2023-09-09T14:20:58,599 Created temporary directory: /tmp/pip-build-tracker-3nw94xge 2023-09-09T14:20:58,600 Initialized build tracking at /tmp/pip-build-tracker-3nw94xge 2023-09-09T14:20:58,600 Created build tracker: /tmp/pip-build-tracker-3nw94xge 2023-09-09T14:20:58,601 Entered build tracker: /tmp/pip-build-tracker-3nw94xge 2023-09-09T14:20:58,601 Created temporary directory: /tmp/pip-wheel-upq24jyr 2023-09-09T14:20:58,604 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmkphpzx 2023-09-09T14:20:58,626 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-09T14:20:58,630 2 location(s) to search for versions of mikado: 2023-09-09T14:20:58,630 * https://pypi.org/simple/mikado/ 2023-09-09T14:20:58,630 * https://www.piwheels.org/simple/mikado/ 2023-09-09T14:20:58,630 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2023-09-09T14:20:58,631 Getting page https://pypi.org/simple/mikado/ 2023-09-09T14:20:58,633 Found index url https://pypi.org/simple/ 2023-09-09T14:20:58,772 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2023-09-09T14:20:58,778 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2023-09-09T14:20:58,778 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2023-09-09T14:20:58,779 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2023-09-09T14:20:58,780 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2023-09-09T14:20:58,780 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2023-09-09T14:20:58,781 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2023-09-09T14:20:58,782 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2023-09-09T14:20:58,783 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2023-09-09T14:20:58,783 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2023-09-09T14:20:58,784 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2023-09-09T14:20:58,785 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2023-09-09T14:20:58,785 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2023-09-09T14:20:58,786 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2023-09-09T14:20:58,788 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2023-09-09T14:20:58,789 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2023-09-09T14:20:58,790 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2023-09-09T14:20:58,791 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2023-09-09T14:20:58,792 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2023-09-09T14:20:58,792 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2023-09-09T14:20:58,793 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2023-09-09T14:20:58,794 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2023-09-09T14:20:58,795 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2023-09-09T14:20:58,796 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2023-09-09T14:20:58,797 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2023-09-09T14:20:58,798 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2023-09-09T14:20:58,799 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2023-09-09T14:20:58,800 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2023-09-09T14:20:58,800 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2023-09-09T14:20:58,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2023-09-09T14:20:58,802 Getting page https://www.piwheels.org/simple/mikado/ 2023-09-09T14:20:58,803 Found index url https://www.piwheels.org/simple/ 2023-09-09T14:20:59,460 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2023-09-09T14:20:59,515 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,516 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,518 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,518 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,519 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,520 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,521 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,521 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,522 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,523 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,524 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,525 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,526 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,526 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,527 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,528 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,529 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,530 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,531 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,531 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,532 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,533 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,534 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,535 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,535 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,536 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-09T14:20:59,537 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,573 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,573 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,574 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,575 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,577 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,578 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,578 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,579 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,580 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,580 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,581 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,581 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,582 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,582 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,583 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,584 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,584 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,585 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,585 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,586 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,587 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,587 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,588 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,589 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,589 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,590 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,590 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,590 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,591 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,591 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,592 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,592 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,593 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,594 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,594 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,595 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,595 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,596 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,597 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-09T14:20:59,597 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2023-09-09T14:20:59,598 Skipping link: not a file: https://pypi.org/simple/mikado/ 2023-09-09T14:20:59,619 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2023-09-09T14:20:59,637 Collecting mikado==1.0 2023-09-09T14:20:59,639 Created temporary directory: /tmp/pip-unpack-_sj_usa5 2023-09-09T14:21:00,117 Downloading Mikado-1.0.tar.gz (17.2 MB) 2023-09-09T14:21:05,109 Added mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-3nw94xge' 2023-09-09T14:21:05,111 Running setup.py (path:/tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2/setup.py) egg_info for package mikado 2023-09-09T14:21:05,112 Created temporary directory: /tmp/pip-pip-egg-info-8wgu6ed1 2023-09-09T14:21:05,113 Preparing metadata (setup.py): started 2023-09-09T14:21:05,114 Running command python setup.py egg_info 2023-09-09T14:21:07,303 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2/Mikado/scales/contrast.pxd 2023-09-09T14:21:07,303 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T14:21:08,131 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2/Mikado/scales/f1.pxd 2023-09-09T14:21:08,132 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T14:21:08,215 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2/Mikado/utilities/intervaltree.pyx 2023-09-09T14:21:08,216 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T14:21:09,269 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2/Mikado/utilities/overlap.pxd 2023-09-09T14:21:09,270 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-09T14:21:09,394 Compiling Mikado/utilities/overlap.pyx because it changed. 2023-09-09T14:21:09,395 Compiling Mikado/scales/f1.pyx because it changed. 2023-09-09T14:21:09,395 Compiling Mikado/scales/contrast.pyx because it changed. 