2023-09-09T23:01:50,932 Created temporary directory: /tmp/pip-build-tracker-oaobj4fp 2023-09-09T23:01:50,933 Initialized build tracking at /tmp/pip-build-tracker-oaobj4fp 2023-09-09T23:01:50,933 Created build tracker: /tmp/pip-build-tracker-oaobj4fp 2023-09-09T23:01:50,934 Entered build tracker: /tmp/pip-build-tracker-oaobj4fp 2023-09-09T23:01:50,934 Created temporary directory: /tmp/pip-wheel-ofnajnk4 2023-09-09T23:01:50,937 Created temporary directory: /tmp/pip-ephem-wheel-cache-iqoxvnca 2023-09-09T23:01:50,960 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-09T23:01:50,964 2 location(s) to search for versions of hapflk: 2023-09-09T23:01:50,964 * https://pypi.org/simple/hapflk/ 2023-09-09T23:01:50,964 * https://www.piwheels.org/simple/hapflk/ 2023-09-09T23:01:50,964 Fetching project page and analyzing links: https://pypi.org/simple/hapflk/ 2023-09-09T23:01:50,965 Getting page https://pypi.org/simple/hapflk/ 2023-09-09T23:01:50,967 Found index url https://pypi.org/simple/ 2023-09-09T23:01:51,109 Fetched page https://pypi.org/simple/hapflk/ as application/vnd.pypi.simple.v1+json 2023-09-09T23:01:51,112 Found link https://files.pythonhosted.org/packages/b2/ad/85999140cbc66853d701f214fd6548aab07dc46fe29c2d8632c332e97689/hapflk-1.3.2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.2 2023-09-09T23:01:51,113 Found link https://files.pythonhosted.org/packages/ca/fa/51a8f51e01fbc13e8f4b36acbdb6d31188481f4c1ce440b8797ec769d910/hapflk-1.3.3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.3 2023-09-09T23:01:51,114 Found link https://files.pythonhosted.org/packages/63/d9/33d91f8a3376ab13ffc0a102caa32a2332fccda2db96009f7cf317593e1b/hapflk-1.3.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.4 2023-09-09T23:01:51,114 Found link https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev0 2023-09-09T23:01:51,115 Found link https://files.pythonhosted.org/packages/6b/81/cc8f04f774e8728b5167bc58ae12eb4fb2125b784a395fdfefb3e78f7733/hapflk-1.3.5.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev1 2023-09-09T23:01:51,116 Found link https://files.pythonhosted.org/packages/f8/34/1bd9c49ea13e6be4afec643acfe9f960ae6714fea4d5499a75988e81663e/hapflk-1.3.5.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev2 2023-09-09T23:01:51,117 Found link https://files.pythonhosted.org/packages/96/14/256f0eda9b570de3b48a7fcff1d062ab7694bd32e7f2ad7ef8bd483b926f/hapflk-1.3.5.dev3.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev3 2023-09-09T23:01:51,117 Found link https://files.pythonhosted.org/packages/aa/c6/c72917e6d4492061b47104c7922b0368c38be20b87bf3e0553d8824a9cfe/hapflk-1.3.5.dev4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev4 2023-09-09T23:01:51,118 Found link https://files.pythonhosted.org/packages/a4/96/4b534230ad9ea961235c5841bde1054bacbb574f88fe19324a776d4b0992/hapflk-1.3.5.dev5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5.dev5 2023-09-09T23:01:51,119 Found link https://files.pythonhosted.org/packages/5c/f9/f5bd0ea0712da4d11795fda5b40c44be0421a85d6b05f8e9687ce30b8089/hapflk-1.3.5.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.3.5 2023-09-09T23:01:51,119 Found link https://files.pythonhosted.org/packages/51/c4/ed7b823aa136185d750d60f53268cfb6804dcc87183dbe216135e63aa583/hapflk-1.4.tar.gz (from https://pypi.org/simple/hapflk/), version: 1.4 2023-09-09T23:01:51,120 Found link https://files.pythonhosted.org/packages/c6/a6/ed1b0c03bdb79de6f288c5e982af3afcaae7a26cdd00ff75dd98bf81a13e/hapflk-2.0.dev0.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev0 2023-09-09T23:01:51,121 Found link https://files.pythonhosted.org/packages/30/60/1dab8e6a54e7ef2c19a62114527d5512da17a09a590d5551610b2fce8195/hapflk-2.0.dev1.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev1 2023-09-09T23:01:51,121 Found link https://files.pythonhosted.org/packages/89/5d/fa3af0a5d868d5154d1516696a317c13bcb686706143ec2052f789e17017/hapflk-2.0.dev2.tar.gz (from https://pypi.org/simple/hapflk/), version: 2.0.dev2 2023-09-09T23:01:51,122 Fetching project page and analyzing links: https://www.piwheels.org/simple/hapflk/ 2023-09-09T23:01:51,123 Getting page https://www.piwheels.org/simple/hapflk/ 2023-09-09T23:01:51,124 Found index url https://www.piwheels.org/simple/ 2023-09-09T23:01:57,672 Fetched page https://www.piwheels.org/simple/hapflk/ as text/html 2023-09-09T23:01:57,693 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.3-cp34-cp34m-linux_armv7l.whl#sha256=4f02cb00f9b7473476979a98ce9531d641cf13cc2bc2b300a8d9c3d64d8deceb (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,694 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv6l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,695 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.3-cp35-cp35m-linux_armv7l.whl#sha256=b75ac5587497663f5dc6408cb449fac164d073dc6484492b692955d58e16cf6f (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,696 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.4-cp34-cp34m-linux_armv7l.whl#sha256=90f903ac669e6630c734222d9d32160aba9bcc7bccfa461f13f96d6003c1c935 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,697 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv6l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,697 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.4-cp35-cp35m-linux_armv7l.whl#sha256=800b7833e4834c2b1376c8720f91d0a268d68f015607f79809e1ee7029ef2037 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,698 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5-cp34-cp34m-linux_armv7l.whl#sha256=5a64b9b9dae78e36eca456a2e9709b21d7a7bdb908a3d47e2b6529e1a5a64d1b (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,699 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv6l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,700 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5-cp35-cp35m-linux_armv7l.whl#sha256=73ecd00dcf029388178f31b3cbf3c04cbb264f752a6d05214bd6df8db316df6f (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,701 