3b8ac5eae978ee10a3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,520   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,520   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,521   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,522   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,523   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,523   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T21:05:57,524 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T21:05:57,524 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2023-09-08T21:05:57,557 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2023-09-08T21:05:57,578 Collecting python-libsbml==5.11.0
2023-09-08T21:05:57,580   Created temporary directory: /tmp/pip-unpack-hm1mzh11
2023-09-08T21:05:57,737   Downloading python-libsbml-5.11.0.tar.gz (3.6 MB)
2023-09-08T21:06:01,094   Added python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-j5pnpz5c'
2023-09-08T21:06:01,096   Running setup.py (path:/tmp/pip-wheel-ch0xynwd/python-libsbml_c7be1f1131b84c4a8492394158d197d5/setup.py) egg_info for package python-libsbml
2023-09-08T21:06:01,097   Created temporary directory: /tmp/pip-pip-egg-info-pcr838n1
2023-09-08T21:06:01,098   Preparing metadata (setup.py): started
2023-09-08T21:06:01,099   Running command python setup.py egg_info
2023-09-08T21:06:02,405   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T21:06:02,408   Source in /tmp/pip-wheel-ch0xynwd/python-libsbml_c7be1f1131b84c4a8492394158d197d5 has version 5.11.0, which satisfies requirement python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz
2023-09-08T21:06:02,409   Removed python-libsbml==5.11.0 from https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-j5pnpz5c'
2023-09-08T21:06:02,413 Created temporary directory: /tmp/pip-unpack-lx_6lxh8
2023-09-08T21:06:02,414 Created temporary directory: /tmp/pip-unpack-qmtww626
2023-09-08T21:06:02,417 Building wheels for collected packages: python-libsbml
2023-09-08T21:06:02,421   Created temporary directory: /tmp/pip-wheel-lmo2okum
2023-09-08T21:06:02,421   Building wheel for python-libsbml (setup.py): started
2023-09-08T21:06:02,423   Destination directory: /tmp/pip-wheel-lmo2okum
2023-09-08T21:06:02,423   Running command python setup.py bdist_wheel
2023-09-08T21:06:08,072   ./base/libsbml_wrap.cpp:3179:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:08,073    3179 |     UnknownExceptionHandler(std::unexpected_handler nh = handler) {
2023-09-08T21:06:08,074         |                                                                 ^
2023-09-08T21:06:08,080   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2023-09-08T21:06:08,081   ./base/libsbml_wrap.cpp:3180:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:08,082    3180 |       old = std::set_unexpected(nh);
2023-09-08T21:06:08,082         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:06:08,083   In file included from /usr/include/c++/12/ios:39,
2023-09-08T21:06:08,083                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:06:08,084                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:06:08,084                    from ./base/libsbml_wrap.cpp:2949:
2023-09-08T21:06:08,085   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T21:06:08,085      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T21:06:08,086         |                      ^~~~~~~~~~~~~~
2023-09-08T21:06:08,087   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2023-09-08T21:06:08,087   ./base/libsbml_wrap.cpp:3184:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:08,088    3184 |       std::set_unexpected(old);
2023-09-08T21:06:08,088         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:06:08,089   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T21:06:08,089      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T21:06:08,090         |                      ^~~~~~~~~~~~~~
2023-09-08T21:06:08,903   In file included from ./base/libsbml.h:45,
2023-09-08T21:06:08,904                    from ./base/libsbml_wrap.cpp:3748:
2023-09-08T21:06:08,905   ./base//sbml/ListOf.h: At global scope:
2023-09-08T21:06:08,906   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:08,906      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:06:08,907         |                           ^~~~~~~~~~~~~~
2023-09-08T21:06:08,908   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:06:08,909                    from ./base/libsbml_wrap.cpp:2948:
2023-09-08T21:06:08,909   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:06:08,910     117 |     struct unary_function
2023-09-08T21:06:08,911         |            ^~~~~~~~~~~~~~
2023-09-08T21:06:09,743   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:06:09,744                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:06:09,745                    from ./base/../swig/fbc-package.h:31,
2023-09-08T21:06:09,745                    from ./base/../swig/libsbml-packages.h:4,
2023-09-08T21:06:09,746                    from ./base/libsbml_wrap.cpp:3752:
2023-09-08T21:06:09,747   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:09,747     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:06:09,748         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:06:09,749   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:06:09,749     117 |     struct unary_function
2023-09-08T21:06:09,750         |            ^~~~~~~~~~~~~~
2023-09-08T21:06:09,753   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:09,754     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:06:09,755         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:06:09,755   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:06:09,756     117 |     struct unary_function
2023-09-08T21:06:09,756         |            ^~~~~~~~~~~~~~
2023-09-08T21:06:09,773   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:06:09,774   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:09,774     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:06:09,775         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:06:09,775   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:06:09,776     117 |     struct unary_function
2023-09-08T21:06:09,776         |            ^~~~~~~~~~~~~~
2023-09-08T21:06:10,025   ./base/libsbml_wrap.cpp:4675:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:10,026    4675 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2023-09-08T21:06:10,026         |                                    ^~~~~~~~~~~~~~~
2023-09-08T21:06:10,027   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T21:06:10,027     131 |     struct binary_function
2023-09-08T21:06:10,028         |            ^~~~~~~~~~~~~~~
2023-09-08T21:06:10,029   ./base/libsbml_wrap.cpp:4700:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:10,030    4700 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2023-09-08T21:06:10,030         |                                                ^~~~~~~~~~~~~~~
2023-09-08T21:06:10,031   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T21:06:10,032     131 |     struct binary_function
2023-09-08T21:06:10,032         |            ^~~~~~~~~~~~~~~
2023-09-08T21:06:10,033   ./base/libsbml_wrap.cpp:4710:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:06:10,034    4710 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2023-09-08T21:06:10,035         |                                                ^~~~~~~~~~~~~~~
2023-09-08T21:06:10,035   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T21:06:10,036     131 |     struct binary_function
2023-09-08T21:06:10,037         |            ^~~~~~~~~~~~~~~
2023-09-08T21:11:51,609   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:11:51,610                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:11:51,611                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:11:51,611                    from ./base/sbml/AlgebraicRule.cpp:49:
2023-09-08T21:11:51,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:11:51,613      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:11:51,613         |                           ^~~~~~~~~~~~~~
2023-09-08T21:11:51,614   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:11:51,615                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:11:51,615                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:11:51,616                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:11:51,617                    from ./base/sbml/AlgebraicRule.cpp:34:
2023-09-08T21:11:51,618   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:11:51,618     117 |     struct unary_function
2023-09-08T21:11:51,619         |            ^~~~~~~~~~~~~~
2023-09-08T21:11:51,904   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2023-09-08T21:11:51,905   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:11:51,906     163 |   catch (SBMLConstructorException)
2023-09-08T21:11:51,906         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:11:51,907   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:11:51,908   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:11:51,908     179 |   catch (SBMLConstructorException)
2023-09-08T21:11:51,909         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:11:55,851   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:11:55,851                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:11:55,852                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:11:55,853                    from ./base/sbml/AssignmentRule.cpp:49:
2023-09-08T21:11:55,853   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:11:55,854      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:11:55,855         |                           ^~~~~~~~~~~~~~
2023-09-08T21:11:55,855   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:11:55,856                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:11:55,857                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:11:55,857                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:11:55,858                    from ./base/sbml/AssignmentRule.cpp:34:
2023-09-08T21:11:55,858   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:11:55,859     117 |     struct unary_function
2023-09-08T21:11:55,860         |            ^~~~~~~~~~~~~~
2023-09-08T21:11:56,151   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2023-09-08T21:11:56,152   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:11:56,153     154 |   catch (SBMLConstructorException)
2023-09-08T21:11:56,153         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:11:56,154   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:11:56,155   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:11:56,155     170 |   catch (SBMLConstructorException)
2023-09-08T21:11:56,156         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:00,186   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:00,186                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:00,187                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:00,188                    from ./base/sbml/Compartment.cpp:41:
2023-09-08T21:12:00,189   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:00,189      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:00,190         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:00,191   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:00,192                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:00,192                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:00,193                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:00,193                    from ./base/sbml/Compartment.cpp:35:
2023-09-08T21:12:00,194   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:00,194     117 |     struct unary_function
2023-09-08T21:12:00,195         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:00,485   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T21:12:00,486   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:00,486     146 |   if (&orig == NULL)
2023-09-08T21:12:00,487         |             ^
2023-09-08T21:12:00,488   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2023-09-08T21:12:00,488     143 | Compartment::Compartment(const Compartment& orig) :
2023-09-08T21:12:00,489         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:00,489   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T21:12:00,490   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:00,490     175 |   if (&rhs == NULL)
2023-09-08T21:12:00,491         |            ^
2023-09-08T21:12:00,492   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2023-09-08T21:12:00,492     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2023-09-08T21:12:00,493         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,497   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T21:12:00,497   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,498     496 |   if (&(sid) == NULL)
2023-09-08T21:12:00,499         |              ^
2023-09-08T21:12:00,499   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2023-09-08T21:12:00,500     485 | Compartment::setId (const std::string& sid)
2023-09-08T21:12:00,501         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,502   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T21:12:00,502   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:12:00,503     521 |   if (&(name) == NULL)
2023-09-08T21:12:00,504         |               ^
2023-09-08T21:12:00,504   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2023-09-08T21:12:00,505     516 | Compartment::setName (const std::string& name)
2023-09-08T21:12:00,506         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:00,506   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T21:12:00,507   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,508     551 |   if (&(sid) == NULL)
2023-09-08T21:12:00,508         |              ^
2023-09-08T21:12:00,509   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2023-09-08T21:12:00,510     549 | Compartment::setCompartmentType (const std::string& sid)
2023-09-08T21:12:00,510         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,511   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T21:12:00,512   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,513     673 |   if (&(sid) == NULL)
2023-09-08T21:12:00,514         |              ^
2023-09-08T21:12:00,514   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2023-09-08T21:12:00,515     671 | Compartment::setUnits (const std::string& sid)
2023-09-08T21:12:00,515         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,516   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T21:12:00,517   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,517     695 |   if (&(sid) == NULL)
2023-09-08T21:12:00,518         |              ^
2023-09-08T21:12:00,518   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2023-09-08T21:12:00,519     693 | Compartment::setOutside (const std::string& sid)
2023-09-08T21:12:00,519         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,556   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T21:12:00,557   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,558    1534 |   if (&(sid) == NULL)
2023-09-08T21:12:00,558         |              ^
2023-09-08T21:12:00,559   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2023-09-08T21:12:00,559    1530 | ListOfCompartments::get (const std::string& sid) const
2023-09-08T21:12:00,560         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,562   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T21:12:00,562   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:00,563    1562 |   if (&(sid) != NULL)
2023-09-08T21:12:00,563         |              ^
2023-09-08T21:12:00,564   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2023-09-08T21:12:00,565    1557 | ListOfCompartments::remove (const std::string& sid)
2023-09-08T21:12:00,565         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:00,570   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2023-09-08T21:12:00,570   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:00,571    1640 |   catch (SBMLConstructorException)
2023-09-08T21:12:00,575         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:00,575   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:00,576   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:00,577    1656 |   catch (SBMLConstructorException)
2023-09-08T21:12:00,577         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:01,171   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T21:12:01,172   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,173     146 |   if (&orig == NULL)
2023-09-08T21:12:01,173         |   ^~
2023-09-08T21:12:01,174   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T21:12:01,175   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,175     175 |   if (&rhs == NULL)
2023-09-08T21:12:01,176         |   ^~
2023-09-08T21:12:01,177   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T21:12:01,178   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,179     496 |   if (&(sid) == NULL)
2023-09-08T21:12:01,179         |   ^~
2023-09-08T21:12:01,180   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T21:12:01,180   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,181     521 |   if (&(name) == NULL)
2023-09-08T21:12:01,181         |   ^~
2023-09-08T21:12:01,182   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T21:12:01,182   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,183     551 |   if (&(sid) == NULL)
2023-09-08T21:12:01,183         |   ^~
2023-09-08T21:12:01,184   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T21:12:01,184   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,185     673 |   if (&(sid) == NULL)
2023-09-08T21:12:01,185         |   ^~
2023-09-08T21:12:01,186   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T21:12:01,186   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,187     695 |   if (&(sid) == NULL)
2023-09-08T21:12:01,187         |   ^~
2023-09-08T21:12:01,188   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T21:12:01,189   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,190    1534 |   if (&(sid) == NULL)
2023-09-08T21:12:01,190         |   ^~
2023-09-08T21:12:01,191   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T21:12:01,192   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:01,193    1562 |   if (&(sid) != NULL)
2023-09-08T21:12:01,193         |   ^~
2023-09-08T21:12:09,122   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:09,123                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:09,124                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:09,125                    from ./base/sbml/CompartmentType.cpp:40:
2023-09-08T21:12:09,126   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:09,127      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:09,128         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:09,129   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:09,130                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:09,130                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:09,131                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:09,131                    from ./base/sbml/CompartmentType.cpp:33:
2023-09-08T21:12:09,132   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:09,133     117 |     struct unary_function
2023-09-08T21:12:09,134         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:09,420   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T21:12:09,421   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:09,422      92 |   if (&orig == NULL)
2023-09-08T21:12:09,423         |             ^
2023-09-08T21:12:09,424   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2023-09-08T21:12:09,425      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2023-09-08T21:12:09,426         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:09,427   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T21:12:09,428   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:09,429     110 |   if (&rhs == NULL)
2023-09-08T21:12:09,430         |            ^
2023-09-08T21:12:09,431   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2023-09-08T21:12:09,432     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2023-09-08T21:12:09,433         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:09,434   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T21:12:09,435   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:09,436     207 |   if (&(sid) == NULL)
2023-09-08T21:12:09,437         |              ^
2023-09-08T21:12:09,438   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2023-09-08T21:12:09,439     196 | CompartmentType::setId (const std::string& sid)
2023-09-08T21:12:09,440         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:09,441   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T21:12:09,442   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:12:09,443     232 |   if (&(name) == NULL)
2023-09-08T21:12:09,444         |               ^
2023-09-08T21:12:09,445   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2023-09-08T21:12:09,446     227 | CompartmentType::setName (const std::string& name)
2023-09-08T21:12:09,447         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:09,449   ./base/sbml/CompartmentType.cpp: At global scope:
2023-09-08T21:12:09,450   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:09,451     543 | struct IdEqCT : public unary_function<SBase*, bool>
2023-09-08T21:12:09,452         |                        ^~~~~~~~~~~~~~
2023-09-08T21:12:09,453   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:09,454     117 |     struct unary_function
2023-09-08T21:12:09,455         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:09,456   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T21:12:09,458   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:09,459     568 |   if (&(sid) == NULL)
2023-09-08T21:12:09,460         |              ^
2023-09-08T21:12:09,462   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2023-09-08T21:12:09,464     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2023-09-08T21:12:09,465         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:09,467   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T21:12:09,469   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:09,471     596 |   if (&(sid) != NULL)
2023-09-08T21:12:09,473         |              ^
2023-09-08T21:12:09,475   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2023-09-08T21:12:09,476     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2023-09-08T21:12:09,478         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:09,479   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2023-09-08T21:12:09,480   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:09,481     674 |   catch (SBMLConstructorException)
2023-09-08T21:12:09,482         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:09,483   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:09,484   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:09,485     690 |   catch (SBMLConstructorException)
2023-09-08T21:12:09,486         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:10,035   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T21:12:10,036   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,038     568 |   if (&(sid) == NULL)
2023-09-08T21:12:10,039         |   ^~
2023-09-08T21:12:10,040   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T21:12:10,042   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,043      92 |   if (&orig == NULL)
2023-09-08T21:12:10,045         |   ^~
2023-09-08T21:12:10,046   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T21:12:10,048   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,050     110 |   if (&rhs == NULL)
2023-09-08T21:12:10,051         |   ^~
2023-09-08T21:12:10,052   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T21:12:10,053   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,054     207 |   if (&(sid) == NULL)
2023-09-08T21:12:10,055         |   ^~
2023-09-08T21:12:10,056   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T21:12:10,057   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,059     232 |   if (&(name) == NULL)
2023-09-08T21:12:10,061         |   ^~
2023-09-08T21:12:10,063   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T21:12:10,066   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:10,068     596 |   if (&(sid) != NULL)
2023-09-08T21:12:10,070         |   ^~
2023-09-08T21:12:15,619   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:15,620                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:15,621                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:15,622                    from ./base/sbml/Constraint.cpp:43:
2023-09-08T21:12:15,622   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:15,623      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:15,624         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:15,625   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:15,625                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:15,626                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:15,626                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:15,627                    from ./base/sbml/Constraint.cpp:33:
2023-09-08T21:12:15,628   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:15,628     117 |     struct unary_function
2023-09-08T21:12:15,629         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:15,910   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T21:12:15,910   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:15,911     101 |   if (&orig == NULL)
2023-09-08T21:12:15,912         |             ^
2023-09-08T21:12:15,912   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2023-09-08T21:12:15,913      96 | Constraint::Constraint (const Constraint& orig) :
2023-09-08T21:12:15,913         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:15,914   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T21:12:15,914   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:15,915     122 |   if (&rhs == NULL)
2023-09-08T21:12:15,916         |            ^
2023-09-08T21:12:15,917   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2023-09-08T21:12:15,918     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2023-09-08T21:12:15,918         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:15,943   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2023-09-08T21:12:15,944   ./base/sbml/Constraint.cpp:773:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:15,945     773 |   catch (SBMLConstructorException)
2023-09-08T21:12:15,946         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:15,946   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:15,947   ./base/sbml/Constraint.cpp:789:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:15,948     789 |   catch (SBMLConstructorException)
2023-09-08T21:12:15,949         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:16,480   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T21:12:16,480   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:16,481     101 |   if (&orig == NULL)
2023-09-08T21:12:16,482         |   ^~
2023-09-08T21:12:16,482   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T21:12:16,483   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:16,484     122 |   if (&rhs == NULL)
2023-09-08T21:12:16,485         |   ^~
2023-09-08T21:12:21,104   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:21,104                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:21,105                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:21,106                    from ./base/sbml/Delay.cpp:45:
2023-09-08T21:12:21,107   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:21,108      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:21,108         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:21,109   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:21,109                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:21,110                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:21,110                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:21,111                    from ./base/sbml/Delay.cpp:33:
2023-09-08T21:12:21,111   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:21,112     117 |     struct unary_function
2023-09-08T21:12:21,112         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:21,399   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T21:12:21,400   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:21,400     100 |   if (&orig == NULL)
2023-09-08T21:12:21,401         |             ^
2023-09-08T21:12:21,402   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2023-09-08T21:12:21,402      96 | Delay::Delay (const Delay& orig) :
2023-09-08T21:12:21,403         |               ~~~~~~~~~~~~~^~~~
2023-09-08T21:12:21,403   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T21:12:21,404   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:21,405     122 |   if (&rhs == NULL)
2023-09-08T21:12:21,405         |            ^
2023-09-08T21:12:21,406   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2023-09-08T21:12:21,406     120 | Delay& Delay::operator=(const Delay& rhs)
2023-09-08T21:12:21,407         |                         ~~~~~~~~~~~~~^~~
2023-09-08T21:12:21,424   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2023-09-08T21:12:21,425   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:21,426     648 |   catch (SBMLConstructorException)
2023-09-08T21:12:21,427         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:21,427   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:21,428   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:21,429     664 |   catch (SBMLConstructorException)
2023-09-08T21:12:21,430         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:21,916   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T21:12:21,917   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:21,918     100 |   if (&orig == NULL)
2023-09-08T21:12:21,918         |   ^~
2023-09-08T21:12:21,919   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T21:12:21,920   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:21,920     122 |   if (&rhs == NULL)
2023-09-08T21:12:21,921         |   ^~
2023-09-08T21:12:25,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:25,953                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:25,954                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:25,955                    from ./base/sbml/Event.cpp:44:
2023-09-08T21:12:25,956   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:25,956      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:25,957         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:25,958   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:25,958                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:25,959                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:25,959                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:25,960                    from ./base/sbml/Event.cpp:33:
2023-09-08T21:12:25,961   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:25,961     117 |     struct unary_function
2023-09-08T21:12:25,962         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:26,254   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T21:12:26,254   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:26,255     134 |   if (&orig == NULL)
2023-09-08T21:12:26,255         |             ^
2023-09-08T21:12:26,256   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2023-09-08T21:12:26,257     127 | Event::Event (const Event& orig) :
2023-09-08T21:12:26,257         |               ~~~~~~~~~~~~~^~~~
2023-09-08T21:12:26,258   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T21:12:26,259   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:26,259     171 |   if (&rhs == NULL)
2023-09-08T21:12:26,260         |            ^
2023-09-08T21:12:26,261   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2023-09-08T21:12:26,261     169 | Event& Event::operator=(const Event& rhs)
2023-09-08T21:12:26,262         |                         ~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,278   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T21:12:26,279   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:26,280     530 |   if (&(sid) == NULL)
2023-09-08T21:12:26,281         |              ^
2023-09-08T21:12:26,282   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2023-09-08T21:12:26,282     519 | Event::setId (const std::string& sid)
2023-09-08T21:12:26,283         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,284   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T21:12:26,285   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:12:26,285     556 |   if (&(name) == NULL)
2023-09-08T21:12:26,286         |               ^
2023-09-08T21:12:26,287   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2023-09-08T21:12:26,288     551 | Event::setName (const std::string& name)
2023-09-08T21:12:26,288         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:26,290   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T21:12:26,291   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:26,291     704 |   if (&(sid) == NULL)
2023-09-08T21:12:26,292         |              ^
2023-09-08T21:12:26,293   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2023-09-08T21:12:26,293     702 | Event::setTimeUnits (const std::string& sid)
2023-09-08T21:12:26,294         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,301   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2023-09-08T21:12:26,302   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T21:12:26,303    1079 |   return (&variable != NULL ) ?
2023-09-08T21:12:26,304         |                     ^
2023-09-08T21:12:26,304   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2023-09-08T21:12:26,305    1077 | Event::getEventAssignment (const std::string& variable) const
2023-09-08T21:12:26,305         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:12:26,306   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2023-09-08T21:12:26,306   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T21:12:26,307    1091 |   return (&variable != NULL ) ?
2023-09-08T21:12:26,307         |                     ^
2023-09-08T21:12:26,308   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2023-09-08T21:12:26,309    1089 | Event::getEventAssignment (const std::string& variable)
2023-09-08T21:12:26,309         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:12:26,310   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2023-09-08T21:12:26,310   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T21:12:26,311    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2023-09-08T21:12:26,311         |                     ^
2023-09-08T21:12:26,312   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2023-09-08T21:12:26,312    1122 | Event::removeEventAssignment (const std::string& variable)
2023-09-08T21:12:26,313         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:12:26,343   ./base/sbml/Event.cpp: At global scope:
2023-09-08T21:12:26,344   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:26,345    1741 | struct IdEqE : public unary_function<SBase*, bool>
2023-09-08T21:12:26,345         |                       ^~~~~~~~~~~~~~
2023-09-08T21:12:26,346   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:26,347     117 |     struct unary_function
2023-09-08T21:12:26,348         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:26,349   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2023-09-08T21:12:26,349   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:26,350    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2023-09-08T21:12:26,351         |                ^
2023-09-08T21:12:26,352   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2023-09-08T21:12:26,352    1753 | ListOfEvents::get (const std::string& sid)
2023-09-08T21:12:26,353         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,354   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T21:12:26,354   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:26,355    1764 |   if (&sid == NULL) return NULL;
2023-09-08T21:12:26,355         |            ^
2023-09-08T21:12:26,356   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2023-09-08T21:12:26,357    1762 | ListOfEvents::get (const std::string& sid) const
2023-09-08T21:12:26,357         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,358   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T21:12:26,359   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:26,360    1787 |   if (&(sid) != NULL)
2023-09-08T21:12:26,361         |              ^
2023-09-08T21:12:26,362   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2023-09-08T21:12:26,362    1782 | ListOfEvents::remove (const std::string& sid)
2023-09-08T21:12:26,363         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:26,368   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2023-09-08T21:12:26,368   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:26,369    1866 |   catch (SBMLConstructorException)
2023-09-08T21:12:26,370         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:26,370   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:26,371   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:26,371    1882 |   catch (SBMLConstructorException)
2023-09-08T21:12:26,372         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:26,990   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T21:12:26,991   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:26,991    1764 |   if (&sid == NULL) return NULL;
2023-09-08T21:12:26,992         |   ^~
2023-09-08T21:12:26,993   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T21:12:26,994   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:26,994     171 |   if (&rhs == NULL)
2023-09-08T21:12:26,995         |   ^~
2023-09-08T21:12:27,000   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T21:12:27,001   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:27,001     530 |   if (&(sid) == NULL)
2023-09-08T21:12:27,002         |   ^~
2023-09-08T21:12:27,003   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T21:12:27,003   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:27,004     556 |   if (&(name) == NULL)
2023-09-08T21:12:27,005         |   ^~
2023-09-08T21:12:27,005   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T21:12:27,006   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:27,007     704 |   if (&(sid) == NULL)
2023-09-08T21:12:27,008         |   ^~
2023-09-08T21:12:27,011   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T21:12:27,012   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:27,013    1787 |   if (&(sid) != NULL)
2023-09-08T21:12:27,013         |   ^~
2023-09-08T21:12:27,017   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T21:12:27,018   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:27,019     134 |   if (&orig == NULL)
2023-09-08T21:12:27,019         |   ^~
2023-09-08T21:12:34,174   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:34,174                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:34,175                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:34,176                    from ./base/sbml/EventAssignment.cpp:44:
2023-09-08T21:12:34,177   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:34,177      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:34,178         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:34,179   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:34,179                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:34,180                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:34,180                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:34,181                    from ./base/sbml/EventAssignment.cpp:33:
2023-09-08T21:12:34,181   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:34,182     117 |     struct unary_function
2023-09-08T21:12:34,182         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:34,485   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T21:12:34,486   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:34,486     100 |   if (&orig == NULL)
2023-09-08T21:12:34,487         |             ^
2023-09-08T21:12:34,488   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2023-09-08T21:12:34,488      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2023-09-08T21:12:34,489         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:34,489   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T21:12:34,490   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:34,490     122 |   if (&rhs == NULL)
2023-09-08T21:12:34,491         |            ^
2023-09-08T21:12:34,492   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2023-09-08T21:12:34,492     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2023-09-08T21:12:34,493         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:34,494   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T21:12:34,495   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:34,496     219 |   if (&(sid) == NULL)
2023-09-08T21:12:34,496         |              ^
2023-09-08T21:12:34,497   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2023-09-08T21:12:34,498     217 | EventAssignment::setVariable (const std::string& sid)
2023-09-08T21:12:34,499         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:34,524   ./base/sbml/EventAssignment.cpp: At global scope:
2023-09-08T21:12:34,525   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:34,525     846 | struct IdEqEA : public unary_function<SBase*, bool>
2023-09-08T21:12:34,526         |                        ^~~~~~~~~~~~~~
2023-09-08T21:12:34,527   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:34,527     117 |     struct unary_function
2023-09-08T21:12:34,528         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:34,529   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T21:12:34,529   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:34,530     871 |   if (&(sid) == NULL)
2023-09-08T21:12:34,531         |              ^
2023-09-08T21:12:34,532   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2023-09-08T21:12:34,532     867 | ListOfEventAssignments::get (const std::string& sid) const
2023-09-08T21:12:34,533         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:34,534   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T21:12:34,535   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:34,535     899 |   if (&(sid) != NULL)
2023-09-08T21:12:34,536         |              ^
2023-09-08T21:12:34,536   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2023-09-08T21:12:34,537     894 | ListOfEventAssignments::remove (const std::string& sid)
2023-09-08T21:12:34,538         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:34,543   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2023-09-08T21:12:34,544   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:34,544     992 |   catch (SBMLConstructorException)
2023-09-08T21:12:34,545         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:34,546   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:34,546   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:34,547    1008 |   catch (SBMLConstructorException)
2023-09-08T21:12:34,547         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:35,120   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T21:12:35,120   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:35,121     871 |   if (&(sid) == NULL)
2023-09-08T21:12:35,122         |   ^~
2023-09-08T21:12:35,123   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T21:12:35,124   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:35,124     100 |   if (&orig == NULL)
2023-09-08T21:12:35,125         |   ^~
2023-09-08T21:12:35,126   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T21:12:35,127   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:35,127     122 |   if (&rhs == NULL)
2023-09-08T21:12:35,128         |   ^~
2023-09-08T21:12:35,129   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T21:12:35,129   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:35,130     219 |   if (&(sid) == NULL)
2023-09-08T21:12:35,131         |   ^~
2023-09-08T21:12:35,136   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T21:12:35,137   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:35,138     899 |   if (&(sid) != NULL)
2023-09-08T21:12:35,138         |   ^~
2023-09-08T21:12:43,220   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:43,221                    from ./base/sbml/FunctionDefinition.cpp:47:
2023-09-08T21:12:43,221   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:43,222      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:43,223         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:43,224   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:43,224                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:43,225                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:43,225                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:43,226                    from ./base/sbml/FunctionDefinition.cpp:35:
2023-09-08T21:12:43,226   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:43,227     117 |     struct unary_function
2023-09-08T21:12:43,227         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:43,579   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T21:12:43,579   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:43,580     102 |   if (&orig == NULL)
2023-09-08T21:12:43,580         |             ^
2023-09-08T21:12:43,581   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2023-09-08T21:12:43,582      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2023-09-08T21:12:43,582         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:43,583   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T21:12:43,583   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:43,584     125 |   if (&rhs == NULL)
2023-09-08T21:12:43,585         |            ^
2023-09-08T21:12:43,585   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2023-09-08T21:12:43,586     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2023-09-08T21:12:43,587         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:43,588   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T21:12:43,588   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:43,589     253 |   if (&(sid) == NULL)
2023-09-08T21:12:43,590         |              ^
2023-09-08T21:12:43,591   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2023-09-08T21:12:43,591     242 | FunctionDefinition::setId (const std::string& sid)
2023-09-08T21:12:43,592         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:43,593   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T21:12:43,594   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:12:43,594     278 |   if (&(name) == NULL)
2023-09-08T21:12:43,595         |               ^
2023-09-08T21:12:43,596   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2023-09-08T21:12:43,596     273 | FunctionDefinition::setName (const std::string& name)
2023-09-08T21:12:43,597         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:43,624   ./base/sbml/FunctionDefinition.cpp: At global scope:
2023-09-08T21:12:43,624   ./base/sbml/FunctionDefinition.cpp:996:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:43,625     996 | struct IdEqFD : public unary_function<SBase*, bool>
2023-09-08T21:12:43,626         |                        ^~~~~~~~~~~~~~
2023-09-08T21:12:43,627   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:43,627     117 |     struct unary_function
2023-09-08T21:12:43,629         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:43,629   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T21:12:43,630   ./base/sbml/FunctionDefinition.cpp:1021:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:43,630    1021 |   if (&(sid) == NULL)
2023-09-08T21:12:43,631         |              ^
2023-09-08T21:12:43,632   ./base/sbml/FunctionDefinition.cpp:1017:52: note: ‘sid’ declared here
2023-09-08T21:12:43,632    1017 | ListOfFunctionDefinitions::get (const std::string& sid) const
2023-09-08T21:12:43,633         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:43,635   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T21:12:43,635   ./base/sbml/FunctionDefinition.cpp:1049:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:43,636    1049 |   if (&(sid) != NULL)
2023-09-08T21:12:43,636         |              ^
2023-09-08T21:12:43,637   ./base/sbml/FunctionDefinition.cpp:1044:55: note: ‘sid’ declared here
2023-09-08T21:12:43,638    1044 | ListOfFunctionDefinitions::remove (const std::string& sid)
2023-09-08T21:12:43,638         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:43,644   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2023-09-08T21:12:43,645   ./base/sbml/FunctionDefinition.cpp:1126:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:43,646    1126 |   catch (SBMLConstructorException)
2023-09-08T21:12:43,647         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:43,647   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:43,648   ./base/sbml/FunctionDefinition.cpp:1142:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:43,649    1142 |   catch (SBMLConstructorException)
2023-09-08T21:12:43,650         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:44,230   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T21:12:44,231   ./base/sbml/FunctionDefinition.cpp:1021:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,232    1021 |   if (&(sid) == NULL)
2023-09-08T21:12:44,232         |   ^~
2023-09-08T21:12:44,234   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T21:12:44,235   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,236     102 |   if (&orig == NULL)
2023-09-08T21:12:44,236         |   ^~
2023-09-08T21:12:44,237   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T21:12:44,238   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,238     125 |   if (&rhs == NULL)
2023-09-08T21:12:44,239         |   ^~
2023-09-08T21:12:44,240   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T21:12:44,240   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,241     253 |   if (&(sid) == NULL)
2023-09-08T21:12:44,242         |   ^~
2023-09-08T21:12:44,242   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T21:12:44,243   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,244     278 |   if (&(name) == NULL)
2023-09-08T21:12:44,244         |   ^~
2023-09-08T21:12:44,248   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T21:12:44,249   ./base/sbml/FunctionDefinition.cpp:1049:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:44,249    1049 |   if (&(sid) != NULL)
2023-09-08T21:12:44,250         |   ^~
2023-09-08T21:12:49,966   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:49,967                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:49,967                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:49,968                    from ./base/sbml/InitialAssignment.cpp:43:
2023-09-08T21:12:49,968   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:49,969      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:49,969         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:49,970   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:49,970                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:49,971                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:49,971                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:49,972                    from ./base/sbml/InitialAssignment.cpp:33:
2023-09-08T21:12:49,973   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:49,974     117 |     struct unary_function
2023-09-08T21:12:49,974         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:50,261   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T21:12:50,262   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:50,262      97 |   if (&orig == NULL)
2023-09-08T21:12:50,263         |             ^
2023-09-08T21:12:50,264   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2023-09-08T21:12:50,264      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2023-09-08T21:12:50,265         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:50,266   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T21:12:50,267   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:50,268     119 |   if (&rhs == NULL)
2023-09-08T21:12:50,268         |            ^
2023-09-08T21:12:50,269   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2023-09-08T21:12:50,270     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2023-09-08T21:12:50,270         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:50,271   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T21:12:50,272   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:50,273     232 |   if (&(sid) == NULL)
2023-09-08T21:12:50,273         |              ^
2023-09-08T21:12:50,274   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2023-09-08T21:12:50,275     230 | InitialAssignment::setSymbol (const std::string& sid)
2023-09-08T21:12:50,276         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:50,299   ./base/sbml/InitialAssignment.cpp: At global scope:
2023-09-08T21:12:50,300   ./base/sbml/InitialAssignment.cpp:845:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:50,301     845 | struct IdEqIA : public unary_function<SBase*, bool>
2023-09-08T21:12:50,301         |                        ^~~~~~~~~~~~~~
2023-09-08T21:12:50,302   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:50,302     117 |     struct unary_function
2023-09-08T21:12:50,303         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:50,304   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T21:12:50,305   ./base/sbml/InitialAssignment.cpp:870:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:50,305     870 |   if (&(sid) == NULL)
2023-09-08T21:12:50,306         |              ^
2023-09-08T21:12:50,307   ./base/sbml/InitialAssignment.cpp:866:51: note: ‘sid’ declared here
2023-09-08T21:12:50,307     866 | ListOfInitialAssignments::get (const std::string& sid) const
2023-09-08T21:12:50,308         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:50,309   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T21:12:50,310   ./base/sbml/InitialAssignment.cpp:898:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:50,310     898 |   if (&(sid) != NULL)
2023-09-08T21:12:50,311         |              ^
2023-09-08T21:12:50,312   ./base/sbml/InitialAssignment.cpp:893:54: note: ‘sid’ declared here
2023-09-08T21:12:50,312     893 | ListOfInitialAssignments::remove (const std::string& sid)
2023-09-08T21:12:50,313         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:50,318   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2023-09-08T21:12:50,319   ./base/sbml/InitialAssignment.cpp:991:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:50,320     991 |   catch (SBMLConstructorException)
2023-09-08T21:12:50,321         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:50,321   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:50,322   ./base/sbml/InitialAssignment.cpp:1007:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:50,323    1007 |   catch (SBMLConstructorException)
2023-09-08T21:12:50,324         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:50,895   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T21:12:50,896   ./base/sbml/InitialAssignment.cpp:870:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:50,896     870 |   if (&(sid) == NULL)
2023-09-08T21:12:50,897         |   ^~
2023-09-08T21:12:50,898   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T21:12:50,899   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:50,900      97 |   if (&orig == NULL)
2023-09-08T21:12:50,901         |   ^~
2023-09-08T21:12:50,901   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T21:12:50,902   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:50,903     119 |   if (&rhs == NULL)
2023-09-08T21:12:50,904         |   ^~
2023-09-08T21:12:50,904   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T21:12:50,905   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:50,906     232 |   if (&(sid) == NULL)
2023-09-08T21:12:50,906         |   ^~
2023-09-08T21:12:50,911   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T21:12:50,912   ./base/sbml/InitialAssignment.cpp:898:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:50,912     898 |   if (&(sid) != NULL)
2023-09-08T21:12:50,913         |   ^~
2023-09-08T21:12:56,620   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:12:56,620                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:12:56,621                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:12:56,622                    from ./base/sbml/KineticLaw.cpp:45:
2023-09-08T21:12:56,622   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:12:56,623      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:12:56,623         |                           ^~~~~~~~~~~~~~
2023-09-08T21:12:56,624   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:12:56,625                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:12:56,625                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:12:56,626                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:12:56,626                    from ./base/sbml/KineticLaw.cpp:33:
2023-09-08T21:12:56,627   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:12:56,628     117 |     struct unary_function
2023-09-08T21:12:56,629         |            ^~~~~~~~~~~~~~
2023-09-08T21:12:56,921   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T21:12:56,922   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:12:56,923     117 |   if (&orig == NULL)
2023-09-08T21:12:56,924         |             ^
2023-09-08T21:12:56,924   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2023-09-08T21:12:56,925     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2023-09-08T21:12:56,926         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:12:56,927   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T21:12:56,927   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:12:56,928     143 |   if (&rhs == NULL)
2023-09-08T21:12:56,928         |            ^
2023-09-08T21:12:56,929   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2023-09-08T21:12:56,930     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2023-09-08T21:12:56,931         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:56,942   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T21:12:56,942   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T21:12:56,943     363 |   if (&(formula) == NULL)
2023-09-08T21:12:56,944         |                  ^
2023-09-08T21:12:56,945   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2023-09-08T21:12:56,946     361 | KineticLaw::setFormula (const std::string& formula)
2023-09-08T21:12:56,946         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:12:56,947   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T21:12:56,948   ./base/sbml/KineticLaw.cpp:437:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:56,948     437 |   if (&(sid) == NULL)
2023-09-08T21:12:56,949         |              ^
2023-09-08T21:12:56,949   ./base/sbml/KineticLaw.cpp:434:46: note: ‘sid’ declared here
2023-09-08T21:12:56,950     434 | KineticLaw::setTimeUnits (const std::string& sid)
2023-09-08T21:12:56,950         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:56,951   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T21:12:56,951   ./base/sbml/KineticLaw.cpp:465:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:56,952     465 |   if (&(sid) == NULL)
2023-09-08T21:12:56,952         |              ^
2023-09-08T21:12:56,953   ./base/sbml/KineticLaw.cpp:462:51: note: ‘sid’ declared here
2023-09-08T21:12:56,953     462 | KineticLaw::setSubstanceUnits (const std::string& sid)
2023-09-08T21:12:56,954         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:56,967   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2023-09-08T21:12:56,967   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:56,968    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2023-09-08T21:12:56,968         |                ^
2023-09-08T21:12:56,969   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2023-09-08T21:12:56,970    1032 | KineticLaw::removeParameter (const std::string& sid)
2023-09-08T21:12:56,970         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:56,971   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2023-09-08T21:12:56,972   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:12:56,973    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2023-09-08T21:12:56,973         |                ^
2023-09-08T21:12:56,974   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2023-09-08T21:12:56,975    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2023-09-08T21:12:56,976         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:12:57,000   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2023-09-08T21:12:57,001   ./base/sbml/KineticLaw.cpp:1612:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:57,001    1612 |   catch (SBMLConstructorException)
2023-09-08T21:12:57,002         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:57,003   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:12:57,004   ./base/sbml/KineticLaw.cpp:1628:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:12:57,004    1628 |   catch (SBMLConstructorException)
2023-09-08T21:12:57,005         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:12:57,537   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T21:12:57,538   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:57,539     363 |   if (&(formula) == NULL)
2023-09-08T21:12:57,540         |   ^~
2023-09-08T21:12:57,544   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T21:12:57,544   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:57,545     143 |   if (&rhs == NULL)
2023-09-08T21:12:57,546         |   ^~
2023-09-08T21:12:57,548   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T21:12:57,549   ./base/sbml/KineticLaw.cpp:437:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:57,550     437 |   if (&(sid) == NULL)
2023-09-08T21:12:57,550         |   ^~
2023-09-08T21:12:57,551   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T21:12:57,551   ./base/sbml/KineticLaw.cpp:465:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:57,552     465 |   if (&(sid) == NULL)
2023-09-08T21:12:57,553         |   ^~
2023-09-08T21:12:57,558   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T21:12:57,558   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:12:57,559     117 |   if (&orig == NULL)
2023-09-08T21:12:57,559         |   ^~
2023-09-08T21:13:03,377   In file included from ./base/sbml/ListOf.cpp:37:
2023-09-08T21:13:03,378   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,378      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:03,379         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:03,380   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:13:03,380                    from ./base/sbml/ListOf.cpp:34:
2023-09-08T21:13:03,381   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,382     117 |     struct unary_function
2023-09-08T21:13:03,382         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:03,592   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,593      76 | struct Delete : public unary_function<SBase*, void>
2023-09-08T21:13:03,594         |                        ^~~~~~~~~~~~~~
2023-09-08T21:13:03,594   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,595     117 |     struct unary_function
2023-09-08T21:13:03,596         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:03,596   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,597      94 | struct Clone : public unary_function<SBase*, SBase*>
2023-09-08T21:13:03,598         |                       ^~~~~~~~~~~~~~
2023-09-08T21:13:03,598   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,599     117 |     struct unary_function
2023-09-08T21:13:03,600         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:03,619   ./base/sbml/ListOf.cpp:458:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,620     458 | struct SetSBMLDocument : public unary_function<SBase*, void>
2023-09-08T21:13:03,620         |                                 ^~~~~~~~~~~~~~
2023-09-08T21:13:03,621   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,622     117 |     struct unary_function
2023-09-08T21:13:03,623         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:03,624   ./base/sbml/ListOf.cpp:470:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,624     470 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2023-09-08T21:13:03,625         |                                     ^~~~~~~~~~~~~~
2023-09-08T21:13:03,626   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,627     117 |     struct unary_function
2023-09-08T21:13:03,627         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:03,628   ./base/sbml/ListOf.cpp:542:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:03,628     542 | struct Write : public unary_function<SBase*, void>
2023-09-08T21:13:03,629         |                       ^~~~~~~~~~~~~~
2023-09-08T21:13:03,630   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:03,630     117 |     struct unary_function
2023-09-08T21:13:03,631         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:08,600   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:08,601                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:08,601                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:08,602                    from ./base/sbml/LocalParameter.cpp:42:
2023-09-08T21:13:08,602   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:08,603      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:08,603         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:08,604   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:08,605                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:08,605                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:08,606                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:08,607                    from ./base/sbml/LocalParameter.cpp:35:
2023-09-08T21:13:08,607   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:08,608     117 |     struct unary_function
2023-09-08T21:13:08,609         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:08,901   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T21:13:08,901   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:08,902     103 |   if (&orig == NULL)
2023-09-08T21:13:08,903         |             ^
2023-09-08T21:13:08,904   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2023-09-08T21:13:08,905     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2023-09-08T21:13:08,906         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:08,906   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T21:13:08,907   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:08,908     116 |   if (&orig == NULL)
2023-09-08T21:13:08,908         |             ^
2023-09-08T21:13:08,909   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2023-09-08T21:13:08,910     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2023-09-08T21:13:08,910         |                                ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:08,911   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T21:13:08,912   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:13:08,913     126 |   if (&rhs == NULL)
2023-09-08T21:13:08,913         |            ^
2023-09-08T21:13:08,914   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2023-09-08T21:13:08,915     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2023-09-08T21:13:08,916         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:08,917   ./base/sbml/LocalParameter.cpp: At global scope:
2023-09-08T21:13:08,918   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:08,918     386 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T21:13:08,919         |                       ^~~~~~~~~~~~~~
2023-09-08T21:13:08,919   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:08,920     117 |     struct unary_function
2023-09-08T21:13:08,920         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:08,922   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T21:13:08,922   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:08,923     411 |   if (&(sid) == NULL)
2023-09-08T21:13:08,924         |              ^
2023-09-08T21:13:08,924   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2023-09-08T21:13:08,925     407 | ListOfLocalParameters::get (const std::string& sid) const
2023-09-08T21:13:08,925         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:08,928   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T21:13:08,929   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:08,930     453 |   if (&(sid) != NULL)
2023-09-08T21:13:08,930         |              ^
2023-09-08T21:13:08,931   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2023-09-08T21:13:08,932     448 | ListOfLocalParameters::remove (const std::string& sid)
2023-09-08T21:13:08,932         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:08,937   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2023-09-08T21:13:08,938   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:08,939     533 |   catch (SBMLConstructorException)
2023-09-08T21:13:08,939         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:08,940   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:08,941   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:08,942     549 |   catch (SBMLConstructorException)
2023-09-08T21:13:08,942         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:09,494   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T21:13:09,495   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:09,495     411 |   if (&(sid) == NULL)
2023-09-08T21:13:09,496         |   ^~
2023-09-08T21:13:09,497   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T21:13:09,498   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:09,499     103 |   if (&orig == NULL)
2023-09-08T21:13:09,499         |   ^~
2023-09-08T21:13:09,500   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T21:13:09,501   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:09,502     116 |   if (&orig == NULL)
2023-09-08T21:13:09,502         |   ^~
2023-09-08T21:13:09,503   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T21:13:09,503   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:09,504     126 |   if (&rhs == NULL)
2023-09-08T21:13:09,504         |   ^~
2023-09-08T21:13:09,506   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T21:13:09,507   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:09,507     453 |   if (&(sid) != NULL)
2023-09-08T21:13:09,508         |   ^~
2023-09-08T21:13:13,867   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:13,867                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:13,868                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:13,869                    from ./base/sbml/Model.cpp:41:
2023-09-08T21:13:13,869   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:13,870      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:13,870         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:13,871   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:13,871                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:13,872                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:13,873                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:13,873                    from ./base/sbml/Model.cpp:33:
2023-09-08T21:13:13,874   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:13,875     117 |     struct unary_function
2023-09-08T21:13:13,875         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:14,239   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T21:13:14,240   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:14,241     175 |   if (&orig == NULL)
2023-09-08T21:13:14,241         |             ^
2023-09-08T21:13:14,242   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2023-09-08T21:13:14,243     160 | Model::Model(const Model& orig) :
2023-09-08T21:13:14,244         |              ~~~~~~~~~~~~~^~~~
2023-09-08T21:13:14,245   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T21:13:14,245   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:13:14,246     216 |   if (&rhs == NULL)
2023-09-08T21:13:14,247         |            ^
2023-09-08T21:13:14,247   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2023-09-08T21:13:14,248     214 | Model& Model::operator=(const Model& rhs)
2023-09-08T21:13:14,248         |                         ~~~~~~~~~~~~~^~~
2023-09-08T21:13:14,299   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T21:13:14,300   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:14,300     718 |   if (&(sid) == NULL)
2023-09-08T21:13:14,301         |              ^
2023-09-08T21:13:14,302   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2023-09-08T21:13:14,302     707 | Model::setId (const std::string& sid)
2023-09-08T21:13:14,303         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:14,304   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T21:13:14,305   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:13:14,305     743 |   if (&(name) == NULL)
2023-09-08T21:13:14,306         |               ^
2023-09-08T21:13:14,306   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2023-09-08T21:13:14,307     738 | Model::setName (const std::string& name)
2023-09-08T21:13:14,307         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:14,308   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T21:13:14,308   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,309     773 |   if (&(units) == NULL)
2023-09-08T21:13:14,310         |                ^
2023-09-08T21:13:14,310   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2023-09-08T21:13:14,311     771 | Model::setSubstanceUnits (const std::string& units)
2023-09-08T21:13:14,311         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,312   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T21:13:14,313   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,313     799 |   if (&(units) == NULL)
2023-09-08T21:13:14,314         |                ^
2023-09-08T21:13:14,314   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2023-09-08T21:13:14,315     797 | Model::setTimeUnits (const std::string& units)
2023-09-08T21:13:14,316         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,316   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T21:13:14,317   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,318     825 |   if (&(units) == NULL)
2023-09-08T21:13:14,318         |                ^
2023-09-08T21:13:14,319   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2023-09-08T21:13:14,320     823 | Model::setVolumeUnits (const std::string& units)
2023-09-08T21:13:14,320         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,321   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T21:13:14,321   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,322     851 |   if (&(units) == NULL)
2023-09-08T21:13:14,323         |                ^
2023-09-08T21:13:14,323   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2023-09-08T21:13:14,324     849 | Model::setAreaUnits (const std::string& units)
2023-09-08T21:13:14,325         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,325   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T21:13:14,326   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,327     877 |   if (&(units) == NULL)
2023-09-08T21:13:14,327         |                ^
2023-09-08T21:13:14,328   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2023-09-08T21:13:14,329     875 | Model::setLengthUnits (const std::string& units)
2023-09-08T21:13:14,329         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,330   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T21:13:14,331   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:14,331     903 |   if (&(units) == NULL)
2023-09-08T21:13:14,332         |                ^
2023-09-08T21:13:14,333   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2023-09-08T21:13:14,334     901 | Model::setExtentUnits (const std::string& units)
2023-09-08T21:13:14,334         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:14,335   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T21:13:14,335   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T21:13:14,336     929 |   if (&(id) == NULL)
2023-09-08T21:13:14,337         |             ^
2023-09-08T21:13:14,337   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2023-09-08T21:13:14,338     927 | Model::setConversionFactor (const std::string& id)
2023-09-08T21:13:14,338         |                             ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T21:13:14,526   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2023-09-08T21:13:14,527   ./base/sbml/Model.cpp:6185:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:14,527    6185 |   catch (SBMLConstructorException)
2023-09-08T21:13:14,528         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:14,529   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:14,529   ./base/sbml/Model.cpp:6201:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:14,530    6201 |   catch (SBMLConstructorException)
2023-09-08T21:13:14,530         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:15,319   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T21:13:15,319   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,320     216 |   if (&rhs == NULL)
2023-09-08T21:13:15,321         |   ^~