2023-09-09T14:21:09,396 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2023-09-09T14:21:09,396 [1/4] Cythonizing Mikado/scales/contrast.pyx 2023-09-09T14:21:09,397 [2/4] Cythonizing Mikado/scales/f1.pyx 2023-09-09T14:21:09,397 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2023-09-09T14:21:09,398 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2023-09-09T14:21:09,881 running egg_info 2023-09-09T14:21:09,882 creating /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info 2023-09-09T14:21:09,907 writing /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/PKG-INFO 2023-09-09T14:21:09,912 writing dependency_links to /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/dependency_links.txt 2023-09-09T14:21:09,913 writing entry points to /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/entry_points.txt 2023-09-09T14:21:09,915 writing requirements to /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/requires.txt 2023-09-09T14:21:09,916 writing top-level names to /tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/top_level.txt 2023-09-09T14:21:09,918 writing manifest file '/tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/SOURCES.txt' 2023-09-09T14:21:10,054 reading manifest file '/tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/SOURCES.txt' 2023-09-09T14:21:10,055 reading manifest template 'MANIFEST.in' 2023-09-09T14:21:10,646 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-09T14:21:10,647 adding license file 'AUTHORS' 2023-09-09T14:21:10,666 writing manifest file '/tmp/pip-pip-egg-info-8wgu6ed1/Mikado.egg-info/SOURCES.txt' 2023-09-09T14:21:10,942 Preparing metadata (setup.py): finished with status 'done' 2023-09-09T14:21:10,946 Source in /tmp/pip-wheel-upq24jyr/mikado_038d94172c384fba9939aed683be5cc2 has version 1.0, which satisfies requirement mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz 2023-09-09T14:21:10,947 Removed mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-3nw94xge' 2023-09-09T14:21:10,951 Created temporary directory: /tmp/pip-unpack-u5vehf4d 2023-09-09T14:21:10,952 Created temporary directory: /tmp/pip-unpack-apmmydd5 2023-09-09T14:21:10,983 Building wheels for collected packages: mikado 2023-09-09T14:21:10,987 Created temporary directory: /tmp/pip-wheel-70udbkj6 2023-09-09T14:21:10,988 Building wheel for mikado (setup.py): started 2023-09-09T14:21:10,989 Destination directory: /tmp/pip-wheel-70udbkj6 2023-09-09T14:21:10,990 Running command python setup.py bdist_wheel 2023-09-09T14:21:12,526 running bdist_wheel 2023-09-09T14:21:12,625 running build 2023-09-09T14:21:12,626 running build_py 2023-09-09T14:21:12,652 creating build/lib.linux-armv7l-cpython-311 2023-09-09T14:21:12,653 creating build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T14:21:12,654 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T14:21:12,656 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-09T14:21:12,658 creating build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,659 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,662 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,665 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,667 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,669 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,670 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,673 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,676 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,678 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-09T14:21:12,681 creating build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:12,682 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:12,684 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:12,686 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:12,689 creating build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,690 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,692 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,694 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,696 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,698 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,700 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,703 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-09T14:21:12,706 creating build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,706 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,708 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,710 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,713 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,715 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,717 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:12,720 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:12,721 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:12,723 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:12,725 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:12,728 creating build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T14:21:12,729 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T14:21:12,731 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T14:21:12,733 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-09T14:21:12,736 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T14:21:12,737 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T14:21:12,739 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T14:21:12,741 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T14:21:12,744 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-09T14:21:12,747 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,748 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,750 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,753 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,755 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,757 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,759 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,761 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-09T14:21:12,763 creating build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:12,764 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:12,767 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T14:21:12,767 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T14:21:12,770 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T14:21:12,771 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T14:21:12,773 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-09T14:21:12,775 creating build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T14:21:12,776 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T14:21:12,778 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T14:21:12,780 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T14:21:12,782 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-09T14:21:12,785 creating build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,786 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,788 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,790 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,792 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,794 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,796 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,799 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,802 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,805 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,806 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,809 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,811 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,813 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,814 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,816 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,818 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,821 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,823 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,824 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,827 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,830 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,831 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,833 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,835 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:12,837 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,838 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,841 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,843 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,845 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,847 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-09T14:21:12,850 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,851 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,853 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,854 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,856 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,858 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,860 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,862 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,864 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,866 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-09T14:21:12,869 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,870 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,872 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,873 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,875 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,877 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,879 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,881 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-09T14:21:12,883 running egg_info 2023-09-09T14:21:12,937 writing Mikado.egg-info/PKG-INFO 2023-09-09T14:21:12,941 writing dependency_links to Mikado.egg-info/dependency_links.txt 2023-09-09T14:21:12,943 writing entry points to Mikado.egg-info/entry_points.txt 2023-09-09T14:21:12,945 writing requirements to Mikado.egg-info/requires.txt 2023-09-09T14:21:12,946 writing top-level names to Mikado.egg-info/top_level.txt 2023-09-09T14:21:12,982 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-09T14:21:12,997 reading manifest template 'MANIFEST.in' 2023-09-09T14:21:13,626 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-09T14:21:13,626 adding license file 'AUTHORS' 2023-09-09T14:21:13,656 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-09T14:21:13,678 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2023-09-09T14:21:13,678 !! 