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp34-cp34m-linux_armv7l.whl#sha256=7bc675908db24bc875711def8f5103a4072f0708f3aa25e4947ca14666b6175b (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,703 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv6l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,703 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev0-cp35-cp35m-linux_armv7l.whl#sha256=b3c6463a3333cb6d9246c27e81417b47bf70e14044a9c20fe9f11bed9b674215 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,704 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp34-cp34m-linux_armv7l.whl#sha256=bab3585f6d546ed89812d88ba4d53169fec7ed73ea4998b71ff15b044cac28fb (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,704 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv6l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,705 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev1-cp35-cp35m-linux_armv7l.whl#sha256=35e24788097f96d5805a7deb3fb82097bd48e535242bc017451a29d7b7330b64 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,706 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp34-cp34m-linux_armv7l.whl#sha256=12bd84214f6f58f4c6f555ae0634e7113ce57a3acdd1f6d868c9e7af24fa02b9 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,706 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv6l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,707 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev2-cp35-cp35m-linux_armv7l.whl#sha256=85ee36207b1cd90230358cc0a26778bda8e49013f9d5f7c8ceb5cea13e0dc6c1 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,707 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp34-cp34m-linux_armv7l.whl#sha256=12a3afe8bcb1936f5e30f374a25c6c3ad3f95ae5f59debcd89d3411d54899c86 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,707 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv6l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,708 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev3-cp35-cp35m-linux_armv7l.whl#sha256=e102a09db17e00ce4674077242b8abe77b140ccbc28084bc872a84f6a1f5dab0 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,708 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp34-cp34m-linux_armv7l.whl#sha256=ba9a150f4c149df5b850e3dd31a6b7c442c50be76885355dc4a61611769ea367 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,709 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv6l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,709 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev4-cp35-cp35m-linux_armv7l.whl#sha256=36fb4c6462ef30dda62684182251105eb2c822311065fd8ecd3b8a50f71ff244 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,710 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp34-cp34m-linux_armv7l.whl#sha256=fc973aad2b2ab1f031c8f17bd84b9707d283a7ce888fd944c7af2b0a925a4deb (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,710 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv6l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,711 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.3.5.dev5-cp35-cp35m-linux_armv7l.whl#sha256=2801d5ffbdc9b9fcbf8e6cce77a1514b01ca28f562e550bfd093296db4ef9a95 (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,712 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.4-cp34-cp34m-linux_armv7l.whl#sha256=fb3798d9a4c7b3e2fb4b977a8d6dc3ae44b4cb0102ca67167d58182da2bdce0b (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,712 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv6l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,713 Skipping link: No binaries permitted for hapflk: https://www.piwheels.org/simple/hapflk/hapflk-1.4-cp35-cp35m-linux_armv7l.whl#sha256=f7038eca9bba9d085b3b2ba6c6cba6778b3767a641d8c77b4a6770167d4d322d (from https://www.piwheels.org/simple/hapflk/) 2023-09-09T23:01:57,714 Skipping link: not a file: https://www.piwheels.org/simple/hapflk/ 2023-09-09T23:01:57,714 Skipping link: not a file: https://pypi.org/simple/hapflk/ 2023-09-09T23:01:57,734 Given no hashes to check 1 links for project 'hapflk': discarding no candidates 2023-09-09T23:01:57,752 Collecting hapflk==1.3.5.dev0 2023-09-09T23:01:57,754 Created temporary directory: /tmp/pip-unpack-g4n123ib 2023-09-09T23:01:58,325 Downloading hapflk-1.3.5.dev0.tar.gz (276 kB) 2023-09-09T23:01:58,550 Added hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-oaobj4fp' 2023-09-09T23:01:58,551 Running setup.py (path:/tmp/pip-wheel-ofnajnk4/hapflk_daa587aff40742bcbd8e4ddee7d50846/setup.py) egg_info for package hapflk 2023-09-09T23:01:58,552 Created temporary directory: /tmp/pip-pip-egg-info-73r2re2s 2023-09-09T23:01:58,553 Preparing metadata (setup.py): started 2023-09-09T23:01:58,554 Running command python setup.py egg_info 2023-09-09T23:01:59,269 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2023-09-09T23:01:59,269 self.metadata.version = self._normalize_version( 2023-09-09T23:01:59,307 running egg_info 2023-09-09T23:01:59,311 creating /tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info 2023-09-09T23:01:59,329 writing /tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/PKG-INFO 2023-09-09T23:01:59,331 writing dependency_links to /tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/dependency_links.txt 2023-09-09T23:01:59,333 writing top-level names to /tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/top_level.txt 2023-09-09T23:01:59,334 writing manifest file '/tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/SOURCES.txt' 2023-09-09T23:01:59,437 reading manifest file '/tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/SOURCES.txt' 2023-09-09T23:01:59,438 reading manifest template 'MANIFEST.in' 2023-09-09T23:01:59,441 adding license file 'LICENSE.txt' 2023-09-09T23:01:59,442 adding license file 'COPYING.txt' 2023-09-09T23:01:59,444 writing manifest file '/tmp/pip-pip-egg-info-73r2re2s/hapflk.egg-info/SOURCES.txt' 2023-09-09T23:01:59,557 Preparing metadata (setup.py): finished with status 'done' 2023-09-09T23:01:59,561 Source in /tmp/pip-wheel-ofnajnk4/hapflk_daa587aff40742bcbd8e4ddee7d50846 has version 1.3.5.dev0, which satisfies requirement hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz 2023-09-09T23:01:59,562 Removed hapflk==1.3.5.dev0 from https://files.pythonhosted.org/packages/65/21/a92bba282c49dcacbdb002ed60a7a9b2bddfb98f7eedc382a3d0c134abe7/hapflk-1.3.5.