2023-09-09T12:22:12,876 Created temporary directory: /tmp/pip-build-tracker-ooumwp72 2023-09-09T12:22:12,877 Initialized build tracking at /tmp/pip-build-tracker-ooumwp72 2023-09-09T12:22:12,877 Created build tracker: /tmp/pip-build-tracker-ooumwp72 2023-09-09T12:22:12,878 Entered build tracker: /tmp/pip-build-tracker-ooumwp72 2023-09-09T12:22:12,878 Created temporary directory: /tmp/pip-wheel-_ojepk8z 2023-09-09T12:22:12,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-3ir05lll 2023-09-09T12:22:12,903 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-09T12:22:12,906 2 location(s) to search for versions of parmed: 2023-09-09T12:22:12,906 * https://pypi.org/simple/parmed/ 2023-09-09T12:22:12,906 * https://www.piwheels.org/simple/parmed/ 2023-09-09T12:22:12,907 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-09T12:22:12,908 Getting page https://pypi.org/simple/parmed/ 2023-09-09T12:22:12,909 Found index url https://pypi.org/simple/ 2023-09-09T12:22:13,122 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-09T12:22:13,126 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-09T12:22:13,126 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-09T12:22:13,127 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-09T12:22:13,128 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-09T12:22:13,128 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-09T12:22:13,129 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-09T12:22:13,130 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-09T12:22:13,131 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-09T12:22:13,131 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-09T12:22:13,133 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-09T12:22:13,133 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-09T12:22:13,134 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-09T12:22:13,135 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-09T12:22:13,135 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-09T12:22:13,136 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-09T12:22:13,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-09T12:22:13,138 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-09T12:22:13,139 Found index url https://www.piwheels.org/simple/ 2023-09-09T12:22:13,554 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-09T12:22:13,606 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,680 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,681 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,681 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,682 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,683 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-09T12:22:13,683 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-09T12:22:13,684 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-09T12:22:13,704 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-09T12:22:13,722 Collecting parmed==2.7.3 2023-09-09T12:22:13,725 Created temporary directory: /tmp/pip-unpack-m_2cutxl 2023-09-09T12:22:13,943 Downloading ParmEd-2.7.3.tar.gz (2.8 MB) 2023-09-09T12:22:16,008 Added parmed==2.7.3 from https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz to build tracker '/tmp/pip-build-tracker-ooumwp72' 2023-09-09T12:22:16,010 Running setup.py (path:/tmp/pip-wheel-_ojepk8z/parmed_80a3c3352f42499c8519920a1ecc1d01/setup.py) egg_info for package parmed 2023-09-09T12:22:16,012 Created temporary directory: /tmp/pip-pip-egg-info-79y3mo9p 2023-09-09T12:22:16,012 Preparing metadata (setup.py): started 2023-09-09T12:22:16,014 Running command python setup.py egg_info 2023-09-09T12:22:17,122 running egg_info 2023-09-09T12:22:17,124 creating /tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info 2023-09-09T12:22:17,149 writing /tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/PKG-INFO 2023-09-09T12:22:17,152 writing dependency_links to /tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/dependency_links.txt 2023-09-09T12:22:17,153 writing entry points to /tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/entry_points.txt 2023-09-09T12:22:17,155 writing top-level names to /tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/top_level.txt 2023-09-09T12:22:17,157 writing manifest file '/tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/SOURCES.txt' 2023-09-09T12:22:17,229 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-09T12:22:17,253 reading manifest file '/tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/SOURCES.txt' 2023-09-09T12:22:17,254 reading manifest template 'MANIFEST.in' 2023-09-09T12:22:17,296 writing manifest file '/tmp/pip-pip-egg-info-79y3mo9p/ParmEd.egg-info/SOURCES.txt' 2023-09-09T12:22:17,410 Preparing metadata (setup.py): finished with status 'done' 2023-09-09T12:22:17,413 Source in /tmp/pip-wheel-_ojepk8z/parmed_80a3c3352f42499c8519920a1ecc1d01 has version 2.7.3, which satisfies requirement parmed==2.7.3 from https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz 2023-09-09T12:22:17,414 Removed parmed==2.7.3 from https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz from build tracker '/tmp/pip-build-tracker-ooumwp72' 2023-09-09T12:22:17,418 Created temporary directory: /tmp/pip-unpack-zwuf0svm 2023-09-09T12:22:17,419 Created temporary directory: /tmp/pip-unpack-250v0em9 2023-09-09T12:22:17,421 Building wheels for collected packages: parmed 2023-09-09T12:22:17,425 Created temporary directory: /tmp/pip-wheel-4z28ilyp 2023-09-09T12:22:17,426 Building wheel for parmed (setup.py): started 2023-09-09T12:22:17,427 Destination directory: /tmp/pip-wheel-4z28ilyp 2023-09-09T12:22:17,428 Running command python setup.py bdist_wheel 2023-09-09T12:22:18,458 running bdist_wheel 2023-09-09T12:22:18,552 running build 2023-09-09T12:22:18,553 running build_py 2023-09-09T12:22:18,557 creating build 2023-09-09T12:22:18,558 creating build/lib.linux-armv7l-cpython-311 2023-09-09T12:22:18,558 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,559 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,562 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,564 