2023-09-09T14:21:13,679 ******************************************************************************** 2023-09-09T14:21:13,679 ############################ 2023-09-09T14:21:13,680 # Package would be ignored # 2023-09-09T14:21:13,680 ############################ 2023-09-09T14:21:13,681 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2023-09-09T14:21:13,681 but it is absent from setuptools' `packages` configuration. 2023-09-09T14:21:13,682 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T14:21:13,682 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2023-09-09T14:21:13,683 to the `packages` configuration field. 2023-09-09T14:21:13,684 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T14:21:13,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T14:21:13,685 instead of `find_packages(...)`/`find:`). 2023-09-09T14:21:13,686 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T14:21:13,687 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T14:21:13,688 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2023-09-09T14:21:13,689 already explicitly excluding 'Mikado.configuration.scoring_files' via 2023-09-09T14:21:13,689 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T14:21:13,690 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T14:21:13,690 combination with a more fine grained `package-data` configuration. 2023-09-09T14:21:13,691 You can read more about "package data files" on setuptools documentation page: 2023-09-09T14:21:13,692 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T14:21:13,694 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T14:21:13,694 even if it does not contain any `.py` files. 2023-09-09T14:21:13,695 On the other hand, currently there is no concept of package data 2023-09-09T14:21:13,695 directory, all directories are treated like packages. 2023-09-09T14:21:13,696 ******************************************************************************** 2023-09-09T14:21:13,697 !! 2023-09-09T14:21:13,697 check.warn(importable) 2023-09-09T14:21:13,698 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2023-09-09T14:21:13,701 !! 2023-09-09T14:21:13,709 ******************************************************************************** 2023-09-09T14:21:13,710 ############################ 2023-09-09T14:21:13,710 # Package would be ignored # 2023-09-09T14:21:13,711 ############################ 2023-09-09T14:21:13,711 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2023-09-09T14:21:13,712 but it is absent from setuptools' `packages` configuration. 2023-09-09T14:21:13,714 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T14:21:13,714 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2023-09-09T14:21:13,714 to the `packages` configuration field. 2023-09-09T14:21:13,715 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T14:21:13,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T14:21:13,717 instead of `find_packages(...)`/`find:`). 2023-09-09T14:21:13,720 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T14:21:13,721 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T14:21:13,722 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2023-09-09T14:21:13,722 already explicitly excluding 'Mikado.tests.__pycache__' via 2023-09-09T14:21:13,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T14:21:13,724 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T14:21:13,724 combination with a more fine grained `package-data` configuration. 2023-09-09T14:21:13,725 You can read more about "package data files" on setuptools documentation page: 2023-09-09T14:21:13,733 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T14:21:13,735 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T14:21:13,735 even if it does not contain any `.py` files. 2023-09-09T14:21:13,736 On the other hand, currently there is no concept of package data 2023-09-09T14:21:13,736 directory, all directories are treated like packages. 2023-09-09T14:21:13,737 ******************************************************************************** 2023-09-09T14:21:13,738 !! 2023-09-09T14:21:13,738 check.warn(importable) 2023-09-09T14:21:13,739 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2023-09-09T14:21:13,740 !! 2023-09-09T14:21:13,741 ******************************************************************************** 2023-09-09T14:21:13,741 ############################ 2023-09-09T14:21:13,746 # Package would be ignored # 2023-09-09T14:21:13,746 ############################ 2023-09-09T14:21:13,747 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2023-09-09T14:21:13,748 but it is absent from setuptools' `packages` configuration. 2023-09-09T14:21:13,749 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T14:21:13,750 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2023-09-09T14:21:13,751 to the `packages` configuration field. 2023-09-09T14:21:13,752 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T14:21:13,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T14:21:13,754 instead of `find_packages(...)`/`find:`). 2023-09-09T14:21:13,755 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T14:21:13,756 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T14:21:13,758 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2023-09-09T14:21:13,759 already explicitly excluding 'Mikado.tests.fusion_test' via 2023-09-09T14:21:13,759 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T14:21:13,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T14:21:13,761 combination with a more fine grained `package-data` configuration. 2023-09-09T14:21:13,762 You can read more about "package data files" on setuptools documentation page: 2023-09-09T14:21:13,763 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T14:21:13,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T14:21:13,766 even if it does not contain any `.py` files. 2023-09-09T14:21:13,767 On the other hand, currently there is no concept of package data 2023-09-09T14:21:13,767 directory, all directories are treated like packages. 2023-09-09T14:21:13,767 ******************************************************************************** 2023-09-09T14:21:13,768 !! 2023-09-09T14:21:13,769 check.warn(importable) 2023-09-09T14:21:13,770 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:13,770 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:13,772 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:13,773 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:13,773 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:13,774 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,774 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,775 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,776 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,776 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,777 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:13,778 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:13,778 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:13,779 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:13,779 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-09T14:21:13,780 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,780 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,781 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,781 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,782 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,782 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,783 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,783 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,784 copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,786 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-09T14:21:13,788 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,790 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,792 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,794 copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,796 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,798 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-09T14:21:13,801 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,914 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,917 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,920 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,922 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,925 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,930 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,956 