2023-09-09T19:11:17,433 Created temporary directory: /tmp/pip-build-tracker-rgruzfrd 2023-09-09T19:11:17,434 Initialized build tracking at /tmp/pip-build-tracker-rgruzfrd 2023-09-09T19:11:17,435 Created build tracker: /tmp/pip-build-tracker-rgruzfrd 2023-09-09T19:11:17,435 Entered build tracker: /tmp/pip-build-tracker-rgruzfrd 2023-09-09T19:11:17,436 Created temporary directory: /tmp/pip-wheel-9rbovxt0 2023-09-09T19:11:17,439 Created temporary directory: /tmp/pip-ephem-wheel-cache-qau8ie6s 2023-09-09T19:11:17,460 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-09T19:11:17,464 2 location(s) to search for versions of mitre: 2023-09-09T19:11:17,464 * https://pypi.org/simple/mitre/ 2023-09-09T19:11:17,464 * https://www.piwheels.org/simple/mitre/ 2023-09-09T19:11:17,464 Fetching project page and analyzing links: https://pypi.org/simple/mitre/ 2023-09-09T19:11:17,465 Getting page https://pypi.org/simple/mitre/ 2023-09-09T19:11:17,467 Found index url https://pypi.org/simple/ 2023-09-09T19:11:17,605 Fetched page https://pypi.org/simple/mitre/ as application/vnd.pypi.simple.v1+json 2023-09-09T19:11:17,608 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,609 Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b1 2023-09-09T19:11:17,609 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,610 Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b2 2023-09-09T19:11:17,610 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,611 Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b3 2023-09-09T19:11:17,612 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,612 Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b4 2023-09-09T19:11:17,613 Skipping link: No binaries permitted for mitre: https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,613 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/mitre/) 2023-09-09T19:11:17,614 Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz (from https://pypi.org/simple/mitre/), version: 0.9b5 2023-09-09T19:11:17,615 Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz (from https://pypi.org/simple/mitre/), version: 1.0b1 2023-09-09T19:11:17,615 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitre/ 2023-09-09T19:11:17,616 Getting page https://www.piwheels.org/simple/mitre/ 2023-09-09T19:11:17,618 Found index url https://www.piwheels.org/simple/ 2023-09-09T19:11:17,897 Fetched page https://www.piwheels.org/simple/mitre/ as text/html 2023-09-09T19:11:17,909 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv6l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,910 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp34-cp34m-linux_armv7l.whl#sha256=bfb358058f7b74bd7382e4f832f5627cc4256b4268ee568e8622df1da356a87a (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,910 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv6l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,911 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp35-cp35m-linux_armv7l.whl#sha256=6190c26108d42de0a3b22358abc67762aee61d4162b7911a8ff99aecec5759fd (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,911 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp37-cp37m-linux_armv6l.whl#sha256=c3282d147e0962e11d98d3b8742fe05a92e0060d36b7bda86435fdfc109d6ff3 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,912 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp37-cp37m-linux_armv7l.whl#sha256=c3282d147e0962e11d98d3b8742fe05a92e0060d36b7bda86435fdfc109d6ff3 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,912 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv6l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,913 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b1-cp39-cp39-linux_armv7l.whl#sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,913 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv6l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,914 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp34-cp34m-linux_armv7l.whl#sha256=95d4041b86655691dc4db5d9290ef62d4d6b27d3d95e60c9f7bf90082088b414 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,915 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv6l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,915 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp35-cp35m-linux_armv7l.whl#sha256=ca1f465a44a41a9c3adc4c326ed2492fc05a6114761e8f0f188f20d341c0328d (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,916 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv6l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,916 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp37-cp37m-linux_armv7l.whl#sha256=a6bc34245279b59a64469012f7421d80492c6c9fa23e52a4eb406af0a0673746 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,917 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp39-cp39-linux_armv6l.whl#sha256=e357a5e5bb99e15de1e48b038d1e7e529157a982855c13bb9104554f3a6a4b96 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,918 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b2-cp39-cp39-linux_armv7l.whl#sha256=e357a5e5bb99e15de1e48b038d1e7e529157a982855c13bb9104554f3a6a4b96 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,918 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv6l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,919 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp34-cp34m-linux_armv7l.whl#sha256=be764640c5eed610e6be535ccea2bffdcb926318c1302572464f5f0ab967f353 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,919 