2023-09-09T12:26:22,560 Created temporary directory: /tmp/pip-build-tracker-m7pi68df 2023-09-09T12:26:22,561 Initialized build tracking at /tmp/pip-build-tracker-m7pi68df 2023-09-09T12:26:22,562 Created build tracker: /tmp/pip-build-tracker-m7pi68df 2023-09-09T12:26:22,562 Entered build tracker: /tmp/pip-build-tracker-m7pi68df 2023-09-09T12:26:22,563 Created temporary directory: /tmp/pip-wheel-uf9ffwxk 2023-09-09T12:26:22,566 Created temporary directory: /tmp/pip-ephem-wheel-cache-to5z2w6t 2023-09-09T12:26:22,593 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-09T12:26:22,596 2 location(s) to search for versions of mikado: 2023-09-09T12:26:22,596 * https://pypi.org/simple/mikado/ 2023-09-09T12:26:22,596 * https://www.piwheels.org/simple/mikado/ 2023-09-09T12:26:22,597 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2023-09-09T12:26:22,598 Getting page https://pypi.org/simple/mikado/ 2023-09-09T12:26:22,599 Found index url https://pypi.org/simple/ 2023-09-09T12:26:22,739 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2023-09-09T12:26:22,745 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2023-09-09T12:26:22,745 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2023-09-09T12:26:22,746 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2023-09-09T12:26:22,747 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2023-09-09T12:26:22,748 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2023-09-09T12:26:22,748 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2023-09-09T12:26:22,749 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2023-09-09T12:26:22,750 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2023-09-09T12:26:22,751 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2023-09-09T12:26:22,751 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2023-09-09T12:26:22,752 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2023-09-09T12:26:22,753 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2023-09-09T12:26:22,754 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2023-09-09T12:26:22,755 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2023-09-09T12:26:22,756 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2023-09-09T12:26:22,757 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2023-09-09T12:26:22,758 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2023-09-09T12:26:22,759 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2023-09-09T12:26:22,760 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2023-09-09T12:26:22,761 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2023-09-09T12:26:22,762 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2023-09-09T12:26:22,762 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2023-09-09T12:26:22,763 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2023-09-09T12:26:22,764 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2023-09-09T12:26:22,765 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2023-09-09T12:26:22,766 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2023-09-09T12:26:22,767 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2023-09-09T12:26:22,768 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2023-09-09T12:26:22,769 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2023-09-09T12:26:22,769 Getting page https://www.piwheels.org/simple/mikado/ 2023-09-09T12:26:22,771 Found index url https://www.piwheels.org/simple/ 2023-09-09T12:26:25,965 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2023-09-09T12:26:26,028 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,029 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,030 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,031 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,031 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,032 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,033 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,034 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,034 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,035 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,036 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,036 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,037 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,038 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,039 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,039 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,040 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,041 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,041 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,042 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,043 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,043 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,044 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,045 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,045 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,046 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,047 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,047 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T12:26:26,048 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2023-09-09T12:26:26,049 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,082 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,083 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,084 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,084 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,087 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,088 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,089 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,090 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,090 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,091 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,091 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,092 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,093 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,093 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,094 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,097 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,098 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,098 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,099 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,102 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,102 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,103 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,104 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,105 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,105 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,106 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,107 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,107 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,108 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,109 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,109 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T12:26:26,110 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2023-09-09T12:26:26,111 Skipping link: not a file: https://pypi.org/simple/mikado/ 2023-09-09T12:26:26,133 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2023-09-09T12:26:26,151 Collecting mikado==1.0.0b10 2023-09-09T12:26:26,153 Created temporary directory: /tmp/pip-unpack-l7z152dh 2023-09-09T12:26:26,385 Downloading Mikado-1.0.0b10.tar.gz (17.2 MB) 2023-09-09T12:26:31,972 Added mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz to build tracker '/tmp/pip-build-tracker-m7pi68df' 2023-09-09T12:26:31,974 Running setup.py (path:/tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43/setup.py) egg_info for package mikado 2023-09-09T12:26:31,975 Created temporary directory: /tmp/pip-pip-egg-info-gy2lkq62 2023-09-09T12:26:31,975 Preparing metadata (setup.py): started 2023-09-09T12:26:31,976 Running command python setup.py egg_info 2023-09-09T12:26:34,215 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43/Mikado/scales/contrast.pxd 2023-09-09T12:26:34,215 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T12:26:35,038 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43/Mikado/scales/f1.pxd 2023-09-09T12:26:35,039 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T12:26:35,129 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43/Mikado/utilities/intervaltree.pyx 2023-09-09T12:26:35,130 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T12:26:36,169 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43/Mikado/utilities/overlap.pxd 2023-09-09T12:26:36,170 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T12:26:36,300 Compiling Mikado/utilities/overlap.pyx because it changed. 2023-09-09T12:26:36,300 Compiling Mikado/scales/f1.pyx because it changed. 2023-09-09T12:26:36,301 Compiling Mikado/scales/contrast.pyx because it changed. 