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-oaobj4fp' 2023-09-09T23:01:59,566 Created temporary directory: /tmp/pip-unpack-24jnt91z 2023-09-09T23:01:59,567 Created temporary directory: /tmp/pip-unpack-bz0wfq_x 2023-09-09T23:01:59,569 Building wheels for collected packages: hapflk 2023-09-09T23:01:59,573 Created temporary directory: /tmp/pip-wheel-mg_upyb7 2023-09-09T23:01:59,574 Building wheel for hapflk (setup.py): started 2023-09-09T23:01:59,575 Destination directory: /tmp/pip-wheel-mg_upyb7 2023-09-09T23:01:59,576 Running command python setup.py bdist_wheel 2023-09-09T23:02:00,276 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2023-09-09T23:02:00,276 self.metadata.version = self._normalize_version( 2023-09-09T23:02:00,527 running bdist_wheel 2023-09-09T23:02:00,615 running build 2023-09-09T23:02:00,615 running build_py 2023-09-09T23:02:00,636 creating build 2023-09-09T23:02:00,637 creating build/lib.linux-armv7l-cpython-311 2023-09-09T23:02:00,638 creating build/lib.linux-armv7l-cpython-311/fastphase 2023-09-09T23:02:00,639 copying fastphase/__init__.py -> build/lib.linux-armv7l-cpython-311/fastphase 2023-09-09T23:02:00,641 creating build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,641 copying hapflk/__init__.py -> build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,643 copying hapflk/nj.py -> build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,645 copying hapflk/popgen.py -> build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,648 copying hapflk/data.py -> build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,650 copying hapflk/InputOutput.py -> build/lib.linux-armv7l-cpython-311/hapflk 2023-09-09T23:02:00,653 running build_ext 2023-09-09T23:02:00,660 building 'fastphase.fastphaseCython' extension 2023-09-09T23:02:00,660 creating build/temp.linux-armv7l-cpython-311 2023-09-09T23:02:00,661 creating build/temp.linux-armv7l-cpython-311/fastphase 2023-09-09T23:02:00,662 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c fastphase/fastphaseCython.c -o build/temp.linux-armv7l-cpython-311/fastphase/fastphaseCython.o 2023-09-09T23:02:01,034 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-09-09T23:02:01,035 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-09T23:02:01,035 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-09T23:02:01,036 from fastphase/fastphaseCython.c:242: 2023-09-09T23:02:01,036 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-09T23:02:01,037 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-09T23:02:01,037 | ^~~~~~~ 2023-09-09T23:02:01,075 fastphase/fastphaseCython.c: In function ‘__Pyx_ListComp_Append’: 2023-09-09T23:02:01,075 fastphase/fastphaseCython.c:916:23: error: lvalue required as left operand of assignment 2023-09-09T23:02:01,076 916 | Py_SIZE(list) = len+1; 2023-09-09T23:02:01,077 | ^ 2023-09-09T23:02:01,077 fastphase/fastphaseCython.c: In function ‘__Pyx_PyList_Append’: 2023-09-09T23:02:01,078 fastphase/fastphaseCython.c:975:23: error: lvalue required as left operand of assignment 2023-09-09T23:02:01,079 975 | Py_SIZE(list) = len+1; 2023-09-09T23:02:01,079 | ^ 2023-09-09T23:02:02,277 fastphase/fastphaseCython.c: In function ‘__Pyx_InitCachedConstants’: 2023-09-09T23:02:02,291 fastphase/fastphaseCython.c:15588:238: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,292 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,292 | ^~ 2023-09-09T23:02:02,293 | | 2023-09-09T23:02:02,294 | int 2023-09-09T23:02:02,294 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,295 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,295 | ^~~~~ 2023-09-09T23:02:02,296 In file included from /usr/include/python3.11/Python.h:71, 2023-09-09T23:02:02,296 from fastphase/fastphaseCython.c:4: 2023-09-09T23:02:02,297 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,297 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,297 | ^~~~~~~~~~ 2023-09-09T23:02:02,308 fastphase/fastphaseCython.c:15588:242: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,309 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,309 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,310 | | 2023-09-09T23:02:02,311 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,311 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,312 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,312 | ^~~~ 2023-09-09T23:02:02,313 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,314 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,314 | ^~~ 2023-09-09T23:02:02,325 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,325 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,326 | ^~~~~~~~~~ 2023-09-09T23:02:02,327 fastphase/fastphaseCython.c:15588:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,327 15588 | __pyx_codeobj__13 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__12, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 26, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__13)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 26; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,328 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,329 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,329 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,329 | ^~~~~~~~~~ 2023-09-09T23:02:02,340 fastphase/fastphaseCython.c:15600:244: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,341 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,341 | ^~ 2023-09-09T23:02:02,342 | | 2023-09-09T23:02:02,342 | int 2023-09-09T23:02:02,343 