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv6l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,920 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp35-cp35m-linux_armv7l.whl#sha256=100934cf7a6511ebd3e27d8ea87fe89e2129503bad7b6c12aba9a7f7d3f9eaeb (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,920 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv6l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,921 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp37-cp37m-linux_armv7l.whl#sha256=bd6fef5b4dea820b078f13e7a3bc52d6e4dfbe0c7a25934ed117731f4e9fa58b (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,921 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv6l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,922 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b3-cp39-cp39-linux_armv7l.whl#sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,922 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv6l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,923 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp34-cp34m-linux_armv7l.whl#sha256=27cc16875eaa745fc0ef078c85733c1628990f39da85101b7be72ddce6538e9f (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,924 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv6l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,924 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp35-cp35m-linux_armv7l.whl#sha256=f969ddf593dcaac4fab422cec1baf928a2817eb7df21811097553472d297b73d (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,925 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv6l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,925 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b4-cp37-cp37m-linux_armv7l.whl#sha256=31e7d6f46b91ea02695731c7df337d442dd72c09d3d077b804c6b2735bfdd5c5 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,926 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv6l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,927 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp34-cp34m-linux_armv7l.whl#sha256=722fa89ee5a6344b04655c7d3cada6ef54138428013820b076c0990e24219ece (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,927 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv6l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,928 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp35-cp35m-linux_armv7l.whl#sha256=d9f570a12e8ae2539d8dc328d694402f010e55b8a16b0bd1bba9d19744eec839 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,928 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv6l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,928 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp37-cp37m-linux_armv7l.whl#sha256=4b36f8eb7f6daebd469d1fd74fac3f5e25a4c1295281233fab0c9168c9dc6559 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,929 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv6l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,929 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-0.9b5-cp39-cp39-linux_armv7l.whl#sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,930 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv6l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,931 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp34-cp34m-linux_armv7l.whl#sha256=c3d1f7e0803ce02b413e067d684c8351fd348869d6fc9c7a39541eefcb7f16ec (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,931 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv6l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,932 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp35-cp35m-linux_armv7l.whl#sha256=10f4e2b732c240f1489d0cce35b9f2fa5aeb32cb4a8d2bc8205f649209c8c829 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,933 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv6l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,933 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp37-cp37m-linux_armv7l.whl#sha256=f6b9b58771d1e721b86177b02ccf669cf154473b8d53595638a6880543c24933 (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,934 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv6l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,934 Skipping link: No binaries permitted for mitre: https://www.piwheels.org/simple/mitre/mitre-1.0b1-cp39-cp39-linux_armv7l.whl#sha256=1a37af90ea65672c4e28cb660625a1a65d99864bc753ffcd68a9575a5bbfde4e (from https://www.piwheels.org/simple/mitre/) 2023-09-09T19:11:17,935 Skipping link: not a file: https://www.piwheels.org/simple/mitre/ 2023-09-09T19:11:17,936 Skipping link: not a file: https://pypi.org/simple/mitre/ 2023-09-09T19:11:17,955 Given no hashes to check 1 links for project 'mitre': discarding no candidates 2023-09-09T19:11:17,972 Collecting mitre==0.9b2 2023-09-09T19:11:17,975 Created temporary directory: /tmp/pip-unpack-yis9uf4w 2023-09-09T19:11:18,192 Downloading mitre-0.9b2.tar.gz (9.5 MB) 2023-09-09T19:11:23,595 Added mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz to build tracker '/tmp/pip-build-tracker-rgruzfrd' 2023-09-09T19:11:23,597 Running setup.py (path:/tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py) egg_info for package mitre 2023-09-09T19:11:23,598 Created temporary directory: /tmp/pip-pip-egg-info-jd3iuz19 2023-09-09T19:11:23,599 Preparing metadata (setup.py): started 2023-09-09T19:11:23,601 Running command python setup.py egg_info 2023-09-09T19:11:24,965 /tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-09T19:11:24,965 import pkg_resources 2023-09-09T19:11:25,158 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-09T19:11:25,159 !! 