2023-09-09T12:26:36,302 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2023-09-09T12:26:36,302 [1/4] Cythonizing Mikado/scales/contrast.pyx 2023-09-09T12:26:36,303 [2/4] Cythonizing Mikado/scales/f1.pyx 2023-09-09T12:26:36,303 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2023-09-09T12:26:36,304 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2023-09-09T12:26:36,775 running egg_info 2023-09-09T12:26:36,777 creating /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info 2023-09-09T12:26:36,801 writing /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/PKG-INFO 2023-09-09T12:26:36,806 writing dependency_links to /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/dependency_links.txt 2023-09-09T12:26:36,808 writing entry points to /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/entry_points.txt 2023-09-09T12:26:36,811 writing requirements to /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/requires.txt 2023-09-09T12:26:36,812 writing top-level names to /tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/top_level.txt 2023-09-09T12:26:36,813 writing manifest file '/tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/SOURCES.txt' 2023-09-09T12:26:36,950 reading manifest file '/tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/SOURCES.txt' 2023-09-09T12:26:36,952 reading manifest template 'MANIFEST.in' 2023-09-09T12:26:37,552 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-09T12:26:37,553 adding license file 'AUTHORS' 2023-09-09T12:26:37,572 writing manifest file '/tmp/pip-pip-egg-info-gy2lkq62/Mikado.egg-info/SOURCES.txt' 2023-09-09T12:26:37,868 Preparing metadata (setup.py): finished with status 'done' 2023-09-09T12:26:37,871 Source in /tmp/pip-wheel-uf9ffwxk/mikado_73472c070f704d7091ce4edf434bbf43 has version 1.0.0b10, which satisfies requirement mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz 2023-09-09T12:26:37,872 Removed mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz from build tracker '/tmp/pip-build-tracker-m7pi68df' 2023-09-09T12:26:37,877 Created temporary directory: /tmp/pip-unpack-xsehpi5f 2023-09-09T12:26:37,878 Created temporary directory: /tmp/pip-unpack-31fegjb4 2023-09-09T12:26:37,909 Building wheels for collected packages: mikado 2023-09-09T12:26:37,913 Created temporary directory: /tmp/pip-wheel-je3btqsi 2023-09-09T12:26:37,914 Building wheel for mikado (setup.py): started 2023-09-09T12:26:37,915 Destination directory: /tmp/pip-wheel-je3btqsi 2023-09-09T12:26:37,915 Running command python setup.py bdist_wheel 2023-09-09T12:26:39,649 running bdist_wheel 2023-09-09T12:26:39,746 running build 2023-09-09T12:26:39,747 running build_py 2023-09-09T12:26:39,773 creating build/lib.linux-armv7l-cpython-311 2023-09-09T12:26:39,774 creating build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T12:26:39,775 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T12:26:39,777 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T12:26:39,780 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T12:26:39,781 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T12:26:39,783 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T12:26:39,785 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T12:26:39,789 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T12:26:39,792 creating build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,793 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,797 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,799 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,801 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,804 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,806 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:39,809 creating build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T12:26:39,810 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T12:26:39,814 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T12:26:39,817 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T12:26:39,819 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T12:26:39,820 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T12:26:39,822 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T12:26:39,824 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T12:26:39,827 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T12:26:39,830 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,831 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,833 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,836 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,837 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,840 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,842 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,845 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T12:26:39,848 creating build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T12:26:39,849 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T12:26:39,851 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T12:26:39,854 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T12:26:39,855 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T12:26:39,859 creating build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,860 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,864 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,867 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,870 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,873 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,875 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,877 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,880 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,882 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T12:26:39,884 creating build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,885 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,888 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,891 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,893 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,895 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,897 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,901 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,903 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,905 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,908 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,910 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,912 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,914 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,917 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,919 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,920 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,923 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,924 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,928 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,930 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,933 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,935 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,937 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,938 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:39,942 creating build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,943 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,945 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,947 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,949 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,952 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,954 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,956 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T12:26:39,959 creating build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:39,960 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:39,963 creating build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:39,964 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:39,966 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:39,968 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:39,971 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:39,972 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:39,974 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:39,976 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:39,979 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,980 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,983 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,985 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,988 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,989 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T12:26:39,992 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:39,993 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:39,996 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:39,998 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:39,999 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:40,001 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:40,003 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:40,005 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T12:26:40,007 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,008 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,010 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,013 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,015 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,016 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,018 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,020 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,022 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,024 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T12:26:40,026 running egg_info 2023-09-09T12:26:40,080 writing Mikado.egg-info/PKG-INFO 2023-09-09T12:26:40,084 writing dependency_links to Mikado.egg-info/dependency_links.txt 2023-09-09T12:26:40,086 writing entry points to Mikado.egg-info/entry_points.txt 2023-09-09T12:26:40,088 writing requirements to Mikado.egg-info/requires.txt 2023-09-09T12:26:40,089 writing top-level names to Mikado.egg-info/top_level.txt 2023-09-09T12:26:40,125 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-09T12:26:40,140 reading manifest template 'MANIFEST.in' 2023-09-09T12:26:40,842 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-09T12:26:40,842 adding license file 'AUTHORS' 2023-09-09T12:26:40,872 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-09T12:26:40,894 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2023-09-09T12:26:40,894 !! 