2023-09-09T21:13:35,707 Created temporary directory: /tmp/pip-build-tracker-rx27nw77
2023-09-09T21:13:35,708 Initialized build tracking at /tmp/pip-build-tracker-rx27nw77
2023-09-09T21:13:35,708 Created build tracker: /tmp/pip-build-tracker-rx27nw77
2023-09-09T21:13:35,709 Entered build tracker: /tmp/pip-build-tracker-rx27nw77
2023-09-09T21:13:35,709 Created temporary directory: /tmp/pip-wheel-mtxn8gz8
2023-09-09T21:13:35,712 Created temporary directory: /tmp/pip-ephem-wheel-cache-ec5osd49
2023-09-09T21:13:35,734 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-09T21:13:35,738 2 location(s) to search for versions of seqlib:
2023-09-09T21:13:35,738 * https://pypi.org/simple/seqlib/
2023-09-09T21:13:35,738 * https://www.piwheels.org/simple/seqlib/
2023-09-09T21:13:35,739 Fetching project page and analyzing links: https://pypi.org/simple/seqlib/
2023-09-09T21:13:35,740 Getting page https://pypi.org/simple/seqlib/
2023-09-09T21:13:35,741 Found index url https://pypi.org/simple/
2023-09-09T21:13:36,192 Fetched page https://pypi.org/simple/seqlib/ as application/vnd.pypi.simple.v1+json
2023-09-09T21:13:36,196   Found link https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.2
2023-09-09T21:13:36,198   Found link https://files.pythonhosted.org/packages/92/c5/5e920fe60a3122bcf29e71c61e829f4282a80dd74be60fd0d0d41b199403/seqlib-0.0.3.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.3
2023-09-09T21:13:36,199   Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/f0/04/ff9d870e2c374d0fa0b8127b0ab225c241fa6cbe28cb9cc58ad901fa0dd5/seqlib-0.0.5-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/)
2023-09-09T21:13:36,200   Found link https://files.pythonhosted.org/packages/98/24/83eecf315d536649ef65bfa3f99cf3115674f5ab46217e6a8126256d96a2/seqlib-0.0.5.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.5
2023-09-09T21:13:36,201   Skipping link: No binaries permitted for seqlib: https://files.pythonhosted.org/packages/07/06/4177555c0421661b1d3d8a6d60c25df7527a4653792f76f6077a217f9e2b/seqlib-0.0.6-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/seqlib/)
2023-09-09T21:13:36,202   Found link https://files.pythonhosted.org/packages/62/35/8b843ab21b0a4cd669088097615d2a4008d683137485825f925bb3cb753b/seqlib-0.0.6.tar.gz (from https://pypi.org/simple/seqlib/), version: 0.0.6
2023-09-09T21:13:36,203 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqlib/
2023-09-09T21:13:36,204 Getting page https://www.piwheels.org/simple/seqlib/
2023-09-09T21:13:36,207 Found index url https://www.piwheels.org/simple/
2023-09-09T21:13:36,569 Fetched page https://www.piwheels.org/simple/seqlib/ as text/html
2023-09-09T21:13:36,571 Skipping link: not a file: https://www.piwheels.org/simple/seqlib/
2023-09-09T21:13:36,571 Skipping link: not a file: https://pypi.org/simple/seqlib/
2023-09-09T21:13:36,590 Given no hashes to check 1 links for project 'seqlib': discarding no candidates
2023-09-09T21:13:36,608 Collecting seqlib==0.0.2
2023-09-09T21:13:36,610   Created temporary directory: /tmp/pip-unpack-rktd7l8_
2023-09-09T21:13:36,822   Downloading seqlib-0.0.2.tar.gz (5.0 kB)
2023-09-09T21:13:36,849   Added seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-rx27nw77'
2023-09-09T21:13:36,850   Running setup.py (path:/tmp/pip-wheel-mtxn8gz8/seqlib_2adce3c6600c469a9b3e09eb3b8f215f/setup.py) egg_info for package seqlib
2023-09-09T21:13:36,851   Created temporary directory: /tmp/pip-pip-egg-info-04jh6t6d
2023-09-09T21:13:36,852   Preparing metadata (setup.py): started
2023-09-09T21:13:36,853   Running command python setup.py egg_info
2023-09-09T21:13:37,878   running egg_info
2023-09-09T21:13:37,879   creating /tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info
2023-09-09T21:13:37,902   writing /tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/PKG-INFO
2023-09-09T21:13:37,905   writing dependency_links to /tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/dependency_links.txt
2023-09-09T21:13:37,907   writing requirements to /tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/requires.txt
2023-09-09T21:13:37,908   writing top-level names to /tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/top_level.txt
2023-09-09T21:13:37,909   writing manifest file '/tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/SOURCES.txt'
2023-09-09T21:13:37,985   reading manifest file '/tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/SOURCES.txt'
2023-09-09T21:13:37,988   writing manifest file '/tmp/pip-pip-egg-info-04jh6t6d/seqlib.egg-info/SOURCES.txt'
2023-09-09T21:13:38,095   Preparing metadata (setup.py): finished with status 'done'
2023-09-09T21:13:38,099   Source in /tmp/pip-wheel-mtxn8gz8/seqlib_2adce3c6600c469a9b3e09eb3b8f215f has version 0.0.2, which satisfies requirement seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz
2023-09-09T21:13:38,100   Removed seqlib==0.0.2 from https://files.pythonhosted.org/packages/f4/6d/d435e3b52eac85931b422fb91c0072499fd6bf2407113b678a1fc7b45af3/seqlib-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-rx27nw77'
2023-09-09T21:13:38,105 Created temporary directory: /tmp/pip-unpack-1xoyam5h
2023-09-09T21:13:38,106 Created temporary directory: /tmp/pip-unpack-t0_0j4pw