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,566 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,567 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,569 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,571 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,576 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,578 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,580 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,585 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,588 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,590 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-09T12:22:18,593 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,593 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,596 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,600 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,603 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,605 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,608 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,610 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,613 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,614 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,617 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,619 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,622 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-09T12:22:18,624 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-09T12:22:18,625 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-09T12:22:18,628 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-09T12:22:18,629 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-09T12:22:18,632 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,632 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,635 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,637 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,640 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,642 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-09T12:22:18,645 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,646 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,648 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,650 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,652 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,654 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,656 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,658 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,661 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,663 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,665 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,667 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,669 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-09T12:22:18,671 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,672 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,674 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,675 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,677 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,679 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,681 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-09T12:22:18,684 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,684 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,687 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,690 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,692 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,694 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-09T12:22:18,696 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,697 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-09T12:22:18,698 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-09T12:22:18,699 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-09T12:22:18,702 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-09T12:22:18,704 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-09T12:22:18,707 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-09T12:22:18,708 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-09T12:22:18,709 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-09T12:22:18,712 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-09T12:22:18,712 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-09T12:22:18,714 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-09T12:22:18,716 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,719 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,721 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,723 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,725 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,728 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,730 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-09T12:22:18,733 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,733 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,734 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,737 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,738 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,740 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,742 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,744 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,746 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,748 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,749 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,751 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,753 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-09T12:22:18,756 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,756 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,758 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,761 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,763 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,765 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,768 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-09T12:22:18,770 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,772 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,774 