2023-09-09T19:11:15,916 Created temporary directory: /tmp/pip-build-tracker-kur_fam8
2023-09-09T19:11:15,918 Initialized build tracking at /tmp/pip-build-tracker-kur_fam8
2023-09-09T19:11:15,918 Created build tracker: /tmp/pip-build-tracker-kur_fam8
2023-09-09T19:11:15,919 Entered build tracker: /tmp/pip-build-tracker-kur_fam8
2023-09-09T19:11:15,919 Created temporary directory: /tmp/pip-wheel-3dkpmyt7
2023-09-09T19:11:15,922 Created temporary directory: /tmp/pip-ephem-wheel-cache-m97gcfox
2023-09-09T19:11:15,944 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-09T19:11:15,948 2 location(s) to search for versions of mitre:
2023-09-09T19:11:15,948 * https://pypi.org/simple/mitre/
2023-09-09T19:11:15,948 * https://www.piwheels.org/simple/mitre/
2023-09-09T19:11:15,949 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2023-09-09T19:11:15,950 Getting page https://pypi.org/simple/mitre/
2023-09-09T19:11:15,951 Found index url https://pypi.org/simple/
2023-09-09T19:11:16,211 Fetched page https://pypi.org/simple/mitre/ as application/vnd.pypi.simple.v1+json
2023-09-09T19:11:16,214   Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,215   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b1
2023-09-09T19:11:16,215   Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,216   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b2
2023-09-09T19:11:16,216   Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,217   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b3
2023-09-09T19:11:16,218   Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,219   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b4
2023-09-09T19:11:16,219   Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,220   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/mitre/)
2023-09-09T19:11:16,221   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b5
2023-09-09T19:11:16,221   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz (from https://pypi.org/simple/mitre/), version: 1.0b1
2023-09-09T19:11:16,222 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitre/
2023-09-09T19:11:16,223 Getting page https://www.piwheels.org/simple/mitre/
2023-09-09T19:11:16,225 Found index url https://www.piwheels.org/simple/
2023-09-09T19:11:16,504 Fetched page https://www.piwheels.org/simple/mitre/ as text/html
2023-09-09T19:11:16,521   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv6l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,522   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv7l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,523   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv6l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,524   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv7l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,524   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp37-cp37m-linux_armv6l.whl#sha256=c3282d147e0962e11d98d3b8742fe05a92e0060d36b7bda86435fdfc109d6ff3 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,525   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp37-cp37m-linux_armv7l.whl#sha256=c3282d147e0962e11d98d3b8742fe05a92e0060d36b7bda86435fdfc109d6ff3 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,526   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv6l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,526   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv7l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,527   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv6l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,528   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv7l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,529   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv6l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,530   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv7l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,530   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv6l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,531   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv7l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,532   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp39-cp39-linux_armv6l.whl#sha256=e357a5e5bb99e15de1e48b038d1e7e529157a982855c13bb9104554f3a6a4b96 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,532   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp39-cp39-linux_armv7l.whl#sha256=e357a5e5bb99e15de1e48b038d1e7e529157a982855c13bb9104554f3a6a4b96 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,533   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv6l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,534   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv7l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,535   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv6l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,535   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv7l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,536   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv6l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,536   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv7l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,537   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv6l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,537   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv7l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,538   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv6l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,539   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv7l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,540   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv6l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,540   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv7l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,541   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv6l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,542   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv7l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,542   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv6l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,544   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv7l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,544   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv6l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,545   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv7l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,545   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv6l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,546   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv7l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,546   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv6l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,547   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv7l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,548   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv6l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,548   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv7l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,549   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv6l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,550   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv7l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,551   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv6l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,551   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv7l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,552   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv6l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,553   Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv7l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/)