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,343 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,344 | ^~~~~ 2023-09-09T23:02:02,344 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,345 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,346 | ^~~~~~~~~~ 2023-09-09T23:02:02,356 fastphase/fastphaseCython.c:15600:248: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,357 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,358 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,358 | | 2023-09-09T23:02:02,359 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,360 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,360 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,361 | ^~~~ 2023-09-09T23:02:02,361 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,361 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,362 | ^~~ 2023-09-09T23:02:02,373 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,373 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,374 | ^~~~~~~~~~ 2023-09-09T23:02:02,374 fastphase/fastphaseCython.c:15600:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,375 15600 | __pyx_codeobj__15 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__14, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_initUpdate, 32, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__15)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 32; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,375 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,376 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,376 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,377 | ^~~~~~~~~~ 2023-09-09T23:02:02,388 fastphase/fastphaseCython.c:15612:245: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,389 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,389 | ^~ 2023-09-09T23:02:02,390 | | 2023-09-09T23:02:02,390 | int 2023-09-09T23:02:02,391 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,391 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,392 | ^~~~~ 2023-09-09T23:02:02,392 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,393 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,394 | ^~~~~~~~~~ 2023-09-09T23:02:02,404 fastphase/fastphaseCython.c:15612:249: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,405 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,405 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,406 | | 2023-09-09T23:02:02,406 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,407 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,407 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,408 | ^~~~ 2023-09-09T23:02:02,408 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,409 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,410 | ^~~ 2023-09-09T23:02:02,421 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,422 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,422 | ^~~~~~~~~~ 2023-09-09T23:02:02,423 fastphase/fastphaseCython.c:15612:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,423 15612 | __pyx_codeobj__17 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__16, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addIndivFit, 38, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__17)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 38; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,424 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,424 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,425 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,425 | ^~~~~~~~~~ 2023-09-09T23:02:02,436 fastphase/fastphaseCython.c:15624:240: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,437 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,437 | ^~ 2023-09-09T23:02:02,438 | | 2023-09-09T23:02:02,438 | int 2023-09-09T23:02:02,439 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,440 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,440 | ^~~~~ 2023-09-09T23:02:02,441 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,441 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,442 | ^~~~~~~~~~ 2023-09-09T23:02:02,452 fastphase/fastphaseCython.c:15624:244: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,453 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,454 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,454 | | 2023-09-09T23:02:02,455 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,456 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,456 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,457 | ^~~~ 2023-09-09T23:02:02,457 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,458 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,458 | ^~~ 2023-09-09T23:02:02,469 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,469 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,470 | ^~~~~~~~~~ 2023-09-09T23:02:02,470 fastphase/fastphaseCython.c:15624:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,471 15624 | __pyx_codeobj__19 = (PyObject*)__Pyx_PyCode_New(1, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__18, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_update, 44, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__19)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 44; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,472 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,472 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,473 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,473 | ^~~~~~~~~~ 2023-09-09T23:02:02,484 fastphase/fastphaseCython.c:15636:239: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,484 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,485 | ^~ 2023-09-09T23:02:02,485 | | 2023-09-09T23:02:02,486 | int 2023-09-09T23:02:02,486 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,487 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,487 | ^~~~~ 2023-09-09T23:02:02,488 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,489 