2023-09-09T12:26:40,895 ******************************************************************************** 2023-09-09T12:26:40,895 ############################ 2023-09-09T12:26:40,896 # Package would be ignored # 2023-09-09T12:26:40,897 ############################ 2023-09-09T12:26:40,897 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2023-09-09T12:26:40,897 but it is absent from setuptools' `packages` configuration. 2023-09-09T12:26:40,898 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T12:26:40,899 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2023-09-09T12:26:40,899 to the `packages` configuration field. 2023-09-09T12:26:40,900 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T12:26:40,901 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T12:26:40,901 instead of `find_packages(...)`/`find:`). 2023-09-09T12:26:40,902 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T12:26:40,903 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T12:26:40,904 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2023-09-09T12:26:40,904 already explicitly excluding 'Mikado.configuration.scoring_files' via 2023-09-09T12:26:40,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T12:26:40,906 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T12:26:40,906 combination with a more fine grained `package-data` configuration. 2023-09-09T12:26:40,907 You can read more about "package data files" on setuptools documentation page: 2023-09-09T12:26:40,908 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T12:26:40,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T12:26:40,910 even if it does not contain any `.py` files. 2023-09-09T12:26:40,912 On the other hand, currently there is no concept of package data 2023-09-09T12:26:40,916 directory, all directories are treated like packages. 2023-09-09T12:26:40,917 ******************************************************************************** 2023-09-09T12:26:40,918 !! 2023-09-09T12:26:40,918 check.warn(importable) 2023-09-09T12:26:40,919 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2023-09-09T12:26:40,919 !! 2023-09-09T12:26:40,921 ******************************************************************************** 2023-09-09T12:26:40,921 ############################ 2023-09-09T12:26:40,922 # Package would be ignored # 2023-09-09T12:26:40,922 ############################ 2023-09-09T12:26:40,923 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2023-09-09T12:26:40,924 but it is absent from setuptools' `packages` configuration. 2023-09-09T12:26:40,925 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T12:26:40,927 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2023-09-09T12:26:40,928 to the `packages` configuration field. 2023-09-09T12:26:40,930 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T12:26:40,930 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T12:26:40,931 instead of `find_packages(...)`/`find:`). 2023-09-09T12:26:40,932 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T12:26:40,933 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T12:26:40,934 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2023-09-09T12:26:40,935 already explicitly excluding 'Mikado.tests.__pycache__' via 2023-09-09T12:26:40,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T12:26:40,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T12:26:40,936 combination with a more fine grained `package-data` configuration. 2023-09-09T12:26:40,937 You can read more about "package data files" on setuptools documentation page: 2023-09-09T12:26:40,938 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T12:26:40,940 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T12:26:40,940 even if it does not contain any `.py` files. 2023-09-09T12:26:40,941 On the other hand, currently there is no concept of package data 2023-09-09T12:26:40,941 directory, all directories are treated like packages. 2023-09-09T12:26:40,942 ******************************************************************************** 2023-09-09T12:26:40,943 !! 2023-09-09T12:26:40,944 check.warn(importable) 2023-09-09T12:26:40,944 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2023-09-09T12:26:40,945 !! 2023-09-09T12:26:40,946 ******************************************************************************** 2023-09-09T12:26:40,946 ############################ 2023-09-09T12:26:40,947 # Package would be ignored # 2023-09-09T12:26:40,947 ############################ 2023-09-09T12:26:40,948 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2023-09-09T12:26:40,949 but it is absent from setuptools' `packages` configuration. 2023-09-09T12:26:40,950 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T12:26:40,950 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2023-09-09T12:26:40,951 to the `packages` configuration field. 2023-09-09T12:26:40,952 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T12:26:40,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T12:26:40,953 instead of `find_packages(...)`/`find:`). 2023-09-09T12:26:40,954 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T12:26:40,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T12:26:40,957 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2023-09-09T12:26:40,957 already explicitly excluding 'Mikado.tests.fusion_test' via 2023-09-09T12:26:40,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T12:26:40,958 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T12:26:40,959 combination with a more fine grained `package-data` configuration. 2023-09-09T12:26:40,961 You can read more about "package data files" on setuptools documentation page: 2023-09-09T12:26:40,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T12:26:40,964 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T12:26:40,965 even if it does not contain any `.py` files. 2023-09-09T12:26:40,965 On the other hand, currently there is no concept of package data 2023-09-09T12:26:40,966 directory, all directories are treated like packages. 2023-09-09T12:26:40,966 ******************************************************************************** 2023-09-09T12:26:40,967 !! 2023-09-09T12:26:40,968 check.warn(importable) 2023-09-09T12:26:40,968 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,969 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,969 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,970 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,970 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,971 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:40,971 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,058 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,060 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,063 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,066 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,069 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,075 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,095 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,122 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,126 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,128 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,130 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,132 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,135 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,138 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,140 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,143 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,145 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T12:26:41,237 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,238 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,240 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,242 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,244 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,247 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,250 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,253 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,255 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,258 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,260 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,263 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,267 