2023-09-09T19:11:16,554 Skipping link: not a file: https://www.piwheels.org/simple/mitre/
2023-09-09T19:11:16,554 Skipping link: not a file: https://pypi.org/simple/mitre/
2023-09-09T19:11:16,582 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2023-09-09T19:11:16,607 Collecting mitre==0.9b1
2023-09-09T19:11:16,610   Created temporary directory: /tmp/pip-unpack-jfjs3c4l
2023-09-09T19:11:17,541   Downloading mitre-0.9b1.tar.gz (9.5 MB)
2023-09-09T19:11:22,032   Added mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz to build tracker '/tmp/pip-build-tracker-kur_fam8'
2023-09-09T19:11:22,033   Running setup.py (path:/tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py) egg_info for package mitre
2023-09-09T19:11:22,034   Created temporary directory: /tmp/pip-pip-egg-info-rpr9cgez
2023-09-09T19:11:22,035   Preparing metadata (setup.py): started
2023-09-09T19:11:22,036   Running command python setup.py egg_info
2023-09-09T19:11:22,670   /tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
2023-09-09T19:11:22,670     import pkg_resources
2023-09-09T19:11:23,008   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta1' to '0.9b1'
2023-09-09T19:11:23,009     self.metadata.version = self._normalize_version(
2023-09-09T19:11:23,051   running egg_info
2023-09-09T19:11:23,052   creating /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info
2023-09-09T19:11:23,075   writing /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/PKG-INFO
2023-09-09T19:11:23,079   writing dependency_links to /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/dependency_links.txt
2023-09-09T19:11:23,081   writing entry points to /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/entry_points.txt
2023-09-09T19:11:23,082   writing requirements to /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/requires.txt
2023-09-09T19:11:23,083   writing top-level names to /tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/top_level.txt
2023-09-09T19:11:23,084   writing manifest file '/tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/SOURCES.txt'
2023-09-09T19:11:23,165   reading manifest file '/tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/SOURCES.txt'
2023-09-09T19:11:23,167   reading manifest template 'MANIFEST.in'
2023-09-09T19:11:23,187   adding license file 'LICENSE.txt'
2023-09-09T19:11:23,191   writing manifest file '/tmp/pip-pip-egg-info-rpr9cgez/mitre.egg-info/SOURCES.txt'
2023-09-09T19:11:23,300   Preparing metadata (setup.py): finished with status 'done'
2023-09-09T19:11:23,304   Source in /tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2 has version 0.9b1, which satisfies requirement mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz
2023-09-09T19:11:23,305   Removed mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz from build tracker '/tmp/pip-build-tracker-kur_fam8'
2023-09-09T19:11:23,310 Created temporary directory: /tmp/pip-unpack-mtr8txd_
2023-09-09T19:11:23,311 Created temporary directory: /tmp/pip-unpack-i_6k66qk
2023-09-09T19:11:23,322 Building wheels for collected packages: mitre
2023-09-09T19:11:23,326   Created temporary directory: /tmp/pip-wheel-blibfjoa
2023-09-09T19:11:23,327   Building wheel for mitre (setup.py): started
2023-09-09T19:11:23,328   Destination directory: /tmp/pip-wheel-blibfjoa
2023-09-09T19:11:23,329   Running command python setup.py bdist_wheel
2023-09-09T19:11:23,939   /tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
2023-09-09T19:11:23,940     import pkg_resources
2023-09-09T19:11:24,295   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta1' to '0.9b1'
2023-09-09T19:11:24,296     self.metadata.version = self._normalize_version(
2023-09-09T19:11:24,335   running bdist_wheel
2023-09-09T19:11:24,409   running build
2023-09-09T19:11:24,409   running build_py
2023-09-09T19:11:24,436   creating build
2023-09-09T19:11:24,437   creating build/lib.linux-armv7l-cpython-311
2023-09-09T19:11:24,438   creating build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,439   copying mitre/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,441   copying mitre/command_line.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,442   copying mitre/test.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,444   copying mitre/logit_test.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,446   copying mitre/main.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,450   copying mitre/logit_rules.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,453   copying mitre/visualization.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,455   copying mitre/key_comparison.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,457   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,459   copying mitre/rules.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,464   copying mitre/posterior.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,469   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,471   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,472   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:24,475   creating build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,476   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,478   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,479   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,481   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,483   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,485   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,487   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing
2023-09-09T19:11:24,490   creating build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,491   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,493   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,495   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,498   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,501   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data
2023-09-09T19:11:24,504   creating build/lib.linux-armv7l-cpython-311/mitre/trees
2023-09-09T19:11:24,505   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-cpython-311/mitre/trees
2023-09-09T19:11:24,507   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/trees
2023-09-09T19:11:24,509   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-cpython-311/mitre/trees
2023-09-09T19:11:24,511   copying mitre/trees/priors.py -> build/lib.linux-armv7l-cpython-311/mitre/trees
2023-09-09T19:11:24,513   creating build/lib.linux-armv7l-cpython-311/mitre/comparison_methods
2023-09-09T19:11:24,514   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/comparison_methods
2023-09-09T19:11:24,516   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-cpython-311/mitre/comparison_methods
2023-09-09T19:11:24,518   running egg_info
2023-09-09T19:11:24,578   writing mitre.egg-info/PKG-INFO
2023-09-09T19:11:24,582   writing dependency_links to mitre.egg-info/dependency_links.txt
2023-09-09T19:11:24,584   writing entry points to mitre.egg-info/entry_points.txt
2023-09-09T19:11:24,585   writing requirements to mitre.egg-info/requires.txt
2023-09-09T19:11:24,586   writing top-level names to mitre.egg-info/top_level.txt
2023-09-09T19:11:24,616   reading manifest file 'mitre.egg-info/SOURCES.txt'
2023-09-09T19:11:24,620   reading manifest template 'MANIFEST.in'
2023-09-09T19:11:24,639   adding license file 'LICENSE.txt'
2023-09-09T19:11:24,644   writing manifest file 'mitre.egg-info/SOURCES.txt'
2023-09-09T19:11:24,647   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data' is absent from the `packages` configuration.
2023-09-09T19:11:24,647   !!