2023-09-08T21:13:15,336   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T21:13:15,337   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,337     718 |   if (&(sid) == NULL)
2023-09-08T21:13:15,338         |   ^~
2023-09-08T21:13:15,339   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T21:13:15,339   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,340     743 |   if (&(name) == NULL)
2023-09-08T21:13:15,341         |   ^~
2023-09-08T21:13:15,342   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T21:13:15,342   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,343     773 |   if (&(units) == NULL)
2023-09-08T21:13:15,344         |   ^~
2023-09-08T21:13:15,344   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T21:13:15,345   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,346     799 |   if (&(units) == NULL)
2023-09-08T21:13:15,347         |   ^~
2023-09-08T21:13:15,347   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T21:13:15,348   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,349     825 |   if (&(units) == NULL)
2023-09-08T21:13:15,349         |   ^~
2023-09-08T21:13:15,350   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T21:13:15,351   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,352     851 |   if (&(units) == NULL)
2023-09-08T21:13:15,353         |   ^~
2023-09-08T21:13:15,353   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T21:13:15,354   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,354     877 |   if (&(units) == NULL)
2023-09-08T21:13:15,354         |   ^~
2023-09-08T21:13:15,355   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T21:13:15,355   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,356     903 |   if (&(units) == NULL)
2023-09-08T21:13:15,356         |   ^~
2023-09-08T21:13:15,357   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T21:13:15,358   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,358     929 |   if (&(id) == NULL)
2023-09-08T21:13:15,359         |   ^~
2023-09-08T21:13:15,370   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T21:13:15,371   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:15,371     175 |   if (&orig == NULL)
2023-09-08T21:13:15,372         |   ^~
2023-09-08T21:13:30,017   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:30,018                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:30,018                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:30,019                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2023-09-08T21:13:30,020   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:30,020      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:30,021         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:30,021   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:30,022                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:30,023                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:30,023                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:30,024                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2023-09-08T21:13:30,025   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:30,025     117 |     struct unary_function
2023-09-08T21:13:30,026         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:30,329   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T21:13:30,330   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:30,331     163 |   catch (SBMLConstructorException)
2023-09-08T21:13:30,331         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:30,332   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:30,333   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:30,333     179 |   catch (SBMLConstructorException)
2023-09-08T21:13:30,334         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:34,445   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:34,445                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:34,446                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:34,447                    from ./base/sbml/Parameter.cpp:42:
2023-09-08T21:13:34,448   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:34,449      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:34,449         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:34,450   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:34,450                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:34,451                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:34,451                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:34,452                    from ./base/sbml/Parameter.cpp:35:
2023-09-08T21:13:34,453   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:34,453     117 |     struct unary_function
2023-09-08T21:13:34,454         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:34,747   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T21:13:34,748   ./base/sbml/Parameter.cpp:155:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:34,749     155 |   if (&orig == NULL)
2023-09-08T21:13:34,749         |             ^
2023-09-08T21:13:34,750   ./base/sbml/Parameter.cpp:152:39: note: ‘orig’ declared here
2023-09-08T21:13:34,751     152 | Parameter::Parameter(const Parameter& orig) :
2023-09-08T21:13:34,751         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:34,752   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T21:13:34,752   ./base/sbml/Parameter.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:13:34,753     179 |   if (&rhs == NULL)
2023-09-08T21:13:34,754         |            ^
2023-09-08T21:13:34,755   ./base/sbml/Parameter.cpp:177:50: note: ‘rhs’ declared here
2023-09-08T21:13:34,755     177 | Parameter& Parameter::operator=(const Parameter& rhs)
2023-09-08T21:13:34,756         |                                 ~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:34,757   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T21:13:34,758   ./base/sbml/Parameter.cpp:366:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:34,758     366 |   if (&(sid) == NULL)
2023-09-08T21:13:34,759         |              ^
2023-09-08T21:13:34,760   ./base/sbml/Parameter.cpp:355:38: note: ‘sid’ declared here
2023-09-08T21:13:34,761     355 | Parameter::setId (const std::string& sid)
2023-09-08T21:13:34,762         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:34,763   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T21:13:34,763   ./base/sbml/Parameter.cpp:391:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:13:34,764     391 |   if (&(name) == NULL)
2023-09-08T21:13:34,765         |               ^
2023-09-08T21:13:34,766   ./base/sbml/Parameter.cpp:386:40: note: ‘name’ declared here
2023-09-08T21:13:34,766     386 | Parameter::setName (const std::string& name)
2023-09-08T21:13:34,767         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:34,768   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T21:13:34,769   ./base/sbml/Parameter.cpp:433:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T21:13:34,769     433 |   if (&(units) == NULL)
2023-09-08T21:13:34,770         |                ^
2023-09-08T21:13:34,771   ./base/sbml/Parameter.cpp:431:41: note: ‘units’ declared here
2023-09-08T21:13:34,772     431 | Parameter::setUnits (const std::string& units)
2023-09-08T21:13:34,773         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:13:34,827   ./base/sbml/Parameter.cpp: At global scope:
2023-09-08T21:13:34,828   ./base/sbml/Parameter.cpp:1525:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:34,829    1525 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T21:13:34,829         |                       ^~~~~~~~~~~~~~
2023-09-08T21:13:34,830   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:34,831     117 |     struct unary_function
2023-09-08T21:13:34,831         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:34,832   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T21:13:34,833   ./base/sbml/Parameter.cpp:1548:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:34,834    1548 |   if (&(sid) == NULL)
2023-09-08T21:13:34,834         |              ^
2023-09-08T21:13:34,835   ./base/sbml/Parameter.cpp:1544:43: note: ‘sid’ declared here
2023-09-08T21:13:34,836    1544 | ListOfParameters::get (const std::string& sid) const
2023-09-08T21:13:34,837         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:34,838   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T21:13:34,838   ./base/sbml/Parameter.cpp:1575:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:34,839    1575 |   if (&(sid) != NULL)
2023-09-08T21:13:34,840         |              ^
2023-09-08T21:13:34,840   ./base/sbml/Parameter.cpp:1570:46: note: ‘sid’ declared here
2023-09-08T21:13:34,841    1570 | ListOfParameters::remove (const std::string& sid)
2023-09-08T21:13:34,842         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:34,846   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2023-09-08T21:13:34,847   ./base/sbml/Parameter.cpp:1655:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:34,848    1655 |   catch (SBMLConstructorException)
2023-09-08T21:13:34,849         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:34,849   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:34,850   ./base/sbml/Parameter.cpp:1671:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:34,851    1671 |   catch (SBMLConstructorException)
2023-09-08T21:13:34,851         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:35,460   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T21:13:35,461   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,462     155 |   if (&orig == NULL)
2023-09-08T21:13:35,462         |   ^~
2023-09-08T21:13:35,463   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T21:13:35,464   ./base/sbml/Parameter.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,464     179 |   if (&rhs == NULL)
2023-09-08T21:13:35,465         |   ^~
2023-09-08T21:13:35,466   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T21:13:35,467   ./base/sbml/Parameter.cpp:366:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,467     366 |   if (&(sid) == NULL)
2023-09-08T21:13:35,468         |   ^~
2023-09-08T21:13:35,469   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T21:13:35,470   ./base/sbml/Parameter.cpp:391:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,471     391 |   if (&(name) == NULL)
2023-09-08T21:13:35,471         |   ^~
2023-09-08T21:13:35,472   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T21:13:35,472   ./base/sbml/Parameter.cpp:433:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,473     433 |   if (&(units) == NULL)
2023-09-08T21:13:35,473         |   ^~
2023-09-08T21:13:35,477   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T21:13:35,478   ./base/sbml/Parameter.cpp:1548:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,479    1548 |   if (&(sid) == NULL)
2023-09-08T21:13:35,479         |   ^~
2023-09-08T21:13:35,486   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T21:13:35,487   ./base/sbml/Parameter.cpp:1575:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:35,488    1575 |   if (&(sid) != NULL)
2023-09-08T21:13:35,488         |   ^~
2023-09-08T21:13:44,008   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:44,009                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:44,009                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:44,010                    from ./base/sbml/Priority.cpp:45:
2023-09-08T21:13:44,010   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:44,011      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:44,011         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:44,012   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:44,013                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:44,014                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:44,014                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:44,015                    from ./base/sbml/Priority.cpp:33:
2023-09-08T21:13:44,016   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:44,017     117 |     struct unary_function
2023-09-08T21:13:44,017         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:44,302   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T21:13:44,303   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:44,304     100 |   if (&orig == NULL)
2023-09-08T21:13:44,304         |             ^
2023-09-08T21:13:44,305   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2023-09-08T21:13:44,306      96 | Priority::Priority (const Priority& orig) :
2023-09-08T21:13:44,306         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:44,307   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T21:13:44,307   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:13:44,308     122 |   if (&rhs == NULL)
2023-09-08T21:13:44,309         |            ^
2023-09-08T21:13:44,309   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2023-09-08T21:13:44,310     120 | Priority& Priority::operator=(const Priority& rhs)
2023-09-08T21:13:44,311         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:44,322   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2023-09-08T21:13:44,323   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:44,324     503 |   catch (SBMLConstructorException)
2023-09-08T21:13:44,324         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:44,325   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:44,326   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:44,326     519 |   catch (SBMLConstructorException)
2023-09-08T21:13:44,327         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:44,810   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T21:13:44,810   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:44,811     100 |   if (&orig == NULL)
2023-09-08T21:13:44,811         |   ^~
2023-09-08T21:13:44,812   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T21:13:44,812   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:44,813     122 |   if (&rhs == NULL)
2023-09-08T21:13:44,813         |   ^~
2023-09-08T21:13:48,632   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:13:48,633                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:13:48,633                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:13:48,634                    from ./base/sbml/RateRule.cpp:49:
2023-09-08T21:13:48,635   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:48,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:48,636         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:48,637   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:48,637                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:48,638                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:48,638                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:48,639                    from ./base/sbml/RateRule.cpp:34:
2023-09-08T21:13:48,640   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:48,640     117 |     struct unary_function
2023-09-08T21:13:48,641         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:48,926   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2023-09-08T21:13:48,927   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:48,928     154 |   catch (SBMLConstructorException)
2023-09-08T21:13:48,929         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:48,929   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:48,930   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:48,931     170 |   catch (SBMLConstructorException)
2023-09-08T21:13:48,931         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:52,876   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T21:13:52,876                    from ./base/sbml/Reaction.cpp:40:
2023-09-08T21:13:52,877   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:13:52,878      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:13:52,879         |                           ^~~~~~~~~~~~~~
2023-09-08T21:13:52,880   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:13:52,880                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:13:52,881                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:13:52,882                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:13:52,883                    from ./base/sbml/Reaction.cpp:33:
2023-09-08T21:13:52,883   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:13:52,884     117 |     struct unary_function
2023-09-08T21:13:52,884         |            ^~~~~~~~~~~~~~
2023-09-08T21:13:53,259   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T21:13:53,260   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:13:53,260     185 |   if (&orig == NULL)
2023-09-08T21:13:53,261         |             ^
2023-09-08T21:13:53,262   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2023-09-08T21:13:53,262     178 | Reaction::Reaction (const Reaction& orig) :
2023-09-08T21:13:53,263         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:53,264   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T21:13:53,264   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:13:53,265     215 |   if (&rhs == NULL)
2023-09-08T21:13:53,266         |            ^
2023-09-08T21:13:53,266   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2023-09-08T21:13:53,267     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2023-09-08T21:13:53,267         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:53,282   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T21:13:53,283   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:53,284     549 |   if (&(sid) == NULL)
2023-09-08T21:13:53,284         |              ^
2023-09-08T21:13:53,285   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2023-09-08T21:13:53,286     538 | Reaction::setId (const std::string& sid)
2023-09-08T21:13:53,286         |                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:53,287   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T21:13:53,288   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:13:53,288     574 |   if (&(name) == NULL)
2023-09-08T21:13:53,289         |               ^
2023-09-08T21:13:53,290   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2023-09-08T21:13:53,291     569 | Reaction::setName (const std::string& name)
2023-09-08T21:13:53,291         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:13:53,292   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T21:13:53,293   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:53,293     665 |   if (&(sid) == NULL)
2023-09-08T21:13:53,294         |              ^
2023-09-08T21:13:53,295   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2023-09-08T21:13:53,296     663 | Reaction::setCompartment (const std::string& sid)
2023-09-08T21:13:53,296         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:53,350   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T21:13:53,351   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:53,352    1900 |   if (&(sid) == NULL)
2023-09-08T21:13:53,353         |              ^
2023-09-08T21:13:53,353   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2023-09-08T21:13:53,354    1896 | ListOfReactions::get (const std::string& sid) const
2023-09-08T21:13:53,355         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:53,357   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T21:13:53,358   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:13:53,359    1927 |   if (&(sid) != NULL)
2023-09-08T21:13:53,359         |              ^
2023-09-08T21:13:53,360   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2023-09-08T21:13:53,360    1922 | ListOfReactions::remove (const std::string& sid)
2023-09-08T21:13:53,361         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:13:53,366   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2023-09-08T21:13:53,367   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:53,367    2005 |   catch (SBMLConstructorException)
2023-09-08T21:13:53,368         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:53,368   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:13:53,369   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:13:53,370    2021 |   catch (SBMLConstructorException)
2023-09-08T21:13:53,370         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:13:53,990   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T21:13:53,991   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:53,991     215 |   if (&rhs == NULL)
2023-09-08T21:13:53,992         |   ^~
2023-09-08T21:13:53,997   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T21:13:53,997   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:53,998     549 |   if (&(sid) == NULL)
2023-09-08T21:13:53,999         |   ^~
2023-09-08T21:13:54,000   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T21:13:54,000   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:54,001     574 |   if (&(name) == NULL)
2023-09-08T21:13:54,002         |   ^~
2023-09-08T21:13:54,002   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T21:13:54,003   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:54,004     665 |   if (&(sid) == NULL)
2023-09-08T21:13:54,004         |   ^~
2023-09-08T21:13:54,005   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T21:13:54,006   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:54,006    1900 |   if (&(sid) == NULL)
2023-09-08T21:13:54,007         |   ^~
2023-09-08T21:13:54,010   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T21:13:54,011   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:54,012    1927 |   if (&(sid) != NULL)
2023-09-08T21:13:54,012         |   ^~
2023-09-08T21:13:54,016   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T21:13:54,017   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:13:54,017     185 |   if (&orig == NULL)
2023-09-08T21:13:54,018         |   ^~
2023-09-08T21:14:01,666   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:01,667                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:01,668                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:01,668                    from ./base/sbml/Rule.cpp:49:
2023-09-08T21:14:01,669   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:01,669      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:01,670         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:01,670   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:01,671                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:14:01,671                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:14:01,672                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:14:01,672                    from ./base/sbml/Rule.cpp:34:
2023-09-08T21:14:01,673   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:01,674     117 |     struct unary_function
2023-09-08T21:14:01,674         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:01,961   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T21:14:01,962   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:14:01,963     110 |   if (&orig == NULL)
2023-09-08T21:14:01,963         |             ^
2023-09-08T21:14:01,964   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2023-09-08T21:14:01,964     106 | Rule::Rule (const Rule& orig) :
2023-09-08T21:14:01,965         |             ~~~~~~~~~~~~^~~~
2023-09-08T21:14:01,966   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T21:14:01,966   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:14:01,967     137 |   if (&rhs == NULL)
2023-09-08T21:14:01,968         |            ^
2023-09-08T21:14:01,969   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2023-09-08T21:14:01,969     135 | Rule& Rule::operator=(const Rule& rhs)
2023-09-08T21:14:01,970         |                       ~~~~~~~~~~~~^~~
2023-09-08T21:14:01,975   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T21:14:01,976   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T21:14:01,976     326 |   if (&(formula) == NULL)
2023-09-08T21:14:01,977         |                  ^
2023-09-08T21:14:01,978   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2023-09-08T21:14:01,979     324 | Rule::setFormula (const std::string& formula)
2023-09-08T21:14:01,979         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:14:01,980   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T21:14:01,981   ./base/sbml/Rule.cpp:399:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:14:01,982     399 |   if (&(sid) == NULL)
2023-09-08T21:14:01,982         |              ^
2023-09-08T21:14:01,983   ./base/sbml/Rule.cpp:397:39: note: ‘sid’ declared here
2023-09-08T21:14:01,984     397 | Rule::setVariable (const std::string& sid)
2023-09-08T21:14:01,985         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:01,985   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T21:14:01,986   ./base/sbml/Rule.cpp:427:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2023-09-08T21:14:01,987     427 |   if (&(sname) == NULL)
2023-09-08T21:14:01,988         |                ^
2023-09-08T21:14:01,989   ./base/sbml/Rule.cpp:424:36: note: ‘sname’ declared here
2023-09-08T21:14:01,989     424 | Rule::setUnits (const std::string& sname)
2023-09-08T21:14:01,990         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:14:02,040   ./base/sbml/Rule.cpp: At global scope:
2023-09-08T21:14:02,040   ./base/sbml/Rule.cpp:1432:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:02,041    1432 | struct IdEqRule : public unary_function<SBase*, bool>
2023-09-08T21:14:02,041         |                          ^~~~~~~~~~~~~~
2023-09-08T21:14:02,042   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:02,043     117 |     struct unary_function
2023-09-08T21:14:02,043         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:02,044   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T21:14:02,045   ./base/sbml/Rule.cpp:1457:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:14:02,045    1457 |   if (&(sid) == NULL)
2023-09-08T21:14:02,046         |              ^
2023-09-08T21:14:02,047   ./base/sbml/Rule.cpp:1453:38: note: ‘sid’ declared here
2023-09-08T21:14:02,047    1453 | ListOfRules::get (const std::string& sid) const
2023-09-08T21:14:02,048         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:02,050   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T21:14:02,051   ./base/sbml/Rule.cpp:1498:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:14:02,051    1498 |   if (&(sid) != NULL)
2023-09-08T21:14:02,052         |              ^
2023-09-08T21:14:02,053   ./base/sbml/Rule.cpp:1493:41: note: ‘sid’ declared here
2023-09-08T21:14:02,054    1493 | ListOfRules::remove (const std::string& sid)
2023-09-08T21:14:02,055         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:02,069   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2023-09-08T21:14:02,070   ./base/sbml/Rule.cpp:1687:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,071    1687 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,071         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,072   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:14:02,073   ./base/sbml/Rule.cpp:1703:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,074    1703 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,075         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,075   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2023-09-08T21:14:02,076   ./base/sbml/Rule.cpp:1719:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,077    1719 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,078         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,078   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:14:02,079   ./base/sbml/Rule.cpp:1735:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,080    1735 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,080         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,081   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2023-09-08T21:14:02,082   ./base/sbml/Rule.cpp:1751:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,083    1751 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,084         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,084   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:14:02,085   ./base/sbml/Rule.cpp:1767:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:02,086    1767 |   catch (SBMLConstructorException)
2023-09-08T21:14:02,086         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:02,675   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T21:14:02,675   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,676     326 |   if (&(formula) == NULL)
2023-09-08T21:14:02,677         |   ^~
2023-09-08T21:14:02,685   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T21:14:02,686   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,686     110 |   if (&orig == NULL)
2023-09-08T21:14:02,687         |   ^~
2023-09-08T21:14:02,687   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T21:14:02,688   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,688     137 |   if (&rhs == NULL)
2023-09-08T21:14:02,689         |   ^~
2023-09-08T21:14:02,690   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T21:14:02,690   ./base/sbml/Rule.cpp:399:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,691     399 |   if (&(sid) == NULL)
2023-09-08T21:14:02,691         |   ^~
2023-09-08T21:14:02,692   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T21:14:02,693   ./base/sbml/Rule.cpp:427:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,693     427 |   if (&(sname) == NULL)
2023-09-08T21:14:02,694         |   ^~
2023-09-08T21:14:02,696   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T21:14:02,697   ./base/sbml/Rule.cpp:1457:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,698    1457 |   if (&(sid) == NULL)
2023-09-08T21:14:02,699         |   ^~
2023-09-08T21:14:02,705   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T21:14:02,705   ./base/sbml/Rule.cpp:1498:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:02,706    1498 |   if (&(sid) != NULL)
2023-09-08T21:14:02,707         |   ^~
2023-09-08T21:14:13,215   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:13,216                    from ./base//sbml/Model.h:446,
2023-09-08T21:14:13,216                    from ./base/sbml/SBMLConvert.cpp:37:
2023-09-08T21:14:13,217   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:13,218      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:13,218         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:13,219   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:13,220                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:14:13,220                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T21:14:13,221                    from ./base/sbml/SBMLConvert.cpp:34:
2023-09-08T21:14:13,222   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:13,223     117 |     struct unary_function
2023-09-08T21:14:13,223         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:21,196   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:21,197                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:21,197                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:21,198                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:14:21,198                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T21:14:21,199                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T21:14:21,199                    from ./base/sbml/SBMLDocument.cpp:44:
2023-09-08T21:14:21,199   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:21,200      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:21,200         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:21,201   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:21,201                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:14:21,202                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:14:21,202                    from /usr/include/c++/12/ios:42,
2023-09-08T21:14:21,203                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:14:21,203                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:14:21,204                    from ./base/sbml/SBMLDocument.cpp:35:
2023-09-08T21:14:21,205   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:21,205     117 |     struct unary_function
2023-09-08T21:14:21,206         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:21,627   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T21:14:21,628   ./base/sbml/SBMLDocument.cpp:259:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:14:21,629     259 |   if (&orig == NULL)
2023-09-08T21:14:21,629         |             ^
2023-09-08T21:14:21,630   ./base/sbml/SBMLDocument.cpp:254:49: note: ‘orig’ declared here
2023-09-08T21:14:21,631     254 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2023-09-08T21:14:21,632         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:14:21,634   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T21:14:21,634   ./base/sbml/SBMLDocument.cpp:300:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:14:21,635     300 |   if (&rhs == NULL)
2023-09-08T21:14:21,636         |            ^
2023-09-08T21:14:21,637   ./base/sbml/SBMLDocument.cpp:298:59: note: ‘rhs’ declared here
2023-09-08T21:14:21,638     298 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2023-09-08T21:14:21,638         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:21,789   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2023-09-08T21:14:21,790   ./base/sbml/SBMLDocument.cpp:1922:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:21,791    1922 |   catch (SBMLConstructorException)
2023-09-08T21:14:21,791         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:21,792   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2023-09-08T21:14:21,793   ./base/sbml/SBMLDocument.cpp:1938:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:21,793    1938 |   catch (SBMLConstructorException)
2023-09-08T21:14:21,794         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:21,795   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2023-09-08T21:14:21,796   ./base/sbml/SBMLDocument.cpp:1954:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:14:21,797    1954 |   catch (SBMLConstructorException)
2023-09-08T21:14:21,797         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:14:22,593   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T21:14:22,594   ./base/sbml/SBMLDocument.cpp:300:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:22,594     300 |   if (&rhs == NULL)
2023-09-08T21:14:22,595         |   ^~
2023-09-08T21:14:22,627   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T21:14:22,628   ./base/sbml/SBMLDocument.cpp:259:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:22,628     259 |   if (&orig == NULL)
2023-09-08T21:14:22,629         |   ^~
2023-09-08T21:14:31,737   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:31,737                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:31,738                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:31,738                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:14:31,739                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:14:31,739                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:14:31,740                    from ./base/sbml/SBMLError.cpp:41:
2023-09-08T21:14:31,740   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:31,741      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:31,742         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:31,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:31,743                    from ./base/sbml/SBMLError.cpp:33:
2023-09-08T21:14:31,744   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:31,745     117 |     struct unary_function
2023-09-08T21:14:31,745         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:36,540   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:36,541      86 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T21:14:36,541         |                        ^~~~~~~~~~~~~~
2023-09-08T21:14:36,542   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:14:36,542                    from ./base/sbml/SBMLErrorLog.cpp:34:
2023-09-08T21:14:36,543   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:36,544     117 |     struct unary_function
2023-09-08T21:14:36,544         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:40,297   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:40,298                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:40,298                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:40,299                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:14:40,300                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:14:40,300                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:14:40,301                    from ./base/sbml/SBMLNamespaces.cpp:35:
2023-09-08T21:14:40,301   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:40,302      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:40,303         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:40,304   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:40,304                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:14:40,305                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:14:40,306                    from ./base/sbml/SBMLNamespaces.cpp:34:
2023-09-08T21:14:40,306   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:40,307     117 |     struct unary_function
2023-09-08T21:14:40,307         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:40,676   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T21:14:40,677   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:14:40,677     175 |   if (&orig == NULL)
2023-09-08T21:14:40,678         |             ^
2023-09-08T21:14:40,679   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2023-09-08T21:14:40,679     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2023-09-08T21:14:40,680         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:14:40,681   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T21:14:40,682   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:14:40,682     225 |   if (&rhs == NULL)
2023-09-08T21:14:40,683         |            ^
2023-09-08T21:14:40,683   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2023-09-08T21:14:40,684     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2023-09-08T21:14:40,685         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:41,243   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T21:14:41,244   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:41,244     175 |   if (&orig == NULL)
2023-09-08T21:14:41,245         |   ^~
2023-09-08T21:14:41,245   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T21:14:41,246   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:41,247     225 |   if (&rhs == NULL)
2023-09-08T21:14:41,247         |   ^~
2023-09-08T21:14:46,185   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:46,185                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:46,186                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:46,187                    from ./base/sbml/SBMLReader.cpp:39:
2023-09-08T21:14:46,188   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:46,188      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:46,189         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:46,189   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:46,190                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:14:46,191                    from ./base/sbml/SBMLReader.cpp:33:
2023-09-08T21:14:46,191   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:46,192     117 |     struct unary_function
2023-09-08T21:14:46,193         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:46,476   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2023-09-08T21:14:46,477   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2023-09-08T21:14:46,478     139 |   if (&xml == NULL) return NULL;
2023-09-08T21:14:46,479         |            ^
2023-09-08T21:14:46,479   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2023-09-08T21:14:46,480     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2023-09-08T21:14:46,480         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:14:46,987   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:14:46,988     139 |   if (&xml == NULL) return NULL;
2023-09-08T21:14:46,988         |   ^~
2023-09-08T21:14:50,864   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:50,864                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:50,865                    from ./base/sbml/SBMLTransforms.cpp:33:
2023-09-08T21:14:50,865   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:50,866      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:50,866         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:50,867   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:50,867                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:14:50,868                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:14:50,868                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:14:50,869                    from ./base//sbml/SBase.h:145,
2023-09-08T21:14:50,870                    from ./base//sbml/SBMLTransforms.h:45:
2023-09-08T21:14:50,870   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:50,871     117 |     struct unary_function
2023-09-08T21:14:50,871         |            ^~~~~~~~~~~~~~
2023-09-08T21:14:59,059   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:14:59,060                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:14:59,060                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:14:59,061                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:14:59,062                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:14:59,063                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2023-09-08T21:14:59,063   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:14:59,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:14:59,065         |                           ^~~~~~~~~~~~~~
2023-09-08T21:14:59,065   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:14:59,066                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:14:59,067                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:14:59,068                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:14:59,068   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:14:59,069     117 |     struct unary_function
2023-09-08T21:14:59,069         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:03,072   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:15:03,073                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:15:03,074                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:15:03,075                    from ./base/sbml/SBMLVisitor.cpp:34:
2023-09-08T21:15:03,075   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:03,076      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:03,076         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:03,077   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:03,078                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:15:03,079                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:15:03,080                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:15:03,080   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:03,080     117 |     struct unary_function
2023-09-08T21:15:03,081         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:08,269   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:15:08,270                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:15:08,270                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:15:08,271                    from ./base/sbml/SBMLWriter.cpp:42:
2023-09-08T21:15:08,271   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:08,271      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:08,272         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:08,272   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:08,273                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:15:08,273                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:15:08,274                    from /usr/include/c++/12/ios:42,
2023-09-08T21:15:08,274                    from ./base/sbml/SBMLWriter.cpp:33:
2023-09-08T21:15:08,275   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:08,275     117 |     struct unary_function
2023-09-08T21:15:08,276         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:08,585   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T21:15:08,585   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:15:08,586      85 |   if (&(name) == NULL)
2023-09-08T21:15:08,587         |               ^
2023-09-08T21:15:08,588   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2023-09-08T21:15:08,588      83 | SBMLWriter::setProgramName (const std::string& name)
2023-09-08T21:15:08,589         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:08,590   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T21:15:08,590   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2023-09-08T21:15:08,591     109 |   if (&(version) == NULL)
2023-09-08T21:15:08,592         |                  ^
2023-09-08T21:15:08,593   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2023-09-08T21:15:08,593     107 | SBMLWriter::setProgramVersion (const std::string& version)
2023-09-08T21:15:08,594         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:15:09,148   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T21:15:09,149   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:09,150      85 |   if (&(name) == NULL)
2023-09-08T21:15:09,150         |   ^~
2023-09-08T21:15:09,151   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T21:15:09,152   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:09,152     109 |   if (&(version) == NULL)
2023-09-08T21:15:09,153         |   ^~
2023-09-08T21:15:12,869   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:12,870     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2023-09-08T21:15:12,870         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:12,871   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:12,872                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:15:12,873                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:15:12,873                    from /usr/include/c++/12/iomanip:40,
2023-09-08T21:15:12,873                    from ./base/sbml/SBO.cpp:33:
2023-09-08T21:15:12,874   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:12,874     117 |     struct unary_function
2023-09-08T21:15:12,875         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:21,259   In file included from ./base//sbml/Parameter.h:169,
2023-09-08T21:15:21,260                    from ./base//sbml/KineticLaw.h:169,
2023-09-08T21:15:21,260                    from ./base/sbml/SBase.cpp:46:
2023-09-08T21:15:21,261   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:21,262      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:21,262         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:21,263   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:21,263                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:15:21,264                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:15:21,264                    from /usr/include/c++/12/ios:42,
2023-09-08T21:15:21,265                    from /usr/include/c++/12/istream:38,
2023-09-08T21:15:21,266                    from /usr/include/c++/12/sstream:38,
2023-09-08T21:15:21,266                    from ./base/sbml/SBase.cpp:33:
2023-09-08T21:15:21,267   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:21,268     117 |     struct unary_function
2023-09-08T21:15:21,268         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:21,759   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:21,760      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2023-09-08T21:15:21,761         |                                    ^~~~~~~~~~~~~~
2023-09-08T21:15:21,762   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:21,762     117 |     struct unary_function
2023-09-08T21:15:21,763         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:21,764   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:21,765      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2023-09-08T21:15:21,765         |                                   ^~~~~~~~~~~~~~
2023-09-08T21:15:21,766   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:21,767     117 |     struct unary_function
2023-09-08T21:15:21,767         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:21,789   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T21:15:21,790   ./base/sbml/SBase.cpp:382:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:15:21,791     382 |   if (&orig == NULL)
2023-09-08T21:15:21,791         |             ^
2023-09-08T21:15:21,792   ./base/sbml/SBase.cpp:380:27: note: ‘orig’ declared here
2023-09-08T21:15:21,793     380 | SBase::SBase(const SBase& orig)
2023-09-08T21:15:21,794         |              ~~~~~~~~~~~~~^~~~
2023-09-08T21:15:21,802   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T21:15:21,803   ./base/sbml/SBase.cpp:495:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:15:21,803     495 |   if (&rhs == NULL)
2023-09-08T21:15:21,804         |            ^
2023-09-08T21:15:21,805   ./base/sbml/SBase.cpp:493:38: note: ‘rhs’ declared here
2023-09-08T21:15:21,806     493 | SBase& SBase::operator=(const SBase& rhs)
2023-09-08T21:15:21,806         |                         ~~~~~~~~~~~~~^~~
2023-09-08T21:15:21,826   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T21:15:21,826   ./base/sbml/SBase.cpp:1164:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T21:15:21,827    1164 |   if (&(metaid) == NULL)
2023-09-08T21:15:21,827         |                 ^
2023-09-08T21:15:21,828   ./base/sbml/SBase.cpp:1162:38: note: ‘metaid’ declared here
2023-09-08T21:15:21,829    1162 | SBase::setMetaId (const std::string& metaid)
2023-09-08T21:15:21,829         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:15:21,834   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T21:15:21,835   ./base/sbml/SBase.cpp:1349:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2023-09-08T21:15:21,836    1349 |   if (&(annotation) == NULL)
2023-09-08T21:15:21,836         |                     ^
2023-09-08T21:15:21,837   ./base/sbml/SBase.cpp:1347:42: note: ‘annotation’ declared here
2023-09-08T21:15:21,837    1347 | SBase::setAnnotation (const std::string& annotation)
2023-09-08T21:15:21,838         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:15:21,855   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T21:15:21,856   ./base/sbml/SBase.cpp:1746:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2023-09-08T21:15:21,856    1746 |   if (&(notes) == NULL)
2023-09-08T21:15:21,857         |                ^
2023-09-08T21:15:21,858   ./base/sbml/SBase.cpp:1743:36: note: ‘notes’ declared here
2023-09-08T21:15:21,859    1743 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2023-09-08T21:15:21,859         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:15:21,892   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T21:15:21,892   ./base/sbml/SBase.cpp:2396:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2023-09-08T21:15:21,893    2396 |   if (&(sboid) == NULL)
2023-09-08T21:15:21,894         |                ^
2023-09-08T21:15:21,895   ./base/sbml/SBase.cpp:2394:39: note: ‘sboid’ declared here
2023-09-08T21:15:21,896    2394 | SBase::setSBOTerm (const std::string &sboid)
2023-09-08T21:15:21,896         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:15:21,958   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2023-09-08T21:15:21,959   ./base/sbml/SBase.cpp:3701:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2023-09-08T21:15:21,960    3701 |   if (&pkgName == NULL)
2023-09-08T21:15:21,960         |                ^
2023-09-08T21:15:21,961   ./base/sbml/SBase.cpp:3700:22: note: ‘pkgName’ declared here
2023-09-08T21:15:21,962    3700 |   const std::string& pkgName = getPackageName();
2023-09-08T21:15:21,962         |                      ^~~~~~~
2023-09-08T21:15:22,148   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T21:15:22,149   ./base/sbml/SBase.cpp:6021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:15:22,150    6021 |   if (&node == NULL) return;
2023-09-08T21:15:22,151         |             ^
2023-09-08T21:15:22,152   ./base/sbml/SBase.cpp:6019:22: note: ‘node’ declared here
2023-09-08T21:15:22,152    6019 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2023-09-08T21:15:22,153         |             ~~~~~~~~~^~~~
2023-09-08T21:15:22,945   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T21:15:22,946   ./base/sbml/SBase.cpp:2396:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:22,946    2396 |   if (&(sboid) == NULL)
2023-09-08T21:15:22,947         |   ^~
2023-09-08T21:15:22,953   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T21:15:22,954   ./base/sbml/SBase.cpp:1349:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:22,954    1349 |   if (&(annotation) == NULL)
2023-09-08T21:15:22,955         |   ^~
2023-09-08T21:15:22,975   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T21:15:22,975   ./base/sbml/SBase.cpp:1164:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:22,976    1164 |   if (&(metaid) == NULL)
2023-09-08T21:15:22,976         |   ^~
2023-09-08T21:15:23,024   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T21:15:23,025   ./base/sbml/SBase.cpp:495:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:23,025     495 |   if (&rhs == NULL)
2023-09-08T21:15:23,026         |   ^~
2023-09-08T21:15:23,032   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T21:15:23,032   ./base/sbml/SBase.cpp:382:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:23,033     382 |   if (&orig == NULL)
2023-09-08T21:15:23,033         |   ^~
2023-09-08T21:15:23,044   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T21:15:23,045   ./base/sbml/SBase.cpp:1746:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:23,045    1746 |   if (&(notes) == NULL)
2023-09-08T21:15:23,046         |   ^~
2023-09-08T21:15:23,050   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T21:15:23,051   ./base/sbml/SBase.cpp:6021:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:23,051    6021 |   if (&node == NULL) return;
2023-09-08T21:15:23,052         |   ^~
2023-09-08T21:15:40,317   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:15:40,317                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:15:40,318                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:15:40,319                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2023-09-08T21:15:40,320   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:40,320      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:40,321         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:40,322   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:40,322                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:15:40,323                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:15:40,323                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:15:40,324                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2023-09-08T21:15:40,325   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:40,326     117 |     struct unary_function
2023-09-08T21:15:40,326         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:40,632   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T21:15:40,632   ./base/sbml/SimpleSpeciesReference.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:15:40,633      98 |   if (&orig == NULL)
2023-09-08T21:15:40,634         |             ^
2023-09-08T21:15:40,635   ./base/sbml/SimpleSpeciesReference.cpp:95:78: note: ‘orig’ declared here
2023-09-08T21:15:40,635      95 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2023-09-08T21:15:40,636         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:40,636   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T21:15:40,637   ./base/sbml/SimpleSpeciesReference.cpp:116:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:15:40,638     116 |   if (&rhs == NULL)
2023-09-08T21:15:40,638         |            ^
2023-09-08T21:15:40,639   ./base/sbml/SimpleSpeciesReference.cpp:114:89: note: ‘rhs’ declared here
2023-09-08T21:15:40,639     114 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2023-09-08T21:15:40,640         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:40,641   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T21:15:40,642   ./base/sbml/SimpleSpeciesReference.cpp:216:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:40,642     216 |   if (&(sid) == NULL)
2023-09-08T21:15:40,643         |              ^
2023-09-08T21:15:40,643   ./base/sbml/SimpleSpeciesReference.cpp:214:56: note: ‘sid’ declared here
2023-09-08T21:15:40,644     214 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2023-09-08T21:15:40,645         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:40,645   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T21:15:40,646   ./base/sbml/SimpleSpeciesReference.cpp:238:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:40,647     238 |   if (&(sid) == NULL)
2023-09-08T21:15:40,647         |              ^
2023-09-08T21:15:40,648   ./base/sbml/SimpleSpeciesReference.cpp:236:51: note: ‘sid’ declared here
2023-09-08T21:15:40,649     236 | SimpleSpeciesReference::setId (const std::string& sid)
2023-09-08T21:15:40,650         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:40,651   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T21:15:40,651   ./base/sbml/SimpleSpeciesReference.cpp:302:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:15:40,652     302 |   if (&(name) == NULL)
2023-09-08T21:15:40,653         |               ^
2023-09-08T21:15:40,653   ./base/sbml/SimpleSpeciesReference.cpp:300:53: note: ‘name’ declared here
2023-09-08T21:15:40,654     300 | SimpleSpeciesReference::setName (const std::string& name)
2023-09-08T21:15:40,655         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:41,169   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T21:15:41,170   ./base/sbml/SimpleSpeciesReference.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:41,171      98 |   if (&orig == NULL)
2023-09-08T21:15:41,172         |   ^~
2023-09-08T21:15:41,172   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T21:15:41,173   ./base/sbml/SimpleSpeciesReference.cpp:116:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:41,174     116 |   if (&rhs == NULL)
2023-09-08T21:15:41,174         |   ^~
2023-09-08T21:15:41,175   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T21:15:41,175   ./base/sbml/SimpleSpeciesReference.cpp:216:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:41,176     216 |   if (&(sid) == NULL)
2023-09-08T21:15:41,176         |   ^~
2023-09-08T21:15:41,177   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T21:15:41,177   ./base/sbml/SimpleSpeciesReference.cpp:238:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:41,178     238 |   if (&(sid) == NULL)
2023-09-08T21:15:41,178         |   ^~
2023-09-08T21:15:41,179   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T21:15:41,179   ./base/sbml/SimpleSpeciesReference.cpp:302:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:41,180     302 |   if (&(name) == NULL)
2023-09-08T21:15:41,180         |   ^~
2023-09-08T21:15:45,781   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:15:45,781                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:15:45,782                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:15:45,783                    from ./base/sbml/Species.cpp:42:
2023-09-08T21:15:45,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:45,784      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:45,784         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:45,785   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:45,786                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:15:45,787                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:15:45,787                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:15:45,788                    from ./base/sbml/Species.cpp:35:
2023-09-08T21:15:45,789   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:45,790     117 |     struct unary_function
2023-09-08T21:15:45,790         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:46,085   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T21:15:46,086   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:15:46,087     167 |   if (&orig == NULL)
2023-09-08T21:15:46,087         |             ^
2023-09-08T21:15:46,088   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2023-09-08T21:15:46,089     164 | Species::Species(const Species& orig) :
2023-09-08T21:15:46,089         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:46,090   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T21:15:46,091   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:15:46,091     204 |   if (&rhs == NULL)
2023-09-08T21:15:46,092         |            ^
2023-09-08T21:15:46,093   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2023-09-08T21:15:46,093     202 | Species& Species::operator=(const Species& rhs)
2023-09-08T21:15:46,094         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,098   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T21:15:46,099   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,100     616 |   if (&(sid) == NULL)
2023-09-08T21:15:46,101         |              ^
2023-09-08T21:15:46,101   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2023-09-08T21:15:46,102     605 | Species::setId (const std::string& sid)
2023-09-08T21:15:46,102         |                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,103   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T21:15:46,103   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:15:46,104     641 |   if (&(name) == NULL)
2023-09-08T21:15:46,105         |               ^
2023-09-08T21:15:46,105   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2023-09-08T21:15:46,106     636 | Species::setName (const std::string& name)
2023-09-08T21:15:46,106         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:46,107   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T21:15:46,108   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,108     671 |   if (&(sid) == NULL)
2023-09-08T21:15:46,109         |              ^
2023-09-08T21:15:46,109   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2023-09-08T21:15:46,110     669 | Species::setSpeciesType (const std::string& sid)
2023-09-08T21:15:46,111         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,111   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T21:15:46,112   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,112     698 |   if (&(sid) == NULL)
2023-09-08T21:15:46,113         |              ^
2023-09-08T21:15:46,114   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2023-09-08T21:15:46,115     696 | Species::setCompartment (const std::string& sid)
2023-09-08T21:15:46,115         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,116   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T21:15:46,117   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,118     757 |   if (&(sid) == NULL)
2023-09-08T21:15:46,119         |              ^
2023-09-08T21:15:46,119   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2023-09-08T21:15:46,120     755 | Species::setSubstanceUnits (const std::string& sid)
2023-09-08T21:15:46,121         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,122   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T21:15:46,122   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,123     779 |   if (&(sid) == NULL)
2023-09-08T21:15:46,124         |              ^
2023-09-08T21:15:46,124   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2023-09-08T21:15:46,125     777 | Species::setSpatialSizeUnits (const std::string& sid)
2023-09-08T21:15:46,126         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,126   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T21:15:46,127   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,128     890 |   if (&(sid) == NULL)
2023-09-08T21:15:46,129         |              ^
2023-09-08T21:15:46,129   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2023-09-08T21:15:46,130     888 | Species::setConversionFactor (const std::string& sid)
2023-09-08T21:15:46,131         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,181   ./base/sbml/Species.cpp: At global scope:
2023-09-08T21:15:46,182   ./base/sbml/Species.cpp:1915:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:46,182    1915 | struct IdEqS : public unary_function<SBase*, bool>
2023-09-08T21:15:46,183         |                       ^~~~~~~~~~~~~~
2023-09-08T21:15:46,183   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:46,184     117 |     struct unary_function
2023-09-08T21:15:46,184         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:46,186   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T21:15:46,186   ./base/sbml/Species.cpp:1938:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,187    1938 |   if (&(sid) == NULL)
2023-09-08T21:15:46,187         |              ^
2023-09-08T21:15:46,188   ./base/sbml/Species.cpp:1934:40: note: ‘sid’ declared here
2023-09-08T21:15:46,189    1934 | ListOfSpecies::get (const std::string& sid) const
2023-09-08T21:15:46,189         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,191   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T21:15:46,191   ./base/sbml/Species.cpp:1965:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:46,192    1965 |   if (&(sid) != NULL)
2023-09-08T21:15:46,192         |              ^
2023-09-08T21:15:46,193   ./base/sbml/Species.cpp:1960:43: note: ‘sid’ declared here
2023-09-08T21:15:46,194    1960 | ListOfSpecies::remove (const std::string& sid)
2023-09-08T21:15:46,194         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:46,199   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2023-09-08T21:15:46,200   ./base/sbml/Species.cpp:2043:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:46,200    2043 |   catch (SBMLConstructorException)
2023-09-08T21:15:46,201         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:46,202   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:15:46,203   ./base/sbml/Species.cpp:2059:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:46,204    2059 |   catch (SBMLConstructorException)
2023-09-08T21:15:46,204         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:46,823   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T21:15:46,824   ./base/sbml/Species.cpp:1938:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,825    1938 |   if (&(sid) == NULL)
2023-09-08T21:15:46,826         |   ^~
2023-09-08T21:15:46,827   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T21:15:46,828   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,829     167 |   if (&orig == NULL)
2023-09-08T21:15:46,829         |   ^~
2023-09-08T21:15:46,830   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T21:15:46,831   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,832     204 |   if (&rhs == NULL)
2023-09-08T21:15:46,833         |   ^~
2023-09-08T21:15:46,833   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T21:15:46,834   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,835     616 |   if (&(sid) == NULL)
2023-09-08T21:15:46,836         |   ^~
2023-09-08T21:15:46,836   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T21:15:46,837   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,837     641 |   if (&(name) == NULL)
2023-09-08T21:15:46,838         |   ^~
2023-09-08T21:15:46,838   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T21:15:46,839   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,839     671 |   if (&(sid) == NULL)
2023-09-08T21:15:46,840         |   ^~
2023-09-08T21:15:46,840   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T21:15:46,841   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,841     698 |   if (&(sid) == NULL)
2023-09-08T21:15:46,842         |   ^~
2023-09-08T21:15:46,842   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T21:15:46,843   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,843     757 |   if (&(sid) == NULL)
2023-09-08T21:15:46,844         |   ^~
2023-09-08T21:15:46,845   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T21:15:46,845   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,846     779 |   if (&(sid) == NULL)
2023-09-08T21:15:46,847         |   ^~
2023-09-08T21:15:46,848   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T21:15:46,849   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,849     890 |   if (&(sid) == NULL)
2023-09-08T21:15:46,850         |   ^~
2023-09-08T21:15:46,851   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T21:15:46,851   ./base/sbml/Species.cpp:1965:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:46,852    1965 |   if (&(sid) != NULL)
2023-09-08T21:15:46,853         |   ^~
2023-09-08T21:15:56,803   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:15:56,804                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:15:56,804                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:15:56,805                    from ./base/sbml/SpeciesReference.cpp:48:
2023-09-08T21:15:56,806   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:56,806      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:15:56,807         |                           ^~~~~~~~~~~~~~
2023-09-08T21:15:56,808   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:15:56,809                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:15:56,809                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:15:56,810                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:15:56,811                    from ./base/sbml/SpeciesReference.cpp:35:
2023-09-08T21:15:56,811   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:56,812     117 |     struct unary_function
2023-09-08T21:15:56,813         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:57,115   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T21:15:57,116   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:15:57,117     129 |   if (&orig == NULL)
2023-09-08T21:15:57,117         |             ^
2023-09-08T21:15:57,118   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2023-09-08T21:15:57,118     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2023-09-08T21:15:57,119         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:15:57,119   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T21:15:57,120   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:15:57,120     157 |   if (&rhs == NULL)
2023-09-08T21:15:57,121         |            ^
2023-09-08T21:15:57,121   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2023-09-08T21:15:57,122     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2023-09-08T21:15:57,123         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:57,161   ./base/sbml/SpeciesReference.cpp: At global scope:
2023-09-08T21:15:57,162   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:15:57,163    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2023-09-08T21:15:57,163         |                         ^~~~~~~~~~~~~~
2023-09-08T21:15:57,164   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:15:57,164     117 |     struct unary_function
2023-09-08T21:15:57,165         |            ^~~~~~~~~~~~~~
2023-09-08T21:15:57,168   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T21:15:57,168   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:57,169    1251 |   if (&(sid) == NULL)
2023-09-08T21:15:57,170         |              ^
2023-09-08T21:15:57,170   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2023-09-08T21:15:57,171    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2023-09-08T21:15:57,171         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:57,173   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T21:15:57,173   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:15:57,174    1279 |   if (&(sid) != NULL)
2023-09-08T21:15:57,175         |              ^
2023-09-08T21:15:57,175   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2023-09-08T21:15:57,176    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2023-09-08T21:15:57,176         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:15:57,188   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T21:15:57,189   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:57,189    1448 |   catch (SBMLConstructorException)
2023-09-08T21:15:57,190         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:57,191   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:15:57,191   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:57,192    1464 |   catch (SBMLConstructorException)
2023-09-08T21:15:57,193         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:57,193   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2023-09-08T21:15:57,194   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:57,194    1480 |   catch (SBMLConstructorException)
2023-09-08T21:15:57,195         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:57,196   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:15:57,196   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:15:57,197    1496 |   catch (SBMLConstructorException)
2023-09-08T21:15:57,197         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:15:57,784   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T21:15:57,785   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:57,785    1251 |   if (&(sid) == NULL)
2023-09-08T21:15:57,786         |   ^~
2023-09-08T21:15:57,788   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T21:15:57,788   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:57,789     129 |   if (&orig == NULL)
2023-09-08T21:15:57,790         |   ^~
2023-09-08T21:15:57,790   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T21:15:57,791   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:57,792     157 |   if (&rhs == NULL)
2023-09-08T21:15:57,792         |   ^~
2023-09-08T21:15:57,799   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T21:15:57,800   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:15:57,801    1279 |   if (&(sid) != NULL)
2023-09-08T21:15:57,801         |   ^~
2023-09-08T21:16:03,710   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:03,711                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:16:03,711                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:16:03,712                    from ./base/sbml/SpeciesType.cpp:41:
2023-09-08T21:16:03,712   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:03,713      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:03,713         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:03,714   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:03,715                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:03,715                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:03,716                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:16:03,716                    from ./base/sbml/SpeciesType.cpp:33:
2023-09-08T21:16:03,717   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:03,718     117 |     struct unary_function
2023-09-08T21:16:03,718         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:04,007   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T21:16:04,008   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:04,008      92 |   if (&orig == NULL)
2023-09-08T21:16:04,009         |             ^
2023-09-08T21:16:04,010   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2023-09-08T21:16:04,010      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2023-09-08T21:16:04,011         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:04,011   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T21:16:04,012   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:04,012     109 |   if (&rhs == NULL)
2023-09-08T21:16:04,013         |            ^
2023-09-08T21:16:04,014   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2023-09-08T21:16:04,014     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2023-09-08T21:16:04,015         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:04,015   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T21:16:04,016   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:04,017     206 |   if (&(sid) == NULL)
2023-09-08T21:16:04,017         |              ^
2023-09-08T21:16:04,018   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2023-09-08T21:16:04,018     195 | SpeciesType::setId (const std::string& sid)
2023-09-08T21:16:04,019         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:04,020   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T21:16:04,021   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:16:04,021     231 |   if (&(name) == NULL)
2023-09-08T21:16:04,022         |               ^
2023-09-08T21:16:04,023   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2023-09-08T21:16:04,024     226 | SpeciesType::setName (const std::string& name)
2023-09-08T21:16:04,025         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:04,032   ./base/sbml/SpeciesType.cpp: At global scope:
2023-09-08T21:16:04,033   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:04,034     541 | struct IdEqST : public unary_function<SBase*, bool>
2023-09-08T21:16:04,035         |                        ^~~~~~~~~~~~~~
2023-09-08T21:16:04,035   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:04,036     117 |     struct unary_function
2023-09-08T21:16:04,037         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:04,039   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T21:16:04,039   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:04,040     566 |   if (&(sid) == NULL)