2023-09-09T21:13:38,110 Building wheels for collected packages: seqlib
2023-09-09T21:13:38,115   Created temporary directory: /tmp/pip-wheel-oe6504_r
2023-09-09T21:13:38,115   Building wheel for seqlib (setup.py): started
2023-09-09T21:13:38,116   Destination directory: /tmp/pip-wheel-oe6504_r
2023-09-09T21:13:38,117   Running command python setup.py bdist_wheel
2023-09-09T21:13:39,098   running bdist_wheel
2023-09-09T21:13:39,167   running build
2023-09-09T21:13:39,167   running build_py
2023-09-09T21:13:39,193   creating build
2023-09-09T21:13:39,193   creating build/lib.linux-armv7l-cpython-311
2023-09-09T21:13:39,194   creating build/lib.linux-armv7l-cpython-311/seqlib
2023-09-09T21:13:39,195   copying src/seqlib/__init__.py -> build/lib.linux-armv7l-cpython-311/seqlib
2023-09-09T21:13:39,197   running build_ext
2023-09-09T21:13:39,205   creating tmp
2023-09-09T21:13:39,206   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c /tmp/tmpo7q9ka_z.cpp -o tmp/tmpo7q9ka_z.o -std=c++14
2023-09-09T21:13:39,271   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c /tmp/tmpvs8ehg9n.cpp -o tmp/tmpvs8ehg9n.o -fvisibility=hidden
2023-09-09T21:13:39,332   error: [Errno 2] No such file or directory: '/tmp/pip-wheel-mtxn8gz8/seqlib_2adce3c6600c469a9b3e09eb3b8f215f/lib/SeqLib/htslib/Makefile'
2023-09-09T21:13:39,439   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-09T21:13:39,453   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-09T21:13:39,453   exec(compile('"'"''"'"''"'"'
2023-09-09T21:13:39,453   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-09T21:13:39,453   #
2023-09-09T21:13:39,453   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-09T21:13:39,453   #   import from `distutils.core` to work with newer packaging standards.
2023-09-09T21:13:39,453   # - It provides a clear error message when setuptools is not installed.
2023-09-09T21:13:39,453   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-09T21:13:39,453   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-09T21:13:39,453   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-09T21:13:39,453   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-09T21:13:39,453   import os, sys, tokenize
2023-09-09T21:13:39,453   
2023-09-09T21:13:39,453   try:
2023-09-09T21:13:39,453       import setuptools
2023-09-09T21:13:39,453   except ImportError as error:
2023-09-09T21:13:39,453       print(
2023-09-09T21:13:39,453           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-09T21:13:39,453           "the build environment.",
2023-09-09T21:13:39,453           file=sys.stderr,
2023-09-09T21:13:39,453       )
2023-09-09T21:13:39,453       sys.exit(1)
2023-09-09T21:13:39,453   
2023-09-09T21:13:39,453   __file__ = %r
2023-09-09T21:13:39,453   sys.argv[0] = __file__
2023-09-09T21:13:39,453   
2023-09-09T21:13:39,453   if os.path.exists(__file__):
2023-09-09T21:13:39,453       filename = __file__
2023-09-09T21:13:39,453       with tokenize.open(__file__) as f:
2023-09-09T21:13:39,453           setup_py_code = f.read()
2023-09-09T21:13:39,453   else:
2023-09-09T21:13:39,453       filename = "<auto-generated setuptools caller>"
2023-09-09T21:13:39,453       setup_py_code = "from setuptools import setup; setup()"
2023-09-09T21:13:39,453   
2023-09-09T21:13:39,453   exec(compile(setup_py_code, filename, "exec"))
2023-09-09T21:13:39,453   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-mtxn8gz8/seqlib_2adce3c6600c469a9b3e09eb3b8f215f/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-oe6504_r[/]
2023-09-09T21:13:39,454   [bold magenta]cwd[/]: /tmp/pip-wheel-mtxn8gz8/seqlib_2adce3c6600c469a9b3e09eb3b8f215f/
2023-09-09T21:13:39,454   Building wheel for seqlib (setup.py): finished with status 'error'
2023-09-09T21:13:39,456   ERROR: Failed building wheel for seqlib
2023-09-09T21:13:39,457   Running setup.py clean for seqlib
2023-09-09T21:13:39,458   Running command python setup.py clean
2023-09-09T21:13:40,446   running clean
2023-09-09T21:13:40,494   removing 'build/lib.linux-armv7l-cpython-311' (and everything under it)
2023-09-09T21:13:40,496   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-09T21:13:40,497   'build/scripts-3.11' does not exist -- can't clean it
2023-09-09T21:13:40,497   removing 'build'
2023-09-09T21:13:40,603 Failed to build seqlib
2023-09-09T21:13:40,604 ERROR: Failed to build one or more wheels
2023-09-09T21:13:40,606 Exception information:
2023-09-09T21:13:40,606 Traceback (most recent call last):
2023-09-09T21:13:40,606   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-09T21:13:40,606     status = run_func(*args)
2023-09-09T21:13:40,606              ^^^^^^^^^^^^^^^
2023-09-09T21:13:40,606   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-09T21:13:40,606     return func(self, options, args)
2023-09-09T21:13:40,606            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T21:13:40,606   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-09T21:13:40,606     raise CommandError("Failed to build one or more wheels")
2023-09-09T21:13:40,606 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-09T21:13:40,609 Removed build tracker: '/tmp/pip-build-tracker-rx27nw77'