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,987 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,991 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,992 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,995 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,997 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:13,999 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:14,002 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:14,005 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:14,007 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:14,010 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-09T14:21:14,106 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,107 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,109 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,111 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,113 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,116 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,119 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,123 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,125 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,128 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,130 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,136 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,140 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,143 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,146 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,149 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,152 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,155 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,157 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,159 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,162 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,165 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,167 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,170 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,172 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,174 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,177 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,179 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,181 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,184 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,187 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,189 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,192 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,194 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,196 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,198 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,201 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,203 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,205 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,208 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,210 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,212 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,215 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,217 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,219 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,222 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,224 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,227 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,229 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,231 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,234 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,237 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,239 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,242 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,245 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,247 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,251 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,254 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,257 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,259 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,262 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,265 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,268 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,270 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,273 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,276 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,279 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,282 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,286 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,289 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,292 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,295 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,298 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,301 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,303 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,306 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-09T14:21:14,308 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T14:21:14,309 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T14:21:14,311 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T14:21:14,313 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-09T14:21:14,323 running build_ext 2023-09-09T14:21:14,329 building 'Mikado.utilities.overlap' extension 2023-09-09T14:21:14,330 creating build/temp.linux-armv7l-cpython-311 2023-09-09T14:21:14,330 creating build/temp.linux-armv7l-cpython-311/Mikado 2023-09-09T14:21:14,331 creating build/temp.linux-armv7l-cpython-311/Mikado/utilities 2023-09-09T14:21:14,332 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o 2023-09-09T14:21:18,328 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so 2023-09-09T14:21:18,431 building 'Mikado.scales.f1' extension 2023-09-09T14:21:18,432 creating build/temp.linux-armv7l-cpython-311/Mikado/scales 2023-09-09T14:21:18,432 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o 2023-09-09T14:21:21,730 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so 2023-09-09T14:21:21,830 building 'Mikado.scales.contrast' extension 2023-09-09T14:21:21,830 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o 2023-09-09T14:21:34,747 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so 2023-09-09T14:21:34,864 building 'Mikado.utilities.intervaltree' extension 2023-09-09T14:21:34,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o 2023-09-09T14:21:55,816 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so 2023-09-09T14:21:55,940 running build_scripts 2023-09-09T14:21:55,940 creating build/scripts-3.11 2023-09-09T14:21:55,942 copying and adjusting util/trim_long_introns.py -> build/scripts-3.11 2023-09-09T14:21:55,944 copying and adjusting util/split_fasta.py -> build/scripts-3.11 2023-09-09T14:21:55,945 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.11 2023-09-09T14:21:55,947 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.11 2023-09-09T14:21:55,948 copying and adjusting util/bam2gtf.py -> build/scripts-3.11 2023-09-09T14:21:55,950 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.11 2023-09-09T14:21:55,952 copying and adjusting util/asm_collect.py -> build/scripts-3.11 2023-09-09T14:21:55,954 copying and adjusting util/align_collect.py -> build/scripts-3.11 2023-09-09T14:21:55,955 copying and adjusting util/class_run.py -> build/scripts-3.11 2023-09-09T14:21:55,957 copying and adjusting util/create_model.py -> build/scripts-3.11 2023-09-09T14:21:55,959 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.11 2023-09-09T14:21:55,961 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.11 2023-09-09T14:21:55,963 copying and adjusting util/remove_from_embl.py -> build/scripts-3.11 2023-09-09T14:21:55,964 copying and adjusting util/analyse_metrics.py -> build/scripts-3.11 2023-09-09T14:21:55,965 copying and adjusting util/grep.py -> build/scripts-3.11 2023-09-09T14:21:55,967 copying and adjusting util/self_training.py -> build/scripts-3.11 2023-09-09T14:21:55,968 changing mode of build/scripts-3.11/trim_long_introns.py from 644 to 755 2023-09-09T14:21:55,969 changing mode of build/scripts-3.11/split_fasta.py from 644 to 755 2023-09-09T14:21:55,970 changing mode of build/scripts-3.11/sanitize_blast_db.py from 644 to 755 2023-09-09T14:21:55,970 changing mode of build/scripts-3.11/gffjunc_to_bed12.py from 644 to 755 2023-09-09T14:21:55,971 changing mode of build/scripts-3.11/bam2gtf.py from 644 to 755 2023-09-09T14:21:55,971 changing mode of build/scripts-3.11/getFastaFromIds.py from 644 to 755 2023-09-09T14:21:55,972 changing mode of build/scripts-3.11/asm_collect.py from 644 to 755 2023-09-09T14:21:55,973 changing mode of build/scripts-3.11/align_collect.py from 644 to 755 2023-09-09T14:21:55,973 changing mode of build/scripts-3.11/class_run.py from 644 to 755 2023-09-09T14:21:55,974 changing mode of build/scripts-3.11/create_model.py from 644 to 755 2023-09-09T14:21:55,974 changing mode of build/scripts-3.11/merge_junction_bed12.py from 644 to 755 2023-09-09T14:21:55,974 changing mode of build/scripts-3.11/add_transcript_feature_to_gtf.py from 644 to 755 2023-09-09T14:21:55,975 changing mode of build/scripts-3.11/remove_from_embl.py from 644 to 755 2023-09-09T14:21:55,975 changing mode of build/scripts-3.11/analyse_metrics.py from 644 to 755 2023-09-09T14:21:55,976 changing mode of build/scripts-3.11/grep.py from 644 to 755 2023-09-09T14:21:55,976 changing mode of build/scripts-3.11/self_training.py from 644 to 755 2023-09-09T14:21:56,000 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-09T14:21:56,000 !! 