2023-09-09T19:11:24,648           ********************************************************************************
2023-09-09T19:11:24,649           ############################
2023-09-09T19:11:24,649           # Package would be ignored #
2023-09-09T19:11:24,650           ############################
2023-09-09T19:11:24,651           Python recognizes 'mitre.example_data' as an importable package[^1],
2023-09-09T19:11:24,652           but it is absent from setuptools' `packages` configuration.

2023-09-09T19:11:24,653           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-09T19:11:24,653           package, please make sure that 'mitre.example_data' is explicitly added
2023-09-09T19:11:24,654           to the `packages` configuration field.

2023-09-09T19:11:24,655           Alternatively, you can also rely on setuptools' discovery methods
2023-09-09T19:11:24,656           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-09T19:11:24,656           instead of `find_packages(...)`/`find:`).

2023-09-09T19:11:24,657           You can read more about "package discovery" on setuptools documentation page:

2023-09-09T19:11:24,659           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-09T19:11:24,660           If you don't want 'mitre.example_data' to be distributed and are
2023-09-09T19:11:24,660           already explicitly excluding 'mitre.example_data' via
2023-09-09T19:11:24,661           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-09T19:11:24,661           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-09T19:11:24,662           combination with a more fine grained `package-data` configuration.

2023-09-09T19:11:24,663           You can read more about "package data files" on setuptools documentation page:

2023-09-09T19:11:24,664           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-09T19:11:24,666           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-09T19:11:24,669                 even if it does not contain any `.py` files.
2023-09-09T19:11:24,671                 On the other hand, currently there is no concept of package data
2023-09-09T19:11:24,671                 directory, all directories are treated like packages.
2023-09-09T19:11:24,672           ********************************************************************************

2023-09-09T19:11:24,673   !!
2023-09-09T19:11:24,674     check.warn(importable)
2023-09-09T19:11:24,674   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.bokulich' is absent from the `packages` configuration.
2023-09-09T19:11:24,675   !!

2023-09-09T19:11:24,676           ********************************************************************************
2023-09-09T19:11:24,676           ############################
2023-09-09T19:11:24,676           # Package would be ignored #
2023-09-09T19:11:24,677           ############################
2023-09-09T19:11:24,677           Python recognizes 'mitre.example_data.bokulich' as an importable package[^1],
2023-09-09T19:11:24,678           but it is absent from setuptools' `packages` configuration.

2023-09-09T19:11:24,679           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-09T19:11:24,680           package, please make sure that 'mitre.example_data.bokulich' is explicitly added
2023-09-09T19:11:24,680           to the `packages` configuration field.