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,777 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,779 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,781 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,783 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,785 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-09T12:22:18,787 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,788 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,792 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,794 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,795 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,797 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-09T12:22:18,800 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,801 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,804 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,806 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,808 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,810 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,812 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,814 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,817 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,819 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,821 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,826 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,828 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-09T12:22:18,830 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-09T12:22:18,831 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-09T12:22:18,832 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-09T12:22:18,834 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,835 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,837 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,840 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,842 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,844 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,846 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-09T12:22:18,848 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-09T12:22:18,849 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-09T12:22:18,852 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-09T12:22:18,854 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-09T12:22:18,858 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-09T12:22:18,859 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-09T12:22:18,872 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-09T12:22:18,873 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '2.7.3' 2023-09-09T12:22:18,874 running build_ext 2023-09-09T12:22:19,382 building 'parmed.amber._rdparm' extension 2023-09-09T12:22:19,383 creating build/temp.linux-armv7l-cpython-311 2023-09-09T12:22:19,383 creating build/temp.linux-armv7l-cpython-311/src 2023-09-09T12:22:19,384 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-_ojepk8z/parmed_80a3c3352f42499c8519920a1ecc1d01/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-09T12:22:25,037 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-_ojepk8z/parmed_80a3c3352f42499c8519920a1ecc1d01/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-09T12:22:28,248 In file included from /usr/include/c++/12/vector:70, 2023-09-09T12:22:28,249 from src/readparm.h:8, 2023-09-09T12:22:28,250 from src/readparm.cpp:10: 2023-09-09T12:22:28,251 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-09T12:22:28,251 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-09T12:22:28,252 439 | vector<_Tp, _Alloc>:: 2023-09-09T12:22:28,253 | ^~~~~~~~~~~~~~~~~~~ 2023-09-09T12:22:29,344 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-09T12:22:29,345 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-09T12:22:29,346 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-09T12:22:29,346 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-09T12:22:29,473 In file included from /usr/include/c++/12/vector:64: 2023-09-09T12:22:29,473 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-09T12:22:29,474 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-09T12:22:29,475 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-09T12:22:29,475 1287 | _M_realloc_insert(end(), __x); 2023-09-09T12:22:29,476 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-09T12:22:29,477 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-09T12:22:29,477 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-09T12:22:29,478 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-09T12:22:29,478 1287 | _M_realloc_insert(end(), __x); 2023-09-09T12:22:29,479 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-09T12:22:29,480 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-09T12:22:29,481 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-09T12:22:29,481 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-09T12:22:29,482 1287 | _M_realloc_insert(end(), __x); 2023-09-09T12:22:29,483 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-09T12:22:31,245 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-09T12:22:31,544 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-09T12:22:31,545 !! 2023-09-09T12:22:31,546 ******************************************************************************** 2023-09-09T12:22:31,547 Please avoid running ``setup.py`` directly. 2023-09-09T12:22:31,547 Instead, use pypa/build, pypa/installer or other 2023-09-09T12:22:31,548 standards-based tools. 2023-09-09T12:22:31,549 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-09T12:22:31,549 ******************************************************************************** 2023-09-09T12:22:31,550 !! 