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,270 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,273 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,275 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,278 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,280 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,282 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,284 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,287 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,289 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,292 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,294 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,296 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,298 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,300 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,302 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,304 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,307 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,309 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,312 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,314 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,315 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,318 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,320 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,321 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,323 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,326 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,328 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,330 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,332 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,334 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,336 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,339 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,341 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,343 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,345 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,347 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,349 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,352 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,354 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,356 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,359 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,362 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,364 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,367 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,370 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,373 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,376 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,378 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,381 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,384 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,386 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,389 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,391 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,394 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,397 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,400 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,403 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,406 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,409 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,412 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,415 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,418 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,420 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T12:26:41,423 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T12:26:41,424 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T12:26:41,426 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T12:26:41,429 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T12:26:41,431 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,434 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,436 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,438 copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,440 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,442 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T12:26:41,445 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,475 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,477 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,484 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,486 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,487 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:41,490 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:41,493 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:41,495 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T12:26:41,497 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,498 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,500 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,502 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,504 copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,506 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T12:26:41,516 running build_ext 2023-09-09T12:26:41,522 building 'Mikado.utilities.overlap' extension 2023-09-09T12:26:41,523 creating build/temp.linux-armv7l-cpython-311 2023-09-09T12:26:41,523 creating build/temp.linux-armv7l-cpython-311/Mikado 2023-09-09T12:26:41,524 creating build/temp.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T12:26:41,525 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o 2023-09-09T12:26:45,565 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so 2023-09-09T12:26:45,671 building 'Mikado.scales.f1' extension 2023-09-09T12:26:45,672 creating build/temp.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T12:26:45,672 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o 2023-09-09T12:26:49,016 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so 2023-09-09T12:26:49,118 building 'Mikado.scales.contrast' extension 2023-09-09T12:26:49,119 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o 2023-09-09T12:27:02,036 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so 2023-09-09T12:27:02,150 building 'Mikado.utilities.intervaltree' extension 2023-09-09T12:27:02,152 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o 2023-09-09T12:27:23,081 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so 2023-09-09T12:27:23,206 running build_scripts 2023-09-09T12:27:23,206 creating build/scripts-3.11 2023-09-09T12:27:23,207 copying and adjusting util/create_model.py -> build/scripts-3.11 2023-09-09T12:27:23,210 copying and adjusting util/trim_long_introns.py -> build/scripts-3.11 2023-09-09T12:27:23,212 copying and adjusting util/analyse_metrics.py -> build/scripts-3.11 2023-09-09T12:27:23,213 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.11 2023-09-09T12:27:23,215 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.11 2023-09-09T12:27:23,216 copying and adjusting util/bam2gtf.py -> build/scripts-3.11 2023-09-09T12:27:23,218 copying and adjusting util/remove_from_embl.py -> build/scripts-3.11 2023-09-09T12:27:23,219 copying and adjusting util/align_collect.py -> build/scripts-3.11 2023-09-09T12:27:23,221 copying and adjusting util/asm_collect.py -> build/scripts-3.11 2023-09-09T12:27:23,222 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.11 2023-09-09T12:27:23,224 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.11 2023-09-09T12:27:23,225 copying and adjusting util/split_fasta.py -> build/scripts-3.11 2023-09-09T12:27:23,227 copying and adjusting util/class_run.py -> build/scripts-3.11 2023-09-09T12:27:23,228 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.11 2023-09-09T12:27:23,230 copying and adjusting util/grep.py -> build/scripts-3.11 2023-09-09T12:27:23,232 copying and adjusting util/self_training.py -> build/scripts-3.11 2023-09-09T12:27:23,234 changing mode of build/scripts-3.11/create_model.py from 644 to 755 2023-09-09T12:27:23,234 changing mode of build/scripts-3.11/trim_long_introns.py from 644 to 755 2023-09-09T12:27:23,235 changing mode of build/scripts-3.11/analyse_metrics.py from 644 to 755 2023-09-09T12:27:23,235 changing mode of build/scripts-3.11/add_transcript_feature_to_gtf.py from 644 to 755 2023-09-09T12:27:23,236 changing mode of build/scripts-3.11/gffjunc_to_bed12.py from 644 to 755 2023-09-09T12:27:23,236 changing mode of build/scripts-3.11/bam2gtf.py from 644 to 755 2023-09-09T12:27:23,237 changing mode of build/scripts-3.11/remove_from_embl.py from 644 to 755 2023-09-09T12:27:23,237 changing mode of build/scripts-3.11/align_collect.py from 644 to 755 2023-09-09T12:27:23,238 changing mode of build/scripts-3.11/asm_collect.py from 644 to 755 2023-09-09T12:27:23,238 changing mode of build/scripts-3.11/sanitize_blast_db.py from 644 to 755 2023-09-09T12:27:23,239 changing mode of build/scripts-3.11/getFastaFromIds.py from 644 to 755 2023-09-09T12:27:23,239 changing mode of build/scripts-3.11/split_fasta.py from 644 to 755 2023-09-09T12:27:23,240 changing mode of build/scripts-3.11/class_run.py from 644 to 755 2023-09-09T12:27:23,241 changing mode of build/scripts-3.11/merge_junction_bed12.py from 644 to 755 2023-09-09T12:27:23,241 changing mode of build/scripts-3.11/grep.py from 644 to 755 2023-09-09T12:27:23,242 changing mode of build/scripts-3.11/self_training.py from 644 to 755 2023-09-09T12:27:23,264 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-09T12:27:23,265 !! 