2023-09-09T19:11:24,681           Alternatively, you can also rely on setuptools' discovery methods
2023-09-09T19:11:24,681           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-09T19:11:24,682           instead of `find_packages(...)`/`find:`).

2023-09-09T19:11:24,683           You can read more about "package discovery" on setuptools documentation page:

2023-09-09T19:11:24,684           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-09T19:11:24,685           If you don't want 'mitre.example_data.bokulich' to be distributed and are
2023-09-09T19:11:24,685           already explicitly excluding 'mitre.example_data.bokulich' via
2023-09-09T19:11:24,686           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-09T19:11:24,686           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-09T19:11:24,687           combination with a more fine grained `package-data` configuration.

2023-09-09T19:11:24,688           You can read more about "package data files" on setuptools documentation page:

2023-09-09T19:11:24,688           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-09T19:11:24,690           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-09T19:11:24,691                 even if it does not contain any `.py` files.
2023-09-09T19:11:24,691                 On the other hand, currently there is no concept of package data
2023-09-09T19:11:24,692                 directory, all directories are treated like packages.
2023-09-09T19:11:24,693           ********************************************************************************

2023-09-09T19:11:24,694   !!
2023-09-09T19:11:24,694     check.warn(importable)
2023-09-09T19:11:24,695   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.david' is absent from the `packages` configuration.
2023-09-09T19:11:24,695   !!

2023-09-09T19:11:24,696           ********************************************************************************
2023-09-09T19:11:24,697           ############################
2023-09-09T19:11:24,697           # Package would be ignored #
2023-09-09T19:11:24,698           ############################
2023-09-09T19:11:24,699           Python recognizes 'mitre.example_data.david' as an importable package[^1],
2023-09-09T19:11:24,699           but it is absent from setuptools' `packages` configuration.

2023-09-09T19:11:24,700           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-09T19:11:24,701           package, please make sure that 'mitre.example_data.david' is explicitly added
2023-09-09T19:11:24,702           to the `packages` configuration field.

2023-09-09T19:11:24,703           Alternatively, you can also rely on setuptools' discovery methods
2023-09-09T19:11:24,703           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-09T19:11:24,704           instead of `find_packages(...)`/`find:`).

2023-09-09T19:11:24,705           You can read more about "package discovery" on setuptools documentation page:

2023-09-09T19:11:24,706           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-09T19:11:24,707           If you don't want 'mitre.example_data.david' to be distributed and are
2023-09-09T19:11:24,707           already explicitly excluding 'mitre.example_data.david' via
2023-09-09T19:11:24,708           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-09T19:11:24,708           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-09T19:11:24,709           combination with a more fine grained `package-data` configuration.

2023-09-09T19:11:24,710           You can read more about "package data files" on setuptools documentation page:

2023-09-09T19:11:24,710           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-09T19:11:24,712           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-09T19:11:24,713                 even if it does not contain any `.py` files.
2023-09-09T19:11:24,713                 On the other hand, currently there is no concept of package data
2023-09-09T19:11:24,714                 directory, all directories are treated like packages.
2023-09-09T19:11:24,714           ********************************************************************************

2023-09-09T19:11:24,715   !!
2023-09-09T19:11:24,716     check.warn(importable)
2023-09-09T19:11:24,716   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.digiulio' is absent from the `packages` configuration.
2023-09-09T19:11:24,717   !!

2023-09-09T19:11:24,718           ********************************************************************************
2023-09-09T19:11:24,719           ############################
2023-09-09T19:11:24,719           # Package would be ignored #
2023-09-09T19:11:24,720           ############################
2023-09-09T19:11:24,721           Python recognizes 'mitre.example_data.digiulio' as an importable package[^1],
2023-09-09T19:11:24,721           but it is absent from setuptools' `packages` configuration.

2023-09-09T19:11:24,722           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-09T19:11:24,723           package, please make sure that 'mitre.example_data.digiulio' is explicitly added
2023-09-09T19:11:24,724           to the `packages` configuration field.

2023-09-09T19:11:24,725           Alternatively, you can also rely on setuptools' discovery methods
2023-09-09T19:11:24,725           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-09T19:11:24,726           instead of `find_packages(...)`/`find:`).