2023-09-09T12:22:31,551 self.initialize_options() 2023-09-09T12:22:31,575 installing to build/bdist.linux-armv7l/wheel 2023-09-09T12:22:31,575 running install 2023-09-09T12:22:31,599 running install_lib 2023-09-09T12:22:31,624 creating build/bdist.linux-armv7l 2023-09-09T12:22:31,625 creating build/bdist.linux-armv7l/wheel 2023-09-09T12:22:31,841 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:31,843 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,844 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,848 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,850 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,853 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,857 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,860 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,864 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,870 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,873 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,876 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,880 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,883 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-09T12:22:31,886 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,888 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,889 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,893 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,895 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,898 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,901 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,903 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,906 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,909 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,911 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,913 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,917 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-09T12:22:31,919 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,922 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,926 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,929 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,932 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,934 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,938 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,940 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-09T12:22:31,942 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:31,946 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:31,948 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-09T12:22:31,949 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-09T12:22:31,952 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-09T12:22:31,955 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-09T12:22:31,956 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-09T12:22:31,958 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-09T12:22:31,960 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:31,964 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,965 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,969 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,972 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,974 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,977 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,982 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,985 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-09T12:22:31,988 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-09T12:22:31,989 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-09T12:22:31,992 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-09T12:22:31,995 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-09T12:22:31,998 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-09T12:22:32,001 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,003 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,005 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,007 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,013 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,016 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,017 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,019 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,022 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,024 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,027 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,030 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-09T12:22:32,032 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,034 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-09T12:22:32,035 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-09T12:22:32,037 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-09T12:22:32,039 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,040 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,044 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,048 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,051 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,054 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,057 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,060 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,063 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,065 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,068 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,069 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,072 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,075 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,078 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,080 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,083 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-09T12:22:32,086 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,089 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,105 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,107 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-09T12:22:32,109 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,114 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,115 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,118 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,121 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,123 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,125 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-09T12:22:32,128 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,129 