2023-09-09T12:27:23,266 ******************************************************************************** 2023-09-09T12:27:23,267 Please avoid running ``setup.py`` directly. 2023-09-09T12:27:23,268 Instead, use pypa/build, pypa/installer or other 2023-09-09T12:27:23,268 standards-based tools. 2023-09-09T12:27:23,269 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-09T12:27:23,269 ******************************************************************************** 2023-09-09T12:27:23,270 !! 2023-09-09T12:27:23,271 self.initialize_options() 2023-09-09T12:27:23,289 installing to build/bdist.linux-armv7l/wheel 2023-09-09T12:27:23,289 running install 2023-09-09T12:27:23,313 running install_lib 2023-09-09T12:27:23,337 creating build/bdist.linux-armv7l 2023-09-09T12:27:23,337 creating build/bdist.linux-armv7l/wheel 2023-09-09T12:27:23,338 creating build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T12:27:23,339 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T12:27:23,340 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T12:27:23,342 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T12:27:23,345 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T12:27:23,349 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,350 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,353 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,356 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,358 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,360 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T12:27:23,363 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T12:27:23,366 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,367 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,370 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,380 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,382 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,384 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,395 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,398 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,404 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,406 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,408 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,410 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,413 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,414 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,417 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T12:27:23,422 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T12:27:23,423 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T12:27:23,426 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T12:27:23,429 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T12:27:23,430 copying build/lib.linux-armv7l-cpython-311/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T12:27:23,432 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T12:27:23,433 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T12:27:23,435 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T12:27:23,437 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T12:27:23,440 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,441 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,444 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,446 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,448 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,450 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,452 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,454 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T12:27:23,456 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T12:27:23,459 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,459 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,461 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,464 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,466 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,467 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,469 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,472 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,474 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,475 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,477 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,479 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,481 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,483 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T12:27:23,485 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,488 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,490 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,493 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T12:27:23,495 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T12:27:23,496 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T12:27:23,499 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T12:27:23,504 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T12:27:23,506 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T12:27:23,509 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,510 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,513 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,516 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,518 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,522 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,525 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,527 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,531 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,534 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T12:27:23,537 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,539 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,542 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,543 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,547 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,549 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,553 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,556 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,558 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,561 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,563 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,565 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,567 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,569 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,571 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,574 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,577 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,580 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,583 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,585 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,587 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,590 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,593 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,595 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,598 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,602 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,606 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,608 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,610 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,612 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,614 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,616 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,619 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,621 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,624 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,626 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,629 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,631 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,633 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,635 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,637 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,639 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,642 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,644 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,646 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,648 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,650 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,652 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,654 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,656 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,658 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,661 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,663 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,666 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,668 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,670 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,673 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,675 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,677 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,679 