2023-09-08T22:09:11,835 Created temporary directory: /tmp/pip-build-tracker-ktlyd1ev
2023-09-08T22:09:11,837 Initialized build tracking at /tmp/pip-build-tracker-ktlyd1ev
2023-09-08T22:09:11,838 Created build tracker: /tmp/pip-build-tracker-ktlyd1ev
2023-09-08T22:09:11,838 Entered build tracker: /tmp/pip-build-tracker-ktlyd1ev
2023-09-08T22:09:11,839 Created temporary directory: /tmp/pip-wheel-i2cb_008
2023-09-08T22:09:11,843 Created temporary directory: /tmp/pip-ephem-wheel-cache-3ezznp1s
2023-09-08T22:09:11,866 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T22:09:11,870 2 location(s) to search for versions of iva:
2023-09-08T22:09:11,870 * https://pypi.org/simple/iva/
2023-09-08T22:09:11,870 * https://www.piwheels.org/simple/iva/
2023-09-08T22:09:11,871 Fetching project page and analyzing links: https://pypi.org/simple/iva/
2023-09-08T22:09:11,872 Getting page https://pypi.org/simple/iva/
2023-09-08T22:09:11,873 Found index url https://pypi.org/simple/
2023-09-08T22:09:12,015 Fetched page https://pypi.org/simple/iva/ as application/vnd.pypi.simple.v1+json
2023-09-08T22:09:12,019   Found link https://files.pythonhosted.org/packages/c0/d5/cd9a1cd475fad181d9d4cfe04fb3e98f693249808e5c0156f5db25c4d6f8/iva-0.11.1.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.1
2023-09-08T22:09:12,020   Found link https://files.pythonhosted.org/packages/c4/5b/46d9978ec04f4579cf0251a7867ed9770b03dd0c0a101f0ccfd08aec09e0/iva-0.11.2.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.2
2023-09-08T22:09:12,020   Found link https://files.pythonhosted.org/packages/87/36/586387e486df150c3ee56e86138050af60d8564a426925cd0b125cf63d1d/iva-0.11.3.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.3
2023-09-08T22:09:12,021   Found link https://files.pythonhosted.org/packages/bd/92/5780cbd75bf3e9997aeb80289e1398f97cc54292ab0fd2646d729ff81a10/iva-0.11.4.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.4
2023-09-08T22:09:12,022   Found link https://files.pythonhosted.org/packages/8b/96/d062a8059431e21ab9a4d7eabd64127ee5ec3a4142901e0ebd5363fb0d40/iva-0.11.5.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.5
2023-09-08T22:09:12,022   Found link https://files.pythonhosted.org/packages/73/30/0855ccf30407b0b199cf0cc313e1c8f0ed5f58f7a7e4e76b1c2560acea0c/iva-0.11.6.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.6
2023-09-08T22:09:12,023   Found link https://files.pythonhosted.org/packages/70/d0/5171f8ddb17374f500528e501a44dfd4a89b03d35fbf55079a11dc4802a5/iva-0.11.7.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.7
2023-09-08T22:09:12,024   Found link https://files.pythonhosted.org/packages/36/3b/7debbe4fcbaa98b569aea8e017f75456d1e6ff60990db6564d72d56cc3d6/iva-1.0.0.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.0
2023-09-08T22:09:12,025   Found link https://files.pythonhosted.org/packages/51/7a/583cce3f6d7aa28f104a6d2c8271a19f8fccf512ecbeaf9086ab1e9709bb/iva-1.0.1.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.1
2023-09-08T22:09:12,026   Found link https://files.pythonhosted.org/packages/85/cd/700fc82fd658a5f03b325cb0c18dcde20d58941fec6943d4306c8da85545/iva-1.0.2.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.2
2023-09-08T22:09:12,026   Found link https://files.pythonhosted.org/packages/e5/16/1e5253a1f24cf1ab783811cd0b09e28630449347c0ccd9b2bdd3e68de644/iva-1.0.3.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.3