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,131 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,134 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,136 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,138 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-09T12:22:32,141 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-09T12:22:32,142 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-09T12:22:32,145 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-09T12:22:32,146 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-09T12:22:32,150 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-09T12:22:32,152 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-09T12:22:32,154 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,155 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,158 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,159 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,162 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,165 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,167 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,168 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,170 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-09T12:22:32,172 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,174 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,176 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,178 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,180 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,182 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,185 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-09T12:22:32,186 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-09T12:22:32,189 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-09T12:22:32,191 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-09T12:22:32,193 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,195 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,197 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,202 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,204 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-09T12:22:32,206 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,208 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,209 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,213 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,215 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,217 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,219 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-09T12:22:32,221 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,223 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-09T12:22:32,225 running install_egg_info 2023-09-09T12:22:32,285 running egg_info 2023-09-09T12:22:32,308 writing ParmEd.egg-info/PKG-INFO 2023-09-09T12:22:32,310 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-09T12:22:32,312 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-09T12:22:32,313 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-09T12:22:32,348 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-09T12:22:32,371 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-09T12:22:32,413 reading manifest template 'MANIFEST.in' 2023-09-09T12:22:32,456 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-09T12:22:32,458 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-2.7.3-py3.11.egg-info 2023-09-09T12:22:32,467 running install_scripts 2023-09-09T12:22:32,517 creating build/bdist.linux-armv7l/wheel/ParmEd-2.7.3.dist-info/WHEEL 2023-09-09T12:22:32,519 creating '/tmp/pip-wheel-4z28ilyp/ParmEd-2.7.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-09T12:22:32,523 adding 'parmed/__init__.py' 2023-09-09T12:22:32,524 adding 'parmed/_version.py' 2023-09-09T12:22:32,529 adding 'parmed/constants.py' 2023-09-09T12:22:32,530 adding 'parmed/exceptions.py' 2023-09-09T12:22:32,532 adding 'parmed/geometry.py' 2023-09-09T12:22:32,535 adding 'parmed/parameters.py' 2023-09-09T12:22:32,538 adding 'parmed/periodic_table.py' 2023-09-09T12:22:32,540 adding 'parmed/residue.py' 2023-09-09T12:22:32,543 adding 'parmed/scripts.py' 2023-09-09T12:22:32,562 adding 'parmed/structure.py' 2023-09-09T12:22:32,565 adding 'parmed/symmetry.py' 2023-09-09T12:22:32,585 adding 'parmed/topologyobjects.py' 2023-09-09T12:22:32,588 adding 'parmed/vec3.py' 2023-09-09T12:22:32,590 adding 'parmed/amber/__init__.py' 2023-09-09T12:22:32,600 adding 'parmed/amber/_amberparm.py' 2023-09-09T12:22:32,605 adding 'parmed/amber/_chamberparm.py' 2023-09-09T12:22:32,765 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T12:22:32,777 adding 'parmed/amber/_tinkerparm.py' 2023-09-09T12:22:32,781 adding 'parmed/amber/amberformat.py' 2023-09-09T12:22:32,785 adding 'parmed/amber/asciicrd.py' 2023-09-09T12:22:32,788 adding 'parmed/amber/mask.py' 2023-09-09T12:22:32,791 adding 'parmed/amber/netcdffiles.py' 2023-09-09T12:22:32,794 adding 'parmed/amber/offlib.py' 2023-09-09T12:22:32,798 adding 'parmed/amber/parameters.py' 2023-09-09T12:22:32,800 adding 'parmed/amber/readparm.py' 2023-09-09T12:22:32,804 adding 'parmed/amber/titratable_residues.py' 2023-09-09T12:22:32,806 adding 'parmed/amber/mdin/__init__.py' 2023-09-09T12:22:32,808 adding 'parmed/amber/mdin/cntrl.py' 2023-09-09T12:22:32,809 adding 'parmed/amber/mdin/ewald.py' 2023-09-09T12:22:32,812 adding 'parmed/amber/mdin/mdin.py' 2023-09-09T12:22:32,813 adding 'parmed/amber/mdin/pb.py' 2023-09-09T12:22:32,815 adding 'parmed/amber/mdin/qmmm.py' 2023-09-09T12:22:32,817 adding 'parmed/charmm/__init__.py' 2023-09-09T12:22:32,819 adding 'parmed/charmm/_charmmfile.py' 2023-09-09T12:22:32,821 adding 'parmed/charmm/charmmcrds.py' 2023-09-09T12:22:32,826 adding 'parmed/charmm/parameters.py' 2023-09-09T12:22:32,830 adding 'parmed/charmm/psf.py' 2023-09-09T12:22:32,833 adding 'parmed/formats/__init__.py' 2023-09-09T12:22:32,836 adding 'parmed/formats/mol2.py' 2023-09-09T12:22:32,843 adding 'parmed/formats/pdb.py' 2023-09-09T12:22:32,846 adding 'parmed/formats/pqr.py' 2023-09-09T12:22:32,848 adding 'parmed/formats/psf.py' 