2023-09-08T21:16:04,041         |              ^
2023-09-08T21:16:04,042   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2023-09-08T21:16:04,042     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2023-09-08T21:16:04,043         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:04,045   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T21:16:04,046   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:04,047     594 |   if (&(sid) != NULL)
2023-09-08T21:16:04,047         |              ^
2023-09-08T21:16:04,048   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2023-09-08T21:16:04,049     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2023-09-08T21:16:04,049         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:04,054   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2023-09-08T21:16:04,054   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:04,055     673 |   catch (SBMLConstructorException)
2023-09-08T21:16:04,055         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:04,056   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:16:04,057   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:04,057     689 |   catch (SBMLConstructorException)
2023-09-08T21:16:04,058         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:04,617   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T21:16:04,618   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,618     566 |   if (&(sid) == NULL)
2023-09-08T21:16:04,619         |   ^~
2023-09-08T21:16:04,620   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T21:16:04,621   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,622      92 |   if (&orig == NULL)
2023-09-08T21:16:04,622         |   ^~
2023-09-08T21:16:04,623   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T21:16:04,624   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,624     109 |   if (&rhs == NULL)
2023-09-08T21:16:04,625         |   ^~
2023-09-08T21:16:04,626   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T21:16:04,626   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,627     206 |   if (&(sid) == NULL)
2023-09-08T21:16:04,628         |   ^~
2023-09-08T21:16:04,628   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T21:16:04,629   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,630     231 |   if (&(name) == NULL)
2023-09-08T21:16:04,630         |   ^~
2023-09-08T21:16:04,631   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T21:16:04,632   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:04,632     594 |   if (&(sid) != NULL)
2023-09-08T21:16:04,633         |   ^~
2023-09-08T21:16:09,603   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:09,603                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:16:09,604                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:16:09,605                    from ./base/sbml/StoichiometryMath.cpp:46:
2023-09-08T21:16:09,606   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:09,607      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:09,608         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:09,608   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:09,609                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:09,610                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:09,611                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:16:09,611                    from ./base/sbml/StoichiometryMath.cpp:33:
2023-09-08T21:16:09,612   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:09,612     117 |     struct unary_function
2023-09-08T21:16:09,613         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:09,902   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T21:16:09,905   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:09,908      98 |   if (&orig == NULL)
2023-09-08T21:16:09,911         |             ^
2023-09-08T21:16:09,914   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2023-09-08T21:16:09,917      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2023-09-08T21:16:09,918         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:09,920   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T21:16:09,921   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:09,923     120 |   if (&rhs == NULL)
2023-09-08T21:16:09,924         |            ^
2023-09-08T21:16:09,926   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2023-09-08T21:16:09,927     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2023-09-08T21:16:09,929         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:09,931   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2023-09-08T21:16:09,932   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:09,934     627 |   catch (SBMLConstructorException)
2023-09-08T21:16:09,935         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:09,937   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:16:09,938   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:09,940     643 |   catch (SBMLConstructorException)
2023-09-08T21:16:09,941         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:10,430   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T21:16:10,431   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:10,432      98 |   if (&orig == NULL)
2023-09-08T21:16:10,432         |   ^~
2023-09-08T21:16:10,433   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T21:16:10,434   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:10,435     120 |   if (&rhs == NULL)
2023-09-08T21:16:10,435         |   ^~
2023-09-08T21:16:18,662   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:18,663                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:16:18,664                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:16:18,664                    from ./base/sbml/Trigger.cpp:46:
2023-09-08T21:16:18,665   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:18,666      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:18,666         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:18,667   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:18,667                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:18,668                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:18,668                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:16:18,669                    from ./base/sbml/Trigger.cpp:33:
2023-09-08T21:16:18,669   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:18,670     117 |     struct unary_function
2023-09-08T21:16:18,670         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:18,953   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T21:16:18,954   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:18,954     106 |   if (&orig == NULL)
2023-09-08T21:16:18,955         |             ^
2023-09-08T21:16:18,956   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2023-09-08T21:16:18,956     102 | Trigger::Trigger (const Trigger& orig) :
2023-09-08T21:16:18,957         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:18,957   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T21:16:18,958   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:18,958     131 |   if (&rhs == NULL)
2023-09-08T21:16:18,959         |            ^
2023-09-08T21:16:18,960   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2023-09-08T21:16:18,961     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2023-09-08T21:16:18,962         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:18,979   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2023-09-08T21:16:18,980   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:18,981     670 |   catch (SBMLConstructorException)
2023-09-08T21:16:18,982         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:18,982   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:16:18,983   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:18,984     686 |   catch (SBMLConstructorException)
2023-09-08T21:16:18,984         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:19,482   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T21:16:19,482   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:19,483     106 |   if (&orig == NULL)
2023-09-08T21:16:19,484         |   ^~
2023-09-08T21:16:19,484   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T21:16:19,485   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:19,486     131 |   if (&rhs == NULL)
2023-09-08T21:16:19,486         |   ^~
2023-09-08T21:16:23,834   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:23,835                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:16:23,836                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:16:23,837                    from ./base/sbml/Unit.cpp:41:
2023-09-08T21:16:23,837   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:23,838      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:23,838         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:23,839   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:23,839                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:23,840                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:23,840                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:16:23,841                    from ./base/sbml/Unit.cpp:33:
2023-09-08T21:16:23,842   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:23,842     117 |     struct unary_function
2023-09-08T21:16:23,843         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:24,127   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T21:16:24,128   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:24,129     150 |   if (&orig == NULL)
2023-09-08T21:16:24,129         |             ^
2023-09-08T21:16:24,130   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2023-09-08T21:16:24,130     147 | Unit::Unit(const Unit& orig) :
2023-09-08T21:16:24,131         |            ~~~~~~~~~~~~^~~~
2023-09-08T21:16:24,131   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T21:16:24,132   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:24,133     179 |   if (&rhs == NULL)
2023-09-08T21:16:24,133         |            ^
2023-09-08T21:16:24,134   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2023-09-08T21:16:24,135     177 | Unit& Unit::operator=(const Unit& rhs)
2023-09-08T21:16:24,136         |                       ~~~~~~~~~~~~^~~
2023-09-08T21:16:24,232   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2023-09-08T21:16:24,233   ./base/sbml/Unit.cpp:2217:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:24,234    2217 |   catch (SBMLConstructorException)
2023-09-08T21:16:24,235         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:24,235   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:16:24,236   ./base/sbml/Unit.cpp:2233:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:24,237    2233 |   catch (SBMLConstructorException)
2023-09-08T21:16:24,238         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:24,835   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T21:16:24,835   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:24,836     150 |   if (&orig == NULL)
2023-09-08T21:16:24,837         |   ^~
2023-09-08T21:16:24,837   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T21:16:24,838   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:24,839     179 |   if (&rhs == NULL)
2023-09-08T21:16:24,839         |   ^~
2023-09-08T21:16:32,005   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:32,005                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:16:32,006                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:16:32,007                    from ./base/sbml/UnitDefinition.cpp:44:
2023-09-08T21:16:32,008   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:32,008      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:32,009         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:32,010   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:32,010                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:32,011                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:32,011                    from ./base//sbml/xml/XMLNode.h:151,
2023-09-08T21:16:32,012                    from ./base/sbml/UnitDefinition.cpp:34:
2023-09-08T21:16:32,012   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:32,013     117 |     struct unary_function
2023-09-08T21:16:32,013         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:32,305   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T21:16:32,305   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:32,306     104 |   if (&orig == NULL)
2023-09-08T21:16:32,306         |             ^
2023-09-08T21:16:32,307   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2023-09-08T21:16:32,308     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2023-09-08T21:16:32,308         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:32,309   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T21:16:32,309   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:32,310     123 |   if (&rhs == NULL)
2023-09-08T21:16:32,311         |            ^
2023-09-08T21:16:32,311   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2023-09-08T21:16:32,312     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2023-09-08T21:16:32,313         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:32,319   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T21:16:32,319   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:32,320     262 |   if (&(sid) == NULL)
2023-09-08T21:16:32,321         |              ^
2023-09-08T21:16:32,321   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2023-09-08T21:16:32,322     251 | UnitDefinition::setId (const std::string& sid)
2023-09-08T21:16:32,323         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:32,323   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T21:16:32,324   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:16:32,325     287 |   if (&(name) == NULL)
2023-09-08T21:16:32,325         |               ^
2023-09-08T21:16:32,326   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2023-09-08T21:16:32,327     282 | UnitDefinition::setName (const std::string& name)
2023-09-08T21:16:32,328         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:32,389   ./base/sbml/UnitDefinition.cpp: At global scope:
2023-09-08T21:16:32,390   ./base/sbml/UnitDefinition.cpp:1780:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:32,391    1780 | struct IdEqUD : public unary_function<SBase*, bool>
2023-09-08T21:16:32,391         |                        ^~~~~~~~~~~~~~
2023-09-08T21:16:32,392   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:32,393     117 |     struct unary_function
2023-09-08T21:16:32,393         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:32,395   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T21:16:32,396   ./base/sbml/UnitDefinition.cpp:1805:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:32,396    1805 |   if (&(sid) == NULL)
2023-09-08T21:16:32,397         |              ^
2023-09-08T21:16:32,397   ./base/sbml/UnitDefinition.cpp:1801:48: note: ‘sid’ declared here
2023-09-08T21:16:32,398    1801 | ListOfUnitDefinitions::get (const std::string& sid) const
2023-09-08T21:16:32,399         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:32,402   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T21:16:32,403   ./base/sbml/UnitDefinition.cpp:1847:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:16:32,403    1847 |   if (&(sid) != NULL)
2023-09-08T21:16:32,404         |              ^
2023-09-08T21:16:32,404   ./base/sbml/UnitDefinition.cpp:1842:51: note: ‘sid’ declared here
2023-09-08T21:16:32,405    1842 | ListOfUnitDefinitions::remove (const std::string& sid)
2023-09-08T21:16:32,406         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:32,411   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2023-09-08T21:16:32,411   ./base/sbml/UnitDefinition.cpp:1925:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:32,412    1925 |   catch (SBMLConstructorException)
2023-09-08T21:16:32,412         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:32,413   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T21:16:32,414   ./base/sbml/UnitDefinition.cpp:1941:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T21:16:32,415    1941 |   catch (SBMLConstructorException)
2023-09-08T21:16:32,416         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:33,014   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T21:16:33,015   ./base/sbml/UnitDefinition.cpp:1805:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,016    1805 |   if (&(sid) == NULL)
2023-09-08T21:16:33,017         |   ^~
2023-09-08T21:16:33,017   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T21:16:33,018   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,019     123 |   if (&rhs == NULL)
2023-09-08T21:16:33,019         |   ^~
2023-09-08T21:16:33,021   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T21:16:33,021   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,022     262 |   if (&(sid) == NULL)
2023-09-08T21:16:33,023         |   ^~
2023-09-08T21:16:33,023   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T21:16:33,024   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,025     287 |   if (&(name) == NULL)
2023-09-08T21:16:33,025         |   ^~
2023-09-08T21:16:33,030   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T21:16:33,031   ./base/sbml/UnitDefinition.cpp:1847:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,032    1847 |   if (&(sid) != NULL)
2023-09-08T21:16:33,033         |   ^~
2023-09-08T21:16:33,036   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T21:16:33,036   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:33,037     104 |   if (&orig == NULL)
2023-09-08T21:16:33,037         |   ^~
2023-09-08T21:16:39,555   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T21:16:39,556   ./base/sbml/annotation/CVTerm.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:39,556     131 |   if (&orig == NULL)
2023-09-08T21:16:39,557         |             ^
2023-09-08T21:16:39,557   ./base/sbml/annotation/CVTerm.cpp:129:30: note: ‘orig’ declared here
2023-09-08T21:16:39,558     129 | CVTerm::CVTerm(const CVTerm& orig)
2023-09-08T21:16:39,559         |                ~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:39,559   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T21:16:39,560   ./base/sbml/annotation/CVTerm.cpp:151:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:39,560     151 |   if (&rhs == NULL)
2023-09-08T21:16:39,561         |            ^
2023-09-08T21:16:39,562   ./base/sbml/annotation/CVTerm.cpp:149:33: note: ‘rhs’ declared here
2023-09-08T21:16:39,562     149 | CVTerm::operator=(const CVTerm& rhs)
2023-09-08T21:16:39,563         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T21:16:39,563   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T21:16:39,564   ./base/sbml/annotation/CVTerm.cpp:257:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T21:16:39,565     257 |   if (&qualifier == NULL)
2023-09-08T21:16:39,566         |                  ^
2023-09-08T21:16:39,566   ./base/sbml/annotation/CVTerm.cpp:254:50: note: ‘qualifier’ declared here
2023-09-08T21:16:39,567     254 | CVTerm::setModelQualifierType(const std::string& qualifier)
2023-09-08T21:16:39,568         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:16:39,569   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T21:16:39,569   ./base/sbml/annotation/CVTerm.cpp:274:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T21:16:39,570     274 |   if (&qualifier == NULL)
2023-09-08T21:16:39,571         |                  ^
2023-09-08T21:16:39,571   ./base/sbml/annotation/CVTerm.cpp:271:55: note: ‘qualifier’ declared here
2023-09-08T21:16:39,572     271 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2023-09-08T21:16:39,573         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:16:39,573   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T21:16:39,574   ./base/sbml/annotation/CVTerm.cpp:394:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2023-09-08T21:16:39,575     394 |   if (&resource == NULL || resource.empty())
2023-09-08T21:16:39,576         |                 ^
2023-09-08T21:16:39,576   ./base/sbml/annotation/CVTerm.cpp:392:40: note: ‘resource’ declared here
2023-09-08T21:16:39,577     392 | CVTerm::addResource(const std::string& resource)
2023-09-08T21:16:39,578         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:16:39,992   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T21:16:39,993   ./base/sbml/annotation/CVTerm.cpp:257:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:39,993     257 |   if (&qualifier == NULL)
2023-09-08T21:16:39,994         |   ^~
2023-09-08T21:16:39,994   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T21:16:39,995   ./base/sbml/annotation/CVTerm.cpp:274:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:39,995     274 |   if (&qualifier == NULL)
2023-09-08T21:16:39,996         |   ^~
2023-09-08T21:16:39,996   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T21:16:39,997   ./base/sbml/annotation/CVTerm.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:39,997     131 |   if (&orig == NULL)
2023-09-08T21:16:39,998         |   ^~
2023-09-08T21:16:39,998   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T21:16:39,999   ./base/sbml/annotation/CVTerm.cpp:151:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:40,000     151 |   if (&rhs == NULL)
2023-09-08T21:16:40,000         |   ^~
2023-09-08T21:16:40,001   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T21:16:40,002   ./base/sbml/annotation/CVTerm.cpp:394:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:40,002     394 |   if (&resource == NULL || resource.empty())
2023-09-08T21:16:40,003         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:42,773   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T21:16:42,774   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T21:16:42,774      75 |   if (&(date) == NULL)
2023-09-08T21:16:42,775         |               ^
2023-09-08T21:16:42,776   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2023-09-08T21:16:42,776      72 | Date::Date (const std::string& date) :
2023-09-08T21:16:42,777         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:42,777   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T21:16:42,778   ./base/sbml/annotation/Date.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:42,778      92 |   if (&orig == NULL)
2023-09-08T21:16:42,779         |             ^
2023-09-08T21:16:42,780   ./base/sbml/annotation/Date.cpp:90:24: note: ‘orig’ declared here
2023-09-08T21:16:42,781      90 | Date::Date(const Date& orig)
2023-09-08T21:16:42,781         |            ~~~~~~~~~~~~^~~~
2023-09-08T21:16:42,782   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T21:16:42,783   ./base/sbml/annotation/Date.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:42,783     120 |   if (&rhs == NULL)
2023-09-08T21:16:42,784         |            ^
2023-09-08T21:16:42,784   ./base/sbml/annotation/Date.cpp:118:35: note: ‘rhs’ declared here
2023-09-08T21:16:42,785     118 | Date& Date::operator=(const Date& rhs)
2023-09-08T21:16:42,786         |                       ~~~~~~~~~~~~^~~
2023-09-08T21:16:42,786   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T21:16:42,787   ./base/sbml/annotation/Date.cpp:390:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T21:16:42,788     390 |   if (&(date) == NULL)
2023-09-08T21:16:42,789         |               ^
2023-09-08T21:16:42,789   ./base/sbml/annotation/Date.cpp:384:43: note: ‘date’ declared here
2023-09-08T21:16:42,790     384 | Date::setDateAsString (const std::string& date)
2023-09-08T21:16:42,790         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:43,222   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T21:16:43,222   ./base/sbml/annotation/Date.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:43,223      92 |   if (&orig == NULL)
2023-09-08T21:16:43,223         |   ^~
2023-09-08T21:16:43,224   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T21:16:43,224   ./base/sbml/annotation/Date.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:43,225     120 |   if (&rhs == NULL)
2023-09-08T21:16:43,226         |   ^~
2023-09-08T21:16:43,226   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T21:16:43,227   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:43,227      75 |   if (&(date) == NULL)
2023-09-08T21:16:43,228         |   ^~
2023-09-08T21:16:43,229   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T21:16:43,229   ./base/sbml/annotation/Date.cpp:390:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:43,230     390 |   if (&(date) == NULL)
2023-09-08T21:16:43,230         |   ^~
2023-09-08T21:16:43,434   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2023-09-08T21:16:43,435   ./base/sbml/annotation/Date.cpp:444:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T21:16:43,435     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T21:16:43,436         |                        ^~
2023-09-08T21:16:43,436   ./base/sbml/annotation/Date.cpp:444:20: note: directive argument in the range [10, 4294967295]
2023-09-08T21:16:43,437     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T21:16:43,438         |                    ^~~~~~~~
2023-09-08T21:16:43,438   ./base/sbml/annotation/Date.cpp:444:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2023-09-08T21:16:43,439     444 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T21:16:43,440         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,440   ./base/sbml/annotation/Date.cpp:450:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T21:16:43,441     450 |     sprintf(cdate, "%uT", mDay);
2023-09-08T21:16:43,442         |                       ^
2023-09-08T21:16:43,442   ./base/sbml/annotation/Date.cpp:450:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T21:16:43,443     450 |     sprintf(cdate, "%uT", mDay);
2023-09-08T21:16:43,443         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,444   ./base/sbml/annotation/Date.cpp:456:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T21:16:43,445     456 |     sprintf(cdate, "%u:", mHour);
2023-09-08T21:16:43,445         |                       ^
2023-09-08T21:16:43,446   ./base/sbml/annotation/Date.cpp:456:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T21:16:43,447     456 |     sprintf(cdate, "%u:", mHour);
2023-09-08T21:16:43,447         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,448   ./base/sbml/annotation/Date.cpp:462:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T21:16:43,449     462 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T21:16:43,450         |                       ^
2023-09-08T21:16:43,450   ./base/sbml/annotation/Date.cpp:462:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T21:16:43,451     462 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T21:16:43,451         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,452   ./base/sbml/annotation/Date.cpp:468:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T21:16:43,452     468 |     sprintf(cdate, "%u", mSecond);
2023-09-08T21:16:43,453         |                       ^
2023-09-08T21:16:43,453   ./base/sbml/annotation/Date.cpp:468:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T21:16:43,454     468 |     sprintf(cdate, "%u", mSecond);
2023-09-08T21:16:43,454         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,455   ./base/sbml/annotation/Date.cpp:487:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T21:16:43,455     487 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T21:16:43,456         |                         ^
2023-09-08T21:16:43,456   ./base/sbml/annotation/Date.cpp:487:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T21:16:43,457     487 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T21:16:43,457         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:43,457   ./base/sbml/annotation/Date.cpp:493:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T21:16:43,458     493 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T21:16:43,458         |                         ^
2023-09-08T21:16:43,459   ./base/sbml/annotation/Date.cpp:493:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T21:16:43,460     493 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T21:16:43,461         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:16:46,075   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T21:16:46,076   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:46,077     132 |   if (&orig == NULL)
2023-09-08T21:16:46,077         |             ^
2023-09-08T21:16:46,078   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2023-09-08T21:16:46,079     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2023-09-08T21:16:46,079         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:46,080   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T21:16:46,081   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:46,082     159 |   if (&rhs == NULL)
2023-09-08T21:16:46,082         |            ^
2023-09-08T21:16:46,083   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2023-09-08T21:16:46,084     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2023-09-08T21:16:46,084         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:46,087   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T21:16:46,088   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:16:46,088     233 |   if (&(name) == NULL)
2023-09-08T21:16:46,089         |               ^
2023-09-08T21:16:46,090   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2023-09-08T21:16:46,091     231 | ModelCreator::setFamilyName(const std::string& name)
2023-09-08T21:16:46,091         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:46,092   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T21:16:46,092   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:16:46,093     252 |   if (&(name) == NULL)
2023-09-08T21:16:46,093         |               ^
2023-09-08T21:16:46,094   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2023-09-08T21:16:46,094     250 | ModelCreator::setGivenName(const std::string& name)
2023-09-08T21:16:46,095         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:46,095   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T21:16:46,096   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2023-09-08T21:16:46,096     271 |   if (&(email) == NULL)
2023-09-08T21:16:46,097         |                ^
2023-09-08T21:16:46,097   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2023-09-08T21:16:46,098     269 | ModelCreator::setEmail(const std::string& email)
2023-09-08T21:16:46,098         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:16:46,099   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T21:16:46,099   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2023-09-08T21:16:46,100     287 |   if (&(organization) == NULL)
2023-09-08T21:16:46,100         |                       ^
2023-09-08T21:16:46,101   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2023-09-08T21:16:46,102     285 | ModelCreator::setOrganization(const std::string& organization)
2023-09-08T21:16:46,103         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T21:16:46,513   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T21:16:46,514   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,515     233 |   if (&(name) == NULL)
2023-09-08T21:16:46,515         |   ^~
2023-09-08T21:16:46,516   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T21:16:46,517   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,517     252 |   if (&(name) == NULL)
2023-09-08T21:16:46,518         |   ^~
2023-09-08T21:16:46,519   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T21:16:46,519   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,520     271 |   if (&(email) == NULL)
2023-09-08T21:16:46,521         |   ^~
2023-09-08T21:16:46,521   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T21:16:46,522   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,523     287 |   if (&(organization) == NULL)
2023-09-08T21:16:46,527         |   ^~
2023-09-08T21:16:46,528   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T21:16:46,530   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,532     132 |   if (&orig == NULL)
2023-09-08T21:16:46,533         |   ^~
2023-09-08T21:16:46,533   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T21:16:46,534   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:46,535     159 |   if (&rhs == NULL)
2023-09-08T21:16:46,535         |   ^~
2023-09-08T21:16:49,386   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T21:16:49,386   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:16:49,387      87 |   if (&orig == NULL)
2023-09-08T21:16:49,388         |             ^
2023-09-08T21:16:49,388   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2023-09-08T21:16:49,389      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2023-09-08T21:16:49,389         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:16:49,390   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T21:16:49,391   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:16:49,391     123 |   if (&rhs == NULL)
2023-09-08T21:16:49,392         |            ^
2023-09-08T21:16:49,393   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2023-09-08T21:16:49,393     121 | ModelHistory::operator=(const ModelHistory& rhs)
2023-09-08T21:16:49,394         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:16:49,805   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T21:16:49,806   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:49,807      87 |   if (&orig == NULL)
2023-09-08T21:16:49,808         |   ^~
2023-09-08T21:16:49,808   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T21:16:49,809   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:49,810     123 |   if (&rhs == NULL)
2023-09-08T21:16:49,811         |   ^~
2023-09-08T21:16:53,126   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:16:53,128                    from ./base//sbml/Model.h:446,
2023-09-08T21:16:53,130                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2023-09-08T21:16:53,131   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:16:53,133      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:16:53,135         |                           ^~~~~~~~~~~~~~
2023-09-08T21:16:53,137   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:16:53,139                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:16:53,141                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:16:53,144                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2023-09-08T21:16:53,146   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:16:53,149     117 |     struct unary_function
2023-09-08T21:16:53,151         |            ^~~~~~~~~~~~~~
2023-09-08T21:16:53,387   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T21:16:53,388   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:16:53,389      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T21:16:53,389         |                ^
2023-09-08T21:16:53,390   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2023-09-08T21:16:53,391      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T21:16:53,391         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:16:53,987   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:16:53,987      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T21:16:53,988         |                ^
2023-09-08T21:17:17,532   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T21:17:17,533   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:17:17,533     110 |   if (&orig == NULL)
2023-09-08T21:17:17,534         |             ^
2023-09-08T21:17:17,534   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2023-09-08T21:17:17,535     108 |   (const ConversionOption& orig)
2023-09-08T21:17:17,536         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:17:17,536   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T21:17:17,537   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:17:17,537     128 |   if (&rhs == NULL)
2023-09-08T21:17:17,538         |            ^
2023-09-08T21:17:17,539   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2023-09-08T21:17:17,539     126 | ConversionOption::operator=(const ConversionOption& rhs)
2023-09-08T21:17:17,540         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:17:18,003   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T21:17:18,004   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:18,005     110 |   if (&orig == NULL)
2023-09-08T21:17:18,007         |   ^~
2023-09-08T21:17:18,008   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T21:17:18,008   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:18,009     128 |   if (&rhs == NULL)
2023-09-08T21:17:18,010         |   ^~
2023-09-08T21:17:22,477   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T21:17:22,477   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:17:22,478      56 |   if (&orig == NULL)
2023-09-08T21:17:22,479         |             ^
2023-09-08T21:17:22,480   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2023-09-08T21:17:22,480      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2023-09-08T21:17:22,481         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:17:22,538   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T21:17:22,539   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:17:22,540      79 |   if (&rhs == NULL)
2023-09-08T21:17:22,540         |            ^
2023-09-08T21:17:22,541   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2023-09-08T21:17:22,541      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2023-09-08T21:17:22,542         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:17:22,553   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T21:17:22,554   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2023-09-08T21:17:22,554     231 |   if (&option == NULL) return;
2023-09-08T21:17:22,555         |               ^
2023-09-08T21:17:22,555   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2023-09-08T21:17:22,556     229 | ConversionProperties::addOption(const ConversionOption &option)
2023-09-08T21:17:22,557         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:17:23,149   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T21:17:23,152   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:23,155      56 |   if (&orig == NULL)
2023-09-08T21:17:23,158         |   ^~
2023-09-08T21:17:23,161   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T21:17:23,164   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:23,167      79 |   if (&rhs == NULL)
2023-09-08T21:17:23,171         |   ^~
2023-09-08T21:17:23,174   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T21:17:23,177   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:23,180     231 |   if (&option == NULL) return;
2023-09-08T21:17:23,182         |   ^~
2023-09-08T21:17:28,614   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:28,614                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:28,615                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:28,616                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:28,616                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:28,617                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T21:17:28,618                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2023-09-08T21:17:28,618   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:28,619      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:28,620         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:28,621   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:28,621                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:17:28,622                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:17:28,623                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T21:17:28,624   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:28,624     117 |     struct unary_function
2023-09-08T21:17:28,625         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:32,515   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:32,516                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:32,517                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:32,517                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:32,518                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:32,518                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2023-09-08T21:17:32,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:32,519      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:32,520         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:32,520   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:32,521                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T21:17:32,521   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:32,522     117 |     struct unary_function
2023-09-08T21:17:32,523         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:32,830   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T21:17:32,830   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:17:32,831      67 |   if (&orig == NULL)
2023-09-08T21:17:32,832         |             ^
2023-09-08T21:17:32,832   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2023-09-08T21:17:32,833      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2023-09-08T21:17:32,834         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:17:32,834   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T21:17:32,835   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:17:32,836     103 |   if (&rhs == NULL)
2023-09-08T21:17:32,837         |            ^
2023-09-08T21:17:32,838   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2023-09-08T21:17:32,838     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2023-09-08T21:17:32,839         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:17:33,314   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T21:17:33,315   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:33,315      67 |   if (&orig == NULL)
2023-09-08T21:17:33,316         |   ^~
2023-09-08T21:17:33,317   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T21:17:33,317   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:33,318     103 |   if (&rhs == NULL)
2023-09-08T21:17:33,319         |   ^~
2023-09-08T21:17:36,868   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:36,868                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:36,869                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:36,870                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:36,871                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:36,871                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2023-09-08T21:17:36,872                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2023-09-08T21:17:36,873   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:36,873      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:36,874         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:36,874   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T21:17:36,875                    from /usr/include/c++/12/vector:66,
2023-09-08T21:17:36,875                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2023-09-08T21:17:36,876   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:36,876     117 |     struct unary_function
2023-09-08T21:17:36,877         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:41,098   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:41,099                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:41,100                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:41,100                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:41,101                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:41,101                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T21:17:41,102                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2023-09-08T21:17:41,103   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:41,103      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:41,104         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:41,105   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:41,106                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:17:41,106                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:17:41,107                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T21:17:41,108   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:41,109     117 |     struct unary_function
2023-09-08T21:17:41,109         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:41,428   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:41,429   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:17:41,430     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T21:17:41,430         |              ^
2023-09-08T21:17:41,431   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2023-09-08T21:17:41,432     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:17:41,433         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:17:41,437   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2023-09-08T21:17:41,438   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2023-09-08T21:17:41,439     216 |           ->isSetMath(), &idsToSkip)
2023-09-08T21:17:41,439         |                          ^~~~~~~~~~
2023-09-08T21:17:41,440   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2023-09-08T21:17:41,441     153 |   IdList idsToSkip;
2023-09-08T21:17:41,442         |          ^~~~~~~~~
2023-09-08T21:17:41,933   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:41,934   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:41,934     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T21:17:41,935         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:17:45,721   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:45,722                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:45,722                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:45,723                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:45,723                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:45,724                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2023-09-08T21:17:45,724                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2023-09-08T21:17:45,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:45,726      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:45,726         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:45,727   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:45,727                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:17:45,728                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:17:45,729                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2023-09-08T21:17:45,730   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:45,730     117 |     struct unary_function
2023-09-08T21:17:45,731         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:46,048   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:46,049   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:17:46,050     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T21:17:46,051         |              ^
2023-09-08T21:17:46,052   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2023-09-08T21:17:46,052     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:17:46,054         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:17:46,709   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:46,709     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T21:17:46,710         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:17:51,199   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:51,200                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:51,201                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:51,201                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:51,202                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:51,203                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2023-09-08T21:17:51,204                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2023-09-08T21:17:51,204   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:51,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:51,206         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:51,207   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:51,207                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T21:17:51,208   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:51,208     117 |     struct unary_function
2023-09-08T21:17:51,209         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:51,522   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T21:17:51,522   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:17:51,523      91 |   if (&rhs == NULL)
2023-09-08T21:17:51,524         |            ^
2023-09-08T21:17:51,524   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2023-09-08T21:17:51,525      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2023-09-08T21:17:51,525         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:17:51,526   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:51,527   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:17:51,527     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T21:17:51,528         |              ^
2023-09-08T21:17:51,529   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2023-09-08T21:17:51,529     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:17:51,530         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:17:52,026   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T21:17:52,026   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:52,027      91 |   if (&rhs == NULL)
2023-09-08T21:17:52,028         |   ^~
2023-09-08T21:17:52,029   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:52,029   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:52,030     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T21:17:52,030         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:17:55,777   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:55,777                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:55,778                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:55,779                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:55,779                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:55,780                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2023-09-08T21:17:55,781                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2023-09-08T21:17:55,781   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:55,782      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:55,783         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:55,784   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:55,784                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:17:55,785                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:17:55,785                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2023-09-08T21:17:55,786   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:55,786     117 |     struct unary_function
2023-09-08T21:17:55,787         |            ^~~~~~~~~~~~~~
2023-09-08T21:17:56,101   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:17:56,101   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:17:56,101     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T21:17:56,102         |              ^
2023-09-08T21:17:56,103   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2023-09-08T21:17:56,103     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:17:56,104         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:17:56,574   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:17:56,575     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T21:17:56,576         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:17:59,873   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:17:59,874                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:17:59,874                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:17:59,875                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:17:59,876                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:17:59,876                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2023-09-08T21:17:59,877                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2023-09-08T21:17:59,878   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:17:59,878      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:17:59,879         |                           ^~~~~~~~~~~~~~
2023-09-08T21:17:59,880   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:17:59,880                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:17:59,881                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:17:59,881                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2023-09-08T21:17:59,882   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:17:59,883     117 |     struct unary_function
2023-09-08T21:17:59,883         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:00,275   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T21:18:00,276   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:18:00,276      89 |   if (&rhs == NULL)
2023-09-08T21:18:00,277         |            ^
2023-09-08T21:18:00,278   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2023-09-08T21:18:00,279      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2023-09-08T21:18:00,279         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:18:00,280   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:00,281   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:00,281     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T21:18:00,282         |              ^
2023-09-08T21:18:00,282   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2023-09-08T21:18:00,283     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:00,283         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:00,859   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T21:18:00,859   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:00,860      89 |   if (&rhs == NULL)
2023-09-08T21:18:00,861         |   ^~
2023-09-08T21:18:00,861   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:00,862   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:00,862     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T21:18:00,863         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:05,812   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:05,813                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:05,847                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:05,848                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:18:05,849                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:18:05,851                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2023-09-08T21:18:05,852                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2023-09-08T21:18:05,854   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:05,855      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:05,856         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:05,857   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:05,858                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:05,859                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:05,860                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2023-09-08T21:18:05,861   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:05,863     117 |     struct unary_function
2023-09-08T21:18:05,864         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:06,146   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:06,147   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:06,147     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T21:18:06,148         |              ^
2023-09-08T21:18:06,149   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2023-09-08T21:18:06,150     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:06,150         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:06,686   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:06,687     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T21:18:06,687         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:10,426   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:10,427                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:10,428                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:10,428                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:18:10,429                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:18:10,429                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2023-09-08T21:18:10,430                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2023-09-08T21:18:10,430   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:10,431      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:10,432         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:10,432   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:10,433                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:10,434                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:10,435                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2023-09-08T21:18:10,435   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:10,436     117 |     struct unary_function
2023-09-08T21:18:10,437         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:10,769   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:10,770   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:10,770     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T21:18:10,771         |              ^
2023-09-08T21:18:10,772   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2023-09-08T21:18:10,772     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:10,773         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:11,370   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:11,371     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T21:18:11,372         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:16,201   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:16,202                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:16,203                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:16,204                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:18:16,204                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:18:16,205                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2023-09-08T21:18:16,206                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2023-09-08T21:18:16,207   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:16,207      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:16,208         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:16,209   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:16,209                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:16,210                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:16,210                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2023-09-08T21:18:16,211   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:16,211     117 |     struct unary_function
2023-09-08T21:18:16,212         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:16,526   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:16,527   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:16,528     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T21:18:16,528         |              ^
2023-09-08T21:18:16,529   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2023-09-08T21:18:16,529     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:16,530         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:17,565   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:17,566     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T21:18:17,567         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:25,369   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:25,369                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:25,370                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:25,371                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:18:25,372                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:18:25,373                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2023-09-08T21:18:25,374                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2023-09-08T21:18:25,374   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:25,375      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:25,376         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:25,377   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:25,377                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:25,378                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:25,379                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2023-09-08T21:18:25,379   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:25,380     117 |     struct unary_function
2023-09-08T21:18:25,381         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:25,709   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T21:18:25,709   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:18:25,710      86 |   if (&rhs == NULL)
2023-09-08T21:18:25,711         |            ^
2023-09-08T21:18:25,712   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2023-09-08T21:18:25,713      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2023-09-08T21:18:25,713         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:18:25,714   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:25,714   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:25,715     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T21:18:25,716         |              ^
2023-09-08T21:18:25,716   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:129:74: note: ‘props’ declared here
2023-09-08T21:18:25,717     129 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:25,717         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:26,197   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T21:18:26,198   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:26,198      86 |   if (&rhs == NULL)
2023-09-08T21:18:26,199         |   ^~
2023-09-08T21:18:26,200   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:26,200   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:26,201     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T21:18:26,202         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:29,657   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:29,658                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:29,658                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:29,659                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:18:29,660                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:18:29,661                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2023-09-08T21:18:29,661                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2023-09-08T21:18:29,662   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:29,663      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:29,663         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:29,664   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:29,665                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:29,665                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:29,666                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2023-09-08T21:18:29,667   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:29,667     117 |     struct unary_function
2023-09-08T21:18:29,668         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:30,025   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T21:18:30,026   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:18:30,026      91 |   if (&rhs == NULL)
2023-09-08T21:18:30,028         |            ^
2023-09-08T21:18:30,028   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2023-09-08T21:18:30,029      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2023-09-08T21:18:30,029         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:18:30,030   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:30,031   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:18:30,031     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T21:18:30,032         |              ^
2023-09-08T21:18:30,032   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2023-09-08T21:18:30,033     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:18:30,033         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:18:30,831   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T21:18:30,832   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:30,832      91 |   if (&rhs == NULL)
2023-09-08T21:18:30,833         |   ^~
2023-09-08T21:18:30,833   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:18:30,834   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:30,835     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T21:18:30,836         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:18:37,979   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:37,980                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:37,980                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:37,981                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:18:37,982                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:18:37,983                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:18:37,983                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2023-09-08T21:18:37,984   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:37,985      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:37,985         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:37,986   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:37,987                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:37,987                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:37,988                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:44,
2023-09-08T21:18:37,989                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2023-09-08T21:18:37,989   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:37,990     117 |     struct unary_function
2023-09-08T21:18:37,991         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:41,907   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:41,908                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:41,908                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:41,909                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2023-09-08T21:18:41,910                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2023-09-08T21:18:41,911   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:41,911      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:41,912         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:41,912   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:41,913                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:18:41,913                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:18:41,914                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2023-09-08T21:18:41,914   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:41,915     117 |     struct unary_function
2023-09-08T21:18:41,916         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:42,238   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T21:18:42,239   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:18:42,240     119 |   if (&attributes == NULL) return;
2023-09-08T21:18:42,240         |                   ^
2023-09-08T21:18:42,241   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2023-09-08T21:18:42,242     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2023-09-08T21:18:42,242         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:18:42,243   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:18:42,244   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:18:42,244     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:42,245         |                   ^
2023-09-08T21:18:42,246   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2023-09-08T21:18:42,247     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T21:18:42,247         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:18:42,248   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T21:18:42,249     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:42,250         |                                                  ^
2023-09-08T21:18:42,251   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2023-09-08T21:18:42,251     133 |                                     const ExpectedAttributes& expectedAttributes)
2023-09-08T21:18:42,252         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:18:42,253   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2023-09-08T21:18:42,253   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:18:42,254     169 |   if (&stream == NULL) return;
2023-09-08T21:18:42,255         |               ^
2023-09-08T21:18:42,256   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2023-09-08T21:18:42,257     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2023-09-08T21:18:42,257         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:18:42,738   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:42,739     169 |   if (&stream == NULL) return;
2023-09-08T21:18:42,740         |   ^~
2023-09-08T21:18:42,743   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T21:18:42,743   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:42,744     119 |   if (&attributes == NULL) return;
2023-09-08T21:18:42,744         |   ^~
2023-09-08T21:18:42,745   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:18:42,746   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:42,746     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:42,747         |                   ^
2023-09-08T21:18:42,747   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:42,748     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:42,749         |                                                  ^
2023-09-08T21:18:46,489   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:46,490                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:46,491                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:46,492                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2023-09-08T21:18:46,492                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:59,
2023-09-08T21:18:46,493                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2023-09-08T21:18:46,494   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:46,495      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:46,495         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:46,496   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:46,496                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:18:46,497                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:18:46,498                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2023-09-08T21:18:46,499   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:46,499     117 |     struct unary_function
2023-09-08T21:18:46,500         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:46,822   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:18:46,823   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:18:46,824      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:46,824         |                   ^
2023-09-08T21:18:46,825   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2023-09-08T21:18:46,826      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2023-09-08T21:18:46,827         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:18:46,827   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T21:18:46,828      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:46,829         |                                                  ^
2023-09-08T21:18:46,829   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2023-09-08T21:18:46,830      89 |                                           const ExpectedAttributes& expectedAttributes)
2023-09-08T21:18:46,831         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:18:47,294   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:47,295      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:47,295         |                   ^
2023-09-08T21:18:47,296   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:47,297      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:18:47,297         |                                                  ^
2023-09-08T21:18:50,439   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:50,440                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:50,441                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:50,441                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:18:50,442                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:18:50,443                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2023-09-08T21:18:50,443   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:50,444      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:50,445         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:50,445   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:50,446                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:18:50,447                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:18:50,447                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:18:50,448   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:50,449     117 |     struct unary_function
2023-09-08T21:18:50,449         |            ^~~~~~~~~~~~~~
2023-09-08T21:18:50,813   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T21:18:50,814   ./base/sbml/extension/SBMLExtension.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T21:18:50,814     245 |   if (&extPoint == NULL) return NULL;
2023-09-08T21:18:50,815         |                 ^
2023-09-08T21:18:50,816   ./base/sbml/extension/SBMLExtension.cpp:243:65: note: ‘extPoint’ declared here
2023-09-08T21:18:50,816     243 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2023-09-08T21:18:50,817         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:18:50,818   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T21:18:50,819   ./base/sbml/extension/SBMLExtension.cpp:316:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:18:50,820     316 |   if(&uri == NULL) return false;
2023-09-08T21:18:50,821         |           ^
2023-09-08T21:18:50,822   ./base/sbml/extension/SBMLExtension.cpp:314:47: note: ‘uri’ declared here
2023-09-08T21:18:50,822     314 | SBMLExtension::isSupported(const std::string& uri) const
2023-09-08T21:18:50,823         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:18:51,434   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T21:18:51,434   ./base/sbml/extension/SBMLExtension.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:51,435     245 |   if (&extPoint == NULL) return NULL;
2023-09-08T21:18:51,436         |   ^~
2023-09-08T21:18:51,446   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T21:18:51,447   ./base/sbml/extension/SBMLExtension.cpp:316:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:18:51,448     316 |   if(&uri == NULL) return false;
2023-09-08T21:18:51,448         |   ^~
2023-09-08T21:18:57,728   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:18:57,729                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:18:57,729                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:18:57,730                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:18:57,730                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:18:57,731                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:18:57,731                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2023-09-08T21:18:57,732   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:18:57,732      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:18:57,733         |                           ^~~~~~~~~~~~~~
2023-09-08T21:18:57,734   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:18:57,734                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:18:57,735                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:18:57,736                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2023-09-08T21:18:57,736   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:18:57,737     117 |     struct unary_function