2023-09-09T14:21:56,001 ******************************************************************************** 2023-09-09T14:21:56,002 Please avoid running ``setup.py`` directly. 2023-09-09T14:21:56,002 Instead, use pypa/build, pypa/installer or other 2023-09-09T14:21:56,003 standards-based tools. 2023-09-09T14:21:56,004 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-09T14:21:56,004 ******************************************************************************** 2023-09-09T14:21:56,005 !! 2023-09-09T14:21:56,005 self.initialize_options() 2023-09-09T14:21:56,024 installing to build/bdist.linux-armv7l/wheel 2023-09-09T14:21:56,025 running install 2023-09-09T14:21:56,048 running install_lib 2023-09-09T14:21:56,072 creating build/bdist.linux-armv7l 2023-09-09T14:21:56,073 creating build/bdist.linux-armv7l/wheel 2023-09-09T14:21:56,074 creating build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T14:21:56,075 copying build/lib.linux-armv7l-cpython-311/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T14:21:56,077 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,079 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,082 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,085 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,086 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,088 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,090 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,094 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,096 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,098 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-09T14:21:56,101 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,102 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,105 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,121 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,128 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,129 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,131 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,133 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,152 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,154 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,156 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-09T14:21:56,161 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,162 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,164 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,167 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,168 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,171 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,174 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,176 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-09T14:21:56,179 copying build/lib.linux-armv7l-cpython-311/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-09T14:21:56,181 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,182 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,184 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,189 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,191 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,193 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,231 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,234 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,235 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,238 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,240 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,242 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,244 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,254 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,267 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-09T14:21:56,271 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,272 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,273 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,275 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,277 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,278 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,280 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,282 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,284 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,286 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,287 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/spombe.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-09T14:21:56,289 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,291 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,293 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,295 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,297 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,300 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,302 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-09T14:21:56,304 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T14:21:56,305 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T14:21:56,308 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T14:21:56,310 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-09T14:21:56,313 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T14:21:56,314 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T14:21:56,316 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T14:21:56,318 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T14:21:56,322 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-09T14:21:56,325 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,326 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,329 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,331 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,333 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,336 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-09T14:21:56,338 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,339 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,342 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,344 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,347 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,348 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,351 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,352 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,354 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,356 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,358 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,360 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,362 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,364 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,367 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,369 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-09T14:21:56,371 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,373 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-09T14:21:56,376 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,377 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,378 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/local.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,381 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,383 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,385 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,388 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,390 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-09T14:21:56,392 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T14:21:56,393 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T14:21:56,395 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T14:21:56,398 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T14:21:56,400 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-09T14:21:56,402 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,403 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,406 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,407 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,409 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,412 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,414 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,416 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-09T14:21:56,418 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T14:21:56,419 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T14:21:56,422 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T14:21:56,425 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T14:21:56,426 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-09T14:21:56,430 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,431 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,433 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,435 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,436 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,438 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,547 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,573 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,575 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,579 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,584 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,585 