2023-09-09T12:22:32,850 adding 'parmed/formats/registry.py' 2023-09-09T12:22:32,852 adding 'parmed/formats/sdf.py' 2023-09-09T12:22:32,855 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-09T12:22:32,858 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-09T12:22:32,860 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-09T12:22:32,861 adding 'parmed/formats/pdbx/__init__.py' 2023-09-09T12:22:32,863 adding 'parmed/gromacs/__init__.py' 2023-09-09T12:22:32,865 adding 'parmed/gromacs/_cpp.py' 2023-09-09T12:22:32,866 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-09T12:22:32,868 adding 'parmed/gromacs/gromacsgro.py' 2023-09-09T12:22:32,878 adding 'parmed/gromacs/gromacstop.py' 2023-09-09T12:22:32,880 adding 'parmed/modeller/__init__.py' 2023-09-09T12:22:32,883 adding 'parmed/modeller/residue.py' 2023-09-09T12:22:32,885 adding 'parmed/modeller/standardtemplates.py' 2023-09-09T12:22:32,894 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-09T12:22:32,896 adding 'parmed/namd/__init__.py' 2023-09-09T12:22:32,898 adding 'parmed/namd/namdbinfiles.py' 2023-09-09T12:22:32,899 adding 'parmed/openmm/__init__.py' 2023-09-09T12:22:32,902 adding 'parmed/openmm/parameters.py' 2023-09-09T12:22:32,906 adding 'parmed/openmm/reporters.py' 2023-09-09T12:22:32,909 adding 'parmed/openmm/topsystem.py' 2023-09-09T12:22:32,911 adding 'parmed/openmm/utils.py' 2023-09-09T12:22:32,912 adding 'parmed/openmm/xmlfile.py' 2023-09-09T12:22:32,914 adding 'parmed/rdkit/__init__.py' 2023-09-09T12:22:32,916 adding 'parmed/rdkit/rdkit.py' 2023-09-09T12:22:32,917 adding 'parmed/rosetta/__init__.py' 2023-09-09T12:22:32,919 adding 'parmed/rosetta/pose.py' 2023-09-09T12:22:32,920 adding 'parmed/tinker/__init__.py' 2023-09-09T12:22:32,923 adding 'parmed/tinker/parameterfile.py' 2023-09-09T12:22:32,925 adding 'parmed/tinker/system.py' 2023-09-09T12:22:32,927 adding 'parmed/tinker/tinkerfiles.py' 2023-09-09T12:22:32,929 adding 'parmed/tinker/topologyobjects.py' 2023-09-09T12:22:32,931 adding 'parmed/tools/__init__.py' 2023-09-09T12:22:32,952 adding 'parmed/tools/actions.py' 2023-09-09T12:22:32,955 adding 'parmed/tools/add1264.py' 2023-09-09T12:22:32,956 adding 'parmed/tools/addljtype.py' 2023-09-09T12:22:32,958 adding 'parmed/tools/argumentlist.py' 2023-09-09T12:22:32,959 adding 'parmed/tools/changeradii.py' 2023-09-09T12:22:32,962 adding 'parmed/tools/checkvalidity.py' 2023-09-09T12:22:32,964 adding 'parmed/tools/coarsegrain.py' 2023-09-09T12:22:32,965 adding 'parmed/tools/exceptions.py' 2023-09-09T12:22:32,968 adding 'parmed/tools/logos.py' 2023-09-09T12:22:32,970 adding 'parmed/tools/parmed_cmd.py' 2023-09-09T12:22:32,972 adding 'parmed/tools/parmlist.py' 2023-09-09T12:22:32,973 adding 'parmed/tools/gui/__init__.py' 2023-09-09T12:22:32,977 adding 'parmed/tools/gui/_guiactions.py' 2023-09-09T12:22:32,980 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-09T12:22:32,981 adding 'parmed/tools/gui/guiactions.py' 2023-09-09T12:22:32,982 adding 'parmed/tools/gui/guifiletools.py' 2023-09-09T12:22:32,984 adding 'parmed/tools/gui/guitools.py' 2023-09-09T12:22:32,986 adding 'parmed/tools/simulations/__init__.py' 2023-09-09T12:22:32,991 adding 'parmed/tools/simulations/openmm.py' 2023-09-09T12:22:32,992 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-09T12:22:32,994 adding 'parmed/unit/__init__.py' 2023-09-09T12:22:32,996 adding 'parmed/unit/basedimension.py' 2023-09-09T12:22:32,998 adding 'parmed/unit/baseunit.py' 2023-09-09T12:22:32,999 adding 'parmed/unit/constants.py' 2023-09-09T12:22:33,001 adding 'parmed/unit/mymatrix.py' 2023-09-09T12:22:33,003 adding 'parmed/unit/prefix.py' 2023-09-09T12:22:33,007 adding 'parmed/unit/quantity.py' 2023-09-09T12:22:33,008 adding 'parmed/unit/standard_dimensions.py' 2023-09-09T12:22:33,011 adding 'parmed/unit/unit.py' 2023-09-09T12:22:33,014 adding 'parmed/unit/unit_definitions.py' 2023-09-09T12:22:33,015 adding 'parmed/unit/unit_math.py' 2023-09-09T12:22:33,017 adding 'parmed/unit/unit_operators.py' 2023-09-09T12:22:33,019 adding 'parmed/utils/__init__.py' 2023-09-09T12:22:33,020 adding 'parmed/utils/decorators.py' 2023-09-09T12:22:33,022 adding 'parmed/utils/io.py' 2023-09-09T12:22:33,026 adding 'parmed/utils/netcdf.py' 2023-09-09T12:22:33,028 adding 'parmed/utils/pairlist.py' 2023-09-09T12:22:33,030 adding 'parmed/utils/pandautils.py' 2023-09-09T12:22:33,033 adding 'parmed/utils/six.py' 2023-09-09T12:22:33,035 adding 'parmed/utils/timer.py' 2023-09-09T12:22:33,036 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-09T12:22:33,038 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-09T12:22:33,039 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-09T12:22:33,040 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-09T12:22:33,041 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-09T12:22:33,043 adding 'parmed/utils/fortranformat/_input.py' 2023-09-09T12:22:33,045 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-09T12:22:33,046 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-09T12:22:33,049 adding 'parmed/utils/fortranformat/_output.py' 2023-09-09T12:22:33,051 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-09T12:22:33,052 adding 'parmed/utils/fortranformat/config.py' 2023-09-09T12:22:33,053 adding 'ParmEd-2.7.3.dist-info/METADATA' 2023-09-09T12:22:33,054 adding 'ParmEd-2.7.3.dist-info/WHEEL' 2023-09-09T12:22:33,055 adding 'ParmEd-2.7.3.dist-info/entry_points.txt' 2023-09-09T12:22:33,056 adding 'ParmEd-2.7.3.dist-info/top_level.txt' 2023-09-09T12:22:33,058 adding 'ParmEd-2.7.3.dist-info/RECORD' 2023-09-09T12:22:33,072 removing build/bdist.linux-armv7l/wheel 2023-09-09T12:22:33,255 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-09T12:22:33,268 Created wheel for parmed: filename=ParmEd-2.7.3-cp311-cp311-linux_armv7l.whl size=849493 sha256=2cc24a822f33040cfe0113f8748e6411a82b23de428e7fb142315d0cfbc7569d 2023-09-09T12:22:33,269 Stored in directory: /tmp/pip-ephem-wheel-cache-3ir05lll/wheels/16/1c/60/bf7d990b6c3f9b2e603d2217af766b40b8fd395d7049329ef5 2023-09-09T12:22:33,281 Successfully built parmed 2023-09-09T12:22:33,305 Removed build tracker: '/tmp/pip-build-tracker-ooumwp72'