2023-09-08T21:18:57,738         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:02,933   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:03,205                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:19:03,422                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:19:03,429                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:19:03,549                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:19:03,577                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:19:03,916                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2023-09-08T21:19:03,949   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:03,953      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:03,977         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:04,350   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:04,555                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:19:04,565                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:19:04,566                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:19:04,568   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:04,569     117 |     struct unary_function
2023-09-08T21:19:04,572         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:04,786   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T21:19:04,787   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:19:04,788     103 |   if (&orig != NULL)
2023-09-08T21:19:04,789         |             ^
2023-09-08T21:19:04,790   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2023-09-08T21:19:04,791     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2023-09-08T21:19:04,792         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:04,793   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T21:19:04,794   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:19:04,797     221 |   if(&uri == NULL) return NULL;
2023-09-08T21:19:04,798         |           ^
2023-09-08T21:19:04,799   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2023-09-08T21:19:04,800     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2023-09-08T21:19:04,801         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:04,803   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T21:19:04,804   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T21:19:04,805     245 |   if (&extPoint != NULL)
2023-09-08T21:19:04,806         |                 ^
2023-09-08T21:19:04,808   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2023-09-08T21:19:04,809     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2023-09-08T21:19:04,810         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:04,811   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T21:19:04,812   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:19:04,814     272 |   if (&uri != NULL)
2023-09-08T21:19:04,815         |            ^
2023-09-08T21:19:04,816   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2023-09-08T21:19:04,818     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2023-09-08T21:19:04,819         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:04,820   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T21:19:04,821   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T21:19:04,822     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T21:19:04,823         |                ^
2023-09-08T21:19:04,824   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2023-09-08T21:19:04,826     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T21:19:04,827         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:04,829   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:19:04,830     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T21:19:04,831         |                                ^
2023-09-08T21:19:04,832   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2023-09-08T21:19:04,833     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T21:19:04,834         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:04,835   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T21:19:04,836   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T21:19:04,837     347 |   if (&extPoint == NULL) return 0;
2023-09-08T21:19:04,838         |                 ^
2023-09-08T21:19:04,840   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2023-09-08T21:19:04,841     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2023-09-08T21:19:04,842         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:04,843   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2023-09-08T21:19:04,844   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2023-09-08T21:19:04,845     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2023-09-08T21:19:04,846         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T21:19:05,365   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T21:19:05,372   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,374     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T21:19:05,375         |                ^
2023-09-08T21:19:05,376   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,377     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T21:19:05,379         |                                ^
2023-09-08T21:19:05,380   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T21:19:05,381   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,382     347 |   if (&extPoint == NULL) return 0;
2023-09-08T21:19:05,484         |   ^~
2023-09-08T21:19:05,504   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T21:19:05,505   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,512     245 |   if (&extPoint != NULL)
2023-09-08T21:19:05,518         |   ^~
2023-09-08T21:19:05,519   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T21:19:05,526   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,529     272 |   if (&uri != NULL)
2023-09-08T21:19:05,532         |   ^~
2023-09-08T21:19:05,536   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T21:19:05,550   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,556     221 |   if(&uri == NULL) return NULL;
2023-09-08T21:19:05,612         |   ^~
2023-09-08T21:19:05,717   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T21:19:05,723   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:05,737     103 |   if (&orig != NULL)
2023-09-08T21:19:05,737         |   ^~
2023-09-08T21:19:10,028   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T21:19:10,029   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T21:19:10,029      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,030         |            ^
2023-09-08T21:19:10,031   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2023-09-08T21:19:10,031      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T21:19:10,032         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:10,033   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:19:10,034      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,034         |                            ^
2023-09-08T21:19:10,035   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2023-09-08T21:19:10,036      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T21:19:10,037         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:10,037   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T21:19:10,038   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T21:19:10,039     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,040         |            ^
2023-09-08T21:19:10,041   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2023-09-08T21:19:10,041     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T21:19:10,042         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:10,043   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:19:10,043     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,044         |                            ^
2023-09-08T21:19:10,045   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2023-09-08T21:19:10,046     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T21:19:10,046         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:10,358   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T21:19:10,359   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:10,360      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,360         |            ^
2023-09-08T21:19:10,361   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:10,361      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,362         |                            ^
2023-09-08T21:19:10,362   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T21:19:10,363   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:10,363     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,364         |            ^
2023-09-08T21:19:10,364   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:10,365     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T21:19:10,365         |                            ^
2023-09-08T21:19:13,570   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:13,571                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:19:13,572                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:19:13,572                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:19:13,573                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2023-09-08T21:19:13,574   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:13,575      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:13,575         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:13,576   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:13,576                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:19:13,577                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:19:13,578                    from ./base//sbml/extension/SBasePlugin.h:66:
2023-09-08T21:19:13,578   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:13,579     117 |     struct unary_function
2023-09-08T21:19:13,580         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:13,956   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:19:13,957   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:19:13,957     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:19:13,958         |                   ^
2023-09-08T21:19:13,959   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2023-09-08T21:19:13,959     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T21:19:13,960         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:19:13,961   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T21:19:13,961     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:19:13,962         |                                                  ^
2023-09-08T21:19:13,963   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2023-09-08T21:19:13,964     576 |                              const ExpectedAttributes& expectedAttributes)
2023-09-08T21:19:13,965         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:19:13,965   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T21:19:13,966   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:13,966     683 |   if(&element == NULL) return;
2023-09-08T21:19:13,967         |               ^
2023-09-08T21:19:13,967   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2023-09-08T21:19:13,968     678 | SBasePlugin::logUnknownElement(const std::string &element,
2023-09-08T21:19:13,969         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:13,971   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T21:19:13,972   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:19:13,973     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:13,973         |                  ^
2023-09-08T21:19:13,974   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2023-09-08T21:19:13,974     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2023-09-08T21:19:13,975         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:19:13,976   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:13,977     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:13,978         |                                      ^
2023-09-08T21:19:13,978   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2023-09-08T21:19:13,979     714 |                                  const std::string& element)
2023-09-08T21:19:13,980         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:13,983   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T21:19:13,983   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:19:13,984     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:13,985         |                  ^
2023-09-08T21:19:13,985   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2023-09-08T21:19:13,986     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2023-09-08T21:19:13,987         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:19:13,987   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:13,988     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:13,989         |                                      ^
2023-09-08T21:19:13,989   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2023-09-08T21:19:13,990     748 |                                     const std::string& element)
2023-09-08T21:19:13,991         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:14,533   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:19:14,534   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,535     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:19:14,536         |                   ^
2023-09-08T21:19:14,536   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,537     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:19:14,537         |                                                  ^
2023-09-08T21:19:14,538   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T21:19:14,538   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,539     683 |   if(&element == NULL) return;
2023-09-08T21:19:14,539         |   ^~
2023-09-08T21:19:14,540   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T21:19:14,541   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,541     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:14,542         |                  ^
2023-09-08T21:19:14,542   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,543     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:14,544         |                                      ^
2023-09-08T21:19:14,544   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T21:19:14,545   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,546     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:14,546         |                  ^
2023-09-08T21:19:14,547   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:14,547     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:19:14,548         |                                      ^
2023-09-08T21:19:19,223   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:19,224                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:19:19,225                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:19:19,226                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:19:19,226                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2023-09-08T21:19:19,227   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:19,228      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:19,229         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:19,229   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:19,230                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:19:19,231                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:19:19,232                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:19:19,232   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:19,233     117 |     struct unary_function
2023-09-08T21:19:19,234         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:19,539   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2023-09-08T21:19:19,539   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:19:19,540     147 |   if (&uri == NULL) return false;
2023-09-08T21:19:19,541         |            ^
2023-09-08T21:19:19,541   ./base/sbml/extension/SBasePluginCreatorBase.cpp:145:56: note: ‘uri’ declared here
2023-09-08T21:19:19,542     145 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2023-09-08T21:19:19,542         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:19:20,028   ./base/sbml/extension/SBasePluginCreatorBase.cpp:147:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:20,029     147 |   if (&uri == NULL) return false;
2023-09-08T21:19:20,029         |   ^~
2023-09-08T21:19:24,327   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:24,327                    from ./base//sbml/Model.h:446,
2023-09-08T21:19:24,328                    from ./base/sbml/math/ASTNode.cpp:44:
2023-09-08T21:19:24,329   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:24,329      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:24,330         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:24,330   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:24,331                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:19:24,332                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T21:19:24,332                    from ./base/sbml/math/ASTNode.cpp:41:
2023-09-08T21:19:24,333   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:24,334     117 |     struct unary_function
2023-09-08T21:19:24,334         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:33,802   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:33,803                    from ./base//sbml/Model.h:446,
2023-09-08T21:19:33,803                    from L3Parser.ypp:83:
2023-09-08T21:19:33,804   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:33,805      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:33,805         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:33,806   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:33,807                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:19:33,808                    from ./base//sbml/math/ASTNode.h:164,
2023-09-08T21:19:33,808                    from ./base//sbml/math/L3Parser.h:37,
2023-09-08T21:19:33,809                    from L3Parser.ypp:82:
2023-09-08T21:19:33,810   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:33,811     117 |     struct unary_function
2023-09-08T21:19:33,811         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:43,337   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:43,338                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:19:43,338                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:19:43,339                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:19:43,339                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:19:43,340                    from ./base//sbml/extension/SBMLExtensionRegistry.h:50,
2023-09-08T21:19:43,341                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2023-09-08T21:19:43,341   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:43,342      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:43,343         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:43,343   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T21:19:43,343                    from /usr/include/c++/12/vector:66,
2023-09-08T21:19:43,344                    from ./base//sbml/math/L3ParserSettings.h:316,
2023-09-08T21:19:43,345                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2023-09-08T21:19:43,345   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:43,346     117 |     struct unary_function
2023-09-08T21:19:43,346         |            ^~~~~~~~~~~~~~
2023-09-08T21:19:46,821   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T21:19:46,822   ./base/sbml/math/MathML.cpp:275:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:46,822     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,823         |                ^
2023-09-08T21:19:46,823   ./base/sbml/math/MathML.cpp:272:51: note: ‘element’ declared here
2023-09-08T21:19:46,824     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T21:19:46,824         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:46,825   ./base/sbml/math/MathML.cpp:275:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,825     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,826         |                                   ^
2023-09-08T21:19:46,826   ./base/sbml/math/MathML.cpp:272:27: note: ‘stream’ declared here
2023-09-08T21:19:46,827     272 | logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T21:19:46,828         |           ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,829   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T21:19:46,829   ./base/sbml/math/MathML.cpp:310:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T21:19:46,830     310 |   if (&s == NULL) return s;
2023-09-08T21:19:46,831         |          ^
2023-09-08T21:19:46,831   ./base/sbml/math/MathML.cpp:308:21: note: ‘s’ declared here
2023-09-08T21:19:46,832     308 | trim (const string& s)
2023-09-08T21:19:46,833         |       ~~~~~~~~~~~~~~^
2023-09-08T21:19:46,837   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2023-09-08T21:19:46,838   ./base/sbml/math/MathML.cpp:337:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,839     337 |   if (&node == NULL) return;
2023-09-08T21:19:46,839         |             ^
2023-09-08T21:19:46,840   ./base/sbml/math/MathML.cpp:335:29: note: ‘node’ declared here
2023-09-08T21:19:46,840     335 | checkFunctionArgs (ASTNode& node)
2023-09-08T21:19:46,841         |                    ~~~~~~~~~^~~~
2023-09-08T21:19:46,843   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2023-09-08T21:19:46,844   ./base/sbml/math/MathML.cpp:369:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,844     369 |   if (&node == NULL) return;
2023-09-08T21:19:46,845         |             ^
2023-09-08T21:19:46,846   ./base/sbml/math/MathML.cpp:367:24: note: ‘node’ declared here
2023-09-08T21:19:46,847     367 | reduceBinary (ASTNode& node)
2023-09-08T21:19:46,847         |               ~~~~~~~~~^~~~
2023-09-08T21:19:46,848   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:46,849   ./base/sbml/math/MathML.cpp:388:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,849     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,850         |             ^
2023-09-08T21:19:46,850   ./base/sbml/math/MathML.cpp:386:21: note: ‘node’ declared here
2023-09-08T21:19:46,851     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,851         |            ~~~~~~~~~^~~~
2023-09-08T21:19:46,852   ./base/sbml/math/MathML.cpp:388:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:46,852     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,853         |                                 ^
2023-09-08T21:19:46,853   ./base/sbml/math/MathML.cpp:386:43: note: ‘element’ declared here
2023-09-08T21:19:46,854     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,854         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:46,854   ./base/sbml/math/MathML.cpp:388:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,855     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,855         |                                                    ^
2023-09-08T21:19:46,856   ./base/sbml/math/MathML.cpp:386:68: note: ‘stream’ declared here
2023-09-08T21:19:46,856     386 | setTypeCI (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,857         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,863   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:46,863   ./base/sbml/math/MathML.cpp:436:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,864     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,864         |             ^
2023-09-08T21:19:46,865   ./base/sbml/math/MathML.cpp:434:21: note: ‘node’ declared here
2023-09-08T21:19:46,866     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,867         |            ~~~~~~~~~^~~~
2023-09-08T21:19:46,867   ./base/sbml/math/MathML.cpp:436:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:46,868     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,869         |                                 ^
2023-09-08T21:19:46,869   ./base/sbml/math/MathML.cpp:434:43: note: ‘element’ declared here
2023-09-08T21:19:46,870     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,870         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:46,871   ./base/sbml/math/MathML.cpp:436:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,872     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,872         |                                                    ^
2023-09-08T21:19:46,873   ./base/sbml/math/MathML.cpp:434:68: note: ‘stream’ declared here
2023-09-08T21:19:46,874     434 | setTypeCN (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,874         |                                                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,885   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:46,886   ./base/sbml/math/MathML.cpp:565:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,886     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,887         |             ^
2023-09-08T21:19:46,888   ./base/sbml/math/MathML.cpp:563:24: note: ‘node’ declared here
2023-09-08T21:19:46,888     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,889         |               ~~~~~~~~~^~~~
2023-09-08T21:19:46,889   ./base/sbml/math/MathML.cpp:565:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:46,890     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,890         |                                 ^
2023-09-08T21:19:46,891   ./base/sbml/math/MathML.cpp:563:46: note: ‘element’ declared here
2023-09-08T21:19:46,891     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,892         |                              ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:46,893   ./base/sbml/math/MathML.cpp:565:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,893     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,894         |                                                    ^
2023-09-08T21:19:46,894   ./base/sbml/math/MathML.cpp:563:71: note: ‘stream’ declared here
2023-09-08T21:19:46,895     563 | setTypeOther (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,895         |                                                       ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,896   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:46,896   ./base/sbml/math/MathML.cpp:585:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,897     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,898         |             ^
2023-09-08T21:19:46,899   ./base/sbml/math/MathML.cpp:583:19: note: ‘node’ declared here
2023-09-08T21:19:46,900     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,901         |          ~~~~~~~~~^~~~
2023-09-08T21:19:46,902   ./base/sbml/math/MathML.cpp:585:33: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:19:46,903     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,903         |                                 ^
2023-09-08T21:19:46,904   ./base/sbml/math/MathML.cpp:583:41: note: ‘element’ declared here
2023-09-08T21:19:46,905     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,905         |                         ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:19:46,906   ./base/sbml/math/MathML.cpp:585:52: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,907     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:46,907         |                                                    ^
2023-09-08T21:19:46,908   ./base/sbml/math/MathML.cpp:583:66: note: ‘stream’ declared here
2023-09-08T21:19:46,909     583 | setType (ASTNode& node, const XMLToken& element, XMLInputStream& stream)
2023-09-08T21:19:46,909         |                                                  ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,910   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2023-09-08T21:19:46,911   ./base/sbml/math/MathML.cpp:621:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:19:46,911     621 |   if (&name == NULL) return false;
2023-09-08T21:19:46,912         |             ^
2023-09-08T21:19:46,913   ./base/sbml/math/MathML.cpp:619:31: note: ‘name’ declared here
2023-09-08T21:19:46,914     619 | isMathMLNodeTag(const string& name)
2023-09-08T21:19:46,914         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:46,915   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2023-09-08T21:19:46,915   ./base/sbml/math/MathML.cpp:650:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,916     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,917         |             ^
2023-09-08T21:19:46,917   ./base/sbml/math/MathML.cpp:647:22: note: ‘node’ declared here
2023-09-08T21:19:46,918     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2023-09-08T21:19:46,918         |             ~~~~~~~~~^~~~
2023-09-08T21:19:46,919   ./base/sbml/math/MathML.cpp:650:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,919     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,920         |                                ^
2023-09-08T21:19:46,920   ./base/sbml/math/MathML.cpp:647:44: note: ‘stream’ declared here
2023-09-08T21:19:46,921     647 | readMathML (ASTNode& node, XMLInputStream& stream, std::string reqd_prefix,
2023-09-08T21:19:46,922         |                            ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,946   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:46,947   ./base/sbml/math/MathML.cpp:1021:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,948    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,948         |             ^
2023-09-08T21:19:46,949   ./base/sbml/math/MathML.cpp:1019:25: note: ‘node’ declared here
2023-09-08T21:19:46,950    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:46,951         |          ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:46,952   ./base/sbml/math/MathML.cpp:1021:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,952    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,953         |                                ^
2023-09-08T21:19:46,954   ./base/sbml/math/MathML.cpp:1019:48: note: ‘stream’ declared here
2023-09-08T21:19:46,955    1019 | writeCI (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:46,956         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,956   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:46,957   ./base/sbml/math/MathML.cpp:1060:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,958    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,958         |             ^
2023-09-08T21:19:46,959   ./base/sbml/math/MathML.cpp:1058:25: note: ‘node’ declared here
2023-09-08T21:19:46,960    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2023-09-08T21:19:46,960         |          ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:46,961   ./base/sbml/math/MathML.cpp:1060:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,962    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,962         |                                ^
2023-09-08T21:19:46,963   ./base/sbml/math/MathML.cpp:1058:48: note: ‘stream’ declared here
2023-09-08T21:19:46,964    1058 | writeCN (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns=NULL)
2023-09-08T21:19:46,965         |                               ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,970   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2023-09-08T21:19:46,971   ./base/sbml/math/MathML.cpp:1136:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,972    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,972         |             ^
2023-09-08T21:19:46,973   ./base/sbml/math/MathML.cpp:1134:31: note: ‘node’ declared here
2023-09-08T21:19:46,973    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2023-09-08T21:19:46,974         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:46,974   ./base/sbml/math/MathML.cpp:1136:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,975    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,975         |                                ^
2023-09-08T21:19:46,976   ./base/sbml/math/MathML.cpp:1134:54: note: ‘stream’ declared here
2023-09-08T21:19:46,976    1134 | writeConstant (const ASTNode& node, XMLOutputStream& stream)
2023-09-08T21:19:46,977         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,977   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:46,978   ./base/sbml/math/MathML.cpp:1162:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:46,978    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,979         |             ^
2023-09-08T21:19:46,980   ./base/sbml/math/MathML.cpp:1160:30: note: ‘node’ declared here
2023-09-08T21:19:46,981    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:46,981         |               ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:46,982   ./base/sbml/math/MathML.cpp:1162:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,983    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:46,983         |                                ^
2023-09-08T21:19:46,984   ./base/sbml/math/MathML.cpp:1160:53: note: ‘stream’ declared here
2023-09-08T21:19:46,985    1160 | writeCSymbol (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:46,986         |                                    ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,987   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2023-09-08T21:19:46,987   ./base/sbml/math/MathML.cpp:1194:14: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:19:46,988    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T21:19:46,989         |              ^
2023-09-08T21:19:46,989   ./base/sbml/math/MathML.cpp:1192:28: note: ‘value’ declared here
2023-09-08T21:19:46,990    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2023-09-08T21:19:46,991         |              ~~~~~~~~~~~~~~^~~~~
2023-09-08T21:19:46,991   ./base/sbml/math/MathML.cpp:1194:33: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:46,992    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T21:19:46,992         |                                 ^
2023-09-08T21:19:46,993   ./base/sbml/math/MathML.cpp:1192:52: note: ‘stream’ declared here
2023-09-08T21:19:46,994    1192 | writeDouble (const double& value, XMLOutputStream& stream)
2023-09-08T21:19:46,995         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:46,995   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2023-09-08T21:19:46,996   ./base/sbml/math/MathML.cpp:1232:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T21:19:46,997    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T21:19:46,998         |                 ^
2023-09-08T21:19:46,998   ./base/sbml/math/MathML.cpp:1228:36: note: ‘mantissa’ declared here
2023-09-08T21:19:46,999    1228 | writeENotation (  const double&    mantissa
2023-09-08T21:19:46,999         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:47,000   ./base/sbml/math/MathML.cpp:1232:36: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,001    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T21:19:47,001         |                                    ^
2023-09-08T21:19:47,002   ./base/sbml/math/MathML.cpp:1230:36: note: ‘stream’ declared here
2023-09-08T21:19:47,002    1230 |                 , XMLOutputStream& stream )
2023-09-08T21:19:47,003         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,003   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2023-09-08T21:19:47,004   ./base/sbml/math/MathML.cpp:1267:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T21:19:47,004    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,005         |                 ^
2023-09-08T21:19:47,006   ./base/sbml/math/MathML.cpp:1263:36: note: ‘mantissa’ declared here
2023-09-08T21:19:47,006    1263 | writeENotation (  const string&    mantissa
2023-09-08T21:19:47,007         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:47,007   ./base/sbml/math/MathML.cpp:1267:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2023-09-08T21:19:47,008    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,009         |                                      ^
2023-09-08T21:19:47,010   ./base/sbml/math/MathML.cpp:1264:36: note: ‘exponent’ declared here
2023-09-08T21:19:47,010    1264 |                 , const string&    exponent
2023-09-08T21:19:47,011         |                   ~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:19:47,012   ./base/sbml/math/MathML.cpp:1267:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,013    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,013         |                                                         ^
2023-09-08T21:19:47,014   ./base/sbml/math/MathML.cpp:1265:36: note: ‘stream’ declared here
2023-09-08T21:19:47,015    1265 |                 , XMLOutputStream& stream )
2023-09-08T21:19:47,016         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,016   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,017   ./base/sbml/math/MathML.cpp:1286:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,018    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,018         |             ^
2023-09-08T21:19:47,019   ./base/sbml/math/MathML.cpp:1284:34: note: ‘node’ declared here
2023-09-08T21:19:47,020    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,020         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,021   ./base/sbml/math/MathML.cpp:1286:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,022    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,023         |                                ^
2023-09-08T21:19:47,023   ./base/sbml/math/MathML.cpp:1284:57: note: ‘stream’ declared here
2023-09-08T21:19:47,024    1284 | writeFunctionLog (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,025         |                                        ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,026   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,026   ./base/sbml/math/MathML.cpp:1309:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,027    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,027         |             ^
2023-09-08T21:19:47,028   ./base/sbml/math/MathML.cpp:1307:35: note: ‘node’ declared here
2023-09-08T21:19:47,028    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,029         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,029   ./base/sbml/math/MathML.cpp:1309:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,030    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,030         |                                ^
2023-09-08T21:19:47,031   ./base/sbml/math/MathML.cpp:1307:58: note: ‘stream’ declared here
2023-09-08T21:19:47,031    1307 | writeFunctionRoot (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,032         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,032   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,033   ./base/sbml/math/MathML.cpp:1336:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,034    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,034         |             ^
2023-09-08T21:19:47,035   ./base/sbml/math/MathML.cpp:1334:31: note: ‘node’ declared here
2023-09-08T21:19:47,035    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,036         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,037   ./base/sbml/math/MathML.cpp:1336:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,037    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,038         |                                ^
2023-09-08T21:19:47,039   ./base/sbml/math/MathML.cpp:1334:54: note: ‘stream’ declared here
2023-09-08T21:19:47,040    1334 | writeFunction (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,040         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,041   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,042   ./base/sbml/math/MathML.cpp:1395:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,042    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,043         |             ^
2023-09-08T21:19:47,044   ./base/sbml/math/MathML.cpp:1393:29: note: ‘node’ declared here
2023-09-08T21:19:47,044    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,045         |              ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,046   ./base/sbml/math/MathML.cpp:1395:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,046    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,047         |                                ^
2023-09-08T21:19:47,048   ./base/sbml/math/MathML.cpp:1393:52: note: ‘stream’ declared here
2023-09-08T21:19:47,049    1393 | writeLambda (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,049         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,050   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,051   ./base/sbml/math/MathML.cpp:1435:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,051    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,052         |             ^
2023-09-08T21:19:47,053   ./base/sbml/math/MathML.cpp:1433:35: note: ‘node’ declared here
2023-09-08T21:19:47,053    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,054         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,054   ./base/sbml/math/MathML.cpp:1435:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,055    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,055         |                                ^
2023-09-08T21:19:47,056   ./base/sbml/math/MathML.cpp:1433:58: note: ‘stream’ declared here
2023-09-08T21:19:47,056    1433 | writeOperatorArgs (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,057         |                                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,058   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,058   ./base/sbml/math/MathML.cpp:1500:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,059    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,059         |             ^
2023-09-08T21:19:47,060   ./base/sbml/math/MathML.cpp:1498:31: note: ‘node’ declared here
2023-09-08T21:19:47,061    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,061         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,062   ./base/sbml/math/MathML.cpp:1500:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,063    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,064         |                                ^
2023-09-08T21:19:47,064   ./base/sbml/math/MathML.cpp:1498:54: note: ‘stream’ declared here
2023-09-08T21:19:47,065    1498 | writeOperator (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,066         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,066   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,067   ./base/sbml/math/MathML.cpp:1533:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,068    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,068         |             ^
2023-09-08T21:19:47,069   ./base/sbml/math/MathML.cpp:1531:32: note: ‘node’ declared here
2023-09-08T21:19:47,070    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,070         |                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,071   ./base/sbml/math/MathML.cpp:1533:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,072    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,072         |                                ^
2023-09-08T21:19:47,073   ./base/sbml/math/MathML.cpp:1531:55: note: ‘stream’ declared here
2023-09-08T21:19:47,074    1531 | writePiecewise (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,074         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,075   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2023-09-08T21:19:47,076   ./base/sbml/math/MathML.cpp:1576:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,077    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,077         |             ^
2023-09-08T21:19:47,078   ./base/sbml/math/MathML.cpp:1574:31: note: ‘node’ declared here
2023-09-08T21:19:47,078    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,079         |                ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,079   ./base/sbml/math/MathML.cpp:1576:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,080    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,081         |                                ^
2023-09-08T21:19:47,081   ./base/sbml/math/MathML.cpp:1574:54: note: ‘stream’ declared here
2023-09-08T21:19:47,082    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,082         |                                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,083   ./base/sbml/math/MathML.cpp:1576:56: warning: the compiler can assume that the address of ‘inSemantics’ will never be NULL [-Waddress]
2023-09-08T21:19:47,083    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,084         |                                                        ^
2023-09-08T21:19:47,085   ./base/sbml/math/MathML.cpp:1574:68: note: ‘inSemantics’ declared here
2023-09-08T21:19:47,086    1574 | writeSemantics(const ASTNode& node, XMLOutputStream& stream, bool &inSemantics, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,086         |                                                              ~~~~~~^~~~~~~~~~~
2023-09-08T21:19:47,087   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,088   ./base/sbml/math/MathML.cpp:1603:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:19:47,089    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,090         |             ^
2023-09-08T21:19:47,090   ./base/sbml/math/MathML.cpp:1601:27: note: ‘node’ declared here
2023-09-08T21:19:47,091    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,092         |            ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:19:47,093   ./base/sbml/math/MathML.cpp:1603:32: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,093    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,094         |                                ^
2023-09-08T21:19:47,095   ./base/sbml/math/MathML.cpp:1601:50: note: ‘stream’ declared here
2023-09-08T21:19:47,095    1601 | writeNode (const ASTNode& node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,096         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,097   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2023-09-08T21:19:47,097   ./base/sbml/math/MathML.cpp:1629:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,098    1629 |   if (&stream == NULL) return NULL;
2023-09-08T21:19:47,099         |               ^
2023-09-08T21:19:47,100   ./base/sbml/math/MathML.cpp:1627:29: note: ‘stream’ declared here
2023-09-08T21:19:47,100    1627 | readMathML (XMLInputStream& stream, std::string reqd_prefix, bool inRead)
2023-09-08T21:19:47,101         |             ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,102   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,103   ./base/sbml/math/MathML.cpp:1723:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:19:47,103    1723 |   if (node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,104         |                               ^
2023-09-08T21:19:47,104   ./base/sbml/math/MathML.cpp:1721:52: note: ‘stream’ declared here
2023-09-08T21:19:47,105    1721 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T21:19:47,105         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:19:47,569   ./base/sbml/math/MathML.cpp: In function ‘void logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T21:19:47,569   ./base/sbml/math/MathML.cpp:275:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,570     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,570         |                                   ^
2023-09-08T21:19:47,571   ./base/sbml/math/MathML.cpp:275:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,572     275 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,572         |                ^
2023-09-08T21:19:47,573   ./base/sbml/math/MathML.cpp: In function ‘void setTypeOther(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:47,573   ./base/sbml/math/MathML.cpp:565:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,574     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,575         |             ^
2023-09-08T21:19:47,575   ./base/sbml/math/MathML.cpp:565:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,576     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,577         |                                 ^
2023-09-08T21:19:47,578   ./base/sbml/math/MathML.cpp:565:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,578     565 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,579         |                                         ^
2023-09-08T21:19:47,580   ./base/sbml/math/MathML.cpp: In function ‘void reduceBinary(ASTNode&)’:
2023-09-08T21:19:47,581   ./base/sbml/math/MathML.cpp:369:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,581     369 |   if (&node == NULL) return;
2023-09-08T21:19:47,582         |   ^~
2023-09-08T21:19:47,583   ./base/sbml/math/MathML.cpp: In function ‘void checkFunctionArgs(ASTNode&)’:
2023-09-08T21:19:47,583   ./base/sbml/math/MathML.cpp:337:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,584     337 |   if (&node == NULL) return;
2023-09-08T21:19:47,585         |   ^~
2023-09-08T21:19:47,585   ./base/sbml/math/MathML.cpp: In function ‘bool isMathMLNodeTag(const std::string&)’:
2023-09-08T21:19:47,586   ./base/sbml/math/MathML.cpp:621:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,587     621 |   if (&name == NULL) return false;
2023-09-08T21:19:47,587         |   ^~
2023-09-08T21:19:47,588   ./base/sbml/math/MathML.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T21:19:47,589   ./base/sbml/math/MathML.cpp:310:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,590     310 |   if (&s == NULL) return s;
2023-09-08T21:19:47,590         |   ^~
2023-09-08T21:19:47,591   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const std::string&, const std::string&, XMLOutputStream&)’:
2023-09-08T21:19:47,592   ./base/sbml/math/MathML.cpp:1267:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,593    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,593         |                 ^
2023-09-08T21:19:47,594   ./base/sbml/math/MathML.cpp:1267:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,594    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,595         |                                      ^
2023-09-08T21:19:47,595   ./base/sbml/math/MathML.cpp:1267:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,596    1267 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T21:19:47,596         |                                              ^
2023-09-08T21:19:47,597   ./base/sbml/math/MathML.cpp: In function ‘void writeCSymbol(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,597   ./base/sbml/math/MathML.cpp:1162:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,598    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,599         |             ^
2023-09-08T21:19:47,599   ./base/sbml/math/MathML.cpp:1162:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,600    1162 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,601         |                                ^
2023-09-08T21:19:47,601   ./base/sbml/math/MathML.cpp: In function ‘void writeCI(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,602   ./base/sbml/math/MathML.cpp:1021:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,603    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,604         |             ^
2023-09-08T21:19:47,604   ./base/sbml/math/MathML.cpp:1021:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,605    1021 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,606         |                                ^
2023-09-08T21:19:47,607   ./base/sbml/math/MathML.cpp: In function ‘void writeConstant(const ASTNode&, XMLOutputStream&)’:
2023-09-08T21:19:47,607   ./base/sbml/math/MathML.cpp:1136:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,608    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,609         |             ^
2023-09-08T21:19:47,609   ./base/sbml/math/MathML.cpp:1136:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,610    1136 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,611         |                                ^
2023-09-08T21:19:47,611   ./base/sbml/math/MathML.cpp: In function ‘void writeENotation(const double&, long int, XMLOutputStream&)’:
2023-09-08T21:19:47,612   ./base/sbml/math/MathML.cpp:1232:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,613    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T21:19:47,614         |                 ^
2023-09-08T21:19:47,614   ./base/sbml/math/MathML.cpp:1232:36: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,615    1232 |   if (&mantissa == NULL || &stream == NULL) return;
2023-09-08T21:19:47,616         |                                    ^
2023-09-08T21:19:47,617   ./base/sbml/math/MathML.cpp: In function ‘void writeDouble(const double&, XMLOutputStream&)’:
2023-09-08T21:19:47,617   ./base/sbml/math/MathML.cpp:1194:14: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,618    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T21:19:47,619         |              ^
2023-09-08T21:19:47,620   ./base/sbml/math/MathML.cpp:1194:33: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,620    1194 |   if (&value == NULL || &stream == NULL) return;
2023-09-08T21:19:47,621         |                                 ^
2023-09-08T21:19:47,621   ./base/sbml/math/MathML.cpp: In function ‘void writeCN(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,622   ./base/sbml/math/MathML.cpp:1060:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,622    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,623         |             ^
2023-09-08T21:19:47,624   ./base/sbml/math/MathML.cpp:1060:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,624    1060 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,625         |                                ^
2023-09-08T21:19:47,625   ./base/sbml/math/MathML.cpp: In function ‘void writeNode(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,626   ./base/sbml/math/MathML.cpp:1603:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,627    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,627         |             ^
2023-09-08T21:19:47,628   ./base/sbml/math/MathML.cpp:1603:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,628    1603 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,629         |                                ^
2023-09-08T21:19:47,630   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,631   ./base/sbml/math/MathML.cpp:1723:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,631    1723 |   if (node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,632         |                               ^
2023-09-08T21:19:47,633   ./base/sbml/math/MathML.cpp: In function ‘void writeSemantics(const ASTNode&, XMLOutputStream&, bool&, SBMLNamespaces*)’:
2023-09-08T21:19:47,633   ./base/sbml/math/MathML.cpp:1576:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,634    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,635         |             ^
2023-09-08T21:19:47,636   ./base/sbml/math/MathML.cpp:1576:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,637    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,637         |                                ^
2023-09-08T21:19:47,638   ./base/sbml/math/MathML.cpp:1576:40: warning: ‘nonnull’ argument ‘inSemantics’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,638    1576 |   if (&node == NULL || &stream == NULL || &inSemantics == NULL) return;
2023-09-08T21:19:47,639         |                                        ^
2023-09-08T21:19:47,640   ./base/sbml/math/MathML.cpp: In function ‘void writeOperatorArgs(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,641   ./base/sbml/math/MathML.cpp:1435:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,641    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,642         |             ^
2023-09-08T21:19:47,643   ./base/sbml/math/MathML.cpp:1435:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,643    1435 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,644         |                                ^
2023-09-08T21:19:47,645   ./base/sbml/math/MathML.cpp: In function ‘void writeOperator(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,646   ./base/sbml/math/MathML.cpp:1500:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,646    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,647         |             ^
2023-09-08T21:19:47,647   ./base/sbml/math/MathML.cpp:1500:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,648    1500 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,648         |                                ^
2023-09-08T21:19:47,649   ./base/sbml/math/MathML.cpp: In function ‘void writeLambda(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,650   ./base/sbml/math/MathML.cpp:1395:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,650    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,651         |             ^
2023-09-08T21:19:47,651   ./base/sbml/math/MathML.cpp:1395:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,652    1395 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,652         |                                ^
2023-09-08T21:19:47,653   ./base/sbml/math/MathML.cpp: In function ‘void writePiecewise(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,653   ./base/sbml/math/MathML.cpp:1533:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,654    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,655         |             ^
2023-09-08T21:19:47,655   ./base/sbml/math/MathML.cpp:1533:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,656    1533 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,657         |                                ^
2023-09-08T21:19:47,658   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionLog(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,658   ./base/sbml/math/MathML.cpp:1286:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,659    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,660         |             ^
2023-09-08T21:19:47,661   ./base/sbml/math/MathML.cpp:1286:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,661    1286 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,662         |                                ^
2023-09-08T21:19:47,663   ./base/sbml/math/MathML.cpp: In function ‘void writeFunctionRoot(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,664   ./base/sbml/math/MathML.cpp:1309:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,664    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,665         |             ^
2023-09-08T21:19:47,666   ./base/sbml/math/MathML.cpp:1309:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,666    1309 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,667         |                                ^
2023-09-08T21:19:47,668   ./base/sbml/math/MathML.cpp: In function ‘void writeFunction(const ASTNode&, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T21:19:47,668   ./base/sbml/math/MathML.cpp:1336:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,669    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,670         |             ^
2023-09-08T21:19:47,671   ./base/sbml/math/MathML.cpp:1336:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,672    1336 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,672         |                                ^
2023-09-08T21:19:47,673   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCN(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:47,673   ./base/sbml/math/MathML.cpp:436:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,674     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,674         |             ^
2023-09-08T21:19:47,675   ./base/sbml/math/MathML.cpp:436:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,675     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,676         |                                 ^
2023-09-08T21:19:47,677   ./base/sbml/math/MathML.cpp:436:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,677     436 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,678         |                                         ^
2023-09-08T21:19:47,678   ./base/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:47,679   ./base/sbml/math/MathML.cpp:388:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,679     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,680         |             ^
2023-09-08T21:19:47,680   ./base/sbml/math/MathML.cpp:388:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,681     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,682         |                                 ^
2023-09-08T21:19:47,683   ./base/sbml/math/MathML.cpp:388:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,683     388 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,684         |                                         ^
2023-09-08T21:19:47,685   ./base/sbml/math/MathML.cpp: In function ‘void setType(ASTNode&, const XMLToken&, XMLInputStream&)’:
2023-09-08T21:19:47,686   ./base/sbml/math/MathML.cpp:585:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,687     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,687         |             ^
2023-09-08T21:19:47,688   ./base/sbml/math/MathML.cpp:585:33: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,689     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,689         |                                 ^
2023-09-08T21:19:47,690   ./base/sbml/math/MathML.cpp:585:41: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,691     585 |   if (&node == NULL || &element == NULL || &stream == NULL) return;
2023-09-08T21:19:47,691         |                                         ^
2023-09-08T21:19:47,692   ./base/sbml/math/MathML.cpp: In function ‘void readMathML(ASTNode&, XMLInputStream&, std::string, bool)’:
2023-09-08T21:19:47,693   ./base/sbml/math/MathML.cpp:650:13: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,693     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,694         |             ^
2023-09-08T21:19:47,695   ./base/sbml/math/MathML.cpp:650:32: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,696     650 |   if (&node == NULL || &stream == NULL) return;
2023-09-08T21:19:47,697         |                                ^
2023-09-08T21:19:47,698   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’:
2023-09-08T21:19:47,698   ./base/sbml/math/MathML.cpp:1629:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:19:47,699    1629 |   if (&stream == NULL) return NULL;
2023-09-08T21:19:47,699         |   ^~
2023-09-08T21:19:57,980   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:19:57,980                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:19:57,981                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:19:57,981                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:19:57,982                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:19:57,982                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2023-09-08T21:19:57,983                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2023-09-08T21:19:57,983   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:19:57,984      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:19:57,984         |                           ^~~~~~~~~~~~~~
2023-09-08T21:19:57,985   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:19:57,985                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:19:57,986                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:19:57,986                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:19:57,987   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:19:57,987     117 |     struct unary_function
2023-09-08T21:19:57,988         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:03,563   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:03,564                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:03,564                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:03,565                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:20:03,566                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T21:20:03,567                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2023-09-08T21:20:03,567   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:03,568      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:03,569         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:03,570   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:03,570                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:03,571                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:03,571                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:03,572                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:03,573                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2023-09-08T21:20:03,573   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:03,574     117 |     struct unary_function
2023-09-08T21:20:03,574         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:15,798   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:15,799                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:15,800                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:15,801                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:20:15,801                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2023-09-08T21:20:15,802                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2023-09-08T21:20:15,803   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:15,804      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:15,804         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:15,805   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:15,806                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:15,806                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:15,807                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:15,807                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:15,808                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2023-09-08T21:20:15,808   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:15,809     117 |     struct unary_function
2023-09-08T21:20:15,809         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:23,626   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:23,627                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:23,628                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:23,628                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:20:23,629                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2023-09-08T21:20:23,629                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2023-09-08T21:20:23,630   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:23,630      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:23,631         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:23,632   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:23,633                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:23,633                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:23,634                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:23,635                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:23,635                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2023-09-08T21:20:23,636   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:23,636     117 |     struct unary_function
2023-09-08T21:20:23,637         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:24,055   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2023-09-08T21:20:24,055   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:20:24,056     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:24,057         |                  ^
2023-09-08T21:20:24,057   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2023-09-08T21:20:24,058     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2023-09-08T21:20:24,059         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:20:24,059   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T21:20:24,060     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:24,061         |                                             ^
2023-09-08T21:20:24,062   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2023-09-08T21:20:24,063     451 |                               const std::string& wrongattribute)
2023-09-08T21:20:24,064         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T21:20:24,620   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:24,621     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:24,621         |                  ^
2023-09-08T21:20:24,622   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:24,622     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:24,623         |                                             ^
2023-09-08T21:20:29,358   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:29,358                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:29,359                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:29,359                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:20:29,360                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:20:29,360                    from ./base//sbml/packages/comp/sbml/CompBase.h:44,
2023-09-08T21:20:29,361                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:30:
2023-09-08T21:20:29,361   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:29,362      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:29,362         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:29,363   In file included from /usr/include/c++/12/bits/stl_tree.h:65,
2023-09-08T21:20:29,364                    from /usr/include/c++/12/set:60,
2023-09-08T21:20:29,364                    from ./base//sbml/packages/comp/sbml/CompBase.h:41:
2023-09-08T21:20:29,365   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:29,366     117 |     struct unary_function
2023-09-08T21:20:29,366         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:29,857   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:20:29,858   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:20:29,858     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:20:29,859         |                   ^
2023-09-08T21:20:29,860   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:48: note: ‘attributes’ declared here
2023-09-08T21:20:29,861     157 | CompBase::readAttributes (const XMLAttributes& attributes,
2023-09-08T21:20:29,861         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:20:29,862   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T21:20:29,862     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:20:29,863         |                                                  ^
2023-09-08T21:20:29,864   ./base/sbml/packages/comp/sbml/CompBase.cpp:158:53: note: ‘expectedAttributes’ declared here
2023-09-08T21:20:29,864     158 |                           const ExpectedAttributes& expectedAttributes)
2023-09-08T21:20:29,865         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:20:29,866   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T21:20:29,867   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:20:29,867     202 |   if(&element == NULL) return;
2023-09-08T21:20:29,868         |               ^
2023-09-08T21:20:29,869   ./base/sbml/packages/comp/sbml/CompBase.cpp:200:48: note: ‘element’ declared here
2023-09-08T21:20:29,869     200 | CompBase::logUnknownElement(const std::string &element)
2023-09-08T21:20:29,870         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:20:29,877   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T21:20:29,878   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:20:29,878     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,879         |                  ^
2023-09-08T21:20:29,879   ./base/sbml/packages/comp/sbml/CompBase.cpp:223:50: note: ‘attribute’ declared here
2023-09-08T21:20:29,880     223 | CompBase::logUnknownAttribute(const std::string &attribute,
2023-09-08T21:20:29,881         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:20:29,881   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:20:29,882     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,882         |                                      ^
2023-09-08T21:20:29,883   ./base/sbml/packages/comp/sbml/CompBase.cpp:224:50: note: ‘element’ declared here
2023-09-08T21:20:29,883     224 |                               const std::string& element)
2023-09-08T21:20:29,884         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:20:29,891   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T21:20:29,891   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:20:29,892     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,893         |                  ^
2023-09-08T21:20:29,894   ./base/sbml/packages/comp/sbml/CompBase.cpp:256:45: note: ‘attribute’ declared here
2023-09-08T21:20:29,895     256 | CompBase::logEmptyString(const std::string &attribute,
2023-09-08T21:20:29,895         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:20:29,896   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:20:29,897     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,898         |                                      ^
2023-09-08T21:20:29,898   ./base/sbml/packages/comp/sbml/CompBase.cpp:257:45: note: ‘element’ declared here
2023-09-08T21:20:29,899     257 |                          const std::string& element)
2023-09-08T21:20:29,899         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:20:29,902   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:20:29,903   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:20:29,904     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:29,904         |                  ^
2023-09-08T21:20:29,905   ./base/sbml/packages/comp/sbml/CompBase.cpp:277:43: note: ‘attribute’ declared here
2023-09-08T21:20:29,906     277 | CompBase::logInvalidId(const std::string& attribute,
2023-09-08T21:20:29,907         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:20:29,908   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T21:20:29,908     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:29,909         |                                             ^
2023-09-08T21:20:29,909   ./base/sbml/packages/comp/sbml/CompBase.cpp:278:43: note: ‘wrongattribute’ declared here
2023-09-08T21:20:29,910     278 |                        const std::string& wrongattribute,
2023-09-08T21:20:29,910         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T21:20:29,929   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T21:20:29,929   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T21:20:29,930     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,930         |                  ^
2023-09-08T21:20:29,931   ./base/sbml/packages/comp/sbml/CompBase.cpp:374:50: note: ‘attribute’ declared here
2023-09-08T21:20:29,931     374 | CompBase::logMissingAttribute(const std::string& attribute,
2023-09-08T21:20:29,932         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:20:29,932   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:20:29,933     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:29,933         |                                      ^
2023-09-08T21:20:29,934   ./base/sbml/packages/comp/sbml/CompBase.cpp:375:50: note: ‘element’ declared here
2023-09-08T21:20:29,935     375 |                               const std::string& element)
2023-09-08T21:20:29,935         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:20:30,623   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T21:20:30,623   ./base/sbml/packages/comp/sbml/CompBase.cpp:202:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,624     202 |   if(&element == NULL) return;
2023-09-08T21:20:30,625         |   ^~
2023-09-08T21:20:30,626   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T21:20:30,627   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,629     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,630         |                  ^
2023-09-08T21:20:30,631   ./base/sbml/packages/comp/sbml/CompBase.cpp:226:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,632     226 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,633         |                                      ^
2023-09-08T21:20:30,634   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T21:20:30,636   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,637     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,638         |                  ^
2023-09-08T21:20:30,640   ./base/sbml/packages/comp/sbml/CompBase.cpp:260:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,641     260 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,715         |                                      ^
2023-09-08T21:20:30,717   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:20:30,717   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,718     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:30,719         |                  ^
2023-09-08T21:20:30,720   ./base/sbml/packages/comp/sbml/CompBase.cpp:282:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,720     282 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T21:20:30,721         |                                             ^
2023-09-08T21:20:30,722   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T21:20:30,723   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,723     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,724         |                  ^
2023-09-08T21:20:30,725   ./base/sbml/packages/comp/sbml/CompBase.cpp:378:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,726     378 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T21:20:30,727         |                                      ^
2023-09-08T21:20:30,728   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T21:20:30,729   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,730     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:20:30,731         |                   ^
2023-09-08T21:20:30,732   ./base/sbml/packages/comp/sbml/CompBase.cpp:161:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:30,733     161 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T21:20:30,734         |                                                  ^