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,587 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,589 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,592 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,595 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,597 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,600 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,602 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,604 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,606 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,609 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,611 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,614 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,617 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,620 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,622 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,624 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,626 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,628 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,630 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,632 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,635 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,637 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,639 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,641 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,643 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,646 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,648 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,651 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,652 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,655 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,658 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,660 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,663 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,665 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,668 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,670 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,672 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,673 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,675 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,677 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,679 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,682 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,683 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,686 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,688 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,690 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,692 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,695 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,697 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,699 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,701 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,703 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,706 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,708 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,710 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,712 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,715 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,718 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,721 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,723 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,725 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,729 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,732 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,735 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,738 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,743 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,746 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,749 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,752 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,755 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,758 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,761 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,763 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,766 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-09T14:21:56,769 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,773 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,776 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,779 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,915 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,917 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,919 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,922 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,924 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,926 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,927 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,929 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,931 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,933 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,936 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,938 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,940 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,942 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,945 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,947 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,949 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,952 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,954 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,956 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,958 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,960 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,995 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,997 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:56,999 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:57,001 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T14:21:57,002 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T14:21:57,004 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T14:21:57,006 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-09T14:21:57,008 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:57,011 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:57,015 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:57,017 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-09T14:21:57,019 running install_egg_info 2023-09-09T14:21:57,050 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.0-py3.11.egg-info 2023-09-09T14:21:57,063 running install_scripts 2023-09-09T14:21:57,064 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.data 2023-09-09T14:21:57,065 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,066 copying build/scripts-3.11/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,068 copying build/scripts-3.11/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,070 copying build/scripts-3.11/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,071 copying build/scripts-3.11/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,073 copying build/scripts-3.11/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,075 copying build/scripts-3.11/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,077 copying build/scripts-3.11/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,079 copying build/scripts-3.11/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,080 copying build/scripts-3.11/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,082 copying build/scripts-3.11/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,085 copying build/scripts-3.11/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,087 copying build/scripts-3.11/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,089 copying build/scripts-3.11/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,090 copying build/scripts-3.11/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,092 copying build/scripts-3.11/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,094 copying build/scripts-3.11/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts 2023-09-09T14:21:57,096 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/trim_long_introns.py to 755 2023-09-09T14:21:57,096 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/split_fasta.py to 755 2023-09-09T14:21:57,097 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/sanitize_blast_db.py to 755 2023-09-09T14:21:57,097 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/gffjunc_to_bed12.py to 755 2023-09-09T14:21:57,098 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/bam2gtf.py to 755 2023-09-09T14:21:57,098 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/getFastaFromIds.py to 755 2023-09-09T14:21:57,099 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/asm_collect.py to 755 2023-09-09T14:21:57,100 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/align_collect.py to 755 2023-09-09T14:21:57,100 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/class_run.py to 755 2023-09-09T14:21:57,101 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/create_model.py to 755 2023-09-09T14:21:57,101 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/merge_junction_bed12.py to 755 2023-09-09T14:21:57,102 