2023-09-09T22:46:22,856 Created temporary directory: /tmp/pip-build-tracker-v_ypsk1z
2023-09-09T22:46:22,857 Initialized build tracking at /tmp/pip-build-tracker-v_ypsk1z
2023-09-09T22:46:22,858 Created build tracker: /tmp/pip-build-tracker-v_ypsk1z
2023-09-09T22:46:22,858 Entered build tracker: /tmp/pip-build-tracker-v_ypsk1z
2023-09-09T22:46:22,859 Created temporary directory: /tmp/pip-wheel-5qu105lh
2023-09-09T22:46:22,862 Created temporary directory: /tmp/pip-ephem-wheel-cache-37soh4lw
2023-09-09T22:46:22,884 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-09T22:46:22,887 2 location(s) to search for versions of tredparse:
2023-09-09T22:46:22,887 * https://pypi.org/simple/tredparse/
2023-09-09T22:46:22,887 * https://www.piwheels.org/simple/tredparse/
2023-09-09T22:46:22,888 Fetching project page and analyzing links: https://pypi.org/simple/tredparse/
2023-09-09T22:46:22,889 Getting page https://pypi.org/simple/tredparse/
2023-09-09T22:46:22,890 Found index url https://pypi.org/simple/
2023-09-09T22:46:23,141 Fetched page https://pypi.org/simple/tredparse/ as application/vnd.pypi.simple.v1+json
2023-09-09T22:46:23,143   Found link https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz (from https://pypi.org/simple/tredparse/), version: 0.7.5
2023-09-09T22:46:23,143   Found link https://files.pythonhosted.org/packages/1d/5d/560a1d2764bbb1ab47c1928ed611e130b3ac09ec97e47a35ddf33eb1fd95/tredparse-0.7.6.tar.gz (from https://pypi.org/simple/tredparse/), version: 0.7.6
2023-09-09T22:46:23,144   Found link https://files.pythonhosted.org/packages/76/1c/2729e46ac407eb52816cbbac94b06d0f3669dc8a7c2ef4cb8976ab071bdc/tredparse-0.7.7.tar.gz (from https://pypi.org/simple/tredparse/), version: 0.7.7
2023-09-09T22:46:23,145   Found link https://files.pythonhosted.org/packages/c0/37/e706aade86900143a0c6c83ad022a4feac9f1d8fa3573265806033d4395b/tredparse-0.7.8.tar.gz (from https://pypi.org/simple/tredparse/), version: 0.7.8
2023-09-09T22:46:23,146   Found link https://files.pythonhosted.org/packages/33/32/abbebafed6afbee2bb41e4e0f8be78a4ec2a391dcfef86121acee06b435e/tredparse-1.1.12.tar.gz (from https://pypi.org/simple/tredparse/), version: 1.1.12
2023-09-09T22:46:23,146 Fetching project page and analyzing links: https://www.piwheels.org/simple/tredparse/
2023-09-09T22:46:23,147 Getting page https://www.piwheels.org/simple/tredparse/
2023-09-09T22:46:23,149 Found index url https://www.piwheels.org/simple/
2023-09-09T22:46:23,476 Fetched page https://www.piwheels.org/simple/tredparse/ as text/html
2023-09-09T22:46:23,477 Skipping link: not a file: https://www.piwheels.org/simple/tredparse/
2023-09-09T22:46:23,478 Skipping link: not a file: https://pypi.org/simple/tredparse/
2023-09-09T22:46:23,506 Given no hashes to check 1 links for project 'tredparse': discarding no candidates
2023-09-09T22:46:23,530 Collecting tredparse==0.7.5
2023-09-09T22:46:23,532   Created temporary directory: /tmp/pip-unpack-ksvlchyq
2023-09-09T22:46:23,778   Downloading tredparse-0.7.5.tar.gz (58 kB)
2023-09-09T22:46:23,869   Added tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz to build tracker '/tmp/pip-build-tracker-v_ypsk1z'
2023-09-09T22:46:23,871   Running setup.py (path:/tmp/pip-wheel-5qu105lh/tredparse_ae85e7e740304d80a66f9364406b9787/setup.py) egg_info for package tredparse
2023-09-09T22:46:23,872   Created temporary directory: /tmp/pip-pip-egg-info-r9tugsbw
2023-09-09T22:46:23,872   Preparing metadata (setup.py): started
2023-09-09T22:46:23,874   Running command python setup.py egg_info
2023-09-09T22:46:24,890   running egg_info
2023-09-09T22:46:24,891   creating /tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info
2023-09-09T22:46:24,915   writing /tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/PKG-INFO
2023-09-09T22:46:24,919   writing dependency_links to /tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/dependency_links.txt
2023-09-09T22:46:24,921   writing requirements to /tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/requires.txt
2023-09-09T22:46:24,922   writing top-level names to /tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/top_level.txt