2023-09-08T21:20:36,381   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:36,382                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:36,383                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:36,383                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:20:36,384                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:20:36,385                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:20:36,386                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2023-09-08T21:20:36,386   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:36,387      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:36,388         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:36,388   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:36,389                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:36,390                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:36,390                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:36,391                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:36,392                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:20:36,392                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2023-09-08T21:20:36,394   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:36,394     117 |     struct unary_function
2023-09-08T21:20:36,395         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:42,171   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:42,172                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:42,172                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:42,173                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:20:42,173                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:20:42,174                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:20:42,174                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2023-09-08T21:20:42,175   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:42,176      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:42,176         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:42,177   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:42,177                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:42,178                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:42,178                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:42,179                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:42,179                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:20:42,180                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2023-09-08T21:20:42,181   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:42,182     117 |     struct unary_function
2023-09-08T21:20:42,182         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:51,505   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:51,505                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:51,506                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:51,506                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:20:51,507                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:20:51,508                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:20:51,508                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2023-09-08T21:20:51,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:51,510      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:51,510         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:51,511   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:51,512                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:51,512                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:51,513                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:51,513                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:51,514                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:20:51,515                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2023-09-08T21:20:51,515   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:51,516     117 |     struct unary_function
2023-09-08T21:20:51,517         |            ^~~~~~~~~~~~~~
2023-09-08T21:20:51,902   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2023-09-08T21:20:51,903   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:20:51,904     118 |   if (&(sid) != NULL)
2023-09-08T21:20:51,904         |              ^
2023-09-08T21:20:51,905   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2023-09-08T21:20:51,905     113 | ListOfDeletions::remove (const std::string& sid)
2023-09-08T21:20:51,906         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:20:52,459   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:20:52,460     118 |   if (&(sid) != NULL)
2023-09-08T21:20:52,460         |   ^~
2023-09-08T21:20:56,387   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:20:56,387                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:20:56,388                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:20:56,389                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:20:56,389                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:20:56,390                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:20:56,390                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2023-09-08T21:20:56,391   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:20:56,391      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:20:56,392         |                           ^~~~~~~~~~~~~~
2023-09-08T21:20:56,393   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:20:56,393                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:20:56,394                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:20:56,395                    from /usr/include/c++/12/ios:42,
2023-09-08T21:20:56,395                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:20:56,396                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:20:56,397                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2023-09-08T21:20:56,397   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:20:56,398     117 |     struct unary_function
2023-09-08T21:20:56,399         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:01,296   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:01,296                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:01,297                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:01,298                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:01,298                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:01,299                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:01,300                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2023-09-08T21:21:01,300   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:01,301      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:01,302         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:01,302   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:01,303                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:01,304                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:01,305                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:01,305                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:01,306                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:01,307                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2023-09-08T21:21:01,308   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:01,308     117 |     struct unary_function
2023-09-08T21:21:01,309         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:06,182   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:06,183                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:06,183                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:06,183                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:06,184                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:06,184                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:06,185                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2023-09-08T21:21:06,185   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:06,186      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:06,186         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:06,187   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:06,187                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:06,188                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:06,188                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:06,189                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:06,190                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:06,190                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2023-09-08T21:21:06,191   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:06,192     117 |     struct unary_function
2023-09-08T21:21:06,192         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:06,579   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2023-09-08T21:21:06,580   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:21:06,580     113 |   if (&(sid) != NULL)
2023-09-08T21:21:06,581         |              ^
2023-09-08T21:21:06,582   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2023-09-08T21:21:06,582     108 | ListOfPorts::remove (const std::string& sid)
2023-09-08T21:21:06,583         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:21:07,129   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:21:07,129     113 |   if (&(sid) != NULL)
2023-09-08T21:21:07,130         |   ^~
2023-09-08T21:21:11,029   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:11,029                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:11,030                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:11,031                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:11,031                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:11,032                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:11,033                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2023-09-08T21:21:11,034   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:11,034      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:11,035         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:11,036   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:11,037                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:11,037                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:11,038                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:11,038                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:11,039                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:11,039                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2023-09-08T21:21:11,040   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:11,040     117 |     struct unary_function
2023-09-08T21:21:11,041         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:15,566   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:15,567                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:15,567                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:15,568                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:15,568                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:15,569                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:15,569                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2023-09-08T21:21:15,570   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:15,570      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:15,571         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:15,572   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:15,572                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:15,573                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:15,574                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:15,574                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:15,575                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:15,576                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2023-09-08T21:21:15,576   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:15,577     117 |     struct unary_function
2023-09-08T21:21:15,578         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:15,973   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2023-09-08T21:21:15,974   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T21:21:15,975     113 |   if (&(sid) != NULL)
2023-09-08T21:21:15,975         |              ^
2023-09-08T21:21:15,976   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2023-09-08T21:21:15,977     108 | ListOfSubmodels::remove (const std::string& sid)
2023-09-08T21:21:15,977         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:21:16,532   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:21:16,533     113 |   if (&(sid) != NULL)
2023-09-08T21:21:16,533         |   ^~
2023-09-08T21:21:20,488   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:20,488                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:20,489                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:20,490                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:20,491                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:20,491                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:20,492                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2023-09-08T21:21:20,493   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:20,493      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:20,494         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:20,494   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:20,495                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:20,495                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:20,496                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:20,496                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:20,497                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:20,497                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2023-09-08T21:21:20,498   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:20,498     117 |     struct unary_function
2023-09-08T21:21:20,499         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:25,163   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:25,164                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:25,165                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:25,165                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:25,166                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:25,166                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:25,167                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2023-09-08T21:21:25,168   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:25,168      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:25,169         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:25,170   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:25,171                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:25,171                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:25,172                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:25,172                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:25,173                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:25,174                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2023-09-08T21:21:25,174   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:25,175     117 |     struct unary_function
2023-09-08T21:21:25,176         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:30,795   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2023-09-08T21:21:30,795                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2023-09-08T21:21:30,796   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:30,796      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:30,797         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:30,798   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:30,798                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:30,799                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:30,800                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:30,800                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:30,801                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:30,802                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2023-09-08T21:21:30,803   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:30,803     117 |     struct unary_function
2023-09-08T21:21:30,804         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:35,884   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:35,885                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:35,885                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:35,886                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:35,886                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:35,887                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:35,888                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2023-09-08T21:21:35,888   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:35,889      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:35,889         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:35,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:35,890                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:35,891                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:35,891                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:35,892                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:35,893                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:35,893                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2023-09-08T21:21:35,894   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:35,894     117 |     struct unary_function
2023-09-08T21:21:35,895         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:43,025   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:43,025                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:43,026                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:43,027                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:43,027                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:43,028                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:43,029                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2023-09-08T21:21:43,029   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:43,030      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:43,031         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:43,031   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:43,032                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:43,033                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:43,033                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:43,034                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:43,035                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:43,035                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2023-09-08T21:21:43,036   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:43,037     117 |     struct unary_function
2023-09-08T21:21:43,037         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:50,192   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:21:50,193                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:21:50,193                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:21:50,194                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:21:50,195                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:21:50,195                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T21:21:50,196                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:37:
2023-09-08T21:21:50,196   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:50,197      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:50,197         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:50,198   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:50,198                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:50,199                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:50,199                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:50,200                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:50,200                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:50,201                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:28:
2023-09-08T21:21:50,201   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:50,202     117 |     struct unary_function
2023-09-08T21:21:50,202         |            ^~~~~~~~~~~~~~
2023-09-08T21:21:59,323   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:21:59,323                    from ./base//sbml/RateRule.h:113,
2023-09-08T21:21:59,324                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2023-09-08T21:21:59,324   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:21:59,325      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:21:59,326         |                           ^~~~~~~~~~~~~~
2023-09-08T21:21:59,326   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:21:59,327                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:21:59,328                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:21:59,328                    from /usr/include/c++/12/ios:42,
2023-09-08T21:21:59,329                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:21:59,330                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:21:59,331                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2023-09-08T21:21:59,331   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:21:59,332     117 |     struct unary_function
2023-09-08T21:21:59,332         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:12,787   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:22:12,788                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:22:12,789                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:22:12,789                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:22:12,790                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T21:22:12,791                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:470,
2023-09-08T21:22:12,791                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2023-09-08T21:22:12,792   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:12,793      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:12,793         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:12,794   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:22:12,795                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:22:12,796                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:22:12,797                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:469:
2023-09-08T21:22:12,797   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:12,798     117 |     struct unary_function
2023-09-08T21:22:12,798         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:13,399   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:22:13,399   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:22:13,400     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T21:22:13,401         |              ^
2023-09-08T21:22:13,401   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:132:54: note: ‘props’ declared here
2023-09-08T21:22:13,402     132 |                         (const ConversionProperties &props) const
2023-09-08T21:22:13,402         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:22:14,392   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:14,392     134 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T21:22:14,393         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:22:23,342   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:22:23,342                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:22:23,343                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:22:23,344                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2023-09-08T21:22:23,344   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:23,345      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:23,346         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:23,347   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:22:23,347                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2023-09-08T21:22:23,348                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2023-09-08T21:22:23,349   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:23,350     117 |     struct unary_function
2023-09-08T21:22:23,350         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:23,745   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T21:22:23,746   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:22:23,747      54 |   if (&orig == NULL)
2023-09-08T21:22:23,747         |             ^
2023-09-08T21:22:23,748   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2023-09-08T21:22:23,749      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2023-09-08T21:22:23,750         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:22:23,750   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2023-09-08T21:22:23,751   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:22:23,752      80 |   if (&rhs == NULL)
2023-09-08T21:22:23,753         |            ^
2023-09-08T21:22:23,754   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2023-09-08T21:22:23,754      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2023-09-08T21:22:23,755         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:22:24,294   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:24,294      80 |   if (&rhs == NULL)
2023-09-08T21:22:24,295         |   ^~
2023-09-08T21:22:24,303   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T21:22:24,304   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:24,304      54 |   if (&orig == NULL)
2023-09-08T21:22:24,305         |   ^~
2023-09-08T21:22:28,653   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:22:28,653                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:22:28,654                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:22:28,654                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2023-09-08T21:22:28,655   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:28,655      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:28,656         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:28,657   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:22:28,657                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2023-09-08T21:22:28,658                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2023-09-08T21:22:28,659   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:28,660     117 |     struct unary_function
2023-09-08T21:22:28,660         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:28,962   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T21:22:28,962   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:22:28,963      50 |   if (&orig == NULL)
2023-09-08T21:22:28,964         |             ^
2023-09-08T21:22:28,964   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2023-09-08T21:22:28,965      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2023-09-08T21:22:28,966         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:22:28,967   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T21:22:28,967   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:22:28,968      76 |   if (&rhs == NULL)
2023-09-08T21:22:28,969         |            ^
2023-09-08T21:22:28,969   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2023-09-08T21:22:28,970      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2023-09-08T21:22:28,971         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:22:29,430   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T21:22:29,430   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:29,431      50 |   if (&orig == NULL)
2023-09-08T21:22:29,432         |   ^~
2023-09-08T21:22:29,432   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T21:22:29,433   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:29,434      76 |   if (&rhs == NULL)
2023-09-08T21:22:29,435         |   ^~
2023-09-08T21:22:32,579   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:22:32,579                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:22:32,580                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:22:32,580                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2023-09-08T21:22:32,581   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:32,581      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:32,582         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:32,582   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T21:22:32,583                    from /usr/include/c++/12/vector:66,
2023-09-08T21:22:32,583                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2023-09-08T21:22:32,584   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:32,584     117 |     struct unary_function
2023-09-08T21:22:32,585         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:37,279   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:22:37,280                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:22:37,280                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:22:37,281                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2023-09-08T21:22:37,282   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:37,282      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:37,283         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:37,284   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:22:37,285                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2023-09-08T21:22:37,285                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2023-09-08T21:22:37,286   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:37,287     117 |     struct unary_function
2023-09-08T21:22:37,288         |            ^~~~~~~~~~~~~~
2023-09-08T21:22:37,594   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T21:22:37,594   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:22:37,595      53 |   if (&orig == NULL)
2023-09-08T21:22:37,596         |             ^
2023-09-08T21:22:37,597   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2023-09-08T21:22:37,598      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2023-09-08T21:22:37,598         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:22:37,599   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T21:22:37,600   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:22:37,600      83 |   if (&rhs == NULL)
2023-09-08T21:22:37,601         |            ^
2023-09-08T21:22:37,602   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2023-09-08T21:22:37,603      81 | SBMLUri::operator=(const SBMLUri& rhs)
2023-09-08T21:22:37,603         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T21:22:37,613   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2023-09-08T21:22:37,614   ./base/sbml/packages/comp/util/SBMLUri.cpp:164:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T21:22:37,615     164 |     ptr_fun<int,int>(tolower)); // scheme is icase
2023-09-08T21:22:37,615         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:22:37,616   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T21:22:37,617    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T21:22:37,617         |     ^~~~~~~
2023-09-08T21:22:37,621   ./base/sbml/packages/comp/util/SBMLUri.cpp:202:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T21:22:37,622     202 |      ptr_fun<int,int>(tolower)); // host is icase
2023-09-08T21:22:37,622         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T21:22:37,623   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T21:22:37,623    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T21:22:37,624         |     ^~~~~~~
2023-09-08T21:22:38,169   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T21:22:38,169   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:38,170      53 |   if (&orig == NULL)
2023-09-08T21:22:38,170         |   ^~
2023-09-08T21:22:38,171   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T21:22:38,172   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:22:38,172      83 |   if (&rhs == NULL)
2023-09-08T21:22:38,173         |   ^~
2023-09-08T21:22:43,463   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:22:43,463                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:22:43,464                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:22:43,465                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2023-09-08T21:22:43,465                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2023-09-08T21:22:43,466   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:22:43,467      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:22:43,467         |                           ^~~~~~~~~~~~~~
2023-09-08T21:22:43,468   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:22:43,469                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T21:22:43,470                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2023-09-08T21:22:43,470                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2023-09-08T21:22:43,471   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:22:43,471     117 |     struct unary_function
2023-09-08T21:22:43,472         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:00,484   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:00,484                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:00,485                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:00,486                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2023-09-08T21:23:00,486                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2023-09-08T21:23:00,487   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:00,488      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:00,488         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:00,489   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:00,489                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T21:23:00,490                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2023-09-08T21:23:00,490                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2023-09-08T21:23:00,491   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:00,491     117 |     struct unary_function
2023-09-08T21:23:00,492         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:04,662   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:04,662                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:04,663                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:04,663                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2023-09-08T21:23:04,664                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2023-09-08T21:23:04,664   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:04,665      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:04,666         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:04,666   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:04,667                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T21:23:04,668                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2023-09-08T21:23:04,669                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2023-09-08T21:23:04,669   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:04,670     117 |     struct unary_function
2023-09-08T21:23:04,671         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:08,851   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:08,852                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:08,852                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:08,853                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2023-09-08T21:23:08,854   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:08,855      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:08,856         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:08,857   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:23:08,858                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2023-09-08T21:23:08,859   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:08,860     117 |     struct unary_function
2023-09-08T21:23:08,861         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:09,614   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:09,615      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T21:23:09,615         |                       ^~~~~~~~~~~~~~
2023-09-08T21:23:09,616   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:09,617     117 |     struct unary_function
2023-09-08T21:23:09,618         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:09,828   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:23:09,829   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T21:23:09,829     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T21:23:09,830         |            ^
2023-09-08T21:23:09,831   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2023-09-08T21:23:09,831     325 |   virtual bool visit (const SBase &x)
2023-09-08T21:23:09,832         |                       ~~~~~~~~~~~~~^
2023-09-08T21:23:09,849   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T21:23:09,850   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T21:23:09,851     481 |   if (&d == NULL) return 0;
2023-09-08T21:23:09,851         |          ^
2023-09-08T21:23:09,852   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2023-09-08T21:23:09,852     479 | CompValidator::validate (const SBMLDocument& d)
2023-09-08T21:23:09,853         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T21:23:09,867   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T21:23:09,868   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:23:09,869     610 |   if (&filename == NULL) return 0;
2023-09-08T21:23:09,869         |                 ^
2023-09-08T21:23:09,870   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2023-09-08T21:23:09,871     608 | CompValidator::validate (const std::string& filename)
2023-09-08T21:23:09,871         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:23:10,818   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:23:10,818   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:23:10,819     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T21:23:10,819         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:23:10,839   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T21:23:10,840   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:23:10,840     481 |   if (&d == NULL) return 0;
2023-09-08T21:23:10,841         |   ^~
2023-09-08T21:23:10,873   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T21:23:10,873   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:23:10,874     610 |   if (&filename == NULL) return 0;
2023-09-08T21:23:10,875         |   ^~
2023-09-08T21:23:16,239   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:23:16,240                    from ./base//sbml/Model.h:446,
2023-09-08T21:23:16,240                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2023-09-08T21:23:16,241   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:16,242      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:16,242         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:16,243   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:16,244                    from ./base//sbml/Model.h:444:
2023-09-08T21:23:16,244   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:16,245     117 |     struct unary_function
2023-09-08T21:23:16,245         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:20,850   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:20,851                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:20,851                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:20,852                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2023-09-08T21:23:20,852   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:20,853      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:20,853         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:20,854   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:20,855                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:23:20,855   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:20,856     117 |     struct unary_function
2023-09-08T21:23:20,856         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:25,577   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:25,578                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:25,578                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:25,579                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T21:23:25,579                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2023-09-08T21:23:25,580   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:25,581      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:25,581         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:25,582   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:25,583                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2023-09-08T21:23:25,584   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:25,584     117 |     struct unary_function
2023-09-08T21:23:25,585         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:30,095   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:30,095                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:30,096                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:30,097                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2023-09-08T21:23:30,097   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:30,098      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:30,099         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:30,100   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:30,100                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:23:30,101   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:30,102     117 |     struct unary_function
2023-09-08T21:23:30,103         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:34,248   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:34,248                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:34,249                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:34,249                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2023-09-08T21:23:34,250   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:34,250      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:34,251         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:34,251   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:34,252                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:23:34,252   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:34,253     117 |     struct unary_function
2023-09-08T21:23:34,253         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:38,536   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:23:38,537                    from ./base//sbml/Model.h:446,
2023-09-08T21:23:38,537                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2023-09-08T21:23:38,538   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:38,538      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:38,539         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:38,540   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:38,540                    from ./base//sbml/Model.h:444:
2023-09-08T21:23:38,541   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:38,542     117 |     struct unary_function
2023-09-08T21:23:38,543         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:46,218   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:23:46,219                    from ./base//sbml/Model.h:446,
2023-09-08T21:23:46,220                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2023-09-08T21:23:46,220   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:46,221      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:46,222         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:46,223   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:46,223                    from ./base//sbml/Model.h:444:
2023-09-08T21:23:46,224   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:46,224     117 |     struct unary_function
2023-09-08T21:23:46,225         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:50,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:23:50,954                    from ./base//sbml/Model.h:446,
2023-09-08T21:23:50,955                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2023-09-08T21:23:50,955   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:50,956      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:50,957         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:50,957   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:50,958                    from ./base//sbml/Model.h:444:
2023-09-08T21:23:50,959   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:50,960     117 |     struct unary_function
2023-09-08T21:23:50,960         |            ^~~~~~~~~~~~~~
2023-09-08T21:23:59,257   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:23:59,257                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:23:59,257                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:23:59,258                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T21:23:59,258                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2023-09-08T21:23:59,259                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2023-09-08T21:23:59,260   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:23:59,260      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:23:59,261         |                           ^~~~~~~~~~~~~~
2023-09-08T21:23:59,261   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:23:59,262                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:23:59,263                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:23:59,263                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:23:59,264                    from ./base//sbml/SBase.h:145,
2023-09-08T21:23:59,264                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2023-09-08T21:23:59,265   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:23:59,265     117 |     struct unary_function
2023-09-08T21:23:59,266         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:04,676   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:04,677                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:04,678                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2023-09-08T21:24:04,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:04,679      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:04,680         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:04,680   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:04,681                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:04,682   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:04,683     117 |     struct unary_function
2023-09-08T21:24:04,683         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:09,051   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:09,052                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:09,053                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2023-09-08T21:24:09,054   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:09,054      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:09,055         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:09,056   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:09,057                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:09,058   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:09,059     117 |     struct unary_function
2023-09-08T21:24:09,060         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:13,362   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:13,362                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:13,363                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2023-09-08T21:24:13,364   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:13,365      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:13,366         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:13,366   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:13,367                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:13,367   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:13,368     117 |     struct unary_function
2023-09-08T21:24:13,368         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:17,677   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:17,677                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:17,678                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2023-09-08T21:24:17,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:17,679      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:17,679         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:17,680   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:17,680                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:17,681   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:17,681     117 |     struct unary_function
2023-09-08T21:24:17,682         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:22,124   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:22,125                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:22,125                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2023-09-08T21:24:22,126   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:22,126      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:22,127         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:22,128   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:22,129                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:22,130   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:22,130     117 |     struct unary_function
2023-09-08T21:24:22,131         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:26,828   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:26,829                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:26,830                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2023-09-08T21:24:26,830   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:26,831      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:26,832         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:26,832   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:26,833                    from ./base//sbml/Model.h:444:
2023-09-08T21:24:26,833   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:26,834     117 |     struct unary_function
2023-09-08T21:24:26,835         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:32,253   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:32,254                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:24:32,254                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:24:32,255                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:24:32,256                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:24:32,257                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2023-09-08T21:24:32,257                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2023-09-08T21:24:32,258   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:32,259      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:32,259         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:32,260   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:32,260                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:24:32,261                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:24:32,261                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:24:32,262   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:32,262     117 |     struct unary_function
2023-09-08T21:24:32,263         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:32,695   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:24:32,696                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:24:32,696                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2023-09-08T21:24:32,697   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:32,698     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:32,698         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:24:32,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:32,699     117 |     struct unary_function
2023-09-08T21:24:32,700         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:32,707   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:32,708     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:32,709         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:24:32,710   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:32,710     117 |     struct unary_function
2023-09-08T21:24:32,711         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:32,729   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:24:32,730   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:32,731     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:32,731         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:24:32,732   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:32,733     117 |     struct unary_function
2023-09-08T21:24:32,733         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:37,703   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:37,704                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:37,704                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2023-09-08T21:24:37,705                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2023-09-08T21:24:37,706   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:37,706      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:37,707         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:37,708   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:37,708                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:24:37,709                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:24:37,710                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2023-09-08T21:24:37,710   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:37,711     117 |     struct unary_function
2023-09-08T21:24:37,711         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:38,095   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:24:38,096                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2023-09-08T21:24:38,096   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:38,097     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:38,097         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:24:38,098   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:38,099     117 |     struct unary_function
2023-09-08T21:24:38,099         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:38,104   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:38,105     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:38,106         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:24:38,106   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:38,107     117 |     struct unary_function
2023-09-08T21:24:38,107         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:38,123   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:24:38,124   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:38,125     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:38,126         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:24:38,127   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:38,127     117 |     struct unary_function
2023-09-08T21:24:38,128         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:44,169   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:44,170                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:24:44,170                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:24:44,171                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2023-09-08T21:24:44,172                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2023-09-08T21:24:44,172                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2023-09-08T21:24:44,173   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:44,174      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:44,174         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:44,175   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:44,175                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:24:44,176                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:24:44,177                    from /usr/include/c++/12/ios:42,
2023-09-08T21:24:44,177                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:24:44,178                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2023-09-08T21:24:44,179   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:44,180     117 |     struct unary_function
2023-09-08T21:24:44,181         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:48,470   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:24:48,470                    from ./base//sbml/Model.h:446,
2023-09-08T21:24:48,471                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2023-09-08T21:24:48,471                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2023-09-08T21:24:48,472   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:48,472      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:48,473         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:48,473   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:48,474                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:24:48,474                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:24:48,475                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2023-09-08T21:24:48,475   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:48,476     117 |     struct unary_function
2023-09-08T21:24:48,476         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:48,866   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:24:48,866                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2023-09-08T21:24:48,867   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:48,867     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:48,868         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:24:48,869   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:48,869     117 |     struct unary_function
2023-09-08T21:24:48,870         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:48,878   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:48,878     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:48,879         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:24:48,880   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:48,880     117 |     struct unary_function
2023-09-08T21:24:48,881         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:48,899   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2023-09-08T21:24:48,900   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:48,900     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:24:48,901         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:24:48,902   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:48,902     117 |     struct unary_function
2023-09-08T21:24:48,903         |            ^~~~~~~~~~~~~~
2023-09-08T21:24:54,579   In file included from ./base//sbml/packages/fbc/sbml/Association.h:51,
2023-09-08T21:24:54,580                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2023-09-08T21:24:54,581   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:24:54,582      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:24:54,582         |                           ^~~~~~~~~~~~~~
2023-09-08T21:24:54,583   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:24:54,584                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:24:54,584                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:24:54,585                    from /usr/include/c++/12/ios:42,
2023-09-08T21:24:54,585                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:24:54,586                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:24:54,586                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2023-09-08T21:24:54,587   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:24:54,587     117 |     struct unary_function
2023-09-08T21:24:54,588         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:02,506   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:71,
2023-09-08T21:25:02,506                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2023-09-08T21:25:02,506   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:02,507      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:02,508         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:02,508   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:02,509                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:25:02,509                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:25:02,510                    from /usr/include/c++/12/ios:42,
2023-09-08T21:25:02,510                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:25:02,511                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:25:02,512                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2023-09-08T21:25:02,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:02,513     117 |     struct unary_function
2023-09-08T21:25:02,513         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:10,076   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2023-09-08T21:25:10,076                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2023-09-08T21:25:10,077   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:10,078      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:10,079         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:10,080   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:10,080                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:25:10,081                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:25:10,082                    from /usr/include/c++/12/ios:42,
2023-09-08T21:25:10,083                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:25:10,083                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:25:10,084                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2023-09-08T21:25:10,085   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:10,085     117 |     struct unary_function
2023-09-08T21:25:10,086         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:10,635   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:10,636     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:10,637         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:10,638   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:10,638     117 |     struct unary_function
2023-09-08T21:25:10,639         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:17,091   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2023-09-08T21:25:17,092                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2023-09-08T21:25:17,092   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:17,093      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:17,093         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:17,094   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:17,094                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:25:17,095                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:25:17,096                    from /usr/include/c++/12/ios:42,
2023-09-08T21:25:17,096                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:25:17,097                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:25:17,097                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2023-09-08T21:25:17,098   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:17,099     117 |     struct unary_function
2023-09-08T21:25:17,099         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:17,664   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:17,665     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:17,665         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:25:17,666   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:17,667     117 |     struct unary_function
2023-09-08T21:25:17,667         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:23,906   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T21:25:23,907                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2023-09-08T21:25:23,908   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:23,908      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:23,909         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:23,910   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:23,911                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:25:23,912                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:25:23,912                    from /usr/include/c++/12/ios:42,
2023-09-08T21:25:23,913                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:25:23,914                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:25:23,914                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2023-09-08T21:25:23,915   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:23,916     117 |     struct unary_function
2023-09-08T21:25:23,916         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:24,466   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70:
2023-09-08T21:25:24,467   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:24,468     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:24,469         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:24,469   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:24,470     117 |     struct unary_function
2023-09-08T21:25:24,471         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:24,476   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:24,477     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:24,478         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:25:24,478   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:24,479     117 |     struct unary_function
2023-09-08T21:25:24,479         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:31,995   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:25:31,995                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:25:31,996                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:25:31,996                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:25:31,997                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:25:31,997                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2023-09-08T21:25:31,998                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2023-09-08T21:25:31,998   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:31,999      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:31,999         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:32,000   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:32,000                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:25:32,001                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:25:32,001                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2023-09-08T21:25:32,002   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:32,003     117 |     struct unary_function
2023-09-08T21:25:32,003         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:32,392   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:25:32,393                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:25:32,394                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T21:25:32,394                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2023-09-08T21:25:32,395   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:32,396     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:32,397         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:32,397   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:32,398     117 |     struct unary_function
2023-09-08T21:25:32,399         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:32,405   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:32,406     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:32,406         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:25:32,407   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:32,408     117 |     struct unary_function
2023-09-08T21:25:32,408         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:32,427   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:25:32,427   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:32,428     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:32,429         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:25:32,430   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:32,431     117 |     struct unary_function
2023-09-08T21:25:32,431         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:32,443   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:25:32,443   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:25:32,444     109 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T21:25:32,444         |              ^
2023-09-08T21:25:32,445   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:107:68: note: ‘props’ declared here
2023-09-08T21:25:32,445     107 | CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:25:32,446         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:25:33,294   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:25:33,295     109 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T21:25:33,295         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:25:39,837   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:25:39,837                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:25:39,838                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:25:39,839                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:25:39,839                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T21:25:39,840                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2023-09-08T21:25:39,841                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2023-09-08T21:25:39,841   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:39,842      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:39,842         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:39,843   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:39,844                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:25:39,844                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:25:39,845                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2023-09-08T21:25:39,846   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:39,846     117 |     struct unary_function
2023-09-08T21:25:39,847         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:40,239   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:25:40,240                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:25:40,241                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T21:25:40,241                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2023-09-08T21:25:40,242   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:40,243     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:40,243         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:40,244   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:40,245     117 |     struct unary_function
2023-09-08T21:25:40,245         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:40,249   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:40,250     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:40,251         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:25:40,252   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:40,252     117 |     struct unary_function
2023-09-08T21:25:40,253         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:40,269   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:25:40,270   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:40,270     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:40,271         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:25:40,271   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:40,272     117 |     struct unary_function
2023-09-08T21:25:40,273         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:40,281   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T21:25:40,282   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T21:25:40,282      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T21:25:40,283         |              ^
2023-09-08T21:25:40,284   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2023-09-08T21:25:40,284      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T21:25:40,285         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:25:41,100   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:25:41,101      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T21:25:41,101         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:25:46,291   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:25:46,292                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:25:46,292                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:25:46,293                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2023-09-08T21:25:46,294                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2023-09-08T21:25:46,294   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:46,295      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:46,296         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:46,296   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:46,297                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T21:25:46,298                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2023-09-08T21:25:46,298                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2023-09-08T21:25:46,299   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:46,301     117 |     struct unary_function
2023-09-08T21:25:46,302         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:46,882   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:25:46,882                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T21:25:46,883   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:46,884     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:46,884         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:46,885   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:46,885     117 |     struct unary_function
2023-09-08T21:25:46,886         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:46,891   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:46,891     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:46,892         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:25:46,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:46,894     117 |     struct unary_function
2023-09-08T21:25:46,894         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:50,741   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:25:50,741                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:25:50,742                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:25:50,743                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2023-09-08T21:25:50,743                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2023-09-08T21:25:50,744   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:50,744      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:50,745         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:50,746   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:25:50,747                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T21:25:50,748                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2023-09-08T21:25:50,748                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2023-09-08T21:25:50,749   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:50,750     117 |     struct unary_function
2023-09-08T21:25:50,751         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:54,554   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:25:54,554                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:25:54,555                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:25:54,555                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2023-09-08T21:25:54,556   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:54,557      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:25:54,557         |                           ^~~~~~~~~~~~~~