2023-09-08T22:09:12,027   Found link https://files.pythonhosted.org/packages/2f/9a/4eeb0316e8efc47d0783936521e493e752028c778dc3853015e3c4e8c63f/iva-1.0.4.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.4
2023-09-08T22:09:12,028   Found link https://files.pythonhosted.org/packages/d1/b1/21f598b41652b2c4bbcc3fb3ae4e869ada20d7b26b9294310bcef5d63f23/iva-1.0.5.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.5
2023-09-08T22:09:12,029   Found link https://files.pythonhosted.org/packages/3d/df/f8a1d735abea19137c9a940e90c171dd14415ad1b8add912ab9886ce98a1/iva-1.0.6.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.6
2023-09-08T22:09:12,029   Found link https://files.pythonhosted.org/packages/bf/02/7a0c43f68d755458ea1dd1f2e541144cc90bc767ab2e3369d8f0e8893262/iva-1.0.8.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.8
2023-09-08T22:09:12,030   Found link https://files.pythonhosted.org/packages/5a/f8/a8ea62d810a1d9a42d93c05d8de5605b607065ed3a4cf227ec737ddbd150/iva-1.0.9.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.9
2023-09-08T22:09:12,031 Fetching project page and analyzing links: https://www.piwheels.org/simple/iva/
2023-09-08T22:09:12,032 Getting page https://www.piwheels.org/simple/iva/
2023-09-08T22:09:12,033 Found index url https://www.piwheels.org/simple/
2023-09-08T22:09:12,297 Fetched page https://www.piwheels.org/simple/iva/ as text/html
2023-09-08T22:09:12,298 Skipping link: not a file: https://www.piwheels.org/simple/iva/
2023-09-08T22:09:12,299 Skipping link: not a file: https://pypi.org/simple/iva/
2023-09-08T22:09:12,319 Given no hashes to check 1 links for project 'iva': discarding no candidates
2023-09-08T22:09:12,337 Collecting iva==1.0.6
2023-09-08T22:09:12,339   Created temporary directory: /tmp/pip-unpack-8a37jiwx
2023-09-08T22:09:13,238   Downloading iva-1.0.6.tar.gz (8.6 MB)
2023-09-08T22:09:15,668   Added iva==1.0.6 from https://files.pythonhosted.org/packages/3d/df/f8a1d735abea19137c9a940e90c171dd14415ad1b8add912ab9886ce98a1/iva-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-ktlyd1ev'
2023-09-08T22:09:15,670   Running setup.py (path:/tmp/pip-wheel-i2cb_008/iva_2d15186c3e73491c854c1f31b4c4e5cb/setup.py) egg_info for package iva
2023-09-08T22:09:15,671   Created temporary directory: /tmp/pip-pip-egg-info-me69mxmg
2023-09-08T22:09:15,671   Preparing metadata (setup.py): started
2023-09-08T22:09:15,673   Running command python setup.py egg_info
2023-09-08T22:09:16,082   Cannot install because some dependencies not found.
2023-09-08T22:09:16,082   Checking dependencies found in path:
2023-09-08T22:09:16,083    NOT FOUND	kmc
2023-09-08T22:09:16,084    NOT FOUND	kmc_dump
2023-09-08T22:09:16,085    NOT FOUND	nucmer
2023-09-08T22:09:16,086    NOT FOUND	delta-filter
2023-09-08T22:09:16,087    NOT FOUND	show-coords
2023-09-08T22:09:16,088    NOT FOUND	samtools
2023-09-08T22:09:16,089    NOT FOUND	smalt
2023-09-08T22:09:16,154   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T22:09:16,166   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T22:09:16,166   exec(compile('"'"''"'"''"'"'
2023-09-08T22:09:16,166   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T22:09:16,166   #
2023-09-08T22:09:16,166   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T22:09:16,166   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T22:09:16,166   # - It provides a clear error message when setuptools is not installed.