2023-09-09T19:11:25,160 ******************************************************************************** 2023-09-09T19:11:25,160 Usage of dash-separated 'description-file' will not be supported in future 2023-09-09T19:11:25,161 versions. Please use the underscore name 'description_file' instead. 2023-09-09T19:11:25,162 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-09T19:11:25,163 or your builds will no longer be supported. 2023-09-09T19:11:25,164 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-09T19:11:25,165 ******************************************************************************** 2023-09-09T19:11:25,166 !! 2023-09-09T19:11:25,167 opt = self.warn_dash_deprecation(opt, section) 2023-09-09T19:11:25,313 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta2' to '0.9b2' 2023-09-09T19:11:25,313 self.metadata.version = self._normalize_version( 2023-09-09T19:11:25,358 running egg_info 2023-09-09T19:11:25,359 creating /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info 2023-09-09T19:11:25,383 writing /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/PKG-INFO 2023-09-09T19:11:25,387 writing dependency_links to /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/dependency_links.txt 2023-09-09T19:11:25,388 writing entry points to /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/entry_points.txt 2023-09-09T19:11:25,390 writing requirements to /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/requires.txt 2023-09-09T19:11:25,391 writing top-level names to /tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/top_level.txt 2023-09-09T19:11:25,393 writing manifest file '/tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/SOURCES.txt' 2023-09-09T19:11:25,473 reading manifest file '/tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/SOURCES.txt' 2023-09-09T19:11:25,474 reading manifest template 'MANIFEST.in' 2023-09-09T19:11:25,495 adding license file 'LICENSE.txt' 2023-09-09T19:11:25,499 writing manifest file '/tmp/pip-pip-egg-info-jd3iuz19/mitre.egg-info/SOURCES.txt' 2023-09-09T19:11:25,610 Preparing metadata (setup.py): finished with status 'done' 2023-09-09T19:11:25,615 Source in /tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3 has version 0.9b2, which satisfies requirement mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz 2023-09-09T19:11:25,616 Removed mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz from build tracker '/tmp/pip-build-tracker-rgruzfrd' 2023-09-09T19:11:25,621 Created temporary directory: /tmp/pip-unpack-fnap2uyy 2023-09-09T19:11:25,622 Created temporary directory: /tmp/pip-unpack-o9un7dcc 2023-09-09T19:11:25,633 Building wheels for collected packages: mitre 2023-09-09T19:11:25,637 Created temporary directory: /tmp/pip-wheel-op0b88pk 2023-09-09T19:11:25,637 Building wheel for mitre (setup.py): started 2023-09-09T19:11:25,638 Destination directory: /tmp/pip-wheel-op0b88pk 2023-09-09T19:11:25,639 Running command python setup.py bdist_wheel 2023-09-09T19:11:26,248 /tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-09T19:11:26,248 import pkg_resources 2023-09-09T19:11:26,444 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-09T19:11:26,444 !! 2023-09-09T19:11:26,445 ******************************************************************************** 2023-09-09T19:11:26,446 Usage of dash-separated 'description-file' will not be supported in future 2023-09-09T19:11:26,446 versions. Please use the underscore name 'description_file' instead. 2023-09-09T19:11:26,447 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-09T19:11:26,448 or your builds will no longer be supported. 2023-09-09T19:11:26,449 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-09T19:11:26,449 ******************************************************************************** 2023-09-09T19:11:26,450 !! 2023-09-09T19:11:26,451 opt = self.warn_dash_deprecation(opt, section) 2023-09-09T19:11:26,598 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta2' to '0.9b2' 2023-09-09T19:11:26,599 self.metadata.version = self._normalize_version( 2023-09-09T19:11:26,636 running bdist_wheel 2023-09-09T19:11:26,710 running build 2023-09-09T19:11:26,711 running build_py 2023-09-09T19:11:26,738 creating build 2023-09-09T19:11:26,739 creating build/lib.linux-armv7l-cpython-311 2023-09-09T19:11:26,739 creating build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,741 copying mitre/key_comparison.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,743 copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,745 copying mitre/main.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,748 copying mitre/command_line.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,750 copying mitre/test.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,751 copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,753 copying mitre/posterior.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,757 copying mitre/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,758 copying mitre/visualization.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,761 copying mitre/rules.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,764 copying mitre/logit_rules.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,767 copying mitre/logit_test.