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/add_transcript_feature_to_gtf.py to 755 2023-09-09T14:21:57,102 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/remove_from_embl.py to 755 2023-09-09T14:21:57,103 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/analyse_metrics.py to 755 2023-09-09T14:21:57,103 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/grep.py to 755 2023-09-09T14:21:57,103 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.0.data/scripts/self_training.py to 755 2023-09-09T14:21:57,160 creating build/bdist.linux-armv7l/wheel/Mikado-1.0.dist-info/WHEEL 2023-09-09T14:21:57,163 creating '/tmp/pip-wheel-70udbkj6/Mikado-1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-09T14:21:57,165 adding 'Mikado/__init__.py' 2023-09-09T14:21:57,167 adding 'Mikado/exceptions.py' 2023-09-09T14:21:57,169 adding 'Mikado/configuration/__init__.py' 2023-09-09T14:21:57,172 adding 'Mikado/configuration/configuration_blueprint.json' 2023-09-09T14:21:57,175 adding 'Mikado/configuration/configurator.py' 2023-09-09T14:21:57,177 adding 'Mikado/configuration/daijin_configurator.py' 2023-09-09T14:21:57,178 adding 'Mikado/configuration/daijin_schema.json' 2023-09-09T14:21:57,180 adding 'Mikado/configuration/requirements_blueprint.json' 2023-09-09T14:21:57,181 adding 'Mikado/configuration/scoring_blueprint.json' 2023-09-09T14:21:57,183 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2023-09-09T14:21:57,184 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2023-09-09T14:21:57,185 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2023-09-09T14:21:57,187 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2023-09-09T14:21:57,188 adding 'Mikado/configuration/scoring_files/human.yaml' 2023-09-09T14:21:57,189 adding 'Mikado/configuration/scoring_files/insects.yaml' 2023-09-09T14:21:57,190 adding 'Mikado/configuration/scoring_files/plants.yaml' 2023-09-09T14:21:57,192 adding 'Mikado/configuration/scoring_files/spombe.yaml' 2023-09-09T14:21:57,193 adding 'Mikado/configuration/scoring_files/worm.yaml' 2023-09-09T14:21:57,196 adding 'Mikado/daijin/__init__.py' 2023-09-09T14:21:57,198 adding 'Mikado/daijin/example_config.yaml' 2023-09-09T14:21:57,199 adding 'Mikado/daijin/hpc.json' 2023-09-09T14:21:57,200 adding 'Mikado/daijin/hpc.yaml' 2023-09-09T14:21:57,201 adding 'Mikado/daijin/local.yaml' 2023-09-09T14:21:57,203 adding 'Mikado/daijin/mikado.snakefile' 2023-09-09T14:21:57,207 adding 'Mikado/daijin/tr.snakefile' 2023-09-09T14:21:57,209 adding 'Mikado/loci/__init__.py' 2023-09-09T14:21:57,215 adding 'Mikado/loci/abstractlocus.py' 2023-09-09T14:21:57,217 adding 'Mikado/loci/excluded.py' 2023-09-09T14:21:57,221 adding 'Mikado/loci/locus.py' 2023-09-09T14:21:57,222 adding 'Mikado/loci/monosublocus.py' 2023-09-09T14:21:57,224 adding 'Mikado/loci/monosublocusholder.py' 2023-09-09T14:21:57,227 adding 'Mikado/loci/reference_gene.py' 2023-09-09T14:21:57,229 adding 'Mikado/loci/sublocus.py' 2023-09-09T14:21:57,235 adding 'Mikado/loci/superlocus.py' 2023-09-09T14:21:57,238 adding 'Mikado/parsers/GFF.py' 2023-09-09T14:21:57,239 adding 'Mikado/parsers/GTF.py' 2023-09-09T14:21:57,241 adding 'Mikado/parsers/__init__.py' 2023-09-09T14:21:57,244 adding 'Mikado/parsers/bed12.py' 2023-09-09T14:21:57,246 adding 'Mikado/parsers/blast_utils.py' 2023-09-09T14:21:57,251 adding 'Mikado/parsers/blast_xml.py' 2023-09-09T14:21:57,253 adding 'Mikado/parsers/gfannotation.py' 2023-09-09T14:21:57,254 adding 'Mikado/picking/__init__.py' 2023-09-09T14:21:57,259 adding 'Mikado/picking/loci_processer.py' 2023-09-09T14:21:57,264 adding 'Mikado/picking/picker.py' 2023-09-09T14:21:57,266 adding 'Mikado/preparation/__init__.py' 2023-09-09T14:21:57,268 adding 'Mikado/preparation/annotation_parser.py' 2023-09-09T14:21:57,269 adding 'Mikado/preparation/checking.py' 2023-09-09T14:21:57,272 adding 'Mikado/preparation/prepare.py' 2023-09-09T14:21:57,273 adding 'Mikado/scales/__init__.py' 2023-09-09T14:21:57,277 adding 'Mikado/scales/accountant.py' 2023-09-09T14:21:57,282 adding 'Mikado/scales/assigner.py' 2023-09-09T14:21:57,284 adding 'Mikado/scales/class_codes.py' 2023-09-09T14:21:57,287 adding 'Mikado/scales/compare.py' 2023-09-09T14:21:57,331 adding 'Mikado/scales/contrast.c' 2023-09-09T14:21:57,443 adding 'Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T14:21:57,449 adding 'Mikado/scales/contrast.pxd' 2023-09-09T14:21:57,451 adding 'Mikado/scales/contrast.pyx' 2023-09-09T14:21:57,476 adding 'Mikado/scales/f1.c' 2023-09-09T14:21:57,516 adding 'Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T14:21:57,519 adding 'Mikado/scales/f1.pxd' 2023-09-09T14:21:57,520 adding 'Mikado/scales/f1.pyx' 2023-09-09T14:21:57,521 adding 'Mikado/scales/resultstorer.py' 2023-09-09T14:21:57,523 adding 'Mikado/serializers/__init__.py' 2023-09-09T14:21:57,524 adding 'Mikado/serializers/external.py' 2023-09-09T14:21:57,526 adding 'Mikado/serializers/junction.py' 2023-09-09T14:21:57,528 adding 'Mikado/serializers/orf.py' 2023-09-09T14:21:57,530 adding 'Mikado/serializers/blast_serializer/__init__.py' 2023-09-09T14:21:57,531 adding 'Mikado/serializers/blast_serializer/hit.py' 2023-09-09T14:21:57,533 adding 'Mikado/serializers/blast_serializer/hsp.py' 2023-09-09T14:21:57,534 adding 'Mikado/serializers/blast_serializer/query.py' 2023-09-09T14:21:57,535 adding 'Mikado/serializers/blast_serializer/target.py' 2023-09-09T14:21:57,537 adding 'Mikado/serializers/blast_serializer/utils.py' 2023-09-09T14:21:57,541 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2023-09-09T14:21:57,543 adding 'Mikado/subprograms/__init__.py' 2023-09-09T14:21:57,544 adding 'Mikado/subprograms/__main__.py' 2023-09-09T14:21:57,545 adding 'Mikado/subprograms/compare.py' 2023-09-09T14:21:57,548 adding 'Mikado/subprograms/configure.py' 2023-09-09T14:21:57,549 adding 'Mikado/subprograms/pick.py' 2023-09-09T14:21:57,551 adding 'Mikado/subprograms/prepare.py' 2023-09-09T14:21:57,554 adding 'Mikado/subprograms/serialise.py' 2023-09-09T14:21:57,556 adding 'Mikado/subprograms/util/__init__.py' 2023-09-09T14:21:57,557 adding 'Mikado/subprograms/util/awk_gtf.py' 2023-09-09T14:21:57,558 adding 'Mikado/subprograms/util/class_codes.py' 2023-09-09T14:21:57,560 adding 'Mikado/subprograms/util/convert.py' 2023-09-09T14:21:57,561 adding 'Mikado/subprograms/util/grep.py' 2023-09-09T14:21:57,563 adding 'Mikado/subprograms/util/merge_blast.py' 2023-09-09T14:21:57,564 adding 'Mikado/subprograms/util/metrics.py' 2023-09-09T14:21:57,567 adding 'Mikado/subprograms/util/stats.py' 2023-09-09T14:21:57,569 adding 'Mikado/subprograms/util/trim.py' 2023-09-09T14:21:57,571 adding 'Mikado/tests/__init__.py' 2023-09-09T14:21:57,574 adding 'Mikado/tests/assigner_tester.py' 2023-09-09T14:21:58,462 adding 'Mikado/tests/chr5.fas.gz' 2023-09-09T14:21:58,528 adding 'Mikado/tests/configuration.yaml' 2023-09-09T14:21:58,530 adding 'Mikado/tests/cufflinks.gtf' 2023-09-09T14:21:58,532 adding 'Mikado/tests/genome.fai' 2023-09-09T14:21:58,533 adding 'Mikado/tests/intervaltree_tests.py' 2023-09-09T14:21:58,539 adding 'Mikado/tests/junctions.bed' 2023-09-09T14:21:58,544 adding 'Mikado/tests/locus_tester.py' 2023-09-09T14:21:58,569 adding 'Mikado/tests/mikado.blast.asn.gz' 2023-09-09T14:21:58,624 adding 'Mikado/tests/mikado.blast.xml' 2023-09-09T14:21:58,896 adding 'Mikado/tests/mikado.db' 2023-09-09T14:21:58,914 adding 'Mikado/tests/mikado_prepared.gtf' 2023-09-09T14:21:58,920 adding 'Mikado/tests/orf_tester.py' 2023-09-09T14:21:58,921 adding 'Mikado/tests/parser_testing.py' 2023-09-09T14:21:58,923 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2023-09-09T14:21:58,924 adding 'Mikado/tests/plants.yaml~' 2023-09-09T14:21:58,925 adding 'Mikado/tests/scoring_only_cds.yaml' 2023-09-09T14:21:58,926 adding 'Mikado/tests/test_blast_related.py' 2023-09-09T14:21:58,927 adding 'Mikado/tests/test_clique_methods.py' 2023-09-09T14:21:58,929 adding 'Mikado/tests/test_db_utils.py' 2023-09-09T14:21:58,930 adding 'Mikado/tests/test_external_scores.py' 2023-09-09T14:21:58,931 adding 'Mikado/tests/test_gene.py' 2023-09-09T14:21:58,932 adding 'Mikado/tests/test_invalid_orfs.py' 2023-09-09T14:21:58,934 adding 'Mikado/tests/test_json.py' 2023-09-09T14:21:58,935 adding 'Mikado/tests/test_metrics.py' 2023-09-09T14:21:58,936 adding 'Mikado/tests/test_modifications.py' 2023-09-09T14:21:58,938 adding 'Mikado/tests/test_serialisation.py' 2023-09-09T14:21:58,939 adding 'Mikado/tests/test_splitting.py' 2023-09-09T14:21:58,942 adding 'Mikado/tests/test_system_calls.py' 2023-09-09T14:21:58,944 adding 'Mikado/tests/test_transcript_checker.py' 2023-09-09T14:21:58,946 adding 'Mikado/tests/test_transcript_methods.py' 2023-09-09T14:21:58,948 adding 'Mikado/tests/transcript_tester_negative.py' 2023-09-09T14:21:58,952 adding 'Mikado/tests/transcript_tester_positive.py' 2023-09-09T14:21:58,955 adding 'Mikado/tests/transcript_tester_single.py' 2023-09-09T14:21:58,957 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2023-09-09T14:21:58,959 adding 'Mikado/tests/trinity.gff3' 2023-09-09T14:21:58,962 adding 'Mikado/tests/trinity.gtf' 2023-09-09T14:21:58,964 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2023-09-09T14:21:58,965 adding 'Mikado/tests/trinity_stats.txt' 2023-09-09T14:21:59,692 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2023-09-09T14:21:59,746 adding 'Mikado/tests/utilities_tester.py' 2023-09-09T14:21:59,749 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2023-09-09T14:21:59,750 