2023-09-08T21:25:54,558   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:25:54,559                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2023-09-08T21:25:54,559   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:54,560     117 |     struct unary_function
2023-09-08T21:25:54,561         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,157   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:25:55,158                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:25:55,159                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T21:25:55,160                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2023-09-08T21:25:55,160   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:55,161     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:55,161         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:25:55,162   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:55,162     117 |     struct unary_function
2023-09-08T21:25:55,163         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,170   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:55,170     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:55,171         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:25:55,172   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:55,172     117 |     struct unary_function
2023-09-08T21:25:55,173         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,191   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:25:55,192   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:55,193     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:25:55,193         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,194   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:55,195     117 |     struct unary_function
2023-09-08T21:25:55,195         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,202   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:25:55,202      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T21:25:55,203         |                       ^~~~~~~~~~~~~~
2023-09-08T21:25:55,204   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:25:55,204     117 |     struct unary_function
2023-09-08T21:25:55,205         |            ^~~~~~~~~~~~~~
2023-09-08T21:25:55,370   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:25:55,371   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T21:25:55,372     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T21:25:55,372         |            ^
2023-09-08T21:25:55,373   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2023-09-08T21:25:55,374     288 |   virtual bool visit (const SBase &x)
2023-09-08T21:25:55,374         |                       ~~~~~~~~~~~~~^
2023-09-08T21:25:55,388   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T21:25:55,389   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T21:25:55,389     383 |   if (&d == NULL) return 0;
2023-09-08T21:25:55,390         |          ^
2023-09-08T21:25:55,391   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2023-09-08T21:25:55,392     381 | FbcValidator::validate (const SBMLDocument& d)
2023-09-08T21:25:55,393         |                         ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T21:25:55,394   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T21:25:55,394   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:25:55,395     413 |   if (&filename == NULL) return 0;
2023-09-08T21:25:55,395         |                 ^
2023-09-08T21:25:55,396   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2023-09-08T21:25:55,396     411 | FbcValidator::validate (const std::string& filename)
2023-09-08T21:25:55,397         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:25:56,229   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T21:25:56,230   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:25:56,230     383 |   if (&d == NULL) return 0;
2023-09-08T21:25:56,231         |   ^~
2023-09-08T21:25:56,241   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:25:56,242   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:25:56,242     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T21:25:56,243         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:25:56,255   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T21:25:56,257   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:25:56,259     413 |   if (&filename == NULL) return 0;
2023-09-08T21:25:56,260         |   ^~
2023-09-08T21:26:00,307   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:26:00,308                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:26:00,308                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:26:00,309                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2023-09-08T21:26:00,310   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:00,311      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:00,311         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:00,312   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:00,313                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:26:00,313   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:00,314     117 |     struct unary_function
2023-09-08T21:26:00,314         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:00,900   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:26:00,901                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T21:26:00,902   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:00,902     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:00,903         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:26:00,904   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:00,905     117 |     struct unary_function
2023-09-08T21:26:00,906         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:00,910   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:00,910     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:00,911         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:26:00,911   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:00,912     117 |     struct unary_function
2023-09-08T21:26:00,912         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:04,193   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:26:04,194                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:26:04,195                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:26:04,195                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2023-09-08T21:26:04,196   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:04,196      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:04,197         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:04,197   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:04,198                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:26:04,198   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:04,199     117 |     struct unary_function
2023-09-08T21:26:04,199         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:08,078   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:08,078                    from ./base//sbml/Model.h:446,
2023-09-08T21:26:08,079                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2023-09-08T21:26:08,080   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:08,080      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:08,081         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:08,082   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:08,082                    from ./base//sbml/Model.h:444:
2023-09-08T21:26:08,083   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:08,084     117 |     struct unary_function
2023-09-08T21:26:08,084         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:08,537   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:26:08,537                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:26:08,538                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2023-09-08T21:26:08,539   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:08,539     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:08,540         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:26:08,541   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:08,541     117 |     struct unary_function
2023-09-08T21:26:08,542         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:08,549   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:08,550     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:08,550         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:26:08,551   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:08,552     117 |     struct unary_function
2023-09-08T21:26:08,553         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:08,571   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:26:08,571   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:08,572     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:08,572         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:26:08,573   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:08,573     117 |     struct unary_function
2023-09-08T21:26:08,574         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:12,404   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:26:12,404                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:26:12,405                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:26:12,405                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2023-09-08T21:26:12,406                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2023-09-08T21:26:12,406   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:12,407      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:12,407         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:12,408   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:12,408                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2023-09-08T21:26:12,409   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:12,410     117 |     struct unary_function
2023-09-08T21:26:12,411         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:12,918   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:70,
2023-09-08T21:26:12,919                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T21:26:12,920                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2023-09-08T21:26:12,920   ./base//sbml/packages/fbc/sbml/FluxObjective.h:535:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:12,921     535 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:12,922         |                                          ^~~~~~~~~~~~~~
2023-09-08T21:26:12,922   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:12,923     117 |     struct unary_function
2023-09-08T21:26:12,924         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:12,930   ./base//sbml/packages/fbc/sbml/Objective.h:825:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:12,931     825 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:12,932         |                                      ^~~~~~~~~~~~~~
2023-09-08T21:26:12,932   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:12,933     117 |     struct unary_function
2023-09-08T21:26:12,934         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:12,952   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T21:26:12,953   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:514:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:12,953     514 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T21:26:12,954         |                                            ^~~~~~~~~~~~~~
2023-09-08T21:26:12,955   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:12,955     117 |     struct unary_function
2023-09-08T21:26:12,956         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:17,993   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:17,994                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:26:17,994                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:26:17,995                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:26:17,995                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:26:17,996                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2023-09-08T21:26:17,996                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2023-09-08T21:26:17,997   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:17,998      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:17,998         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:17,999   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:17,999                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:26:18,000                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:26:18,000                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:26:18,001   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:18,002     117 |     struct unary_function
2023-09-08T21:26:18,002         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:23,715   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:23,716                    from ./base//sbml/Model.h:446,
2023-09-08T21:26:23,717                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2023-09-08T21:26:23,717                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2023-09-08T21:26:23,718   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:23,719      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:23,720         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:23,720   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:23,721                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:26:23,722                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:26:23,723                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2023-09-08T21:26:23,723   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:23,724     117 |     struct unary_function
2023-09-08T21:26:23,725         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:28,639   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:28,639                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:26:28,640                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:26:28,641                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2023-09-08T21:26:28,641                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2023-09-08T21:26:28,642                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2023-09-08T21:26:28,643   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:28,644      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:28,644         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:28,645   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:28,646                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:26:28,646                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:26:28,647                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2023-09-08T21:26:28,648   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:28,648     117 |     struct unary_function
2023-09-08T21:26:28,649         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:33,382   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T21:26:33,382                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2023-09-08T21:26:33,383                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2023-09-08T21:26:33,383   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:33,384      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:33,384         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:33,385   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:33,385                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:26:33,386                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:26:33,386                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2023-09-08T21:26:33,387   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:33,388     117 |     struct unary_function
2023-09-08T21:26:33,388         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:37,776   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:37,777                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:26:37,777                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:26:37,778                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:26:37,779                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:26:37,780                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:26:37,780                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:26:37,781                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:26:37,782                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2023-09-08T21:26:37,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:37,784      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:37,784         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:37,785   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:37,786                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2023-09-08T21:26:37,786   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:37,787     117 |     struct unary_function
2023-09-08T21:26:37,788         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:44,258   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:44,258                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:26:44,259                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:26:44,260                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:26:44,260                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:26:44,261                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:26:44,262                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:26:44,262                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:26:44,263                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:26:44,264                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2023-09-08T21:26:44,265                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2023-09-08T21:26:44,266   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:44,266      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:44,267         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:44,267   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:44,268                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2023-09-08T21:26:44,268   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:44,269     117 |     struct unary_function
2023-09-08T21:26:44,269         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:50,266   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:26:50,267                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:26:50,268                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:26:50,268                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:26:50,269                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:26:50,270                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:26:50,270                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:26:50,271                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T21:26:50,271                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2023-09-08T21:26:50,272                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2023-09-08T21:26:50,273   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:50,273      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:50,274         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:50,275   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:50,276                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2023-09-08T21:26:50,276   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:50,277     117 |     struct unary_function
2023-09-08T21:26:50,278         |            ^~~~~~~~~~~~~~
2023-09-08T21:26:55,550   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2023-09-08T21:26:55,551                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2023-09-08T21:26:55,552   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:26:55,552      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:26:55,553         |                           ^~~~~~~~~~~~~~
2023-09-08T21:26:55,554   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:26:55,554                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:26:55,555                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:26:55,556                    from /usr/include/c++/12/ios:42,
2023-09-08T21:26:55,557                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:26:55,557                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:26:55,558                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2023-09-08T21:26:55,559   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:26:55,559     117 |     struct unary_function
2023-09-08T21:26:55,560         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:01,960   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:27:01,960                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:27:01,961                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:27:01,961                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:27:01,962                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:27:01,962                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:27:01,963                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2023-09-08T21:27:01,963                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2023-09-08T21:27:01,964   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:01,964      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:01,965         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:01,965   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:01,966                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:27:01,967                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:27:01,967                    from /usr/include/c++/12/ios:42,
2023-09-08T21:27:01,968                    from /usr/include/c++/12/istream:38,
2023-09-08T21:27:01,968                    from /usr/include/c++/12/sstream:38,
2023-09-08T21:27:01,969                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2023-09-08T21:27:01,969   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:01,970     117 |     struct unary_function
2023-09-08T21:27:01,970         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:07,792   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2023-09-08T21:27:07,793                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2023-09-08T21:27:07,793   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:07,794      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:07,795         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:07,796   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:07,796                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2023-09-08T21:27:07,797   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:07,798     117 |     struct unary_function
2023-09-08T21:27:07,798         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:15,867   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:27:15,867                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:27:15,868                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:27:15,869                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:27:15,869                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:27:15,870                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:27:15,871                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:27:15,872                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:27:15,872                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:27:15,873                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T21:27:15,874                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2023-09-08T21:27:15,875   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:15,875      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:15,876         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:15,877   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:15,877                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:27:15,878                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:27:15,878                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:27:15,879                    from ./base//sbml/SBase.h:145,
2023-09-08T21:27:15,879                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T21:27:15,880   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:15,880     117 |     struct unary_function
2023-09-08T21:27:15,881         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:16,344   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T21:27:16,344   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T21:27:16,345     373 |   if (&id != NULL && id.empty())
2023-09-08T21:27:16,346         |           ^
2023-09-08T21:27:16,346   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2023-09-08T21:27:16,347     371 | int GraphicalObject::setId(const std::string& id)
2023-09-08T21:27:16,348         |                            ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T21:27:16,348   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T21:27:16,349   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T21:27:16,350     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T21:27:16,350         |               ^
2023-09-08T21:27:16,351   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2023-09-08T21:27:16,352     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2023-09-08T21:27:16,353         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:27:16,995   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T21:27:16,995   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:27:16,996     373 |   if (&id != NULL && id.empty())
2023-09-08T21:27:16,997         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2023-09-08T21:27:16,998   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T21:27:16,998   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:27:16,999     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T21:27:17,000         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-08T21:27:24,935   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2023-09-08T21:27:24,935                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2023-09-08T21:27:24,936   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:24,936      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:24,937         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:24,938   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:24,938                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:27:24,939                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:27:24,940                    from /usr/include/c++/12/ios:42,
2023-09-08T21:27:24,941                    from /usr/include/c++/12/ostream:38,
2023-09-08T21:27:24,941                    from /usr/include/c++/12/iostream:39,
2023-09-08T21:27:24,941                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2023-09-08T21:27:24,942   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:24,942     117 |     struct unary_function
2023-09-08T21:27:24,943         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:25,692   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2023-09-08T21:27:25,692   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:27:25,693     453 |   if (&(name) == NULL)
2023-09-08T21:27:25,693         |               ^
2023-09-08T21:27:25,694   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2023-09-08T21:27:25,694     448 | int Layout::setName (const std::string& name)
2023-09-08T21:27:25,695         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:27:26,511   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:27:26,511     453 |   if (&(name) == NULL)
2023-09-08T21:27:26,512         |   ^~
2023-09-08T21:27:37,872   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:27:37,872                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:27:37,873                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:27:37,873                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:27:37,874                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:27:37,875                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:27:37,876                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:27:37,876                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T21:27:37,877                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2023-09-08T21:27:37,878   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:37,878      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:37,879         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:37,880   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:37,880                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2023-09-08T21:27:37,881   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:37,881     117 |     struct unary_function
2023-09-08T21:27:37,882         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:44,312   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:27:44,313                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:27:44,314                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:27:44,314                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:27:44,315                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:27:44,316                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:27:44,316                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:27:44,317                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2023-09-08T21:27:44,318   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:44,319      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:44,319         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:44,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:44,321                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T21:27:44,322                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T21:27:44,322                    from /usr/include/c++/12/ios:42,
2023-09-08T21:27:44,323                    from /usr/include/c++/12/istream:38,
2023-09-08T21:27:44,323                    from /usr/include/c++/12/sstream:38,
2023-09-08T21:27:44,324                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2023-09-08T21:27:44,324   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:44,325     117 |     struct unary_function
2023-09-08T21:27:44,325         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:50,199   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2023-09-08T21:27:50,200                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2023-09-08T21:27:50,201   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:50,201      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:50,202         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:50,202   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:50,203                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2023-09-08T21:27:50,203   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:50,204     117 |     struct unary_function
2023-09-08T21:27:50,205         |            ^~~~~~~~~~~~~~
2023-09-08T21:27:57,788   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:27:57,788                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:27:57,789                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:27:57,790                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:27:57,790                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:27:57,791                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:27:57,792                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:27:57,792                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:27:57,793                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:27:57,794                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2023-09-08T21:27:57,794                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2023-09-08T21:27:57,795   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:27:57,795      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:27:57,796         |                           ^~~~~~~~~~~~~~
2023-09-08T21:27:57,797   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:27:57,797                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2023-09-08T21:27:57,798   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:27:57,798     117 |     struct unary_function
2023-09-08T21:27:57,799         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:04,547   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:28:04,547                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:28:04,548                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:28:04,548                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:28:04,549                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:28:04,550                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:28:04,551                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:28:04,551                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:28:04,552                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:28:04,552                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2023-09-08T21:28:04,553                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2023-09-08T21:28:04,553   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:04,554      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:04,554         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:04,555   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:04,555                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2023-09-08T21:28:04,556   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:04,556     117 |     struct unary_function
2023-09-08T21:28:04,557         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:10,262   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:28:10,263                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:28:10,264                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:28:10,264                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:28:10,265                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:28:10,265                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:28:10,266                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:28:10,267                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:28:10,267                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:28:10,268                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2023-09-08T21:28:10,269                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2023-09-08T21:28:10,269   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:10,270      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:10,271         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:10,271   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:10,272                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2023-09-08T21:28:10,273   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:10,273     117 |     struct unary_function
2023-09-08T21:28:10,274         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:17,490   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:28:17,490                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:28:17,491                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:28:17,492                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:28:17,492                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:28:17,493                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:28:17,494                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:28:17,494                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:28:17,495                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:28:17,496                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2023-09-08T21:28:17,497                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2023-09-08T21:28:17,498   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:17,498      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:17,499         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:17,499   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:17,502                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2023-09-08T21:28:17,503   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:17,504     117 |     struct unary_function
2023-09-08T21:28:17,504         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:23,787   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:28:23,788                    from ./base//sbml/Model.h:446,
2023-09-08T21:28:23,788                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2023-09-08T21:28:23,789   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:23,789      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:23,790         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:23,791   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:23,791                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:28:23,792                    from ./base//sbml/xml/XMLToken.h:117,
2023-09-08T21:28:23,792                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2023-09-08T21:28:23,793   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:23,793     117 |     struct unary_function
2023-09-08T21:28:23,794         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:28,535   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:28:28,536                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:28:28,536                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:28:28,537                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:28:28,538                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:28:28,539                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T21:28:28,539                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T21:28:28,540                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T21:28:28,541                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T21:28:28,542                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T21:28:28,542                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2023-09-08T21:28:28,543   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:28,544      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:28,544         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:28,545   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:28,546                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:28:28,546                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:28:28,547                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:28:28,548                    from ./base//sbml/SBase.h:145,
2023-09-08T21:28:28,549                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T21:28:28,549   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:28,550     117 |     struct unary_function
2023-09-08T21:28:28,551         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:32,600   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:32,600                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:32,601                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:32,601                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2023-09-08T21:28:32,602                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2023-09-08T21:28:32,602   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:32,603      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:32,603         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:32,604   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:32,604                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T21:28:32,605                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2023-09-08T21:28:32,605                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2023-09-08T21:28:32,606   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:32,606     117 |     struct unary_function
2023-09-08T21:28:32,607         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:39,881   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:39,882                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:39,882                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:39,883                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2023-09-08T21:28:39,884                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2023-09-08T21:28:39,884   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:39,885      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:39,886         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:39,886   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:39,887                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T21:28:39,888                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2023-09-08T21:28:39,889                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2023-09-08T21:28:39,889   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:39,890     117 |     struct unary_function
2023-09-08T21:28:39,891         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:43,701   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:43,702                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:43,703                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:43,703                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2023-09-08T21:28:43,704   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:43,705      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:43,705         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:43,706   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:43,707                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:28:43,708   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:43,708     117 |     struct unary_function
2023-09-08T21:28:43,709         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:44,370   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:44,370      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T21:28:44,371         |                       ^~~~~~~~~~~~~~
2023-09-08T21:28:44,371   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:44,372     117 |     struct unary_function
2023-09-08T21:28:44,372         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:44,680   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:28:44,680   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T21:28:44,681     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T21:28:44,682         |                        ^
2023-09-08T21:28:44,682   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2023-09-08T21:28:44,683     417 |         virtual bool visit(const SBase &x)
2023-09-08T21:28:44,684         |                            ~~~~~~~~~~~~~^
2023-09-08T21:28:44,709   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T21:28:44,710   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T21:28:44,711     550 |   if (&d == NULL) return 0;
2023-09-08T21:28:44,711         |          ^
2023-09-08T21:28:44,712   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2023-09-08T21:28:44,713     548 | LayoutValidator::validate (const SBMLDocument& d)
2023-09-08T21:28:44,714         |                            ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T21:28:44,715   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T21:28:44,716   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:28:44,716     592 |   if (&filename == NULL) return 0;
2023-09-08T21:28:44,717         |                 ^
2023-09-08T21:28:44,718   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2023-09-08T21:28:44,719     590 | LayoutValidator::validate (const std::string& filename)
2023-09-08T21:28:44,719         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:28:45,886   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T21:28:45,887   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:28:45,888     550 |   if (&d == NULL) return 0;
2023-09-08T21:28:45,889         |   ^~
2023-09-08T21:28:45,915   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:28:45,916   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:28:45,916     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T21:28:45,917         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:28:45,938   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T21:28:45,939   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:28:45,940     592 |   if (&filename == NULL) return 0;
2023-09-08T21:28:45,941         |   ^~
2023-09-08T21:28:51,023   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:51,024                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:51,024                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:51,025                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2023-09-08T21:28:51,026   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:51,026      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:51,027         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:51,027   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:51,028                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:28:51,028   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:51,029     117 |     struct unary_function
2023-09-08T21:28:51,029         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:55,855   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:55,856                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:55,856                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:55,857                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2023-09-08T21:28:55,858   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:55,858      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:55,859         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:55,860   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:55,861                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:28:55,861   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:55,862     117 |     struct unary_function
2023-09-08T21:28:55,863         |            ^~~~~~~~~~~~~~
2023-09-08T21:28:59,710   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:28:59,711                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:28:59,712                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:28:59,712                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2023-09-08T21:28:59,713                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2023-09-08T21:28:59,714   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:28:59,714      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:28:59,715         |                           ^~~~~~~~~~~~~~
2023-09-08T21:28:59,716   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:28:59,716                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2023-09-08T21:28:59,717   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:28:59,718     117 |     struct unary_function
2023-09-08T21:28:59,718         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:05,898   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:29:05,898                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:29:05,916                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:29:05,916                    from ./base//sbml/extension/SBasePluginCreatorBase.h:48,
2023-09-08T21:29:05,918                    from ./base//sbml/extension/SBMLExtension.h:119,
2023-09-08T21:29:05,919                    from ./base//sbml/extension/SBMLExtensionRegister.h:51,
2023-09-08T21:29:05,919                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2023-09-08T21:29:05,920   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:05,920      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:05,921         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:05,922   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:05,922                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:29:05,923                    from ./base//sbml/SBMLError.h:457,
2023-09-08T21:29:05,936                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T21:29:05,937   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:05,938     117 |     struct unary_function
2023-09-08T21:29:05,939         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:11,243   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:29:11,244                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:29:11,245                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:29:11,245                    from ./base//sbml/extension/SBasePlugin.h:68,
2023-09-08T21:29:11,246                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2023-09-08T21:29:11,246                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2023-09-08T21:29:11,247   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:11,248      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:11,248         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:11,249   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:11,250                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:29:11,251                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:29:11,251                    from ./base//sbml/extension/SBasePlugin.h:66:
2023-09-08T21:29:11,252   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:11,253     117 |     struct unary_function
2023-09-08T21:29:11,254         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:16,261   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:29:16,262                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:29:16,263                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:29:16,263                    from ./base//sbml/extension/SBMLDocumentPlugin.h:54,
2023-09-08T21:29:16,264                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2023-09-08T21:29:16,265                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2023-09-08T21:29:16,265   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:16,266      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:16,267         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:16,267   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:16,268                    from ./base//sbml/xml/XMLError.h:563,
2023-09-08T21:29:16,269                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T21:29:16,269                    from ./base//sbml/extension/SBMLDocumentPlugin.h:53:
2023-09-08T21:29:16,270   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:16,271     117 |     struct unary_function
2023-09-08T21:29:16,272         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:20,320   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2023-09-08T21:29:20,321                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2023-09-08T21:29:20,322   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:20,322      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:20,323         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:20,323   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:20,324                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2023-09-08T21:29:20,324   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:20,325     117 |     struct unary_function
2023-09-08T21:29:20,325         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:20,965   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T21:29:20,965   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:20,966      81 |   if (&orig == NULL)
2023-09-08T21:29:20,966         |             ^
2023-09-08T21:29:20,967   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2023-09-08T21:29:20,968      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2023-09-08T21:29:20,968         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:20,969   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T21:29:20,969   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:20,970      99 |   if (&rhs == NULL)
2023-09-08T21:29:20,971         |            ^
2023-09-08T21:29:20,971   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2023-09-08T21:29:20,972      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2023-09-08T21:29:20,972         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:29:21,488   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T21:29:21,488   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:21,489      81 |   if (&orig == NULL)
2023-09-08T21:29:21,490         |   ^~
2023-09-08T21:29:21,490   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T21:29:21,491   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:21,492      99 |   if (&rhs == NULL)
2023-09-08T21:29:21,492         |   ^~
2023-09-08T21:29:25,434   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2023-09-08T21:29:25,435                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2023-09-08T21:29:25,436   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:25,436      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:25,437         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:25,438   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:25,438                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2023-09-08T21:29:25,439   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:25,440     117 |     struct unary_function
2023-09-08T21:29:25,441         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:26,082   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T21:29:26,083   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:26,083      88 |   if (&orig == NULL)
2023-09-08T21:29:26,084         |             ^
2023-09-08T21:29:26,084   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2023-09-08T21:29:26,085      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2023-09-08T21:29:26,085         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:26,086   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T21:29:26,087   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:26,087     114 |   if (&rhs == NULL)
2023-09-08T21:29:26,088         |            ^
2023-09-08T21:29:26,088   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2023-09-08T21:29:26,089     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2023-09-08T21:29:26,089         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:29:26,112   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T21:29:26,112   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:26,113     651 |   if (&orig == NULL)
2023-09-08T21:29:26,113         |             ^
2023-09-08T21:29:26,114   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2023-09-08T21:29:26,115     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2023-09-08T21:29:26,115         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:26,116   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T21:29:26,116   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:26,117     673 |   if (&rhs == NULL)
2023-09-08T21:29:26,118         |            ^
2023-09-08T21:29:26,118   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2023-09-08T21:29:26,119     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2023-09-08T21:29:26,120         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:29:26,717   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T21:29:26,718   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:26,719      88 |   if (&orig == NULL)
2023-09-08T21:29:26,720         |   ^~
2023-09-08T21:29:26,720   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T21:29:26,721   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:26,722     114 |   if (&rhs == NULL)
2023-09-08T21:29:26,722         |   ^~
2023-09-08T21:29:26,723   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T21:29:26,724   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:26,724     673 |   if (&rhs == NULL)
2023-09-08T21:29:26,725         |   ^~
2023-09-08T21:29:26,734   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T21:29:26,735   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:26,735     651 |   if (&orig == NULL)
2023-09-08T21:29:26,736         |   ^~
2023-09-08T21:29:32,222   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2023-09-08T21:29:32,222                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2023-09-08T21:29:32,223   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:32,223      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:32,224         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:32,224   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:32,225                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2023-09-08T21:29:32,225   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:32,226     117 |     struct unary_function
2023-09-08T21:29:32,227         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:32,886   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T21:29:32,886   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:32,887      91 |   if (&orig == NULL)
2023-09-08T21:29:32,888         |             ^
2023-09-08T21:29:32,888   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2023-09-08T21:29:32,889      88 | Input::Input (const Input& orig)
2023-09-08T21:29:32,890         |               ~~~~~~~~~~~~~^~~~
2023-09-08T21:29:32,891   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T21:29:32,891   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:32,892     114 |   if (&rhs == NULL)
2023-09-08T21:29:32,893         |            ^
2023-09-08T21:29:32,894   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2023-09-08T21:29:32,894     112 | Input::operator=(const Input& rhs)
2023-09-08T21:29:32,895         |                  ~~~~~~~~~~~~~^~~
2023-09-08T21:29:32,896   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T21:29:32,897   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T21:29:32,898     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T21:29:32,898         |                             ^
2023-09-08T21:29:32,899   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2023-09-08T21:29:32,900     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T21:29:32,900         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:29:32,901   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T21:29:32,902   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:29:32,903     328 |   if (&(name) == NULL)
2023-09-08T21:29:32,903         |               ^
2023-09-08T21:29:32,904   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2023-09-08T21:29:32,905     326 | Input::setName(const std::string& name)
2023-09-08T21:29:32,906         |                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:32,940   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2023-09-08T21:29:32,941   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:32,942     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T21:29:32,942         |                             ^~~~~~~~~~~~~~
2023-09-08T21:29:32,943   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:32,944     117 |     struct unary_function
2023-09-08T21:29:32,944         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:33,548   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T21:29:33,549   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:33,549     328 |   if (&(name) == NULL)
2023-09-08T21:29:33,550         |   ^~
2023-09-08T21:29:33,566   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T21:29:33,567   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:33,568      91 |   if (&orig == NULL)
2023-09-08T21:29:33,568         |   ^~
2023-09-08T21:29:33,569   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T21:29:33,569   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:33,570     114 |   if (&rhs == NULL)
2023-09-08T21:29:33,571         |   ^~
2023-09-08T21:29:33,571   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T21:29:33,572   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:33,572     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T21:29:33,573         |   ^~
2023-09-08T21:29:40,423   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2023-09-08T21:29:40,424                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2023-09-08T21:29:40,425   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:40,426      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:40,427         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:40,427   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:40,428                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2023-09-08T21:29:40,429   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:40,429     117 |     struct unary_function
2023-09-08T21:29:40,430         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:41,076   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T21:29:41,077   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:41,078      89 |   if (&orig == NULL)
2023-09-08T21:29:41,078         |             ^
2023-09-08T21:29:41,079   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2023-09-08T21:29:41,080      86 | Output::Output (const Output& orig)
2023-09-08T21:29:41,081         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:41,081   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T21:29:41,082   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:41,083     111 |   if (&rhs == NULL)
2023-09-08T21:29:41,084         |            ^
2023-09-08T21:29:41,085   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2023-09-08T21:29:41,085     109 | Output::operator=(const Output& rhs)
2023-09-08T21:29:41,086         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T21:29:41,086   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T21:29:41,087   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T21:29:41,088     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T21:29:41,088         |                             ^
2023-09-08T21:29:41,089   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2023-09-08T21:29:41,089     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T21:29:41,090         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T21:29:41,091   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T21:29:41,091   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:29:41,092     304 |   if (&(name) == NULL)
2023-09-08T21:29:41,093         |               ^
2023-09-08T21:29:41,093   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2023-09-08T21:29:41,094     302 | Output::setName(const std::string& name)
2023-09-08T21:29:41,095         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:41,124   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2023-09-08T21:29:41,125   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:41,126     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T21:29:41,127         |                             ^~~~~~~~~~~~~~
2023-09-08T21:29:41,128   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:41,128     117 |     struct unary_function
2023-09-08T21:29:41,129         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:41,723   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T21:29:41,724   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:41,724     304 |   if (&(name) == NULL)
2023-09-08T21:29:41,725         |   ^~
2023-09-08T21:29:41,740   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T21:29:41,741   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:41,742      89 |   if (&orig == NULL)
2023-09-08T21:29:41,743         |   ^~
2023-09-08T21:29:41,743   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T21:29:41,744   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:41,745     111 |   if (&rhs == NULL)
2023-09-08T21:29:41,745         |   ^~
2023-09-08T21:29:41,746   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T21:29:41,747   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:41,748     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T21:29:41,749         |   ^~
2023-09-08T21:29:48,306   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2023-09-08T21:29:48,307                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2023-09-08T21:29:48,307   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:48,308      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:48,308         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:48,309   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:48,309                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2023-09-08T21:29:48,310   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:48,310     117 |     struct unary_function
2023-09-08T21:29:48,311         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:48,968   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T21:29:48,969   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:48,969      95 |   if (&orig == NULL)
2023-09-08T21:29:48,970         |             ^
2023-09-08T21:29:48,970   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2023-09-08T21:29:48,971      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2023-09-08T21:29:48,971         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:48,973   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T21:29:48,974   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:48,975     120 |   if (&rhs == NULL)
2023-09-08T21:29:48,975         |            ^
2023-09-08T21:29:48,976   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2023-09-08T21:29:48,977     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2023-09-08T21:29:48,978         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:29:48,981   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T21:29:48,982   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2023-09-08T21:29:48,982     295 |   if (&(compartment) == NULL)
2023-09-08T21:29:48,983         |                      ^
2023-09-08T21:29:48,984   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2023-09-08T21:29:48,984     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2023-09-08T21:29:48,985         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T21:29:48,986   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2023-09-08T21:29:48,986   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:29:48,987     329 |   if (&(name) == NULL)
2023-09-08T21:29:48,988         |               ^
2023-09-08T21:29:48,988   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2023-09-08T21:29:48,989     327 | QualitativeSpecies::setName(const std::string& name)
2023-09-08T21:29:48,990         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:49,615   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:49,615     329 |   if (&(name) == NULL)
2023-09-08T21:29:49,616         |   ^~
2023-09-08T21:29:49,631   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T21:29:49,632   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:49,633      95 |   if (&orig == NULL)
2023-09-08T21:29:49,633         |   ^~
2023-09-08T21:29:49,634   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T21:29:49,634   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:49,635     120 |   if (&rhs == NULL)
2023-09-08T21:29:49,636         |   ^~
2023-09-08T21:29:49,636   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T21:29:49,637   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:49,637     295 |   if (&(compartment) == NULL)
2023-09-08T21:29:49,638         |   ^~
2023-09-08T21:29:56,292   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2023-09-08T21:29:56,293                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2023-09-08T21:29:56,293   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:29:56,294      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:29:56,295         |                           ^~~~~~~~~~~~~~
2023-09-08T21:29:56,295   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:29:56,296                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2023-09-08T21:29:56,296   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:29:56,297     117 |     struct unary_function
2023-09-08T21:29:56,298         |            ^~~~~~~~~~~~~~
2023-09-08T21:29:56,968   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T21:29:56,968   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:29:56,969      94 |   if (&orig == NULL)
2023-09-08T21:29:56,970         |             ^
2023-09-08T21:29:56,970   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2023-09-08T21:29:56,971      91 | Transition::Transition (const Transition& orig)
2023-09-08T21:29:56,972         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:56,972   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T21:29:56,973   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:29:56,974     118 |   if (&rhs == NULL)
2023-09-08T21:29:56,975         |            ^
2023-09-08T21:29:56,975   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2023-09-08T21:29:56,976     116 | Transition::operator=(const Transition& rhs)
2023-09-08T21:29:56,977         |                       ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:29:56,983   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2023-09-08T21:29:56,984   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:29:56,984     257 |   if (&(name) == NULL)
2023-09-08T21:29:56,985         |               ^
2023-09-08T21:29:56,985   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2023-09-08T21:29:56,986     255 | Transition::setName(const std::string& name)
2023-09-08T21:29:56,986         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:29:57,636   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:57,636     257 |   if (&(name) == NULL)
2023-09-08T21:29:57,637         |   ^~
2023-09-08T21:29:57,654   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T21:29:57,654   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:57,655     118 |   if (&rhs == NULL)
2023-09-08T21:29:57,656         |   ^~
2023-09-08T21:29:57,670   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T21:29:57,671   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:29:57,671      94 |   if (&orig == NULL)
2023-09-08T21:29:57,672         |   ^~
2023-09-08T21:30:04,300   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:04,300                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:04,301                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:04,301                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2023-09-08T21:30:04,302                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2023-09-08T21:30:04,303   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:04,304      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:04,304         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:04,305   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:04,306                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T21:30:04,307                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2023-09-08T21:30:04,307                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2023-09-08T21:30:04,308   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:04,309     117 |     struct unary_function
2023-09-08T21:30:04,309         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:09,691   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:09,692                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:09,692                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:09,693                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2023-09-08T21:30:09,694                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2023-09-08T21:30:09,694   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:09,695      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:09,696         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:09,696   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:09,697                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T21:30:09,698                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2023-09-08T21:30:09,698                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2023-09-08T21:30:09,699   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:09,699     117 |     struct unary_function
2023-09-08T21:30:09,700         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:13,467   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:13,468                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:13,469                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:13,469                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2023-09-08T21:30:13,470                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2023-09-08T21:30:13,470   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:13,471      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:13,471         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:13,472   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:13,473                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T21:30:13,473                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2023-09-08T21:30:13,474                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2023-09-08T21:30:13,475   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:13,475     117 |     struct unary_function
2023-09-08T21:30:13,476         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:17,455   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:17,455                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:17,456                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:17,456                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2023-09-08T21:30:17,457   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:17,458      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:17,459         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:17,459   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:17,460                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:30:17,460   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:17,461     117 |     struct unary_function
2023-09-08T21:30:17,462         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:18,085   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:18,086      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T21:30:18,087         |                       ^~~~~~~~~~~~~~
2023-09-08T21:30:18,088   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:18,088     117 |     struct unary_function
2023-09-08T21:30:18,089         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:18,282   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:30:18,283   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T21:30:18,284     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T21:30:18,285         |           ^
2023-09-08T21:30:18,285   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2023-09-08T21:30:18,286     313 |   virtual bool visit (const SBase &x)
2023-09-08T21:30:18,286         |                       ~~~~~~~~~~~~~^
2023-09-08T21:30:18,304   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T21:30:18,305   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T21:30:18,305     419 |   if (&d == NULL) return 0;
2023-09-08T21:30:18,306         |          ^
2023-09-08T21:30:18,306   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2023-09-08T21:30:18,307     417 | QualValidator::validate (const SBMLDocument& d)
2023-09-08T21:30:18,307         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T21:30:18,309   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T21:30:18,310   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:30:18,310     449 |   if (&filename == NULL) return 0;
2023-09-08T21:30:18,311         |                 ^
2023-09-08T21:30:18,311   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2023-09-08T21:30:18,312     447 | QualValidator::validate (const std::string& filename)
2023-09-08T21:30:18,312         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:30:19,219   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T21:30:19,219   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:19,220     419 |   if (&d == NULL) return 0;
2023-09-08T21:30:19,221         |   ^~
2023-09-08T21:30:19,236   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T21:30:19,237   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:19,237     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T21:30:19,238         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:30:19,253   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T21:30:19,253   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:19,254     449 |   if (&filename == NULL) return 0;