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,768 copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,770 copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:26,772 creating build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,773 copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,775 copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,777 copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,779 copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,780 copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,782 copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,784 copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-cpython-311/mitre/data_processing 2023-09-09T19:11:26,786 creating build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,787 copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,789 copying mitre/load_data/basic.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,791 copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,793 copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,795 copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-cpython-311/mitre/load_data 2023-09-09T19:11:26,798 creating build/lib.linux-armv7l-cpython-311/mitre/trees 2023-09-09T19:11:26,799 copying mitre/trees/priors.py -> build/lib.linux-armv7l-cpython-311/mitre/trees 2023-09-09T19:11:26,801 copying mitre/trees/simulators.py -> build/lib.linux-armv7l-cpython-311/mitre/trees 2023-09-09T19:11:26,803 copying mitre/trees/utilities.py -> build/lib.linux-armv7l-cpython-311/mitre/trees 2023-09-09T19:11:26,805 copying mitre/trees/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/trees 2023-09-09T19:11:26,807 creating build/lib.linux-armv7l-cpython-311/mitre/comparison_methods 2023-09-09T19:11:26,808 copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/mitre/comparison_methods 2023-09-09T19:11:26,810 copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-cpython-311/mitre/comparison_methods 2023-09-09T19:11:26,813 running egg_info 2023-09-09T19:11:26,869 writing mitre.egg-info/PKG-INFO 2023-09-09T19:11:26,873 writing dependency_links to mitre.egg-info/dependency_links.txt 2023-09-09T19:11:26,875 writing entry points to mitre.egg-info/entry_points.txt 2023-09-09T19:11:26,877 writing requirements to mitre.egg-info/requires.txt 2023-09-09T19:11:26,878 writing top-level names to mitre.egg-info/top_level.txt 2023-09-09T19:11:26,907 reading manifest file 'mitre.egg-info/SOURCES.txt' 2023-09-09T19:11:26,911 reading manifest template 'MANIFEST.in' 2023-09-09T19:11:26,930 adding license file 'LICENSE.txt' 2023-09-09T19:11:26,935 writing manifest file 'mitre.egg-info/SOURCES.txt' 2023-09-09T19:11:26,938 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data' is absent from the `packages` configuration. 2023-09-09T19:11:26,939 !! 2023-09-09T19:11:26,940 ******************************************************************************** 2023-09-09T19:11:26,941 ############################ 2023-09-09T19:11:26,941 # Package would be ignored # 2023-09-09T19:11:26,942 ############################ 2023-09-09T19:11:26,942 Python recognizes 'mitre.example_data' as an importable package[^1], 2023-09-09T19:11:26,943 but it is absent from setuptools' `packages` configuration. 2023-09-09T19:11:26,944 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T19:11:26,944 package, please make sure that 'mitre.example_data' is explicitly added 2023-09-09T19:11:26,945 to the `packages` configuration field. 2023-09-09T19:11:26,945 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T19:11:26,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T19:11:26,946 instead of `find_packages(...)`/`find:`). 2023-09-09T19:11:26,947 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T19:11:26,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T19:11:26,949 If you don't want 'mitre.example_data' to be distributed and are 2023-09-09T19:11:26,949 already explicitly excluding 'mitre.example_data' via 2023-09-09T19:11:26,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T19:11:26,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T19:11:26,951 combination with a more fine grained `package-data` configuration. 2023-09-09T19:11:26,951 You can read more about "package data files" on setuptools documentation page: 2023-09-09T19:11:26,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T19:11:26,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T19:11:26,954 even if it does not contain any `.py` files. 2023-09-09T19:11:26,955 On the other hand, currently there is no concept of package data 2023-09-09T19:11:26,956 directory, all directories are treated like packages. 2023-09-09T19:11:26,956 ******************************************************************************** 2023-09-09T19:11:26,960 !! 2023-09-09T19:11:26,961 check.warn(importable) 2023-09-09T19:11:26,962 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.bokulich' is absent from the `packages` configuration. 2023-09-09T19:11:26,962 !! 2023-09-09T19:11:26,963 ******************************************************************************** 2023-09-09T19:11:26,964 ############################ 2023-09-09T19:11:26,965 # Package would be ignored # 2023-09-09T19:11:26,965 ############################ 2023-09-09T19:11:26,966 Python recognizes 'mitre.example_data.bokulich' as an importable package[^1], 2023-09-09T19:11:26,966 but it is absent from setuptools' `packages` configuration. 