2023-09-09T19:11:24,727           You can read more about "package discovery" on setuptools documentation page:

2023-09-09T19:11:24,728           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-09T19:11:24,729           If you don't want 'mitre.example_data.digiulio' to be distributed and are
2023-09-09T19:11:24,730           already explicitly excluding 'mitre.example_data.digiulio' via
2023-09-09T19:11:24,730           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-09T19:11:24,731           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-09T19:11:24,731           combination with a more fine grained `package-data` configuration.

2023-09-09T19:11:24,732           You can read more about "package data files" on setuptools documentation page:

2023-09-09T19:11:24,734           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-09T19:11:24,736           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-09T19:11:24,736                 even if it does not contain any `.py` files.
2023-09-09T19:11:24,737                 On the other hand, currently there is no concept of package data
2023-09-09T19:11:24,737                 directory, all directories are treated like packages.
2023-09-09T19:11:24,737           ********************************************************************************

2023-09-09T19:11:24,738   !!
2023-09-09T19:11:24,739     check.warn(importable)
2023-09-09T19:11:24,739   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.karelia' is absent from the `packages` configuration.
2023-09-09T19:11:24,740   !!

2023-09-09T19:11:24,740           ********************************************************************************
2023-09-09T19:11:24,741           ############################
2023-09-09T19:11:24,741           # Package would be ignored #
2023-09-09T19:11:24,742           ############################
2023-09-09T19:11:24,742           Python recognizes 'mitre.example_data.karelia' as an importable package[^1],
2023-09-09T19:11:24,761           but it is absent from setuptools' `packages` configuration.

2023-09-09T19:11:24,802           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-09T19:11:24,832           package, please make sure that 'mitre.example_data.karelia' is explicitly added
2023-09-09T19:11:24,860           to the `packages` configuration field.

2023-09-09T19:11:24,916           Alternatively, you can also rely on setuptools' discovery methods
2023-09-09T19:11:24,917           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-09T19:11:24,918           instead of `find_packages(...)`/`find:`).

2023-09-09T19:11:24,920           You can read more about "package discovery" on setuptools documentation page:

2023-09-09T19:11:24,922           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-09T19:11:24,924           If you don't want 'mitre.example_data.karelia' to be distributed and are
2023-09-09T19:11:24,925           already explicitly excluding 'mitre.example_data.karelia' via
2023-09-09T19:11:24,926           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-09T19:11:24,934           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-09T19:11:24,944           combination with a more fine grained `package-data` configuration.

2023-09-09T19:11:24,957           You can read more about "package data files" on setuptools documentation page:

2023-09-09T19:11:24,959           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-09T19:11:24,962           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-09T19:11:24,973                 even if it does not contain any `.py` files.
2023-09-09T19:11:24,974                 On the other hand, currently there is no concept of package data
2023-09-09T19:11:24,975                 directory, all directories are treated like packages.
2023-09-09T19:11:24,976           ********************************************************************************

2023-09-09T19:11:24,983   !!
2023-09-09T19:11:25,010     check.warn(importable)
2023-09-09T19:11:25,050   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:25,053   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:25,055   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:25,056   copying mitre/template.html -> build/lib.linux-armv7l-cpython-311/mitre
2023-09-09T19:11:25,057   creating build/lib.linux-armv7l-cpython-311/mitre/example_data
2023-09-09T19:11:25,057   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-cpython-311/mitre/example_data
2023-09-09T19:11:25,058   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-cpython-311/mitre/example_data
2023-09-09T19:11:25,058   creating build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,059   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,060   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,061   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,061   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,062   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,065   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,067   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,069   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,092   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,094   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich
2023-09-09T19:11:25,122   creating build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,124   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,266   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,267   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,300   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,463   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,466   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,474   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,529   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,531   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david
2023-09-09T19:11:25,557   creating build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,558   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,646   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,664   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,692   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,695   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,702   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,717   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,719   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,745   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio
2023-09-09T19:11:25,747   creating build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:25,748   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:25,750   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,019   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,021   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,045   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,093   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,097   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,101   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,111   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,132   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,135   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,137   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia
2023-09-09T19:11:26,166   running build_ext
2023-09-09T19:11:26,186   Traceback (most recent call last):
2023-09-09T19:11:26,187     File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 402, in get_provider
2023-09-09T19:11:26,187       module = sys.modules[moduleOrReq]
2023-09-09T19:11:26,188                ~~~~~~~~~~~^^^^^^^^^^^^^
2023-09-09T19:11:26,188   KeyError: 'numpy'