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,681 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,683 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,686 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,688 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,689 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,692 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,694 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,696 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,698 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,700 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,702 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,704 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,706 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,707 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,710 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,713 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,716 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,718 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T12:27:23,721 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,723 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,725 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,728 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,731 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,733 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,735 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,737 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,740 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,743 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,746 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,748 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,750 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,867 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,870 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,872 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,874 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,875 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,877 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,882 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,884 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,886 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,889 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,892 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T12:27:23,893 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T12:27:23,895 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T12:27:23,897 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T12:27:23,899 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,990 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,992 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,994 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:23,997 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,019 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,021 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,023 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,051 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,054 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,057 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,059 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,061 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,063 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,065 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,067 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,070 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,073 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T12:27:24,076 copying build/lib.linux-armv7l-cpython-311/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T12:27:24,078 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,079 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,082 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,085 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,088 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,091 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,093 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,097 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T12:27:24,100 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,101 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,103 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/local.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,105 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,108 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,111 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,114 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,116 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T12:27:24,119 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,120 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,122 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,143 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,144 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,146 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,162 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,165 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,170 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,172 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,178 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T12:27:24,181 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,182 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,184 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,186 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,188 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,189 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,192 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,194 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,195 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/spombe.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,197 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,199 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,201 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,202 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T12:27:24,204 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T12:27:24,207 running install_egg_info 2023-09-09T12:27:24,237 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10-py3.11.egg-info 2023-09-09T12:27:24,252 running install_scripts 2023-09-09T12:27:24,253 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data 2023-09-09T12:27:24,253 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,254 copying build/scripts-3.11/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,257 copying build/scripts-3.11/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,259 copying build/scripts-3.11/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,261 copying build/scripts-3.11/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,263 copying build/scripts-3.11/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,265 copying build/scripts-3.11/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,267 copying build/scripts-3.11/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,269 copying build/scripts-3.11/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,271 copying build/scripts-3.11/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,273 copying build/scripts-3.11/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,274 copying build/scripts-3.11/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,276 copying build/scripts-3.11/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,278 copying build/scripts-3.11/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,280 copying build/scripts-3.11/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,282 copying build/scripts-3.11/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,284 copying build/scripts-3.11/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts 2023-09-09T12:27:24,286 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/create_model.py to 755 2023-09-09T12:27:24,286 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/trim_long_introns.py to 755 2023-09-09T12:27:24,287 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/analyse_metrics.py to 755 2023-09-09T12:27:24,287 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/add_transcript_feature_to_gtf.py to 755 2023-09-09T12:27:24,288 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/gffjunc_to_bed12.py to 755 2023-09-09T12:27:24,288 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/bam2gtf.py to 755 2023-09-09T12:27:24,289 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/remove_from_embl.py to 755 2023-09-09T12:27:24,289 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/align_collect.py to 755 2023-09-09T12:27:24,290 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/asm_collect.py to 755 2023-09-09T12:27:24,290 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/sanitize_blast_db.py to 755 2023-09-09T12:27:24,291 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/getFastaFromIds.py to 755 2023-09-09T12:27:24,291 