2023-09-08T22:09:16,166   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T22:09:16,166   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T22:09:16,166   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T22:09:16,166   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T22:09:16,166   import os, sys, tokenize
2023-09-08T22:09:16,166   
2023-09-08T22:09:16,166   try:
2023-09-08T22:09:16,166       import setuptools
2023-09-08T22:09:16,166   except ImportError as error:
2023-09-08T22:09:16,166       print(
2023-09-08T22:09:16,166           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T22:09:16,166           "the build environment.",
2023-09-08T22:09:16,166           file=sys.stderr,
2023-09-08T22:09:16,166       )
2023-09-08T22:09:16,166       sys.exit(1)
2023-09-08T22:09:16,166   
2023-09-08T22:09:16,166   __file__ = %r
2023-09-08T22:09:16,166   sys.argv[0] = __file__
2023-09-08T22:09:16,166   
2023-09-08T22:09:16,166   if os.path.exists(__file__):
2023-09-08T22:09:16,166       filename = __file__
2023-09-08T22:09:16,166       with tokenize.open(__file__) as f:
2023-09-08T22:09:16,166           setup_py_code = f.read()
2023-09-08T22:09:16,166   else:
2023-09-08T22:09:16,166       filename = "<auto-generated setuptools caller>"
2023-09-08T22:09:16,166       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T22:09:16,166   
2023-09-08T22:09:16,166   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T22:09:16,166   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-i2cb_008/iva_2d15186c3e73491c854c1f31b4c4e5cb/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-me69mxmg[/]
2023-09-08T22:09:16,167   [bold magenta]cwd[/]: /tmp/pip-wheel-i2cb_008/iva_2d15186c3e73491c854c1f31b4c4e5cb/
2023-09-08T22:09:16,168   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T22:09:16,169 ERROR: [present-rich] metadata generation failed
2023-09-08T22:09:16,175 Exception information:
2023-09-08T22:09:16,175 Traceback (most recent call last):
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T22:09:16,175     call_subprocess(
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T22:09:16,175     raise error
2023-09-08T22:09:16,175 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T22:09:16,175 
2023-09-08T22:09:16,175 The above exception was the direct cause of the following exception:
2023-09-08T22:09:16,175 
2023-09-08T22:09:16,175 Traceback (most recent call last):
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T22:09:16,175     status = run_func(*args)
2023-09-08T22:09:16,175              ^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T22:09:16,175     return func(self, options, args)
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T22:09:16,175     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T22:09:16,175                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T22:09:16,175     result = self._result = resolver.resolve(
2023-09-08T22:09:16,175                             ^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T22:09:16,175     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T22:09:16,175             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T22:09:16,175     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T22:09:16,175     if not criterion.candidates:
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T22:09:16,175     return bool(self._sequence)
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T22:09:16,175     return any(self)
2023-09-08T22:09:16,175            ^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T22:09:16,175     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T22:09:16,175     candidate = func()
2023-09-08T22:09:16,175                 ^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T22:09:16,175     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T22:09:16,175                                        ^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T22:09:16,175     super().__init__(
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T22:09:16,175     self.dist = self._prepare()
2023-09-08T22:09:16,175                 ^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T22:09:16,175     dist = self._prepare_distribution()
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T22:09:16,175     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T22:09:16,175     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T22:09:16,175     dist = _get_prepared_distribution(
2023-09-08T22:09:16,175            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T22:09:16,175     abstract_dist.prepare_distribution_metadata(
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T22:09:16,175     self.req.prepare_metadata()
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T22:09:16,175     self.metadata_directory = generate_metadata_legacy(
2023-09-08T22:09:16,175                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T22:09:16,175   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T22:09:16,175     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T22:09:16,175 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T22:09:16,187 Removed iva==1.0.6 from https://files.pythonhosted.org/packages/3d/df/f8a1d735abea19137c9a940e90c171dd14415ad1b8add912ab9886ce98a1/iva-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-ktlyd1ev'
2023-09-08T22:09:16,188 Removed build tracker: '/tmp/pip-build-tracker-ktlyd1ev'