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,489 | ^~~~~~~~~~ 2023-09-09T23:02:02,501 fastphase/fastphaseCython.c:15636:243: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,501 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,502 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,502 | | 2023-09-09T23:02:02,503 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,504 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,504 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,505 | ^~~~ 2023-09-09T23:02:02,505 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,505 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,506 | ^~~ 2023-09-09T23:02:02,518 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,518 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,519 | ^~~~~~~~~~ 2023-09-09T23:02:02,519 fastphase/fastphaseCython.c:15636:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,520 15636 | __pyx_codeobj__21 = (PyObject*)__Pyx_PyCode_New(2, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__20, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_write, 69, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__21)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 69; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,520 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,521 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,522 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,522 | ^~~~~~~~~~ 2023-09-09T23:02:02,534 fastphase/fastphaseCython.c:15648:238: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,534 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,535 | ^~ 2023-09-09T23:02:02,536 | | 2023-09-09T23:02:02,536 | int 2023-09-09T23:02:02,537 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,537 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,538 | ^~~~~ 2023-09-09T23:02:02,539 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,539 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,540 | ^~~~~~~~~~ 2023-09-09T23:02:02,552 fastphase/fastphaseCython.c:15648:242: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,552 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,553 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,553 | | 2023-09-09T23:02:02,554 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,554 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,555 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,555 | ^~~~ 2023-09-09T23:02:02,556 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,556 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,557 | ^~~ 2023-09-09T23:02:02,568 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,569 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,570 | ^~~~~~~~~~ 2023-09-09T23:02:02,570 fastphase/fastphaseCython.c:15648:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,571 15648 | __pyx_codeobj__23 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__22, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_init, 85, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__23)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 85; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,571 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,572 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,573 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,573 | ^~~~~~~~~~ 2023-09-09T23:02:02,583 fastphase/fastphaseCython.c:15660:239: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,584 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,585 | ^~ 2023-09-09T23:02:02,585 | | 2023-09-09T23:02:02,586 | int 2023-09-09T23:02:02,586 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,587 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,587 | ^~~~~ 2023-09-09T23:02:02,588 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,588 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,589 | ^~~~~~~~~~ 2023-09-09T23:02:02,600 fastphase/fastphaseCython.c:15660:243: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,600 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,601 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,601 | | 2023-09-09T23:02:02,602 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,603 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,603 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,604 | ^~~~ 2023-09-09T23:02:02,604 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,605 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,605 | ^~~ 2023-09-09T23:02:02,616 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,616 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,617 | ^~~~~~~~~~ 2023-09-09T23:02:02,617 fastphase/fastphaseCython.c:15660:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,618 15660 | __pyx_codeobj__25 = (PyObject*)__Pyx_PyCode_New(1, 0, 1, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__24, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_flush, 90, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__25)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 90; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,619 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,619 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,620 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,620 | ^~~~~~~~~~ 2023-09-09T23:02:02,631 fastphase/fastphaseCython.c:15672:246: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,632 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,632 | ^~ 2023-09-09T23:02:02,632 | | 2023-09-09T23:02:02,633 | int 2023-09-09T23:02:02,633 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,634 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,635 | ^~~~~ 2023-09-09T23:02:02,636 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,636 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,637 | ^~~~~~~~~~ 2023-09-09T23:02:02,648 