2023-09-09T19:11:26,190   During handling of the above exception, another exception occurred:

2023-09-09T19:11:26,191   Traceback (most recent call last):
2023-09-09T19:11:26,191     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-09T19:11:26,192       from . import multiarray
2023-09-09T19:11:26,192     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-09T19:11:26,193       from . import overrides
2023-09-09T19:11:26,194     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-09T19:11:26,194       from numpy.core._multiarray_umath import (
2023-09-09T19:11:26,195   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-09T19:11:26,196   During handling of the above exception, another exception occurred:

2023-09-09T19:11:26,197   Traceback (most recent call last):
2023-09-09T19:11:26,197     File "<string>", line 2, in <module>
2023-09-09T19:11:26,198     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-09T19:11:26,199     File "/tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py", line 42, in <module>
2023-09-09T19:11:26,199       setup(
2023-09-09T19:11:26,200     File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup
2023-09-09T19:11:26,200       return distutils.core.setup(**attrs)
2023-09-09T19:11:26,201              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T19:11:26,201     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup
2023-09-09T19:11:26,202       return run_commands(dist)
2023-09-09T19:11:26,203              ^^^^^^^^^^^^^^^^^^
2023-09-09T19:11:26,203     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-09-09T19:11:26,204       dist.run_commands()
2023-09-09T19:11:26,204     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-09-09T19:11:26,205       self.run_command(cmd)
2023-09-09T19:11:26,205     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-09T19:11:26,206       super().run_command(command)
2023-09-09T19:11:26,207     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-09T19:11:26,207       cmd_obj.run()
2023-09-09T19:11:26,208     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 325, in run
2023-09-09T19:11:26,209       self.run_command("build")
2023-09-09T19:11:26,210     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-09T19:11:26,210       self.distribution.run_command(command)
2023-09-09T19:11:26,211     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-09T19:11:26,212       super().run_command(command)
2023-09-09T19:11:26,212     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-09T19:11:26,213       cmd_obj.run()
2023-09-09T19:11:26,214     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run
2023-09-09T19:11:26,215       self.run_command(cmd_name)
2023-09-09T19:11:26,215     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-09T19:11:26,216       self.distribution.run_command(command)
2023-09-09T19:11:26,217     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-09T19:11:26,218       super().run_command(command)
2023-09-09T19:11:26,219     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-09T19:11:26,220       cmd_obj.run()
2023-09-09T19:11:26,221     File "/usr/local/lib/python3.11/dist-packages/setuptools/command/build_ext.py", line 88, in run
2023-09-09T19:11:26,221       _build_ext.run(self)
2023-09-09T19:11:26,222     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
2023-09-09T19:11:26,223       self.build_extensions()
2023-09-09T19:11:26,224     File "/tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py", line 29, in build_extensions
2023-09-09T19:11:26,225       numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
2023-09-09T19:11:26,226                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T19:11:26,227     File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 1213, in resource_filename
2023-09-09T19:11:26,228       return get_provider(package_or_requirement).get_resource_filename(
2023-09-09T19:11:26,228              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T19:11:26,229     File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 404, in get_provider
2023-09-09T19:11:26,230       __import__(moduleOrReq)
2023-09-09T19:11:26,231     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-09T19:11:26,231       from . import core
2023-09-09T19:11:26,232     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-09T19:11:26,233       raise ImportError(msg)
2023-09-09T19:11:26,234   ImportError:

2023-09-09T19:11:26,236   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-09T19:11:26,238   Importing the numpy C-extensions failed. This error can happen for
2023-09-09T19:11:26,239   many reasons, often due to issues with your setup or how NumPy was
2023-09-09T19:11:26,240   installed.

2023-09-09T19:11:26,241   We have compiled some common reasons and troubleshooting tips at:

2023-09-09T19:11:26,242       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-09T19:11:26,244   Please note and check the following:

2023-09-09T19:11:26,245     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-09T19:11:26,246     * The NumPy version is: "1.25.2"

2023-09-09T19:11:26,247   and make sure that they are the versions you expect.
2023-09-09T19:11:26,248   Please carefully study the documentation linked above for further help.