2023-09-08T21:30:19,255         |   ^~
2023-09-08T21:30:23,633   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:30:23,633                    from ./base//sbml/Model.h:446,
2023-09-08T21:30:23,634                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2023-09-08T21:30:23,635   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:23,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:23,636         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:23,637   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:23,638                    from ./base//sbml/Model.h:444:
2023-09-08T21:30:23,638   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:23,639     117 |     struct unary_function
2023-09-08T21:30:23,640         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:27,984   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:27,985                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:27,985                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:27,986                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2023-09-08T21:30:27,986                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2023-09-08T21:30:27,987   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:27,988      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:27,988         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:27,989   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:27,989                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2023-09-08T21:30:27,990   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:27,990     117 |     struct unary_function
2023-09-08T21:30:27,991         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:28,613   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:30:28,614   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:30:28,615      97 |   if (&(node) == NULL)
2023-09-08T21:30:28,615         |               ^
2023-09-08T21:30:28,616   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2023-09-08T21:30:28,616      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:30:28,617         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:30:29,120   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:29,121      97 |   if (&(node) == NULL)
2023-09-08T21:30:29,122         |   ^~
2023-09-08T21:30:32,270   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:32,271                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:32,271                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:32,272                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2023-09-08T21:30:32,273   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:32,273      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:32,274         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:32,275   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:32,275                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:30:32,276   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:32,277     117 |     struct unary_function
2023-09-08T21:30:32,277         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:36,203   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:36,204                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:36,205                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:36,205                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2023-09-08T21:30:36,206   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:36,207      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:36,208         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:36,208   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:36,209                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:30:36,209   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:36,210     117 |     struct unary_function
2023-09-08T21:30:36,210         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:39,943   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:39,943                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:39,944                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:39,945                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2023-09-08T21:30:39,945   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:39,946      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:39,946         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:39,947   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:39,948                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:30:39,948   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:39,949     117 |     struct unary_function
2023-09-08T21:30:39,949         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:43,951   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:30:43,952                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:30:43,952                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:30:43,953                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2023-09-08T21:30:43,954                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2023-09-08T21:30:43,954   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:43,955      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:43,956         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:43,957   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:43,957                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2023-09-08T21:30:43,958   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:43,958     117 |     struct unary_function
2023-09-08T21:30:43,959         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:49,441   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:30:49,442                    from ./base//sbml/Model.h:446,
2023-09-08T21:30:49,443                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2023-09-08T21:30:49,443   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:49,444      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:49,445         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:49,445   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:49,446                    from ./base//sbml/Model.h:444:
2023-09-08T21:30:49,447   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:49,448     117 |     struct unary_function
2023-09-08T21:30:49,449         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:53,619   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:30:53,619                    from ./base//sbml/Model.h:446,
2023-09-08T21:30:53,620                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2023-09-08T21:30:53,620   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:53,621      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:53,621         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:53,622   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:53,623                    from ./base//sbml/Model.h:444:
2023-09-08T21:30:53,623   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:53,624     117 |     struct unary_function
2023-09-08T21:30:53,624         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:57,780   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:30:57,781                    from ./base//sbml/Model.h:446,
2023-09-08T21:30:57,781                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2023-09-08T21:30:57,782   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:30:57,783      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:30:57,783         |                           ^~~~~~~~~~~~~~
2023-09-08T21:30:57,784   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:30:57,784                    from ./base//sbml/Model.h:444:
2023-09-08T21:30:57,785   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:30:57,786     117 |     struct unary_function
2023-09-08T21:30:57,786         |            ^~~~~~~~~~~~~~
2023-09-08T21:30:58,170   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T21:30:58,171   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:30:58,172      74 |   if (&orig == NULL)
2023-09-08T21:30:58,172         |             ^
2023-09-08T21:30:58,173   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2023-09-08T21:30:58,174      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2023-09-08T21:30:58,175         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:30:58,176   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T21:30:58,176   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:30:58,177     138 |   if (&rhs == NULL)
2023-09-08T21:30:58,178         |            ^
2023-09-08T21:30:58,178   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2023-09-08T21:30:58,179     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2023-09-08T21:30:58,180         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:30:58,660   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T21:30:58,661   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:58,662      74 |   if (&orig == NULL)
2023-09-08T21:30:58,662         |   ^~
2023-09-08T21:30:58,663   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T21:30:58,664   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:30:58,665     138 |   if (&rhs == NULL)
2023-09-08T21:30:58,666         |   ^~
2023-09-08T21:31:01,741   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:31:01,742                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:31:01,742                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2023-09-08T21:31:01,743   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:01,743      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:01,744         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:01,744   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:01,745                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:31:01,745   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:01,746     117 |     struct unary_function
2023-09-08T21:31:01,747         |            ^~~~~~~~~~~~~~
2023-09-08T21:31:13,616   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T21:31:13,617   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2023-09-08T21:31:13,617      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T21:31:13,618         |                       ^
2023-09-08T21:31:13,618   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2023-09-08T21:31:13,619      48 | IdList::IdList(const std::string& commaSeparated)
2023-09-08T21:31:13,619         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T21:31:13,922   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T21:31:13,923   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:31:13,923      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T21:31:13,924         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T21:31:24,446   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:31:24,447                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:31:24,448                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2023-09-08T21:31:24,448   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:24,449      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:24,450         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:24,451   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:24,451                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:31:24,452   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:24,452     117 |     struct unary_function
2023-09-08T21:31:24,453         |            ^~~~~~~~~~~~~~
2023-09-08T21:31:39,533   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:31:39,534                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:31:39,534                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2023-09-08T21:31:39,535   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:39,536      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:39,536         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:39,537   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:39,538                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:31:39,539   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:39,539     117 |     struct unary_function
2023-09-08T21:31:39,540         |            ^~~~~~~~~~~~~~
2023-09-08T21:31:44,159   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:31:44,160                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:31:44,160                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2023-09-08T21:31:44,161   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:44,161      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:44,162         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:44,162   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:44,163                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:31:44,163   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:44,164     117 |     struct unary_function
2023-09-08T21:31:44,164         |            ^~~~~~~~~~~~~~
2023-09-08T21:31:51,338   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:31:51,338                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:31:51,339                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2023-09-08T21:31:51,340                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2023-09-08T21:31:51,340   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:51,341      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:51,342         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:51,342   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:51,343                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:31:51,344                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2023-09-08T21:31:51,345                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2023-09-08T21:31:51,345   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:51,346     117 |     struct unary_function
2023-09-08T21:31:51,347         |            ^~~~~~~~~~~~~~
2023-09-08T21:31:56,984   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:31:56,984                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:31:56,985                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2023-09-08T21:31:56,986                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2023-09-08T21:31:56,986   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:31:56,987      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:31:56,988         |                           ^~~~~~~~~~~~~~
2023-09-08T21:31:56,988   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:31:56,989                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:31:56,989                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2023-09-08T21:31:56,990                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2023-09-08T21:31:56,991   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:31:56,991     117 |     struct unary_function
2023-09-08T21:31:56,992         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:02,992   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:32:02,992                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:32:02,993                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2023-09-08T21:32:02,994                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2023-09-08T21:32:02,995   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:02,995      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:02,996         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:02,996   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:02,997                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:32:02,997                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2023-09-08T21:32:02,998                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2023-09-08T21:32:02,998   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:02,999     117 |     struct unary_function
2023-09-08T21:32:02,999         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:08,697   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:32:08,698                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:32:08,699                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2023-09-08T21:32:08,699                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2023-09-08T21:32:08,700   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:08,700      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:08,701         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:08,701   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:08,702                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:32:08,703                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2023-09-08T21:32:08,703                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2023-09-08T21:32:08,704   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:08,704     117 |     struct unary_function
2023-09-08T21:32:08,705         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:14,137   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:32:14,138                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:32:14,139                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2023-09-08T21:32:14,140                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2023-09-08T21:32:14,140   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:14,141      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:14,142         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:14,142   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:14,143                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:32:14,144                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2023-09-08T21:32:14,144                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2023-09-08T21:32:14,145   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:14,145     117 |     struct unary_function
2023-09-08T21:32:14,146         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:19,521   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:19,521                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:19,522                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:32:19,523                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2023-09-08T21:32:19,524                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2023-09-08T21:32:19,525   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:19,525      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:19,526         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:19,526   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:19,527                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T21:32:19,527                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2023-09-08T21:32:19,528                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2023-09-08T21:32:19,528   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:19,529     117 |     struct unary_function
2023-09-08T21:32:19,529         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:23,633   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:23,633                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:23,634                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2023-09-08T21:32:23,634   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:23,635      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:23,635         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:23,636   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:23,636                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:32:23,637   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:23,637     117 |     struct unary_function
2023-09-08T21:32:23,638         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:27,433   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:27,434                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:27,435                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2023-09-08T21:32:27,435   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:27,436      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:27,436         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:27,437   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:27,438                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:32:27,438   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:27,439     117 |     struct unary_function
2023-09-08T21:32:27,439         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:31,665   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:31,666                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:31,667                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2023-09-08T21:32:31,667   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:31,668      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:31,669         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:31,669   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:31,670                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:32:31,671   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:31,672     117 |     struct unary_function
2023-09-08T21:32:31,672         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:35,722   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:32:35,722                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:32:35,723                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:32:35,723                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:32:35,724                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T21:32:35,724                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2023-09-08T21:32:35,725                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2023-09-08T21:32:35,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:35,726      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:35,726         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:35,727   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:35,727                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:32:35,728                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:32:35,728                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2023-09-08T21:32:35,729   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:35,729     117 |     struct unary_function
2023-09-08T21:32:35,730         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:41,819   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:32:41,819                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:32:41,820                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:32:41,820                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:32:41,821                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T21:32:41,822                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T21:32:41,822                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2023-09-08T21:32:41,823   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:41,824      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:41,825         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:41,825   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:41,826                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:32:41,827                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:32:41,828                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2023-09-08T21:32:41,828   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:41,829     117 |     struct unary_function
2023-09-08T21:32:41,830         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:46,443   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:32:46,444                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T21:32:46,444                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T21:32:46,445                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T21:32:46,446                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T21:32:46,446                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2023-09-08T21:32:46,447   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:46,448      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:46,448         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:46,449   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:46,450                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:32:46,450                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:32:46,451                    from ./base//sbml/validator/SBMLValidator.h:73:
2023-09-08T21:32:46,452   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:46,453     117 |     struct unary_function
2023-09-08T21:32:46,453         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:46,767   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T21:32:46,768   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:32:46,768      59 |   if (&orig == NULL)
2023-09-08T21:32:46,769         |             ^
2023-09-08T21:32:46,769   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2023-09-08T21:32:46,770      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2023-09-08T21:32:46,771         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:32:46,771   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T21:32:46,772   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:32:46,772      87 |   if (&rhs == NULL)
2023-09-08T21:32:46,773         |            ^
2023-09-08T21:32:46,774   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2023-09-08T21:32:46,774      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2023-09-08T21:32:46,775         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:32:46,776   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T21:32:46,776   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T21:32:46,777     168 |   if (&msg == NULL) return;
2023-09-08T21:32:46,777         |            ^
2023-09-08T21:32:46,778   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2023-09-08T21:32:46,779     166 | SBMLValidator::logFailure (const SBMLError& msg)
2023-09-08T21:32:46,780         |                            ~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:32:46,780   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T21:32:46,781   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:32:46,782     182 |   if (&filename == NULL) return 0;
2023-09-08T21:32:46,782         |                 ^
2023-09-08T21:32:46,783   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2023-09-08T21:32:46,784     180 | SBMLValidator::validate (const std::string& filename)
2023-09-08T21:32:46,784         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:32:47,287   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T21:32:47,288   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:32:47,289      87 |   if (&rhs == NULL)
2023-09-08T21:32:47,289         |   ^~
2023-09-08T21:32:47,290   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T21:32:47,291   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:32:47,291      59 |   if (&orig == NULL)
2023-09-08T21:32:47,292         |   ^~
2023-09-08T21:32:47,293   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T21:32:47,294   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:32:47,294     168 |   if (&msg == NULL) return;
2023-09-08T21:32:47,295         |   ^~
2023-09-08T21:32:47,296   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T21:32:47,297   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:32:47,297     182 |   if (&filename == NULL) return 0;
2023-09-08T21:32:47,298         |   ^~
2023-09-08T21:32:50,433   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:50,434                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:50,434                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2023-09-08T21:32:50,435   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:50,435      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:50,436         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:50,437   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:50,437                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:32:50,438   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:50,438     117 |     struct unary_function
2023-09-08T21:32:50,439         |            ^~~~~~~~~~~~~~
2023-09-08T21:32:57,539   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:32:57,539                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:32:57,540                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2023-09-08T21:32:57,540   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:32:57,541      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:32:57,542         |                           ^~~~~~~~~~~~~~
2023-09-08T21:32:57,542   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:32:57,543                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T21:32:57,543   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:32:57,544     117 |     struct unary_function
2023-09-08T21:32:57,545         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:06,855   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:33:06,855                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:33:06,856                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:33:06,856                    from ./base/sbml/validator/VConstraint.cpp:33:
2023-09-08T21:33:06,857   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:06,858      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:06,858         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:06,859   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:06,859                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:33:06,860   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:06,861     117 |     struct unary_function
2023-09-08T21:33:06,861         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:07,306   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2023-09-08T21:33:07,306   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2023-09-08T21:33:07,307      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T21:33:07,308         |               ^
2023-09-08T21:33:07,309   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2023-09-08T21:33:07,310      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T21:33:07,310         |                          ~~~~~~~~~~~~~^~~~~~
2023-09-08T21:33:07,311   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T21:33:07,312      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T21:33:07,312         |                                   ^
2023-09-08T21:33:07,313   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2023-09-08T21:33:07,313      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T21:33:07,314         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:33:07,765   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:07,765      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T21:33:07,766         |               ^
2023-09-08T21:33:07,767   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:07,767      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T21:33:07,768         |                                   ^
2023-09-08T21:33:10,717   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2023-09-08T21:33:10,717                    from ./base/sbml/validator/Validator.cpp:39:
2023-09-08T21:33:10,718   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:10,718      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:10,719         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:10,720   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:33:10,720                    from ./base/sbml/validator/Validator.cpp:34:
2023-09-08T21:33:10,721   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:10,722     117 |     struct unary_function
2023-09-08T21:33:10,722         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:11,308   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:11,309      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T21:33:11,310         |                       ^~~~~~~~~~~~~~
2023-09-08T21:33:11,310   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:11,311     117 |     struct unary_function
2023-09-08T21:33:11,312         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:11,775   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T21:33:11,776   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T21:33:11,777     709 |   if (&msg == NULL) return;
2023-09-08T21:33:11,777         |            ^
2023-09-08T21:33:11,778   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2023-09-08T21:33:11,779     707 | Validator::logFailure (const SBMLError& msg)
2023-09-08T21:33:11,780         |                        ~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:33:11,780   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T21:33:11,781   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T21:33:11,782     754 |   if (&d == NULL) return 0;
2023-09-08T21:33:11,783         |          ^
2023-09-08T21:33:11,783   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2023-09-08T21:33:11,784     752 | Validator::validate (const SBMLDocument& d)
2023-09-08T21:33:11,785         |                      ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T21:33:11,786   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T21:33:11,786   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:33:11,787     815 |   if (&filename == NULL) return 0;
2023-09-08T21:33:11,787         |                 ^
2023-09-08T21:33:11,788   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2023-09-08T21:33:11,788     813 | Validator::validate (const std::string& filename)
2023-09-08T21:33:11,789         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:33:13,283   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T21:33:13,284   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:13,285     709 |   if (&msg == NULL) return;
2023-09-08T21:33:13,285         |   ^~
2023-09-08T21:33:13,306   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T21:33:13,306   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:13,307     754 |   if (&d == NULL) return 0;
2023-09-08T21:33:13,308         |   ^~
2023-09-08T21:33:13,309   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T21:33:13,309   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:13,310     815 |   if (&filename == NULL) return 0;
2023-09-08T21:33:13,311         |   ^~
2023-09-08T21:33:20,002   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:20,002                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:20,003                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2023-09-08T21:33:20,004   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:20,004      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:20,005         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:20,006   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:20,006                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:20,007   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:20,007     117 |     struct unary_function
2023-09-08T21:33:20,008         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:24,429   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:24,429                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:24,430                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2023-09-08T21:33:24,431   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:24,432      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:24,432         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:24,433   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:24,434                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:24,435   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:24,436     117 |     struct unary_function
2023-09-08T21:33:24,437         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:28,574   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:28,575                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:28,575                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2023-09-08T21:33:28,576   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:28,576      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:28,577         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:28,577   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:28,578                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:28,578   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:28,579     117 |     struct unary_function
2023-09-08T21:33:28,579         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:36,696   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:36,696                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:36,697                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2023-09-08T21:33:36,697   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:36,698      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:36,698         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:36,699   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:36,699                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:36,700   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:36,701     117 |     struct unary_function
2023-09-08T21:33:36,701         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:41,330   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:41,331                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:41,332                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2023-09-08T21:33:41,332   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:41,333      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:41,334         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:41,334   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:41,335                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:41,336   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:41,337     117 |     struct unary_function
2023-09-08T21:33:41,337         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:41,651   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:33:41,652   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:33:41,652     104 |   if (&(node) == NULL)
2023-09-08T21:33:41,653         |               ^
2023-09-08T21:33:41,654   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2023-09-08T21:33:41,655     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:33:41,655         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:33:42,151   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:33:42,152     104 |   if (&(node) == NULL)
2023-09-08T21:33:42,152         |   ^~
2023-09-08T21:33:45,498   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:45,499                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:45,500                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2023-09-08T21:33:45,500   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:45,501      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:45,501         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:45,502   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:45,503                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:45,503   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:45,504     117 |     struct unary_function
2023-09-08T21:33:45,504         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:45,845   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:45,846     119 | struct CycleContains : public unary_function<IdList, bool>
2023-09-08T21:33:45,846         |                               ^~~~~~~~~~~~~~
2023-09-08T21:33:45,847   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:45,847     117 |     struct unary_function
2023-09-08T21:33:45,848         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:50,723   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:33:50,725                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:33:50,726                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:33:50,727                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2023-09-08T21:33:50,727   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:50,728      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:50,729         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:50,729   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:50,730                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:33:50,731                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:33:50,732                    from ./base//sbml/SBO.h:196,
2023-09-08T21:33:50,732                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2023-09-08T21:33:50,733   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:50,734     117 |     struct unary_function
2023-09-08T21:33:50,735         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:54,875   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:54,875                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:54,876                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2023-09-08T21:33:54,877   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:54,877      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:54,878         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:54,879   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:54,879                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:54,880   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:54,881     117 |     struct unary_function
2023-09-08T21:33:54,881         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:59,367   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:33:59,368                    from ./base//sbml/Model.h:446,
2023-09-08T21:33:59,369                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2023-09-08T21:33:59,370   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:33:59,371      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:33:59,371         |                           ^~~~~~~~~~~~~~
2023-09-08T21:33:59,372   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:33:59,373                    from ./base//sbml/Model.h:444:
2023-09-08T21:33:59,373   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:33:59,374     117 |     struct unary_function
2023-09-08T21:33:59,374         |            ^~~~~~~~~~~~~~
2023-09-08T21:33:59,688   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:33:59,689   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:33:59,689     101 |   if (&(node) == NULL)
2023-09-08T21:33:59,690         |               ^
2023-09-08T21:33:59,690   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2023-09-08T21:33:59,691      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:33:59,692         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:34:00,174   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:34:00,175     101 |   if (&(node) == NULL)
2023-09-08T21:34:00,175         |   ^~
2023-09-08T21:34:03,461   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:03,462                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:03,462                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2023-09-08T21:34:03,463   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:03,464      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:03,465         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:03,466   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:03,466                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:03,467   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:03,468     117 |     struct unary_function
2023-09-08T21:34:03,469         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:07,775   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:07,775                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:07,776                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2023-09-08T21:34:07,776   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:07,777      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:07,777         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:07,778   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:07,779                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:07,779   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:07,780     117 |     struct unary_function
2023-09-08T21:34:07,781         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:08,099   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:34:08,099   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:34:08,100     103 |   if (&(node) == NULL)
2023-09-08T21:34:08,101         |               ^
2023-09-08T21:34:08,102   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2023-09-08T21:34:08,102     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:34:08,103         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:34:08,595   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:34:08,596     103 |   if (&(node) == NULL)
2023-09-08T21:34:08,596         |   ^~
2023-09-08T21:34:11,888   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:11,889                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:11,889                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2023-09-08T21:34:11,890   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:11,891      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:11,891         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:11,892   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:11,892                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:11,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:11,893     117 |     struct unary_function
2023-09-08T21:34:11,894         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:15,863   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:15,863                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:15,864                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2023-09-08T21:34:15,865   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:15,866      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:15,867         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:15,868   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:15,868                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:15,869   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:15,870     117 |     struct unary_function
2023-09-08T21:34:15,871         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:16,184   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:34:16,185   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:34:16,186     104 |   if (&(node) == NULL)
2023-09-08T21:34:16,187         |               ^
2023-09-08T21:34:16,187   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T21:34:16,188     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:34:16,189         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:34:16,682   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:34:16,683     104 |   if (&(node) == NULL)
2023-09-08T21:34:16,684         |   ^~
2023-09-08T21:34:20,046   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:20,047                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:20,048                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2023-09-08T21:34:20,049   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:20,050      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:20,050         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:20,051   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:20,052                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:20,053   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:20,053     117 |     struct unary_function
2023-09-08T21:34:20,054         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:24,162   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:34:24,163                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:34:24,163                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:34:24,164                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T21:34:24,164                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2023-09-08T21:34:24,165   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:24,166      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:24,166         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:24,167   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:24,167                    from ./base/sbml/validator/constraints/IdBase.h:42:
2023-09-08T21:34:24,168   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:24,169     117 |     struct unary_function
2023-09-08T21:34:24,169         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:28,132   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:34:28,133                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:34:28,133                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:34:28,134                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2023-09-08T21:34:28,135   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:28,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:28,136         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:28,137   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:28,138                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:34:28,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:28,139     117 |     struct unary_function
2023-09-08T21:34:28,140         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:32,109   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:34:32,110                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:34:32,111                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:34:32,111                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2023-09-08T21:34:32,112   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:32,113      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:32,113         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:32,114   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:32,115                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:34:32,116                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:34:32,117                    from ./base//sbml/SBO.h:196,
2023-09-08T21:34:32,118                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2023-09-08T21:34:32,118   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:32,119     117 |     struct unary_function
2023-09-08T21:34:32,119         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:35,908   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:35,908                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:35,908                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2023-09-08T21:34:35,909   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:35,909      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:35,910         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:35,910   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:35,911                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:35,912   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:35,912     117 |     struct unary_function
2023-09-08T21:34:35,913         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:40,626   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:34:40,627                    from ./base//sbml/Model.h:446,
2023-09-08T21:34:40,627                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2023-09-08T21:34:40,628   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:40,629      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:40,629         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:40,630   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:40,631                    from ./base//sbml/Model.h:444:
2023-09-08T21:34:40,631   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:40,632     117 |     struct unary_function
2023-09-08T21:34:40,633         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:44,718   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:34:44,718                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:34:44,719                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2023-09-08T21:34:44,720   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:44,721      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:44,721         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:44,722   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:44,723                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:34:44,723                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:34:44,724                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:34:44,725                    from ./base//sbml/SBase.h:145,
2023-09-08T21:34:44,725                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2023-09-08T21:34:44,726   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:44,727     117 |     struct unary_function
2023-09-08T21:34:44,727         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:48,492   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:34:48,493                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:34:48,494                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2023-09-08T21:34:48,495   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:48,496      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:48,497         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:48,497   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:48,498                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:34:48,498                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:34:48,499                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:34:48,499                    from ./base//sbml/SBase.h:145,
2023-09-08T21:34:48,500                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2023-09-08T21:34:48,500   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:48,501     117 |     struct unary_function
2023-09-08T21:34:48,501         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:52,279   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:34:52,280                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:34:52,281                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2023-09-08T21:34:52,281   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:52,282      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:52,282         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:52,283   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:52,283                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:34:52,284                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:34:52,285                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:34:52,285                    from ./base//sbml/SBase.h:145,
2023-09-08T21:34:52,286                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2023-09-08T21:34:52,287   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:52,288     117 |     struct unary_function
2023-09-08T21:34:52,288         |            ^~~~~~~~~~~~~~
2023-09-08T21:34:56,288   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:34:56,289                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:34:56,289                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2023-09-08T21:34:56,290   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:34:56,291      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:34:56,291         |                           ^~~~~~~~~~~~~~
2023-09-08T21:34:56,292   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:34:56,293                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:34:56,293                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:34:56,294                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:34:56,294                    from ./base//sbml/SBase.h:145,
2023-09-08T21:34:56,295                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2023-09-08T21:34:56,296   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:34:56,296     117 |     struct unary_function
2023-09-08T21:34:56,297         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:00,056   In file included from ./base//sbml/Rule.h:141,
2023-09-08T21:35:00,056                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T21:35:00,057                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2023-09-08T21:35:00,058   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:00,059      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:00,060         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:00,061   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:00,061                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:35:00,062                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:35:00,062                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:35:00,063                    from ./base//sbml/SBase.h:145,
2023-09-08T21:35:00,063                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2023-09-08T21:35:00,064   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:00,064     117 |     struct unary_function
2023-09-08T21:35:00,065         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:04,043   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:35:04,044                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:35:04,045                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:35:04,045                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2023-09-08T21:35:04,046   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:04,047      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:04,047         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:04,048   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:04,049                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:35:04,050                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:35:04,051                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:35:04,052                    from ./base//sbml/SBase.h:145,
2023-09-08T21:35:04,053                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2023-09-08T21:35:04,054   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:04,054     117 |     struct unary_function
2023-09-08T21:35:04,055         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:07,918   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:07,918                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:07,919                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2023-09-08T21:35:07,920   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:07,920      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:07,921         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:07,922   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:07,923                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:07,923   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:07,924     117 |     struct unary_function
2023-09-08T21:35:07,925         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:08,239   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:08,240   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:08,240     104 |   if (&(node) == NULL)
2023-09-08T21:35:08,241         |               ^
2023-09-08T21:35:08,242   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2023-09-08T21:35:08,243     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:08,244         |                                             ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:08,722   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:08,723     104 |   if (&(node) == NULL)
2023-09-08T21:35:08,724         |   ^~
2023-09-08T21:35:12,190   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:12,191                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:12,192                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2023-09-08T21:35:12,192   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:12,193      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:12,193         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:12,194   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:12,194                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:12,195   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:12,195     117 |     struct unary_function
2023-09-08T21:35:12,196         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:12,513   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:12,513   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:12,514     104 |   if (&(node) == NULL)
2023-09-08T21:35:12,515         |               ^
2023-09-08T21:35:12,516   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T21:35:12,516     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:12,517         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:13,010   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:13,010     104 |   if (&(node) == NULL)
2023-09-08T21:35:13,011         |   ^~
2023-09-08T21:35:16,291   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:16,292                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:16,292                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2023-09-08T21:35:16,293   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:16,293      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:16,294         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:16,295   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:16,295                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:16,296   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:16,297     117 |     struct unary_function
2023-09-08T21:35:16,297         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:20,769   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:20,770                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:20,771                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2023-09-08T21:35:20,771   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:20,772      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:20,773         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:20,774   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:20,774                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:20,774   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:20,775     117 |     struct unary_function
2023-09-08T21:35:20,775         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:21,095   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:21,096   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:21,096     100 |   if (&(node) == NULL)
2023-09-08T21:35:21,097         |               ^
2023-09-08T21:35:21,097   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2023-09-08T21:35:21,098      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:21,098         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:21,583   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:21,583     100 |   if (&(node) == NULL)
2023-09-08T21:35:21,584         |   ^~
2023-09-08T21:35:25,829   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:25,830                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:25,830                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2023-09-08T21:35:25,831   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:25,832      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:25,833         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:25,833   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:25,834                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:25,835   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:25,836     117 |     struct unary_function
2023-09-08T21:35:25,836         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:30,314   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:35:30,314                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:35:30,315                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:35:30,316                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2023-09-08T21:35:30,317   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:30,317      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:30,318         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:30,319   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:30,319                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:35:30,320   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:30,321     117 |     struct unary_function
2023-09-08T21:35:30,321         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:34,904   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:35:34,904                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:35:34,905                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:35:34,906                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2023-09-08T21:35:34,907   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:34,908      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:34,908         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:34,909   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:34,910                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T21:35:34,910   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:34,911     117 |     struct unary_function
2023-09-08T21:35:34,912         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:38,751   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:38,752                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:38,753                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2023-09-08T21:35:38,753   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:38,754      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:38,754         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:38,755   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:38,756                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:38,756   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:38,757     117 |     struct unary_function
2023-09-08T21:35:38,757         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:39,073   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:39,074   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:39,074     100 |   if (&(node) == NULL)
2023-09-08T21:35:39,075         |               ^
2023-09-08T21:35:39,075   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2023-09-08T21:35:39,076      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:39,077         |                                                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:39,575   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:39,576     100 |   if (&(node) == NULL)
2023-09-08T21:35:39,576         |   ^~
2023-09-08T21:35:43,009   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:43,010                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:43,011                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2023-09-08T21:35:43,012   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:43,012      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:43,013         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:43,014   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:43,015                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:43,016   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:43,017     117 |     struct unary_function
2023-09-08T21:35:43,017         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:43,329   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:43,330   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:43,331     105 |   if (&(node) == NULL)
2023-09-08T21:35:43,332         |               ^
2023-09-08T21:35:43,332   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2023-09-08T21:35:43,333     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:43,333         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:43,817   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:43,818     105 |   if (&(node) == NULL)
2023-09-08T21:35:43,818         |   ^~
2023-09-08T21:35:47,053   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:47,054                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:47,054                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2023-09-08T21:35:47,055   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:47,055      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:47,056         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:47,056   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:47,057                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:47,058   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:47,058     117 |     struct unary_function
2023-09-08T21:35:47,058         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:47,377   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:35:47,378   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:35:47,379     104 |   if (&(node) == NULL)
2023-09-08T21:35:47,380         |               ^
2023-09-08T21:35:47,380   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2023-09-08T21:35:47,381     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:35:47,382         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:35:47,867   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:35:47,868     104 |   if (&(node) == NULL)
2023-09-08T21:35:47,868         |   ^~
2023-09-08T21:35:51,120   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:35:51,120                    from ./base//sbml/Model.h:446,
2023-09-08T21:35:51,121                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2023-09-08T21:35:51,122   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:35:51,122      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:35:51,123         |                           ^~~~~~~~~~~~~~
2023-09-08T21:35:51,124   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:35:51,124                    from ./base//sbml/Model.h:444:
2023-09-08T21:35:51,125   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:35:51,126     117 |     struct unary_function
2023-09-08T21:35:51,127         |            ^~~~~~~~~~~~~~
2023-09-08T21:35:53,573   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2023-09-08T21:35:53,574   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2023-09-08T21:35:53,575     188 |       sprintf(react, "KL_%u", n);
2023-09-08T21:35:53,576         |                          ^~
2023-09-08T21:35:53,576   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2023-09-08T21:35:53,577     188 |       sprintf(react, "KL_%u", n);
2023-09-08T21:35:53,577         |                      ^~~~~~~
2023-09-08T21:35:53,578   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2023-09-08T21:35:53,578     188 |       sprintf(react, "KL_%u", n);
2023-09-08T21:35:53,579         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:35:53,579   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2023-09-08T21:35:53,580     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T21:35:53,580         |                         ^~
2023-09-08T21:35:53,581   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2023-09-08T21:35:53,581     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T21:35:53,582         |                   ^~~~~~~~~
2023-09-08T21:35:53,582   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2023-09-08T21:35:53,583     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T21:35:53,583         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T21:36:03,832   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:36:03,832                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:36:03,833                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:36:03,834                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2023-09-08T21:36:03,834                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2023-09-08T21:36:03,835   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:03,836      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:03,836         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:03,837   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:03,838                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2023-09-08T21:36:03,839   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:03,839     117 |     struct unary_function
2023-09-08T21:36:03,840         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:07,608   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:07,608                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:07,611                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2023-09-08T21:36:07,612   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:07,613      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:07,614         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:07,615   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:07,615                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:07,616   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:07,617     117 |     struct unary_function
2023-09-08T21:36:07,618         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:07,939   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:36:07,940   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:36:07,941     100 |   if (&(node) == NULL)
2023-09-08T21:36:07,942         |               ^
2023-09-08T21:36:07,943   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2023-09-08T21:36:07,943      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:36:07,944         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:36:08,425   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:36:08,426     100 |   if (&(node) == NULL)
2023-09-08T21:36:08,426         |   ^~
2023-09-08T21:36:12,581   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:12,582                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:12,582                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2023-09-08T21:36:12,583   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:12,583      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:12,584         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:12,584   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:12,585                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:12,585   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:12,586     117 |     struct unary_function
2023-09-08T21:36:12,587         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:12,905   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:36:12,905   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:36:12,906     103 |   if (&(node) == NULL)
2023-09-08T21:36:12,906         |               ^
2023-09-08T21:36:12,907   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2023-09-08T21:36:12,908     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:36:12,909         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:36:13,395   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:36:13,395     103 |   if (&(node) == NULL)
2023-09-08T21:36:13,396         |   ^~
2023-09-08T21:36:16,656   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:16,656                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:16,657                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2023-09-08T21:36:16,657   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:16,658      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:16,659         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:16,659   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:16,660                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:16,661   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:16,661     117 |     struct unary_function
2023-09-08T21:36:16,662         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:21,453   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:36:21,454                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:36:21,454                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:36:21,455                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2023-09-08T21:36:21,456   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:21,456      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:21,456         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:21,457   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:21,457                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:36:21,458                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:36:21,458                    from ./base//sbml/SBO.h:196,
2023-09-08T21:36:21,459                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2023-09-08T21:36:21,459   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:21,460     117 |     struct unary_function