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/split_fasta.py to 755 2023-09-09T12:27:24,292 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/class_run.py to 755 2023-09-09T12:27:24,292 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/merge_junction_bed12.py to 755 2023-09-09T12:27:24,293 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/grep.py to 755 2023-09-09T12:27:24,293 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.data/scripts/self_training.py to 755 2023-09-09T12:27:24,363 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.0b10.dist-info/WHEEL 2023-09-09T12:27:24,366 creating '/tmp/pip-wheel-je3btqsi/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-09T12:27:24,370 adding 'Mikado/__init__.py' 2023-09-09T12:27:24,371 adding 'Mikado/exceptions.py' 2023-09-09T12:27:24,374 adding 'Mikado/configuration/__init__.py' 2023-09-09T12:27:24,378 adding 'Mikado/configuration/configuration_blueprint.json' 2023-09-09T12:27:24,383 adding 'Mikado/configuration/configurator.py' 2023-09-09T12:27:24,385 adding 'Mikado/configuration/daijin_configurator.py' 2023-09-09T12:27:24,387 adding 'Mikado/configuration/daijin_schema.json' 2023-09-09T12:27:24,389 adding 'Mikado/configuration/requirements_blueprint.json' 2023-09-09T12:27:24,391 adding 'Mikado/configuration/scoring_blueprint.json' 2023-09-09T12:27:24,393 adding 'Mikado/configuration/scoring_files/human.yaml' 2023-09-09T12:27:24,395 adding 'Mikado/configuration/scoring_files/insects.yaml' 2023-09-09T12:27:24,397 adding 'Mikado/configuration/scoring_files/plants.yaml' 2023-09-09T12:27:24,398 adding 'Mikado/configuration/scoring_files/spombe.yaml' 2023-09-09T12:27:24,400 adding 'Mikado/configuration/scoring_files/worm.yaml' 2023-09-09T12:27:24,404 adding 'Mikado/daijin/__init__.py' 2023-09-09T12:27:24,406 adding 'Mikado/daijin/example_config.yaml' 2023-09-09T12:27:24,407 adding 'Mikado/daijin/hpc.json' 2023-09-09T12:27:24,409 adding 'Mikado/daijin/hpc.yaml' 2023-09-09T12:27:24,411 adding 'Mikado/daijin/local.yaml' 2023-09-09T12:27:24,413 adding 'Mikado/daijin/mikado.snakefile' 2023-09-09T12:27:24,418 adding 'Mikado/daijin/tr.snakefile' 2023-09-09T12:27:24,420 adding 'Mikado/loci/__init__.py' 2023-09-09T12:27:24,427 adding 'Mikado/loci/abstractlocus.py' 2023-09-09T12:27:24,429 adding 'Mikado/loci/excluded.py' 2023-09-09T12:27:24,433 adding 'Mikado/loci/locus.py' 2023-09-09T12:27:24,434 adding 'Mikado/loci/monosublocus.py' 2023-09-09T12:27:24,436 adding 'Mikado/loci/monosublocusholder.py' 2023-09-09T12:27:24,439 adding 'Mikado/loci/reference_gene.py' 2023-09-09T12:27:24,441 adding 'Mikado/loci/sublocus.py' 2023-09-09T12:27:24,446 adding 'Mikado/loci/superlocus.py' 2023-09-09T12:27:24,449 adding 'Mikado/parsers/GFF.py' 2023-09-09T12:27:24,451 adding 'Mikado/parsers/GTF.py' 2023-09-09T12:27:24,452 adding 'Mikado/parsers/__init__.py' 2023-09-09T12:27:24,455 adding 'Mikado/parsers/bed12.py' 2023-09-09T12:27:24,458 adding 'Mikado/parsers/blast_utils.py' 2023-09-09T12:27:24,462 adding 'Mikado/parsers/blast_xml.py' 2023-09-09T12:27:24,464 adding 'Mikado/parsers/gfannotation.py' 2023-09-09T12:27:24,465 adding 'Mikado/picking/__init__.py' 2023-09-09T12:27:24,469 adding 'Mikado/picking/loci_processer.py' 2023-09-09T12:27:24,474 adding 'Mikado/picking/picker.py' 2023-09-09T12:27:24,476 adding 'Mikado/preparation/__init__.py' 2023-09-09T12:27:24,478 adding 'Mikado/preparation/annotation_parser.py' 2023-09-09T12:27:24,480 adding 'Mikado/preparation/checking.py' 2023-09-09T12:27:24,482 adding 'Mikado/preparation/prepare.py' 2023-09-09T12:27:24,484 adding 'Mikado/scales/__init__.py' 2023-09-09T12:27:24,488 adding 'Mikado/scales/accountant.py' 2023-09-09T12:27:24,493 adding 'Mikado/scales/assigner.py' 2023-09-09T12:27:24,495 adding 'Mikado/scales/class_codes.py' 2023-09-09T12:27:24,498 adding 'Mikado/scales/compare.py' 2023-09-09T12:27:24,542 adding 'Mikado/scales/contrast.c' 2023-09-09T12:27:24,654 adding 'Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T12:27:24,660 adding 'Mikado/scales/contrast.pxd' 2023-09-09T12:27:24,662 adding 'Mikado/scales/contrast.pyx' 2023-09-09T12:27:24,688 adding 'Mikado/scales/f1.c' 2023-09-09T12:27:24,727 adding 'Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T12:27:24,730 adding 'Mikado/scales/f1.pxd' 2023-09-09T12:27:24,731 adding 'Mikado/scales/f1.pyx' 2023-09-09T12:27:24,732 adding 'Mikado/scales/resultstorer.py' 2023-09-09T12:27:24,734 adding 'Mikado/serializers/__init__.py' 2023-09-09T12:27:24,736 adding 'Mikado/serializers/external.py' 2023-09-09T12:27:24,737 adding 'Mikado/serializers/junction.py' 2023-09-09T12:27:24,739 adding 'Mikado/serializers/orf.py' 2023-09-09T12:27:24,741 adding 'Mikado/serializers/blast_serializer/__init__.py' 2023-09-09T12:27:24,743 adding 'Mikado/serializers/blast_serializer/hit.py' 2023-09-09T12:27:24,745 adding 'Mikado/serializers/blast_serializer/hsp.py' 2023-09-09T12:27:24,746 adding 'Mikado/serializers/blast_serializer/query.py' 2023-09-09T12:27:24,747 adding 'Mikado/serializers/blast_serializer/target.py' 2023-09-09T12:27:24,749 adding 'Mikado/serializers/blast_serializer/utils.py' 2023-09-09T12:27:24,752 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2023-09-09T12:27:24,754 adding 'Mikado/subprograms/__init__.py' 2023-09-09T12:27:24,755 adding 'Mikado/subprograms/__main__.py' 2023-09-09T12:27:24,757 adding 'Mikado/subprograms/compare.py' 2023-09-09T12:27:24,759 adding 'Mikado/subprograms/configure.py' 2023-09-09T12:27:24,761 adding 'Mikado/subprograms/pick.py' 2023-09-09T12:27:24,763 adding 'Mikado/subprograms/prepare.py' 2023-09-09T12:27:24,765 adding 'Mikado/subprograms/serialise.py' 2023-09-09T12:27:24,767 adding 'Mikado/subprograms/util/__init__.py' 2023-09-09T12:27:24,769 adding 'Mikado/subprograms/util/awk_gtf.py' 2023-09-09T12:27:24,770 adding 'Mikado/subprograms/util/class_codes.py' 2023-09-09T12:27:24,772 adding 'Mikado/subprograms/util/convert.py' 2023-09-09T12:27:24,773 adding 'Mikado/subprograms/util/grep.py' 2023-09-09T12:27:24,774 adding 'Mikado/subprograms/util/merge_blast.py' 2023-09-09T12:27:24,776 adding 'Mikado/subprograms/util/metrics.py' 2023-09-09T12:27:24,779 adding 'Mikado/subprograms/util/stats.py' 2023-09-09T12:27:24,781 adding 'Mikado/subprograms/util/trim.py' 2023-09-09T12:27:24,783 adding 'Mikado/tests/__init__.py' 2023-09-09T12:27:24,786 adding 'Mikado/tests/assigner_tester.py' 2023-09-09T12:27:25,680 adding 'Mikado/tests/chr5.fas.gz' 2023-09-09T12:27:25,746 adding 'Mikado/tests/configuration.yaml' 2023-09-09T12:27:25,748 adding 'Mikado/tests/cufflinks.gtf' 2023-09-09T12:27:25,749 adding 'Mikado/tests/genome.fai' 2023-09-09T12:27:25,751 adding 'Mikado/tests/intervaltree_tests.py' 2023-09-09T12:27:25,756 adding 'Mikado/tests/junctions.bed' 2023-09-09T12:27:25,760 adding 'Mikado/tests/locus_tester.py' 2023-09-09T12:27:25,786 adding 'Mikado/tests/mikado.blast.asn.gz' 2023-09-09T12:27:25,841 adding 'Mikado/tests/mikado.blast.xml' 2023-09-09T12:27:26,131 adding 'Mikado/tests/mikado.db' 2023-09-09T12:27:26,148 adding 'Mikado/tests/mikado_prepared.gtf' 2023-09-09T12:27:26,154 adding 'Mikado/tests/orf_tester.py' 2023-09-09T12:27:26,156 adding 'Mikado/tests/parser_testing.py' 2023-09-09T12:27:26,157 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2023-09-09T12:27:26,158 adding 'Mikado/tests/plants.yaml~' 2023-09-09T12:27:26,160 adding 'Mikado/tests/scoring_only_cds.yaml' 2023-09-09T12:27:26,161 adding 'Mikado/tests/test_blast_related.py' 2023-09-09T12:27:26,162 adding 'Mikado/tests/test_clique_methods.py' 2023-09-09T12:27:26,164 adding 'Mikado/tests/test_db_utils.py' 2023-09-09T12:27:26,165 adding 'Mikado/tests/test_external_scores.py' 2023-09-09T12:27:26,166 adding 'Mikado/tests/test_gene.py' 2023-09-09T12:27:26,168 adding 'Mikado/tests/test_invalid_orfs.py' 2023-09-09T12:27:26,169 adding 'Mikado/tests/test_json.py' 2023-09-09T12:27:26,171 adding 'Mikado/tests/test_metrics.py' 2023-09-09T12:27:26,172 adding 'Mikado/tests/test_modifications.py' 2023-09-09T12:27:26,174 adding 'Mikado/tests/test_serialisation.py' 2023-09-09T12:27:26,175 adding 'Mikado/tests/test_splitting.py' 2023-09-09T12:27:26,178 adding 'Mikado/tests/test_system_calls.py' 2023-09-09T12:27:26,180 adding 'Mikado/tests/test_transcript_checker.py' 2023-09-09T12:27:26,182 adding 'Mikado/tests/test_transcript_methods.py' 2023-09-09T12:27:26,185 adding 'Mikado/tests/transcript_tester_negative.py' 2023-09-09T12:27:26,189 adding 'Mikado/tests/transcript_tester_positive.py' 2023-09-09T12:27:26,192 adding 'Mikado/tests/transcript_tester_single.py' 2023-09-09T12:27:26,194 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2023-09-09T12:27:26,196 adding 'Mikado/tests/trinity.gff3' 2023-09-09T12:27:26,199 adding 'Mikado/tests/trinity.gtf' 2023-09-09T12:27:26,201 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2023-09-09T12:27:26,202 adding 'Mikado/tests/trinity_stats.txt' 2023-09-09T12:27:26,934 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2023-09-09T12:27:26,989 adding 'Mikado/tests/utilities_tester.py' 2023-09-09T12:27:26,992 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2023-09-09T12:27:26,993 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2023-09-09T12:27:26,994 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2023-09-09T12:27:26,999 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2023-09-09T12:27:27,003 