2023-09-09T22:46:24,923   writing manifest file '/tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/SOURCES.txt'
2023-09-09T22:46:25,046   reading manifest file '/tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/SOURCES.txt'
2023-09-09T22:46:25,047   reading manifest template 'MANIFEST.in'
2023-09-09T22:46:25,050   adding license file 'LICENSE'
2023-09-09T22:46:25,052   writing manifest file '/tmp/pip-pip-egg-info-r9tugsbw/tredparse.egg-info/SOURCES.txt'
2023-09-09T22:46:25,164   Preparing metadata (setup.py): finished with status 'done'
2023-09-09T22:46:25,168   Source in /tmp/pip-wheel-5qu105lh/tredparse_ae85e7e740304d80a66f9364406b9787 has version 0.7.5, which satisfies requirement tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz
2023-09-09T22:46:25,169   Removed tredparse==0.7.5 from https://files.pythonhosted.org/packages/27/ce/05332b56a32fa249b226f606bca1b6ad4c0292a8a26541a10f23cea87234/tredparse-0.7.5.tar.gz from build tracker '/tmp/pip-build-tracker-v_ypsk1z'
2023-09-09T22:46:25,173 Created temporary directory: /tmp/pip-unpack-s_twg68z
2023-09-09T22:46:25,174 Created temporary directory: /tmp/pip-unpack-dr2rynw2
2023-09-09T22:46:25,180 Building wheels for collected packages: tredparse
2023-09-09T22:46:25,184   Created temporary directory: /tmp/pip-wheel-orfwgn_9
2023-09-09T22:46:25,185   Building wheel for tredparse (setup.py): started
2023-09-09T22:46:25,186   Destination directory: /tmp/pip-wheel-orfwgn_9
2023-09-09T22:46:25,187   Running command python setup.py bdist_wheel
2023-09-09T22:46:26,181   running bdist_wheel
2023-09-09T22:46:26,276   running build
2023-09-09T22:46:26,277   running build_py
2023-09-09T22:46:26,303   creating build
2023-09-09T22:46:26,304   creating build/lib.linux-armv7l-cpython-311
2023-09-09T22:46:26,304   creating build/lib.linux-armv7l-cpython-311/ssw
2023-09-09T22:46:26,306   copying src/__init__.py -> build/lib.linux-armv7l-cpython-311/ssw
2023-09-09T22:46:26,308   copying src/ssw_wrap.py -> build/lib.linux-armv7l-cpython-311/ssw
2023-09-09T22:46:26,311   creating build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,312   copying tredparse/meta.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,314   copying tredparse/jcvi.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,317   copying tredparse/bam_parser.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,320   copying tredparse/__init__.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,321   copying tredparse/utils.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,323   copying tredparse/models.py -> build/lib.linux-armv7l-cpython-311/tredparse
2023-09-09T22:46:26,326   running egg_info
2023-09-09T22:46:26,382   writing tredparse.egg-info/PKG-INFO
2023-09-09T22:46:26,385   writing dependency_links to tredparse.egg-info/dependency_links.txt
2023-09-09T22:46:26,387   writing requirements to tredparse.egg-info/requires.txt
2023-09-09T22:46:26,388   writing top-level names to tredparse.egg-info/top_level.txt
2023-09-09T22:46:26,415   reading manifest file 'tredparse.egg-info/SOURCES.txt'
2023-09-09T22:46:26,417   reading manifest template 'MANIFEST.in'
2023-09-09T22:46:26,420   adding license file 'LICENSE'
2023-09-09T22:46:26,422   writing manifest file 'tredparse.egg-info/SOURCES.txt'
2023-09-09T22:46:26,424   copying src/ssw.c -> build/lib.linux-armv7l-cpython-311/ssw
2023-09-09T22:46:26,427   copying src/ssw.h -> build/lib.linux-armv7l-cpython-311/ssw
2023-09-09T22:46:26,430   running build_ext
2023-09-09T22:46:26,938   building 'libssw' extension
2023-09-09T22:46:26,939   creating build/temp.linux-armv7l-cpython-311
2023-09-09T22:46:26,939   creating build/temp.linux-armv7l-cpython-311/src
2023-09-09T22:46:26,940   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc -I/usr/include/python3.11 -c src/ssw.c -o build/temp.linux-armv7l-cpython-311/src/ssw.o
2023-09-09T22:46:26,982   src/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory
2023-09-09T22:46:26,983      38 | #include <emmintrin.h>
2023-09-09T22:46:26,983         |          ^~~~~~~~~~~~~
2023-09-09T22:46:26,984   compilation terminated.