2023-09-08T21:36:21,460         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:25,388   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:25,389                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:25,389                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2023-09-08T21:36:25,390   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:25,391      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:25,391         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:25,392   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:25,392                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:25,393   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:25,394     117 |     struct unary_function
2023-09-08T21:36:25,395         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:29,639   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:29,639                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:29,640                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2023-09-08T21:36:29,641   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:29,641      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:29,642         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:29,643   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:29,644                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:29,644   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:29,645     117 |     struct unary_function
2023-09-08T21:36:29,645         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:33,921   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:36:33,922                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:36:33,922                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:36:33,923                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T21:36:33,924                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2023-09-08T21:36:33,925                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2023-09-08T21:36:33,925   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:33,926      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:33,927         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:33,928   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:33,928                    from ./base//sbml/xml/XMLAttributes.h:234,
2023-09-08T21:36:33,929                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T21:36:33,929                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T21:36:33,930                    from ./base//sbml/SBase.h:145,
2023-09-08T21:36:33,930                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2023-09-08T21:36:33,931   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:33,931     117 |     struct unary_function
2023-09-08T21:36:33,932         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:38,897   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:38,897                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:38,897                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2023-09-08T21:36:38,898   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:38,898      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:38,899         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:38,900   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:38,900                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:38,901   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:38,901     117 |     struct unary_function
2023-09-08T21:36:38,902         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:42,697   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:42,698                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:42,699                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2023-09-08T21:36:42,699   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:42,700      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:42,701         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:42,701   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:42,702                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:42,703   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:42,703     117 |     struct unary_function
2023-09-08T21:36:42,704         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:46,507   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:46,507                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:46,508                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2023-09-08T21:36:46,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:46,509      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:46,510         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:46,511   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:46,511                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:46,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:46,513     117 |     struct unary_function
2023-09-08T21:36:46,513         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:50,386   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:36:50,387                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:36:50,388                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:36:50,389                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2023-09-08T21:36:50,389                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2023-09-08T21:36:50,390   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:50,391      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:50,391         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:50,392   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:50,392                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2023-09-08T21:36:50,393   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:50,393     117 |     struct unary_function
2023-09-08T21:36:50,394         |            ^~~~~~~~~~~~~~
2023-09-08T21:36:55,790   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:36:55,790                    from ./base//sbml/Model.h:446,
2023-09-08T21:36:55,791                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2023-09-08T21:36:55,791   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:36:55,792      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:36:55,792         |                           ^~~~~~~~~~~~~~
2023-09-08T21:36:55,793   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:36:55,793                    from ./base//sbml/Model.h:444:
2023-09-08T21:36:55,794   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:36:55,795     117 |     struct unary_function
2023-09-08T21:36:55,795         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:00,114   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:00,114                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:00,115                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2023-09-08T21:37:00,115   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:00,116      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:00,117         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:00,117   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:00,118                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:00,119   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:00,120     117 |     struct unary_function
2023-09-08T21:37:00,120         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:03,925   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:03,926                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:03,926                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2023-09-08T21:37:03,927   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:03,928      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:03,928         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:03,929   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:03,929                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:03,930   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:03,930     117 |     struct unary_function
2023-09-08T21:37:03,931         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:07,984   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:07,984                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:07,984                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2023-09-08T21:37:07,985   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:07,986      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:07,987         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:07,987   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:07,988                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:07,988   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:07,989     117 |     struct unary_function
2023-09-08T21:37:07,989         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:12,046   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:12,046                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:12,047                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2023-09-08T21:37:12,047   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:12,048      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:12,048         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:12,049   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:12,050                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:12,050   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:12,051     117 |     struct unary_function
2023-09-08T21:37:12,051         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:16,117   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:16,118                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:16,119                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2023-09-08T21:37:16,121   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:16,122      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:16,123         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:16,125   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:16,126                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:16,128   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:16,128     117 |     struct unary_function
2023-09-08T21:37:16,129         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:19,998   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T21:37:19,999                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T21:37:20,000                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T21:37:20,000                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2023-09-08T21:37:20,001   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:20,002      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:20,002         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:20,003   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:20,004                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T21:37:20,005                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T21:37:20,005                    from ./base//sbml/SBO.h:196,
2023-09-08T21:37:20,006                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2023-09-08T21:37:20,007   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:20,008     117 |     struct unary_function
2023-09-08T21:37:20,008         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:23,956   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:23,957                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:23,957                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2023-09-08T21:37:23,958   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:23,958      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:23,959         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:23,959   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:23,960                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:23,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:23,961     117 |     struct unary_function
2023-09-08T21:37:23,961         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:28,108   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T21:37:28,109                    from ./base//sbml/Model.h:446,
2023-09-08T21:37:28,110                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2023-09-08T21:37:28,110   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:28,111      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T21:37:28,111         |                           ^~~~~~~~~~~~~~
2023-09-08T21:37:28,112   In file included from /usr/include/c++/12/string:48,
2023-09-08T21:37:28,112                    from ./base//sbml/Model.h:444:
2023-09-08T21:37:28,113   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:28,113     117 |     struct unary_function
2023-09-08T21:37:28,114         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:28,433   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T21:37:28,434   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:37:28,435     100 |   if (&(node) == NULL)
2023-09-08T21:37:28,436         |               ^
2023-09-08T21:37:28,437   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2023-09-08T21:37:28,437      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T21:37:28,438         |                                               ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:28,920   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:28,921     100 |   if (&(node) == NULL)
2023-09-08T21:37:28,921         |   ^~
2023-09-08T21:37:42,580   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T21:37:42,581   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:37:42,581      90 |   if (&orig == NULL)
2023-09-08T21:37:42,582         |             ^
2023-09-08T21:37:42,583   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2023-09-08T21:37:42,583      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2023-09-08T21:37:42,584         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,588   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T21:37:42,589   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:37:42,590     110 |   if (&rhs == NULL)
2023-09-08T21:37:42,591         |            ^
2023-09-08T21:37:42,592   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2023-09-08T21:37:42,592     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2023-09-08T21:37:42,593         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:37:42,593   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:37:42,594   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,594     149 |   if (&name == NULL || &value == NULL
2023-09-08T21:37:42,595         |             ^
2023-09-08T21:37:42,596   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2023-09-08T21:37:42,596     144 | XMLAttributes::add (const std::string& name,
2023-09-08T21:37:42,597         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,597   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,598     149 |   if (&name == NULL || &value == NULL
2023-09-08T21:37:42,599         |                               ^
2023-09-08T21:37:42,599   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2023-09-08T21:37:42,600     145 |                     const std::string& value,
2023-09-08T21:37:42,600         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,601   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2023-09-08T21:37:42,602     150 |                     || &namespaceURI == NULL
2023-09-08T21:37:42,602         |                                      ^
2023-09-08T21:37:42,603   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2023-09-08T21:37:42,603     146 |                     const std::string& namespaceURI,
2023-09-08T21:37:42,604         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T21:37:42,605   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:37:42,605     151 |                     || &prefix == NULL)
2023-09-08T21:37:42,606         |                                ^
2023-09-08T21:37:42,607   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2023-09-08T21:37:42,607     147 |                     const std::string& prefix)
2023-09-08T21:37:42,608         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,609   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T21:37:42,610   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,611     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:37:42,611         |               ^
2023-09-08T21:37:42,612   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2023-09-08T21:37:42,613     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T21:37:42,613         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,614   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,615     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:37:42,615         |                                 ^
2023-09-08T21:37:42,616   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2023-09-08T21:37:42,617     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T21:37:42,618         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,619   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T21:37:42,620   ./base/sbml/xml/XMLAttributes.cpp:281:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,620     281 |   if (&name == NULL) return -1;
2023-09-08T21:37:42,621         |             ^
2023-09-08T21:37:42,622   ./base/sbml/xml/XMLAttributes.cpp:279:45: note: ‘name’ declared here
2023-09-08T21:37:42,622     279 | XMLAttributes::getIndex (const std::string& name) const
2023-09-08T21:37:42,623         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,623   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T21:37:42,624   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,624     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T21:37:42,625         |             ^
2023-09-08T21:37:42,626   ./base/sbml/xml/XMLAttributes.cpp:299:45: note: ‘name’ declared here
2023-09-08T21:37:42,626     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T21:37:42,627         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,627   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:37:42,628     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T21:37:42,629         |                             ^
2023-09-08T21:37:42,629   ./base/sbml/xml/XMLAttributes.cpp:299:70: note: ‘uri’ declared here
2023-09-08T21:37:42,630     299 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T21:37:42,631         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:37:42,632   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T21:37:42,633   ./base/sbml/xml/XMLAttributes.cpp:320:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,633     320 |   if (&triple  == NULL) return -1;
2023-09-08T21:37:42,634         |                ^
2023-09-08T21:37:42,635   ./base/sbml/xml/XMLAttributes.cpp:318:43: note: ‘triple’ declared here
2023-09-08T21:37:42,636     318 | XMLAttributes::getIndex (const XMLTriple& triple) const
2023-09-08T21:37:42,637         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,637   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,638   ./base/sbml/xml/XMLAttributes.cpp:541:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,639     541 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T21:37:42,639         |                ^
2023-09-08T21:37:42,640   ./base/sbml/xml/XMLAttributes.cpp:529:41: note: ‘value’ declared here
2023-09-08T21:37:42,641     529 |                          , bool&        value
2023-09-08T21:37:42,641         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,642   ./base/sbml/xml/XMLAttributes.cpp:560:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,643     560 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T21:37:42,644         |                                          ^
2023-09-08T21:37:42,644   ./base/sbml/xml/XMLAttributes.cpp:528:47: note: ‘name’ declared here
2023-09-08T21:37:42,645     528 |                          , const std::string& name
2023-09-08T21:37:42,646         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,647   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,648   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,648     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T21:37:42,649         |               ^
2023-09-08T21:37:42,649   ./base/sbml/xml/XMLAttributes.cpp:611:45: note: ‘triple’ declared here
2023-09-08T21:37:42,650     611 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T21:37:42,650         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,651   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,652     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T21:37:42,652         |                                 ^
2023-09-08T21:37:42,653   ./base/sbml/xml/XMLAttributes.cpp:612:45: note: ‘value’ declared here
2023-09-08T21:37:42,653     612 |                          , bool&            value
2023-09-08T21:37:42,654         |                            ~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,654   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,655   ./base/sbml/xml/XMLAttributes.cpp:655:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,656     655 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T21:37:42,656         |                 ^
2023-09-08T21:37:42,657   ./base/sbml/xml/XMLAttributes.cpp:643:41: note: ‘value’ declared here
2023-09-08T21:37:42,658     643 |                          , double&      value
2023-09-08T21:37:42,658         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,659   ./base/sbml/xml/XMLAttributes.cpp:703:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,660     703 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T21:37:42,661         |                                          ^
2023-09-08T21:37:42,661   ./base/sbml/xml/XMLAttributes.cpp:642:47: note: ‘name’ declared here
2023-09-08T21:37:42,662     642 |                          , const std::string& name
2023-09-08T21:37:42,663         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,664   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,665   ./base/sbml/xml/XMLAttributes.cpp:801:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,665     801 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T21:37:42,666         |                                     ^
2023-09-08T21:37:42,667   ./base/sbml/xml/XMLAttributes.cpp:789:41: note: ‘value’ declared here
2023-09-08T21:37:42,667     789 |                          , long&        value
2023-09-08T21:37:42,668         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,668   ./base/sbml/xml/XMLAttributes.cpp:821:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,669     821 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T21:37:42,670         |                                          ^
2023-09-08T21:37:42,670   ./base/sbml/xml/XMLAttributes.cpp:788:65: note: ‘name’ declared here
2023-09-08T21:37:42,671     788 |                                            , const std::string& name
2023-09-08T21:37:42,671         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,672   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,673   ./base/sbml/xml/XMLAttributes.cpp:856:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,673     856 |   if (&triple == NULL) return false;
2023-09-08T21:37:42,674         |               ^
2023-09-08T21:37:42,674   ./base/sbml/xml/XMLAttributes.cpp:849:45: note: ‘triple’ declared here
2023-09-08T21:37:42,675     849 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T21:37:42,675         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,676   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,676   ./base/sbml/xml/XMLAttributes.cpp:945:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,677     945 |   if (&triple == NULL) return false;
2023-09-08T21:37:42,678         |               ^
2023-09-08T21:37:42,678   ./base/sbml/xml/XMLAttributes.cpp:938:45: note: ‘triple’ declared here
2023-09-08T21:37:42,679     938 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T21:37:42,679         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,680   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,680   ./base/sbml/xml/XMLAttributes.cpp:1037:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,681    1037 |   if (&triple == NULL) return false;
2023-09-08T21:37:42,681         |               ^
2023-09-08T21:37:42,682   ./base/sbml/xml/XMLAttributes.cpp:1030:45: note: ‘triple’ declared here
2023-09-08T21:37:42,682    1030 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T21:37:42,683         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:42,683   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,684   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:37:42,685    1091 |   if ( index != -1 && &value != NULL)
2023-09-08T21:37:42,685         |                              ^
2023-09-08T21:37:42,686   ./base/sbml/xml/XMLAttributes.cpp:1083:41: note: ‘value’ declared here
2023-09-08T21:37:42,687    1083 |                          , std::string& value
2023-09-08T21:37:42,687         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:42,688   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:37:42,689    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T21:37:42,689         |                                                      ^
2023-09-08T21:37:42,690   ./base/sbml/xml/XMLAttributes.cpp:1082:47: note: ‘name’ declared here
2023-09-08T21:37:42,691    1082 |                          , const std::string& name
2023-09-08T21:37:42,692         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:42,692   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:42,693   ./base/sbml/xml/XMLAttributes.cpp:1127:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:37:42,694    1127 |   if (&triple == NULL) return false;
2023-09-08T21:37:42,695         |               ^
2023-09-08T21:37:42,695   ./base/sbml/xml/XMLAttributes.cpp:1120:45: note: ‘triple’ declared here
2023-09-08T21:37:42,696    1120 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T21:37:42,696         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:37:43,109   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T21:37:43,110   ./base/sbml/xml/XMLAttributes.cpp:320:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,110     320 |   if (&triple  == NULL) return -1;
2023-09-08T21:37:43,111         |   ^~
2023-09-08T21:37:43,123   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T21:37:43,123   ./base/sbml/xml/XMLAttributes.cpp:281:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,124     281 |   if (&name == NULL) return -1;
2023-09-08T21:37:43,124         |   ^~
2023-09-08T21:37:43,125   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T21:37:43,126   ./base/sbml/xml/XMLAttributes.cpp:301:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,126     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T21:37:43,127         |             ^
2023-09-08T21:37:43,127   ./base/sbml/xml/XMLAttributes.cpp:301:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,128     301 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T21:37:43,128         |                             ^
2023-09-08T21:37:43,142   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T21:37:43,143   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,143      90 |   if (&orig == NULL)
2023-09-08T21:37:43,144         |   ^~
2023-09-08T21:37:43,145   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T21:37:43,145   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,146     110 |   if (&rhs == NULL)
2023-09-08T21:37:43,147         |   ^~
2023-09-08T21:37:43,148   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:37:43,149   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,149     149 |   if (&name == NULL || &value == NULL
2023-09-08T21:37:43,150         |             ^
2023-09-08T21:37:43,150   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,151     149 |   if (&name == NULL || &value == NULL
2023-09-08T21:37:43,152         |                               ^
2023-09-08T21:37:43,152   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,153     150 |                     || &namespaceURI == NULL
2023-09-08T21:37:43,154         |                                      ^
2023-09-08T21:37:43,155   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,155     151 |                     || &prefix == NULL)
2023-09-08T21:37:43,156         |                                ^
2023-09-08T21:37:43,157   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T21:37:43,158   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,158     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:37:43,159         |               ^
2023-09-08T21:37:43,160   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,160     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:37:43,161         |                                 ^
2023-09-08T21:37:43,161   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,162   ./base/sbml/xml/XMLAttributes.cpp:560:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,163     560 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T21:37:43,163         |                                 ^
2023-09-08T21:37:43,164   ./base/sbml/xml/XMLAttributes.cpp:541:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,164     541 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T21:37:43,165         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:37:43,166   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,166   ./base/sbml/xml/XMLAttributes.cpp:618:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,167     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T21:37:43,168         |               ^
2023-09-08T21:37:43,169   ./base/sbml/xml/XMLAttributes.cpp:618:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,170     618 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T21:37:43,170         |                                 ^
2023-09-08T21:37:43,171   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,172   ./base/sbml/xml/XMLAttributes.cpp:703:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,173     703 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T21:37:43,173         |                                 ^
2023-09-08T21:37:43,174   ./base/sbml/xml/XMLAttributes.cpp:655:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,175     655 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T21:37:43,176         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:37:43,176   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,177   ./base/sbml/xml/XMLAttributes.cpp:821:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,178     821 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T21:37:43,178         |                                 ^
2023-09-08T21:37:43,179   ./base/sbml/xml/XMLAttributes.cpp:801:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,180     801 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T21:37:43,181         |                           ^
2023-09-08T21:37:43,181   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,182   ./base/sbml/xml/XMLAttributes.cpp:856:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,183     856 |   if (&triple == NULL) return false;
2023-09-08T21:37:43,184         |   ^~
2023-09-08T21:37:43,184   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,185   ./base/sbml/xml/XMLAttributes.cpp:945:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,186     945 |   if (&triple == NULL) return false;
2023-09-08T21:37:43,186         |   ^~
2023-09-08T21:37:43,187   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,187   ./base/sbml/xml/XMLAttributes.cpp:1037:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,188    1037 |   if (&triple == NULL) return false;
2023-09-08T21:37:43,188         |   ^~
2023-09-08T21:37:43,189   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,190   ./base/sbml/xml/XMLAttributes.cpp:1099:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,190    1099 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T21:37:43,191         |                                                      ^
2023-09-08T21:37:43,192   ./base/sbml/xml/XMLAttributes.cpp:1091:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,192    1091 |   if ( index != -1 && &value != NULL)
2023-09-08T21:37:43,193         |                              ^
2023-09-08T21:37:43,194   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T21:37:43,195   ./base/sbml/xml/XMLAttributes.cpp:1127:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:43,195    1127 |   if (&triple == NULL) return false;
2023-09-08T21:37:43,196         |   ^~
2023-09-08T21:37:50,789   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T21:37:50,790   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T21:37:50,791     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T21:37:50,792         |                       ^
2023-09-08T21:37:50,792   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T21:37:50,793     322 |                     , const std::string& details
2023-09-08T21:37:50,794         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:37:50,794   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T21:37:50,795     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T21:37:50,796         |                   ^
2023-09-08T21:37:50,796   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T21:37:50,797     322 |                     , const std::string& details
2023-09-08T21:37:50,798         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:37:50,799   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T21:37:50,799     403 |   if (&details == NULL)
2023-09-08T21:37:50,800         |                ^
2023-09-08T21:37:50,801   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T21:37:50,802     322 |                     , const std::string& details
2023-09-08T21:37:50,802         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:37:50,803   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T21:37:50,803   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:37:50,804     428 |   if (&orig == NULL)
2023-09-08T21:37:50,804         |             ^
2023-09-08T21:37:50,805   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2023-09-08T21:37:50,806     426 | XMLError::XMLError(const XMLError& orig)
2023-09-08T21:37:50,806         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:37:50,807   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T21:37:50,807   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:37:50,808     455 |   if (&rhs == NULL)
2023-09-08T21:37:50,808         |            ^
2023-09-08T21:37:50,809   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2023-09-08T21:37:50,809     453 | XMLError::operator=(const XMLError& rhs)
2023-09-08T21:37:50,810         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T21:37:51,218   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T21:37:51,218   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:51,219     428 |   if (&orig == NULL)
2023-09-08T21:37:51,220         |   ^~
2023-09-08T21:37:51,220   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T21:37:51,221   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:51,222     455 |   if (&rhs == NULL)
2023-09-08T21:37:51,223         |   ^~
2023-09-08T21:37:51,223   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T21:37:51,224   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:51,225     403 |   if (&details == NULL)
2023-09-08T21:37:51,226         |   ^~
2023-09-08T21:37:51,226   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:51,227     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T21:37:51,228         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:37:51,229   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:51,229     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T21:37:51,230         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T21:37:54,447   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T21:37:54,448      96 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T21:37:54,449         |                        ^~~~~~~~~~~~~~
2023-09-08T21:37:54,449   In file included from /usr/include/c++/12/functional:49,
2023-09-08T21:37:54,450                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2023-09-08T21:37:54,451   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T21:37:54,451     117 |     struct unary_function
2023-09-08T21:37:54,452         |            ^~~~~~~~~~~~~~
2023-09-08T21:37:54,453   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2023-09-08T21:37:54,453   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2023-09-08T21:37:54,454     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T21:37:54,455         |              ^
2023-09-08T21:37:54,455   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2023-09-08T21:37:54,456     118 | XMLErrorLog::add (const XMLError& error)
2023-09-08T21:37:54,456         |                   ~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:37:54,756   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:54,756     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T21:37:54,757         |   ^~
2023-09-08T21:37:56,786   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T21:37:56,787   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T21:37:56,787      57 |   if (&filename == NULL) return;
2023-09-08T21:37:56,788         |                 ^
2023-09-08T21:37:56,788   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2023-09-08T21:37:56,789      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2023-09-08T21:37:56,790         |                               ~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T21:37:56,984   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T21:37:56,984   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:37:56,985      57 |   if (&filename == NULL) return;
2023-09-08T21:37:56,986         |   ^~
2023-09-08T21:38:05,835   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T21:38:05,835   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:38:05,836      76 |   if (&orig == NULL)
2023-09-08T21:38:05,837         |             ^
2023-09-08T21:38:05,838   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2023-09-08T21:38:05,839      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2023-09-08T21:38:05,841         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:05,842   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T21:38:05,843   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:38:05,844      93 |   if (&rhs == NULL)
2023-09-08T21:38:05,845         |            ^
2023-09-08T21:38:05,846   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2023-09-08T21:38:05,846      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2023-09-08T21:38:05,847         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:05,848   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T21:38:05,848   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:38:05,849     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:05,850         |            ^
2023-09-08T21:38:05,850   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2023-09-08T21:38:05,851     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T21:38:05,852         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:05,853   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:05,854     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:05,854         |                               ^
2023-09-08T21:38:05,855   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2023-09-08T21:38:05,855     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T21:38:05,856         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:05,869   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T21:38:05,869   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:05,870     322 |   if (&prefix == NULL) return std::string();
2023-09-08T21:38:05,871         |               ^
2023-09-08T21:38:05,871   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2023-09-08T21:38:05,872     320 | XMLNamespaces::getURI (const std::string& prefix) const
2023-09-08T21:38:05,872         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:05,873   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T21:38:05,874   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:38:05,874     348 |   if (&uri == NULL) return false;
2023-09-08T21:38:05,875         |            ^
2023-09-08T21:38:05,876   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2023-09-08T21:38:05,877     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2023-09-08T21:38:05,878         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:05,879   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T21:38:05,880   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:05,881     359 |   if (&prefix == NULL) return false;
2023-09-08T21:38:05,882         |               ^
2023-09-08T21:38:05,883   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2023-09-08T21:38:05,885     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2023-09-08T21:38:05,886         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:05,887   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T21:38:05,889   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:38:05,890     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T21:38:05,891         |            ^
2023-09-08T21:38:05,893   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2023-09-08T21:38:05,894     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T21:38:05,965         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:05,966   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:05,967     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T21:38:05,968         |                               ^
2023-09-08T21:38:05,968   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2023-09-08T21:38:05,969     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T21:38:05,970         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:06,350   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T21:38:06,351   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,351     322 |   if (&prefix == NULL) return std::string();
2023-09-08T21:38:06,352         |   ^~
2023-09-08T21:38:06,352   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T21:38:06,353   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,353     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T21:38:06,354         |            ^
2023-09-08T21:38:06,354   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,355     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T21:38:06,355         |                               ^
2023-09-08T21:38:06,356   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T21:38:06,357   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,357     348 |   if (&uri == NULL) return false;
2023-09-08T21:38:06,358         |   ^~
2023-09-08T21:38:06,358   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T21:38:06,359   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,360     359 |   if (&prefix == NULL) return false;
2023-09-08T21:38:06,360         |   ^~
2023-09-08T21:38:06,361   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T21:38:06,362   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,362      76 |   if (&orig == NULL)
2023-09-08T21:38:06,363         |   ^~
2023-09-08T21:38:06,364   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T21:38:06,365   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,366      93 |   if (&rhs == NULL)
2023-09-08T21:38:06,366         |   ^~
2023-09-08T21:38:06,367   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T21:38:06,368   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,369     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:06,369         |            ^
2023-09-08T21:38:06,370   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:06,371     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:06,371         |                               ^
2023-09-08T21:38:10,789   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T21:38:10,790   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:38:10,791     197 |   if (&rhs == NULL)
2023-09-08T21:38:10,791         |            ^
2023-09-08T21:38:10,792   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2023-09-08T21:38:10,793     195 | XMLNode::operator=(const XMLNode& rhs)
2023-09-08T21:38:10,793         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:10,794   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T21:38:10,795   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:38:10,796     230 |   if (&(node) == NULL)
2023-09-08T21:38:10,796         |               ^
2023-09-08T21:38:10,797   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2023-09-08T21:38:10,797     226 | XMLNode::addChild (const XMLNode& node)
2023-09-08T21:38:10,798         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:10,799   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T21:38:10,799   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T21:38:10,800     267 |   if (&(node) == NULL)
2023-09-08T21:38:10,800         |               ^
2023-09-08T21:38:10,801   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2023-09-08T21:38:10,802     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2023-09-08T21:38:10,803         |                                       ~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:10,804   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T21:38:10,804   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:10,805     413 |   if (&name == NULL) return -1;
2023-09-08T21:38:10,806         |             ^
2023-09-08T21:38:10,807   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2023-09-08T21:38:10,807     411 | XMLNode::getIndex (const std::string& name) const
2023-09-08T21:38:10,808         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:10,809   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T21:38:10,810   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2023-09-08T21:38:10,810     435 |   if (&other == NULL) return false;
2023-09-08T21:38:10,811         |              ^
2023-09-08T21:38:10,812   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2023-09-08T21:38:10,813     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2023-09-08T21:38:10,813         |                 ~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:10,816   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T21:38:10,817   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:38:10,817     507 |   if (&stream == NULL) return;
2023-09-08T21:38:10,818         |               ^
2023-09-08T21:38:10,819   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2023-09-08T21:38:10,820     505 | XMLNode::write (XMLOutputStream& stream) const
2023-09-08T21:38:10,820         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:10,822   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T21:38:10,822   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2023-09-08T21:38:10,823     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T21:38:10,824         |               ^
2023-09-08T21:38:10,825   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2023-09-08T21:38:10,825     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2023-09-08T21:38:10,826         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:11,378   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T21:38:11,378   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,379     413 |   if (&name == NULL) return -1;
2023-09-08T21:38:11,379         |   ^~
2023-09-08T21:38:11,380   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T21:38:11,380   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,381     507 |   if (&stream == NULL) return;
2023-09-08T21:38:11,381         |   ^~
2023-09-08T21:38:11,398   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T21:38:11,399   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,400     197 |   if (&rhs == NULL)
2023-09-08T21:38:11,400         |   ^~
2023-09-08T21:38:11,402   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T21:38:11,403   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,404     230 |   if (&(node) == NULL)
2023-09-08T21:38:11,404         |   ^~
2023-09-08T21:38:11,405   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T21:38:11,405   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,406     267 |   if (&(node) == NULL)
2023-09-08T21:38:11,407         |   ^~
2023-09-08T21:38:11,407   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T21:38:11,408   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,409     435 |   if (&other == NULL) return false;
2023-09-08T21:38:11,410         |   ^~
2023-09-08T21:38:11,410   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T21:38:11,411   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:11,412     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T21:38:11,413         |   ^~
2023-09-08T21:38:17,710   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T21:38:17,711   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T21:38:17,712     220 |   if (&stream == NULL)
2023-09-08T21:38:17,712         |               ^
2023-09-08T21:38:17,713   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2023-09-08T21:38:17,714     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2023-09-08T21:38:17,715         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,715   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T21:38:17,716   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,717     236 |   if(&name == NULL) return;
2023-09-08T21:38:17,717         |            ^
2023-09-08T21:38:17,718   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2023-09-08T21:38:17,719     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2023-09-08T21:38:17,719         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,721   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T21:38:17,721   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,722     270 |   if(&triple == NULL) return;
2023-09-08T21:38:17,722         |              ^
2023-09-08T21:38:17,723   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2023-09-08T21:38:17,723     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2023-09-08T21:38:17,724         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,725   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T21:38:17,725   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,726     313 |   if (&name == NULL) return;
2023-09-08T21:38:17,726         |             ^
2023-09-08T21:38:17,727   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2023-09-08T21:38:17,727     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2023-09-08T21:38:17,728         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,729   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T21:38:17,729   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,730     344 |   if (&triple == NULL) return;
2023-09-08T21:38:17,731         |               ^
2023-09-08T21:38:17,731   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2023-09-08T21:38:17,732     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2023-09-08T21:38:17,732         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,733   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T21:38:17,734   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,735     374 |   if (&name == NULL) return;
2023-09-08T21:38:17,736         |             ^
2023-09-08T21:38:17,736   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2023-09-08T21:38:17,737     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2023-09-08T21:38:17,738         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,739   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T21:38:17,739   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,740     409 |   if (&triple == NULL) return;
2023-09-08T21:38:17,741         |               ^
2023-09-08T21:38:17,742   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2023-09-08T21:38:17,742     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2023-09-08T21:38:17,743         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,744   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T21:38:17,745   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,746     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T21:38:17,746         |              ^
2023-09-08T21:38:17,747   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2023-09-08T21:38:17,748     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T21:38:17,748         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,749   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,749     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T21:38:17,750         |                                ^
2023-09-08T21:38:17,751   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2023-09-08T21:38:17,751     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T21:38:17,752         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,752   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T21:38:17,753   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,754     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,754         |             ^
2023-09-08T21:38:17,755   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2023-09-08T21:38:17,755     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T21:38:17,756         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,757   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,757     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,758         |                               ^
2023-09-08T21:38:17,759   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2023-09-08T21:38:17,760     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T21:38:17,760         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,761   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T21:38:17,762   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,762     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,763         |               ^
2023-09-08T21:38:17,764   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2023-09-08T21:38:17,765     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T21:38:17,765         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,766   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,767     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,767         |                                 ^
2023-09-08T21:38:17,768   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2023-09-08T21:38:17,769     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T21:38:17,770         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,771   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T21:38:17,771   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,772     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,773         |             ^
2023-09-08T21:38:17,774   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2023-09-08T21:38:17,774     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T21:38:17,774         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,775   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,776     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,776         |                               ^
2023-09-08T21:38:17,777   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2023-09-08T21:38:17,778     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T21:38:17,778         |                                                           ~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,779   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T21:38:17,779   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,780     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,781         |             ^
2023-09-08T21:38:17,781   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2023-09-08T21:38:17,782     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T21:38:17,782         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,783   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,784     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,785         |                               ^
2023-09-08T21:38:17,785   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2023-09-08T21:38:17,786     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T21:38:17,787         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,788   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T21:38:17,788   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,789     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,790         |             ^
2023-09-08T21:38:17,791   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2023-09-08T21:38:17,791     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T21:38:17,792         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,793   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,793     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,794         |                               ^
2023-09-08T21:38:17,795   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2023-09-08T21:38:17,796     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T21:38:17,796         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,797   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T21:38:17,798   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,799     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,800         |               ^
2023-09-08T21:38:17,800   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2023-09-08T21:38:17,801     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T21:38:17,801         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,802   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,802     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,803         |                                 ^
2023-09-08T21:38:17,804   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2023-09-08T21:38:17,804     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T21:38:17,805         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,806   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T21:38:17,806   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:17,807     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,808         |             ^
2023-09-08T21:38:17,808   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2023-09-08T21:38:17,809     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T21:38:17,810         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:17,810   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,811     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:17,812         |                               ^
2023-09-08T21:38:17,813   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2023-09-08T21:38:17,814     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T21:38:17,815         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:17,815   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T21:38:17,816   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:17,817     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,818         |               ^
2023-09-08T21:38:17,818   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2023-09-08T21:38:17,819     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2023-09-08T21:38:17,820         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:17,820   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T21:38:17,821     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:17,822         |                                 ^
2023-09-08T21:38:17,823   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2023-09-08T21:38:17,823     734 |                                  , const unsigned int&  value )
2023-09-08T21:38:17,824         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:18,257   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T21:38:18,257   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,258     236 |   if(&name == NULL) return;
2023-09-08T21:38:18,258         |   ^~
2023-09-08T21:38:18,259   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T21:38:18,259   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,260     313 |   if (&name == NULL) return;
2023-09-08T21:38:18,261         |   ^~
2023-09-08T21:38:18,261   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T21:38:18,262   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,262     374 |   if (&name == NULL) return;
2023-09-08T21:38:18,263         |   ^~
2023-09-08T21:38:18,263   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T21:38:18,264   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,264     270 |   if(&triple == NULL) return;
2023-09-08T21:38:18,265         |   ^~
2023-09-08T21:38:18,266   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T21:38:18,266   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,267     344 |   if (&triple == NULL) return;
2023-09-08T21:38:18,267         |   ^~
2023-09-08T21:38:18,268   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T21:38:18,269   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,269     409 |   if (&triple == NULL) return;
2023-09-08T21:38:18,270         |   ^~
2023-09-08T21:38:18,270   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T21:38:18,271   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,271     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,272         |               ^
2023-09-08T21:38:18,273   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,273     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,274         |                                 ^
2023-09-08T21:38:18,275   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T21:38:18,275   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,276     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,277         |               ^
2023-09-08T21:38:18,277   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,278     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,279         |                                 ^
2023-09-08T21:38:18,279   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T21:38:18,280   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,281     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,281         |               ^
2023-09-08T21:38:18,282   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,282     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T21:38:18,283         |                                 ^
2023-09-08T21:38:18,284   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T21:38:18,284   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,285     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T21:38:18,285         |              ^
2023-09-08T21:38:18,286   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,286     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T21:38:18,287         |                                ^
2023-09-08T21:38:18,288   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T21:38:18,288   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,289     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,290         |             ^
2023-09-08T21:38:18,290   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,291     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,291         |                               ^
2023-09-08T21:38:18,292   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T21:38:18,293   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,293     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,294         |             ^
2023-09-08T21:38:18,295   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,295     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,296         |                               ^
2023-09-08T21:38:18,296   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T21:38:18,297   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,298     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,298         |             ^
2023-09-08T21:38:18,299   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,300     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,300         |                               ^
2023-09-08T21:38:18,301   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T21:38:18,302   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,302     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,303         |             ^
2023-09-08T21:38:18,304   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,304     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,305         |                               ^
2023-09-08T21:38:18,306   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T21:38:18,306   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,307     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,307         |             ^
2023-09-08T21:38:18,308   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,308     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T21:38:18,309         |                               ^
2023-09-08T21:38:18,310   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T21:38:18,310   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:18,311     220 |   if (&stream == NULL)
2023-09-08T21:38:18,311         |   ^~
2023-09-08T21:38:24,896   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T21:38:24,897   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2023-09-08T21:38:24,897     132 |   if (&chars == NULL)
2023-09-08T21:38:24,898         |              ^
2023-09-08T21:38:24,899   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2023-09-08T21:38:24,899     123 | XMLToken::XMLToken (  const std::string&  chars
2023-09-08T21:38:24,900         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T21:38:24,902   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T21:38:24,903   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:38:24,903     156 |   if (&orig == NULL)
2023-09-08T21:38:24,904         |             ^
2023-09-08T21:38:24,904   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2023-09-08T21:38:24,905     154 | XMLToken::XMLToken(const XMLToken& orig)
2023-09-08T21:38:24,906         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:24,908   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T21:38:24,909   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:38:24,910     195 |   if (&rhs == NULL)
2023-09-08T21:38:24,910         |            ^
2023-09-08T21:38:24,911   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2023-09-08T21:38:24,912     193 | XMLToken::operator=(const XMLToken& rhs)
2023-09-08T21:38:24,912         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:24,915   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T21:38:24,916   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T21:38:24,917     312 |         if(&attributes == NULL)
2023-09-08T21:38:24,917         |                        ^
2023-09-08T21:38:24,918   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2023-09-08T21:38:24,919     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2023-09-08T21:38:24,920         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:38:24,925   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T21:38:24,926   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2023-09-08T21:38:24,927     783 |         if(&namespaces == NULL)
2023-09-08T21:38:24,927         |                        ^
2023-09-08T21:38:24,928   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2023-09-08T21:38:24,929     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2023-09-08T21:38:24,929         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T21:38:24,930   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T21:38:24,930   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:38:24,931     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:24,931         |            ^
2023-09-08T21:38:24,932   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2023-09-08T21:38:24,932     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T21:38:24,933         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:24,934   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:24,934     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:24,935         |                               ^
2023-09-08T21:38:24,935   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2023-09-08T21:38:24,936     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T21:38:24,936         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:24,939   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T21:38:24,939   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T21:38:24,940    1058 |         if(&triple == NULL)
2023-09-08T21:38:24,941         |                    ^
2023-09-08T21:38:24,942   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2023-09-08T21:38:24,942    1055 | XMLToken::setTriple(const XMLTriple& triple)
2023-09-08T21:38:24,943         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:25,224   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T21:38:25,224   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,225     312 |         if(&attributes == NULL)
2023-09-08T21:38:25,226         |         ^~
2023-09-08T21:38:25,227   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T21:38:25,228   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,229     783 |         if(&namespaces == NULL)
2023-09-08T21:38:25,229         |         ^~
2023-09-08T21:38:25,230   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T21:38:25,231   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,231     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:25,232         |            ^
2023-09-08T21:38:25,233   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,233     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T21:38:25,234         |                               ^
2023-09-08T21:38:25,235   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T21:38:25,235   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,236    1058 |         if(&triple == NULL)
2023-09-08T21:38:25,236         |         ^~
2023-09-08T21:38:25,253   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T21:38:25,254   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,255     132 |   if (&chars == NULL)
2023-09-08T21:38:25,255         |   ^~
2023-09-08T21:38:25,256   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T21:38:25,257   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,257     156 |   if (&orig == NULL)
2023-09-08T21:38:25,258         |   ^~
2023-09-08T21:38:25,259   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T21:38:25,260   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:25,260     195 |   if (&rhs == NULL)
2023-09-08T21:38:25,261         |   ^~
2023-09-08T21:38:29,698   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T21:38:29,699   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:38:29,700     188 |   if (&element == NULL) return;
2023-09-08T21:38:29,701         |                ^
2023-09-08T21:38:29,701   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2023-09-08T21:38:29,702     186 | XMLTokenizer::startElement (const XMLToken& element)
2023-09-08T21:38:29,703         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:38:29,704   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T21:38:29,705   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T21:38:29,705     234 |   else if (&element != NULL)
2023-09-08T21:38:29,706         |                     ^
2023-09-08T21:38:29,707   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2023-09-08T21:38:29,708     220 | XMLTokenizer::endElement (const XMLToken& element)
2023-09-08T21:38:29,708         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:38:29,709   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T21:38:29,710   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2023-09-08T21:38:29,710     247 |   if (&data == NULL) return;
2023-09-08T21:38:29,711         |             ^
2023-09-08T21:38:29,712   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2023-09-08T21:38:29,712     245 | XMLTokenizer::characters (const XMLToken& data)
2023-09-08T21:38:29,713         |                           ~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:30,044   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T21:38:30,045   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:30,045     188 |   if (&element == NULL) return;
2023-09-08T21:38:30,046         |   ^~
2023-09-08T21:38:30,047   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T21:38:30,048   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:30,048     234 |   else if (&element != NULL)
2023-09-08T21:38:30,048         |        ^~
2023-09-08T21:38:30,049   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T21:38:30,049   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:30,050     247 |   if (&data == NULL) return;
2023-09-08T21:38:30,050         |   ^~
2023-09-08T21:38:33,014   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:38:33,015   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T21:38:33,015      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T21:38:33,016         |              ^
2023-09-08T21:38:33,016   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2023-09-08T21:38:33,017      58 | XMLTriple::XMLTriple (  const std::string&  name
2023-09-08T21:38:33,017         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:33,018   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T21:38:33,019      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T21:38:33,019         |                                ^
2023-09-08T21:38:33,020   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2023-09-08T21:38:33,020      59 |                       , const std::string&  uri
2023-09-08T21:38:33,021         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:33,021   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T21:38:33,022      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T21:38:33,023         |                                                     ^
2023-09-08T21:38:33,023   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2023-09-08T21:38:33,024      60 |                       , const std::string&  prefix )
2023-09-08T21:38:33,024         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T21:38:33,026   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T21:38:33,026   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2023-09-08T21:38:33,027      81 |   if (&triplet == NULL)
2023-09-08T21:38:33,027         |                ^
2023-09-08T21:38:33,028   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2023-09-08T21:38:33,029      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2023-09-08T21:38:33,029         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T21:38:33,033   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T21:38:33,033   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T21:38:33,034     117 |   if (&orig == NULL)
2023-09-08T21:38:33,035         |             ^
2023-09-08T21:38:33,036   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2023-09-08T21:38:33,036     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2023-09-08T21:38:33,037         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T21:38:33,038   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T21:38:33,038   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T21:38:33,040     136 |   if (&rhs == NULL)
2023-09-08T21:38:33,040         |            ^
2023-09-08T21:38:33,041   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2023-09-08T21:38:33,041     134 | XMLTriple::operator=(const XMLTriple& rhs)
2023-09-08T21:38:33,042         |                      ~~~~~~~~~~~~~~~~~^~~
2023-09-08T21:38:33,234   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T21:38:33,235   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:33,236      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T21:38:33,236         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T21:38:33,237   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T21:38:33,238   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:33,238     117 |   if (&orig == NULL)
2023-09-08T21:38:33,239         |   ^~
2023-09-08T21:38:33,240   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T21:38:33,240   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:33,241     136 |   if (&rhs == NULL)
2023-09-08T21:38:33,242         |   ^~
2023-09-08T21:38:33,242   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T21:38:33,243   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2023-09-08T21:38:33,244      81 |   if (&triplet == NULL)
2023-09-08T21:38:33,244         |   ^~
2023-09-08T21:38:41,485   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-08T21:38:41,485   !!

2023-09-08T21:38:41,486           ********************************************************************************
2023-09-08T21:38:41,487           Please avoid running ``setup.py`` directly.
2023-09-08T21:38:41,487           Instead, use pypa/build, pypa/installer or other
2023-09-08T21:38:41,488           standards-based tools.

2023-09-08T21:38:41,489           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-08T21:38:41,490           ********************************************************************************

2023-09-08T21:38:41,491   !!
2023-09-08T21:38:41,492     self.initialize_options()
2023-09-08T21:38:59,908   Building wheel for python-libsbml (setup.py): finished with status 'done'
2023-09-08T21:39:00,278   Created wheel for python-libsbml: filename=python_libsbml-5.11.0-cp311-cp311-linux_armv7l.whl size=31127989 sha256=5ae5dd99af2d201f13782b0543529a6bd334514a35de6abfa1d680e7f5d1dc15
2023-09-08T21:39:00,279   Stored in directory: /tmp/pip-ephem-wheel-cache-kyxsfegb/wheels/0a/3b/ca/cfd1506c4fd7826f86f085700c08e907d01410ebeb541dff49
2023-09-08T21:39:00,297 Successfully built python-libsbml
2023-09-08T21:39:01,000 Removed build tracker: '/tmp/pip-build-tracker-j5pnpz5c'