2023-09-09T19:11:26,967 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T19:11:26,967 package, please make sure that 'mitre.example_data.bokulich' is explicitly added 2023-09-09T19:11:26,968 to the `packages` configuration field. 2023-09-09T19:11:26,969 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T19:11:26,970 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T19:11:26,971 instead of `find_packages(...)`/`find:`). 2023-09-09T19:11:26,971 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T19:11:26,972 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T19:11:26,974 If you don't want 'mitre.example_data.bokulich' to be distributed and are 2023-09-09T19:11:26,974 already explicitly excluding 'mitre.example_data.bokulich' via 2023-09-09T19:11:26,975 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T19:11:26,975 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T19:11:26,977 combination with a more fine grained `package-data` configuration. 2023-09-09T19:11:26,978 You can read more about "package data files" on setuptools documentation page: 2023-09-09T19:11:26,979 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T19:11:26,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T19:11:26,982 even if it does not contain any `.py` files. 2023-09-09T19:11:26,983 On the other hand, currently there is no concept of package data 2023-09-09T19:11:26,984 directory, all directories are treated like packages. 2023-09-09T19:11:26,984 ******************************************************************************** 2023-09-09T19:11:26,986 !! 2023-09-09T19:11:26,987 check.warn(importable) 2023-09-09T19:11:26,988 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.david' is absent from the `packages` configuration. 2023-09-09T19:11:26,988 !! 2023-09-09T19:11:26,990 ******************************************************************************** 2023-09-09T19:11:26,990 ############################ 2023-09-09T19:11:26,991 # Package would be ignored # 2023-09-09T19:11:26,991 ############################ 2023-09-09T19:11:26,992 Python recognizes 'mitre.example_data.david' as an importable package[^1], 2023-09-09T19:11:26,992 but it is absent from setuptools' `packages` configuration. 2023-09-09T19:11:26,993 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T19:11:26,994 package, please make sure that 'mitre.example_data.david' is explicitly added 2023-09-09T19:11:26,994 to the `packages` configuration field. 2023-09-09T19:11:26,995 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T19:11:26,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T19:11:26,996 instead of `find_packages(...)`/`find:`). 2023-09-09T19:11:26,998 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T19:11:26,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T19:11:27,000 If you don't want 'mitre.example_data.david' to be distributed and are 2023-09-09T19:11:27,001 already explicitly excluding 'mitre.example_data.david' via 2023-09-09T19:11:27,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T19:11:27,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T19:11:27,003 combination with a more fine grained `package-data` configuration. 2023-09-09T19:11:27,004 You can read more about "package data files" on setuptools documentation page: 2023-09-09T19:11:27,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T19:11:27,006 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T19:11:27,007 even if it does not contain any `.py` files. 2023-09-09T19:11:27,008 On the other hand, currently there is no concept of package data 2023-09-09T19:11:27,008 directory, all directories are treated like packages. 2023-09-09T19:11:27,009 ******************************************************************************** 2023-09-09T19:11:27,010 !! 2023-09-09T19:11:27,010 check.warn(importable) 2023-09-09T19:11:27,011 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.digiulio' is absent from the `packages` configuration. 2023-09-09T19:11:27,011 !! 2023-09-09T19:11:27,013 ******************************************************************************** 2023-09-09T19:11:27,013 ############################ 2023-09-09T19:11:27,013 # Package would be ignored # 2023-09-09T19:11:27,014 ############################ 2023-09-09T19:11:27,014 Python recognizes 'mitre.example_data.digiulio' as an importable package[^1], 2023-09-09T19:11:27,015 but it is absent from setuptools' `packages` configuration. 2023-09-09T19:11:27,015 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T19:11:27,016 package, please make sure that 'mitre.example_data.digiulio' is explicitly added 2023-09-09T19:11:27,016 to the `packages` configuration field. 2023-09-09T19:11:27,017 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T19:11:27,018 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T19:11:27,018 instead of `find_packages(...)`/`find:`). 2023-09-09T19:11:27,019 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T19:11:27,020 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T19:11:27,021 If you don't want 'mitre.example_data.digiulio' to be distributed and are 2023-09-09T19:11:27,021 already explicitly excluding 'mitre.example_data.digiulio' via 2023-09-09T19:11:27,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T19:11:27,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T19:11:27,023 combination with a more fine grained `package-data` configuration. 