2023-09-09T22:46:26,986   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2023-09-09T22:46:27,132   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-09T22:46:27,146   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-09T22:46:27,146   exec(compile('"'"''"'"''"'"'
2023-09-09T22:46:27,146   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-09T22:46:27,146   #
2023-09-09T22:46:27,146   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-09T22:46:27,146   #   import from `distutils.core` to work with newer packaging standards.
2023-09-09T22:46:27,146   # - It provides a clear error message when setuptools is not installed.
2023-09-09T22:46:27,146   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-09T22:46:27,146   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-09T22:46:27,146   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-09T22:46:27,146   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-09T22:46:27,146   import os, sys, tokenize
2023-09-09T22:46:27,146   
2023-09-09T22:46:27,146   try:
2023-09-09T22:46:27,146       import setuptools
2023-09-09T22:46:27,146   except ImportError as error:
2023-09-09T22:46:27,146       print(
2023-09-09T22:46:27,146           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-09T22:46:27,146           "the build environment.",
2023-09-09T22:46:27,146           file=sys.stderr,
2023-09-09T22:46:27,146       )
2023-09-09T22:46:27,146       sys.exit(1)
2023-09-09T22:46:27,146   
2023-09-09T22:46:27,146   __file__ = %r
2023-09-09T22:46:27,146   sys.argv[0] = __file__
2023-09-09T22:46:27,146   
2023-09-09T22:46:27,146   if os.path.exists(__file__):
2023-09-09T22:46:27,146       filename = __file__
2023-09-09T22:46:27,146       with tokenize.open(__file__) as f:
2023-09-09T22:46:27,146           setup_py_code = f.read()
2023-09-09T22:46:27,146   else:
2023-09-09T22:46:27,146       filename = "<auto-generated setuptools caller>"
2023-09-09T22:46:27,146       setup_py_code = "from setuptools import setup; setup()"
2023-09-09T22:46:27,146   
2023-09-09T22:46:27,146   exec(compile(setup_py_code, filename, "exec"))
2023-09-09T22:46:27,146   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-5qu105lh/tredparse_ae85e7e740304d80a66f9364406b9787/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-orfwgn_9[/]
2023-09-09T22:46:27,146   [bold magenta]cwd[/]: /tmp/pip-wheel-5qu105lh/tredparse_ae85e7e740304d80a66f9364406b9787/
2023-09-09T22:46:27,147   Building wheel for tredparse (setup.py): finished with status 'error'
2023-09-09T22:46:27,148   ERROR: Failed building wheel for tredparse
2023-09-09T22:46:27,149   Running setup.py clean for tredparse
2023-09-09T22:46:27,150   Running command python setup.py clean
2023-09-09T22:46:28,359   running clean
2023-09-09T22:46:28,404   removing 'build/temp.linux-armv7l-cpython-311' (and everything under it)
2023-09-09T22:46:28,406   removing 'build/lib.linux-armv7l-cpython-311' (and everything under it)
2023-09-09T22:46:28,411   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-09T22:46:28,411   'build/scripts-3.11' does not exist -- can't clean it
2023-09-09T22:46:28,412   removing 'build'
2023-09-09T22:46:28,522 Failed to build tredparse
2023-09-09T22:46:28,523 ERROR: Failed to build one or more wheels
2023-09-09T22:46:28,525 Exception information:
2023-09-09T22:46:28,525 Traceback (most recent call last):
2023-09-09T22:46:28,525   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-09T22:46:28,525     status = run_func(*args)
2023-09-09T22:46:28,525              ^^^^^^^^^^^^^^^
2023-09-09T22:46:28,525   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-09T22:46:28,525     return func(self, options, args)
2023-09-09T22:46:28,525            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-09T22:46:28,525   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-09T22:46:28,525     raise CommandError("Failed to build one or more wheels")
2023-09-09T22:46:28,525 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-09T22:46:28,528 Removed build tracker: '/tmp/pip-build-tracker-v_ypsk1z'