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2023-09-09T14:21:59,752 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2023-09-09T14:21:59,756 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2023-09-09T14:21:59,760 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2023-09-09T14:21:59,764 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2023-09-09T14:21:59,767 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2023-09-09T14:21:59,769 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2023-09-09T14:21:59,771 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2023-09-09T14:21:59,777 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2023-09-09T14:21:59,784 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2023-09-09T14:21:59,791 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2023-09-09T14:21:59,797 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2023-09-09T14:21:59,803 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2023-09-09T14:21:59,809 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2023-09-09T14:21:59,810 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2023-09-09T14:21:59,812 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2023-09-09T14:21:59,813 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2023-09-09T14:21:59,815 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2023-09-09T14:21:59,816 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2023-09-09T14:21:59,819 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2023-09-09T14:21:59,821 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2023-09-09T14:21:59,822 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2023-09-09T14:21:59,824 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2023-09-09T14:21:59,825 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2023-09-09T14:21:59,826 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2023-09-09T14:21:59,828 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2023-09-09T14:21:59,829 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2023-09-09T14:21:59,831 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2023-09-09T14:21:59,833 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2023-09-09T14:21:59,834 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2023-09-09T14:21:59,835 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2023-09-09T14:21:59,836 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2023-09-09T14:21:59,837 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2023-09-09T14:21:59,838 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2023-09-09T14:21:59,840 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2023-09-09T14:21:59,841 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2023-09-09T14:21:59,843 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2023-09-09T14:21:59,844 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2023-09-09T14:21:59,846 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2023-09-09T14:21:59,847 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2023-09-09T14:21:59,849 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2023-09-09T14:21:59,850 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2023-09-09T14:21:59,852 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2023-09-09T14:21:59,853 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2023-09-09T14:21:59,855 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2023-09-09T14:21:59,856 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2023-09-09T14:21:59,858 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2023-09-09T14:21:59,859 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2023-09-09T14:21:59,861 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2023-09-09T14:21:59,863 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2023-09-09T14:21:59,865 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2023-09-09T14:21:59,867 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2023-09-09T14:21:59,869 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2023-09-09T14:21:59,873 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2023-09-09T14:21:59,877 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2023-09-09T14:21:59,881 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2023-09-09T14:21:59,883 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2023-09-09T14:21:59,885 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2023-09-09T14:21:59,887 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2023-09-09T14:21:59,889 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2023-09-09T14:21:59,892 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2023-09-09T14:21:59,894 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2023-09-09T14:21:59,898 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2023-09-09T14:21:59,901 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2023-09-09T14:21:59,904 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2023-09-09T14:21:59,910 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2023-09-09T14:21:59,915 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2023-09-09T14:21:59,920 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2023-09-09T14:21:59,924 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2023-09-09T14:21:59,929 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2023-09-09T14:21:59,932 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2023-09-09T14:21:59,934 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2023-09-09T14:21:59,936 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2023-09-09T14:21:59,937 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2023-09-09T14:21:59,939 adding 'Mikado/tests/fusion_test/fusion_test.log' 2023-09-09T14:21:59,940 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2023-09-09T14:21:59,941 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2023-09-09T14:21:59,943 adding 'Mikado/transcripts/__init__.py' 2023-09-09T14:21:59,945 adding 'Mikado/transcripts/clique_methods.py' 2023-09-09T14:21:59,955 adding 'Mikado/transcripts/transcript.py' 2023-09-09T14:21:59,958 adding 'Mikado/transcripts/transcriptchecker.py' 2023-09-09T14:21:59,960 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2023-09-09T14:21:59,963 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2023-09-09T14:21:59,965 adding 'Mikado/transcripts/transcript_methods/printing.py' 2023-09-09T14:21:59,968 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2023-09-09T14:21:59,972 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2023-09-09T14:21:59,975 adding 'Mikado/utilities/__init__.py' 2023-09-09T14:21:59,976 adding 'Mikado/utilities/dbutils.py' 2023-09-09T14:22:00,042 adding 'Mikado/utilities/intervaltree.c' 2023-09-09T14:22:00,226 adding 'Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T14:22:00,236 adding 'Mikado/utilities/intervaltree.pyx' 2023-09-09T14:22:00,237 adding 'Mikado/utilities/log_utils.py' 2023-09-09T14:22:00,263 adding 'Mikado/utilities/overlap.c' 2023-09-09T14:22:00,309 adding 'Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so' 2023-09-09T14:22:00,312 adding 'Mikado/utilities/overlap.pxd' 2023-09-09T14:22:00,313 adding 'Mikado/utilities/overlap.pyx' 2023-09-09T14:22:00,315 adding 'Mikado-1.0.data/scripts/add_transcript_feature_to_gtf.py' 2023-09-09T14:22:00,317 adding 'Mikado-1.0.data/scripts/align_collect.py' 2023-09-09T14:22:00,318 adding 'Mikado-1.0.data/scripts/analyse_metrics.py' 2023-09-09T14:22:00,319 adding 'Mikado-1.0.data/scripts/asm_collect.py' 2023-09-09T14:22:00,321 adding 'Mikado-1.0.data/scripts/bam2gtf.py' 2023-09-09T14:22:00,322 adding 'Mikado-1.0.data/scripts/class_run.py' 2023-09-09T14:22:00,324 adding 'Mikado-1.0.data/scripts/create_model.py' 2023-09-09T14:22:00,325 adding 'Mikado-1.0.data/scripts/getFastaFromIds.py' 2023-09-09T14:22:00,327 adding 'Mikado-1.0.data/scripts/gffjunc_to_bed12.py' 2023-09-09T14:22:00,328 adding 'Mikado-1.0.data/scripts/grep.py' 2023-09-09T14:22:00,329 adding 'Mikado-1.0.data/scripts/merge_junction_bed12.py' 2023-09-09T14:22:00,331 adding 'Mikado-1.0.data/scripts/remove_from_embl.py' 2023-09-09T14:22:00,332 adding 'Mikado-1.0.data/scripts/sanitize_blast_db.py' 2023-09-09T14:22:00,334 adding 'Mikado-1.0.data/scripts/self_training.py' 2023-09-09T14:22:00,335 adding 'Mikado-1.0.data/scripts/split_fasta.py' 2023-09-09T14:22:00,336 adding 'Mikado-1.0.data/scripts/trim_long_introns.py' 2023-09-09T14:22:00,339 adding 'Mikado-1.0.dist-info/AUTHORS' 2023-09-09T14:22:00,340 adding 'Mikado-1.0.dist-info/METADATA' 2023-09-09T14:22:00,341 adding 'Mikado-1.0.dist-info/WHEEL' 2023-09-09T14:22:00,342 adding 'Mikado-1.0.dist-info/entry_points.txt' 2023-09-09T14:22:00,342 adding 'Mikado-1.0.dist-info/top_level.txt' 2023-09-09T14:22:00,346 adding 'Mikado-1.0.dist-info/RECORD' 2023-09-09T14:22:00,534 removing build/bdist.linux-armv7l/wheel 2023-09-09T14:22:00,741 Building wheel for mikado (setup.py): finished with status 'done' 2023-09-09T14:22:00,947 Created wheel for mikado: filename=Mikado-1.0-cp311-cp311-linux_armv7l.whl size=17601469 sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb 2023-09-09T14:22:00,949 Stored in directory: /tmp/pip-ephem-wheel-cache-gmkphpzx/wheels/73/44/8a/e60167f9b2e0e22fddd605929a39c0e81d53f77449eb4d6c70 2023-09-09T14:22:00,972 Successfully built mikado 2023-09-09T14:22:01,408 Removed build tracker: '/tmp/pip-build-tracker-3nw94xge'