2023-09-09T19:11:27,024 You can read more about "package data files" on setuptools documentation page: 2023-09-09T19:11:27,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T19:11:27,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T19:11:27,026 even if it does not contain any `.py` files. 2023-09-09T19:11:27,027 On the other hand, currently there is no concept of package data 2023-09-09T19:11:27,027 directory, all directories are treated like packages. 2023-09-09T19:11:27,028 ******************************************************************************** 2023-09-09T19:11:27,029 !! 2023-09-09T19:11:27,030 check.warn(importable) 2023-09-09T19:11:27,030 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'mitre.example_data.karelia' is absent from the `packages` configuration. 2023-09-09T19:11:27,031 !! 2023-09-09T19:11:27,032 ******************************************************************************** 2023-09-09T19:11:27,032 ############################ 2023-09-09T19:11:27,033 # Package would be ignored # 2023-09-09T19:11:27,033 ############################ 2023-09-09T19:11:27,034 Python recognizes 'mitre.example_data.karelia' as an importable package[^1], 2023-09-09T19:11:27,034 but it is absent from setuptools' `packages` configuration. 2023-09-09T19:11:27,036 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-09T19:11:27,036 package, please make sure that 'mitre.example_data.karelia' is explicitly added 2023-09-09T19:11:27,037 to the `packages` configuration field. 2023-09-09T19:11:27,038 Alternatively, you can also rely on setuptools' discovery methods 2023-09-09T19:11:27,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-09T19:11:27,039 instead of `find_packages(...)`/`find:`). 2023-09-09T19:11:27,040 You can read more about "package discovery" on setuptools documentation page: 2023-09-09T19:11:27,041 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-09T19:11:27,054 If you don't want 'mitre.example_data.karelia' to be distributed and are 2023-09-09T19:11:27,075 already explicitly excluding 'mitre.example_data.karelia' via 2023-09-09T19:11:27,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-09T19:11:27,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-09T19:11:27,160 combination with a more fine grained `package-data` configuration. 2023-09-09T19:11:27,161 You can read more about "package data files" on setuptools documentation page: 2023-09-09T19:11:27,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-09T19:11:27,163 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-09T19:11:27,163 even if it does not contain any `.py` files. 2023-09-09T19:11:27,164 On the other hand, currently there is no concept of package data 2023-09-09T19:11:27,164 directory, all directories are treated like packages. 2023-09-09T19:11:27,165 ******************************************************************************** 2023-09-09T19:11:27,166 !! 2023-09-09T19:11:27,166 check.warn(importable) 2023-09-09T19:11:27,166 copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:27,167 copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:27,167 copying mitre/quick_test.cfg -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:27,168 copying mitre/template.html -> build/lib.linux-armv7l-cpython-311/mitre 2023-09-09T19:11:27,168 creating build/lib.linux-armv7l-cpython-311/mitre/example_data 2023-09-09T19:11:27,169 copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-cpython-311/mitre/example_data 2023-09-09T19:11:27,169 copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-cpython-311/mitre/example_data 2023-09-09T19:11:27,170 creating build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,170 copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,171 copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,171 copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,186 copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,236 copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,239 copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,242 copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,249 copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,264 copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,266 copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/bokulich 2023-09-09T19:11:27,291 creating build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,292 copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,423 copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,425 copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,453 copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,690 copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,693 copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,701 copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,768 copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,772 copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/david 2023-09-09T19:11:27,799 creating build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,800 copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,895 copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,917 copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,959 copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,964 copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,975 copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:27,997 copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:28,003 copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:28,032 copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-cpython-311/mitre/example_data/digiulio 