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2023-09-09T12:27:27,007 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2023-09-09T12:27:27,009 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2023-09-09T12:27:27,012 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2023-09-09T12:27:27,013 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2023-09-09T12:27:27,020 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2023-09-09T12:27:27,026 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2023-09-09T12:27:27,033 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2023-09-09T12:27:27,039 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2023-09-09T12:27:27,045 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2023-09-09T12:27:27,051 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2023-09-09T12:27:27,052 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2023-09-09T12:27:27,054 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2023-09-09T12:27:27,055 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2023-09-09T12:27:27,057 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2023-09-09T12:27:27,058 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2023-09-09T12:27:27,061 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2023-09-09T12:27:27,062 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2023-09-09T12:27:27,064 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2023-09-09T12:27:27,065 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2023-09-09T12:27:27,067 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2023-09-09T12:27:27,068 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2023-09-09T12:27:27,070 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2023-09-09T12:27:27,071 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2023-09-09T12:27:27,073 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2023-09-09T12:27:27,074 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2023-09-09T12:27:27,076 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2023-09-09T12:27:27,077 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2023-09-09T12:27:27,078 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2023-09-09T12:27:27,080 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2023-09-09T12:27:27,081 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2023-09-09T12:27:27,083 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2023-09-09T12:27:27,084 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2023-09-09T12:27:27,086 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2023-09-09T12:27:27,087 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2023-09-09T12:27:27,089 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2023-09-09T12:27:27,090 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2023-09-09T12:27:27,092 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2023-09-09T12:27:27,094 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2023-09-09T12:27:27,095 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2023-09-09T12:27:27,097 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2023-09-09T12:27:27,099 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2023-09-09T12:27:27,100 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2023-09-09T12:27:27,102 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2023-09-09T12:27:27,103 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2023-09-09T12:27:27,105 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2023-09-09T12:27:27,107 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2023-09-09T12:27:27,109 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2023-09-09T12:27:27,111 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2023-09-09T12:27:27,113 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2023-09-09T12:27:27,118 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2023-09-09T12:27:27,122 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2023-09-09T12:27:27,126 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2023-09-09T12:27:27,128 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2023-09-09T12:27:27,130 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2023-09-09T12:27:27,132 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2023-09-09T12:27:27,135 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2023-09-09T12:27:27,137 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2023-09-09T12:27:27,139 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2023-09-09T12:27:27,143 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2023-09-09T12:27:27,146 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2023-09-09T12:27:27,150 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2023-09-09T12:27:27,155 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2023-09-09T12:27:27,161 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2023-09-09T12:27:27,166 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2023-09-09T12:27:27,171 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2023-09-09T12:27:27,175 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2023-09-09T12:27:27,178 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2023-09-09T12:27:27,181 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2023-09-09T12:27:27,183 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2023-09-09T12:27:27,184 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2023-09-09T12:27:27,186 adding 'Mikado/tests/fusion_test/fusion_test.log' 2023-09-09T12:27:27,187 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2023-09-09T12:27:27,189 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2023-09-09T12:27:27,191 adding 'Mikado/transcripts/__init__.py' 2023-09-09T12:27:27,192 adding 'Mikado/transcripts/clique_methods.py' 2023-09-09T12:27:27,203 adding 'Mikado/transcripts/transcript.py' 2023-09-09T12:27:27,206 adding 'Mikado/transcripts/transcriptchecker.py' 2023-09-09T12:27:27,207 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2023-09-09T12:27:27,211 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2023-09-09T12:27:27,213 adding 'Mikado/transcripts/transcript_methods/printing.py' 2023-09-09T12:27:27,216 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2023-09-09T12:27:27,220 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2023-09-09T12:27:27,223 adding 'Mikado/utilities/__init__.py' 2023-09-09T12:27:27,224 adding 'Mikado/utilities/dbutils.py' 2023-09-09T12:27:27,290 adding 'Mikado/utilities/intervaltree.c' 2023-09-09T12:27:27,474 adding 'Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T12:27:27,484 adding 'Mikado/utilities/intervaltree.pyx' 2023-09-09T12:27:27,486 adding 'Mikado/utilities/log_utils.py' 2023-09-09T12:27:27,511 adding 'Mikado/utilities/overlap.c' 2023-09-09T12:27:27,558 adding 'Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T12:27:27,560 adding 'Mikado/utilities/overlap.pxd' 2023-09-09T12:27:27,562 adding 'Mikado/utilities/overlap.pyx' 2023-09-09T12:27:27,564 adding 'Mikado-1.0.0b10.data/scripts/add_transcript_feature_to_gtf.py' 2023-09-09T12:27:27,565 adding 'Mikado-1.0.0b10.data/scripts/align_collect.py' 2023-09-09T12:27:27,566 adding 'Mikado-1.0.0b10.data/scripts/analyse_metrics.py' 2023-09-09T12:27:27,567 adding 'Mikado-1.0.0b10.data/scripts/asm_collect.py' 2023-09-09T12:27:27,569 adding 'Mikado-1.0.0b10.data/scripts/bam2gtf.py' 2023-09-09T12:27:27,570 adding 'Mikado-1.0.0b10.data/scripts/class_run.py' 2023-09-09T12:27:27,572 adding 'Mikado-1.0.0b10.data/scripts/create_model.py' 2023-09-09T12:27:27,573 adding 'Mikado-1.0.0b10.data/scripts/getFastaFromIds.py' 2023-09-09T12:27:27,574 adding 'Mikado-1.0.0b10.data/scripts/gffjunc_to_bed12.py' 2023-09-09T12:27:27,576 adding 'Mikado-1.0.0b10.data/scripts/grep.py' 2023-09-09T12:27:27,577 adding 'Mikado-1.0.0b10.data/scripts/merge_junction_bed12.py' 2023-09-09T12:27:27,578 adding 'Mikado-1.0.0b10.data/scripts/remove_from_embl.py' 2023-09-09T12:27:27,580 adding 'Mikado-1.0.0b10.data/scripts/sanitize_blast_db.py' 2023-09-09T12:27:27,582 adding 'Mikado-1.0.0b10.data/scripts/self_training.py' 2023-09-09T12:27:27,583 adding 'Mikado-1.0.0b10.data/scripts/split_fasta.py' 2023-09-09T12:27:27,584 adding 'Mikado-1.0.0b10.data/scripts/trim_long_introns.py' 2023-09-09T12:27:27,586 adding 'Mikado-1.0.0b10.dist-info/AUTHORS' 2023-09-09T12:27:27,588 adding 'Mikado-1.0.0b10.dist-info/METADATA' 2023-09-09T12:27:27,589 adding 'Mikado-1.0.0b10.dist-info/WHEEL' 2023-09-09T12:27:27,589 adding 'Mikado-1.0.0b10.dist-info/entry_points.txt' 2023-09-09T12:27:27,590 adding 'Mikado-1.0.0b10.dist-info/top_level.txt' 2023-09-09T12:27:27,594 adding 'Mikado-1.0.0b10.dist-info/RECORD' 2023-09-09T12:27:27,779 removing build/bdist.linux-armv7l/wheel 2023-09-09T12:27:27,992 Building wheel for mikado (setup.py): finished with status 'done' 2023-09-09T12:27:28,201 Created wheel for mikado: filename=Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl size=17570062 sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c 2023-09-09T12:27:28,202 Stored in directory: /tmp/pip-ephem-wheel-cache-to5z2w6t/wheels/63/5c/8f/b607b169f7325afbf4bf2b332bf6d20393b5ce4704299650f6 2023-09-09T12:27:28,224 Successfully built mikado 2023-09-09T12:27:28,637 Removed build tracker: '/tmp/pip-build-tracker-m7pi68df'