2023-09-09T19:11:26,250   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-09T19:11:26,323   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-09T19:11:26,339   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-09T19:11:26,339   exec(compile('"'"''"'"''"'"'
2023-09-09T19:11:26,339   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-09T19:11:26,339   #
2023-09-09T19:11:26,339   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-09T19:11:26,339   #   import from `distutils.core` to work with newer packaging standards.
2023-09-09T19:11:26,339   # - It provides a clear error message when setuptools is not installed.
2023-09-09T19:11:26,339   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-09T19:11:26,339   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-09T19:11:26,339   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-09T19:11:26,339   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-09T19:11:26,339   import os, sys, tokenize
2023-09-09T19:11:26,339   
2023-09-09T19:11:26,339   try:
2023-09-09T19:11:26,339       import setuptools
2023-09-09T19:11:26,339   except ImportError as error:
2023-09-09T19:11:26,339       print(
2023-09-09T19:11:26,339           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-09T19:11:26,339           "the build environment.",
2023-09-09T19:11:26,339           file=sys.stderr,
2023-09-09T19:11:26,339       )
2023-09-09T19:11:26,339       sys.exit(1)
2023-09-09T19:11:26,339   
2023-09-09T19:11:26,339   __file__ = %r
2023-09-09T19:11:26,339   sys.argv[0] = __file__
2023-09-09T19:11:26,339   
2023-09-09T19:11:26,339   if os.path.exists(__file__):
2023-09-09T19:11:26,339       filename = __file__
2023-09-09T19:11:26,339       with tokenize.open(__file__) as f:
2023-09-09T19:11:26,339           setup_py_code = f.read()
2023-09-09T19:11:26,339   else:
2023-09-09T19:11:26,339       filename = "<auto-generated setuptools caller>"
2023-09-09T19:11:26,339       setup_py_code = "from setuptools import setup; setup()"
2023-09-09T19:11:26,339   
2023-09-09T19:11:26,339   exec(compile(setup_py_code, filename, "exec"))
2023-09-09T19:11:26,339   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-blibfjoa[/]
2023-09-09T19:11:26,339   [bold magenta]cwd[/]: /tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/
2023-09-09T19:11:26,340   Building wheel for mitre (setup.py): finished with status 'error'
2023-09-09T19:11:26,341   ERROR: Failed building wheel for mitre
2023-09-09T19:11:26,342   Running setup.py clean for mitre
2023-09-09T19:11:26,344   Running command python setup.py clean
2023-09-09T19:11:26,969   /tmp/pip-wheel-3dkpmyt7/mitre_06cee1405e96473983c66f5b751d86f2/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
2023-09-09T19:11:26,969     import pkg_resources
2023-09-09T19:11:27,316   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta1' to '0.9b1'
2023-09-09T19:11:27,317     self.metadata.version = self._normalize_version(
2023-09-09T19:11:27,353   running clean
2023-09-09T19:11:27,399   removing 'build/lib.linux-armv7l-cpython-311' (and everything under it)
2023-09-09T19:11:27,456   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-09T19:11:27,456   'build/scripts-3.11' does not exist -- can't clean it
2023-09-09T19:11:27,457   removing 'build'
2023-09-09T19:11:27,564 Failed to build mitre
2023-09-09T19:11:27,565 ERROR: Failed to build one or more wheels
2023-09-09T19:11:27,566 Exception information:
2023-09-09T19:11:27,566 Traceback (most recent call last):
2023-09-09T19:11:27,566   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-09T19:11:27,566     status = run_func(*args)
2023-09-09T19:11:27,566              ^^^^^^^^^^^^^^^
2023-09-09T19:11:27,566   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-09T19:11:27,566     return func(self, options, args)
2023-09-09T19:11:27,566            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T19:11:27,566   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-09T19:11:27,566     raise CommandError("Failed to build one or more wheels")
2023-09-09T19:11:27,566 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-09T19:11:27,569 Removed build tracker: '/tmp/pip-build-tracker-kur_fam8'