2023-09-09T19:11:28,034 creating build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,035 copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,037 copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,426 copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,428 copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,460 copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,524 copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,528 copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,531 copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,543 copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,791 copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,796 copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,801 copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-cpython-311/mitre/example_data/karelia 2023-09-09T19:11:28,888 running build_ext 2023-09-09T19:11:28,920 Traceback (most recent call last): 2023-09-09T19:11:28,921 File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 402, in get_provider 2023-09-09T19:11:28,922 module = sys.modules[moduleOrReq] 2023-09-09T19:11:28,923 ~~~~~~~~~~~^^^^^^^^^^^^^ 2023-09-09T19:11:28,924 KeyError: 'numpy' 2023-09-09T19:11:28,973 During handling of the above exception, another exception occurred: 2023-09-09T19:11:29,021 Traceback (most recent call last): 2023-09-09T19:11:29,021 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-09T19:11:29,022 from . import multiarray 2023-09-09T19:11:29,023 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-09T19:11:29,023 from . import overrides 2023-09-09T19:11:29,024 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-09T19:11:29,024 from numpy.core._multiarray_umath import ( 2023-09-09T19:11:29,025 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-09T19:11:29,026 During handling of the above exception, another exception occurred: 2023-09-09T19:11:29,027 Traceback (most recent call last): 2023-09-09T19:11:29,028 File "", line 2, in 2023-09-09T19:11:29,029 File "", line 34, in 2023-09-09T19:11:29,030 File "/tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py", line 42, in 2023-09-09T19:11:29,031 setup( 2023-09-09T19:11:29,032 File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-09T19:11:29,033 return distutils.core.setup(**attrs) 2023-09-09T19:11:29,034 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-09T19:11:29,036 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-09T19:11:29,037 return run_commands(dist) 2023-09-09T19:11:29,038 ^^^^^^^^^^^^^^^^^^ 2023-09-09T19:11:29,039 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-09T19:11:29,040 dist.run_commands() 2023-09-09T19:11:29,041 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-09T19:11:29,043 self.run_command(cmd) 2023-09-09T19:11:29,080 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-09T19:11:29,081 super().run_command(command) 2023-09-09T19:11:29,082 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-09T19:11:29,083 cmd_obj.run() 2023-09-09T19:11:29,084 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 325, in run 2023-09-09T19:11:29,084 self.run_command("build") 2023-09-09T19:11:29,085 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-09T19:11:29,086 self.distribution.run_command(command) 2023-09-09T19:11:29,087 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-09T19:11:29,088 super().run_command(command) 2023-09-09T19:11:29,088 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-09T19:11:29,089 cmd_obj.run() 2023-09-09T19:11:29,090 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run 2023-09-09T19:11:29,091 self.run_command(cmd_name) 2023-09-09T19:11:29,092 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-09T19:11:29,094 self.distribution.run_command(command) 2023-09-09T19:11:29,131 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-09T19:11:29,132 super().run_command(command) 2023-09-09T19:11:29,133 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-09T19:11:29,134 cmd_obj.run() 2023-09-09T19:11:29,135 File "/usr/local/lib/python3.11/dist-packages/setuptools/command/build_ext.py", line 88, in run 2023-09-09T19:11:29,136 _build_ext.run(self) 2023-09-09T19:11:29,137 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build_ext.py", line 345, in run 2023-09-09T19:11:29,138 self.build_extensions() 2023-09-09T19:11:29,139 File "/tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py", line 29, in build_extensions 2023-09-09T19:11:29,140 numpy_incl = pkg_resources.resource_filename('numpy', 'core/include') 2023-09-09T19:11:29,141 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-09T19:11:29,142 File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 1213, in resource_filename 2023-09-09T19:11:29,142 return get_provider(package_or_requirement).get_resource_filename( 2023-09-09T19:11:29,143 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-09T19:11:29,144 File "/usr/local/lib/python3.11/dist-packages/pkg_resources/__init__.py", line 404, in get_provider 2023-09-09T19:11:29,145 __import__(moduleOrReq) 2023-09-09T19:11:29,145 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-09T19:11:29,147 from . import core 2023-09-09T19:11:29,148 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-09T19:11:29,149 raise ImportError(msg) 2023-09-09T19:11:29,150 ImportError: 2023-09-09T19:11:29,151 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-09T19:11:29,153 Importing the numpy C-extensions failed. This error can happen for 2023-09-09T19:11:29,154 many reasons, often due to issues with your setup or how NumPy was 2023-09-09T19:11:29,155 installed. 2023-09-09T19:11:29,158 We have compiled some common reasons and troubleshooting tips at: 2023-09-09T19:11:29,191 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-09T19:11:29,192 Please note and check the following: 2023-09-09T19:11:29,194 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-09T19:11:29,194 * The NumPy version is: "1.25.2" 2023-09-09T19:11:29,196 and make sure that they are the versions you expect. 2023-09-09T19:11:29,196 Please carefully study the documentation linked above for further help. 2023-09-09T19:11:29,198 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-09T19:11:29,200 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-09T19:11:29,225 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-09T19:11:29,225 exec(compile('"'"''"'"''"'"' 2023-09-09T19:11:29,225 # This is -- a caller that pip uses to run setup.py 2023-09-09T19:11:29,225 # 2023-09-09T19:11:29,225 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-09T19:11:29,225 # import from `distutils.core` to work with newer packaging standards. 2023-09-09T19:11:29,225 # - It provides a clear error message when setuptools is not installed. 2023-09-09T19:11:29,225 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-09T19:11:29,225 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-09T19:11:29,225 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-09T19:11:29,225 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-09T19:11:29,225 import os, sys, tokenize 2023-09-09T19:11:29,225 2023-09-09T19:11:29,225 try: 2023-09-09T19:11:29,225 import setuptools 2023-09-09T19:11:29,225 except ImportError as error: 2023-09-09T19:11:29,225 print( 2023-09-09T19:11:29,225 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-09T19:11:29,225 "the build environment.", 2023-09-09T19:11:29,225 file=sys.stderr, 2023-09-09T19:11:29,225 ) 2023-09-09T19:11:29,225 sys.exit(1) 2023-09-09T19:11:29,225 2023-09-09T19:11:29,225 __file__ = %r 2023-09-09T19:11:29,225 sys.argv[0] = __file__ 2023-09-09T19:11:29,225 2023-09-09T19:11:29,225 if os.path.exists(__file__): 2023-09-09T19:11:29,225 filename = __file__ 2023-09-09T19:11:29,225 with tokenize.open(__file__) as f: 2023-09-09T19:11:29,225 setup_py_code = f.read() 2023-09-09T19:11:29,225 else: 2023-09-09T19:11:29,225 filename = "" 2023-09-09T19:11:29,225 setup_py_code = "from setuptools import setup; setup()" 2023-09-09T19:11:29,225 2023-09-09T19:11:29,225 exec(compile(setup_py_code, filename, "exec")) 2023-09-09T19:11:29,225 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-op0b88pk[/] 2023-09-09T19:11:29,225 [bold magenta]cwd[/]: /tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/ 2023-09-09T19:11:29,227 Building wheel for mitre (setup.py): finished with status 'error' 2023-09-09T19:11:29,228 ERROR: Failed building wheel for mitre 2023-09-09T19:11:29,229 Running setup.py clean for mitre 2023-09-09T19:11:29,230 Running command python setup.py clean 2023-09-09T19:11:29,857 /tmp/pip-wheel-9rbovxt0/mitre_30dcf0a6e6bb47f6a88bf84b3b8b0ec3/setup.py:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-09T19:11:29,857 import pkg_resources 2023-09-09T19:11:30,100 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-09T19:11:30,100 !! 2023-09-09T19:11:30,101 ******************************************************************************** 2023-09-09T19:11:30,102 Usage of dash-separated 'description-file' will not be supported in future 2023-09-09T19:11:30,102 versions. Please use the underscore name 'description_file' instead. 2023-09-09T19:11:30,103 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-09T19:11:30,104 or your builds will no longer be supported. 2023-09-09T19:11:30,105 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-09T19:11:30,105 ******************************************************************************** 2023-09-09T19:11:30,107 !! 2023-09-09T19:11:30,107 opt = self.warn_dash_deprecation(opt, section) 2023-09-09T19:11:30,256 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:320: InformationOnly: Normalizing '0.9beta2' to '0.9b2' 2023-09-09T19:11:30,257 self.metadata.version = self._normalize_version( 2023-09-09T19:11:30,295 running clean 2023-09-09T19:11:30,342 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-09T19:11:30,402 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-09T19:11:30,403 'build/scripts-3.11' does not exist -- can't clean it 2023-09-09T19:11:30,404 removing 'build' 2023-09-09T19:11:30,513 Failed to build mitre 2023-09-09T19:11:30,514 ERROR: Failed to build one or more wheels 2023-09-09T19:11:30,516 Exception information: 2023-09-09T19:11:30,516 Traceback (most recent call last): 2023-09-09T19:11:30,516 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-09T19:11:30,516 status = run_func(*args) 2023-09-09T19:11:30,516 ^^^^^^^^^^^^^^^ 2023-09-09T19:11:30,516 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-09T19:11:30,516 return func(self, options, args) 2023-09-09T19:11:30,516 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-09T19:11:30,516 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-09T19:11:30,516 raise CommandError("Failed to build one or more wheels") 2023-09-09T19:11:30,516 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-09T19:11:30,519 Removed build tracker: '/tmp/pip-build-tracker-rgruzfrd'