fastphase/fastphaseCython.c:15672:250: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,649 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,649 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,650 | | 2023-09-09T23:02:02,650 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,651 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,652 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,652 | ^~~~ 2023-09-09T23:02:02,652 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,653 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,653 | ^~~ 2023-09-09T23:02:02,665 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,666 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,666 | ^~~~~~~~~~ 2023-09-09T23:02:02,666 fastphase/fastphaseCython.c:15672:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,667 15672 | __pyx_codeobj__27 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__26, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addHaplotype, 96, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__27)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 96; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,667 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,668 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,668 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,669 | ^~~~~~~~~~ 2023-09-09T23:02:02,680 fastphase/fastphaseCython.c:15687:245: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,681 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,681 | ^~~ 2023-09-09T23:02:02,682 | | 2023-09-09T23:02:02,682 | int 2023-09-09T23:02:02,683 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,683 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,684 | ^~~~~ 2023-09-09T23:02:02,685 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,685 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,686 | ^~~~~~~~~~ 2023-09-09T23:02:02,697 fastphase/fastphaseCython.c:15687:250: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,697 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,698 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,698 | | 2023-09-09T23:02:02,698 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,699 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,699 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,700 | ^~~~ 2023-09-09T23:02:02,700 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,701 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,702 | ^~~ 2023-09-09T23:02:02,714 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,715 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,715 | ^~~~~~~~~~ 2023-09-09T23:02:02,716 fastphase/fastphaseCython.c:15687:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,716 15687 | __pyx_codeobj__30 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__29, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_addGenotype, 108, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__30)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 108; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,717 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,717 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,718 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,718 | ^~~~~~~~~~ 2023-09-09T23:02:02,730 fastphase/fastphaseCython.c:15702:238: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,731 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,732 | ^~~ 2023-09-09T23:02:02,732 | | 2023-09-09T23:02:02,733 | int 2023-09-09T23:02:02,733 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,734 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,734 | ^~~~~ 2023-09-09T23:02:02,734 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,735 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,735 | ^~~~~~~~~~ 2023-09-09T23:02:02,748 fastphase/fastphaseCython.c:15702:243: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,749 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,749 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,750 | | 2023-09-09T23:02:02,751 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,751 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,752 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,753 | ^~~~ 2023-09-09T23:02:02,753 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,754 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,754 | ^~~ 2023-09-09T23:02:02,766 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,767 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,768 | ^~~~~~~~~~ 2023-09-09T23:02:02,768 fastphase/fastphaseCython.c:15702:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,769 15702 | __pyx_codeobj__33 = (PyObject*)__Pyx_PyCode_New(6, 0, 19, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__32, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_fit, 120, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__33)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 120; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,770 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,770 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,771 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,771 | ^~~~~~~~~~ 2023-09-09T23:02:02,782 fastphase/fastphaseCython.c:15717:241: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-09T23:02:02,783 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,783 | ^~~ 2023-09-09T23:02:02,784 | | 2023-09-09T23:02:02,784 | int 2023-09-09T23:02:02,785 fastphase/fastphaseCython.c:61:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,785 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,786 | ^~~~~ 2023-09-09T23:02:02,786 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-09T23:02:02,787 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,788 | ^~~~~~~~~~ 2023-09-09T23:02:02,799 fastphase/fastphaseCython.c:15717:246: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-09T23:02:02,799 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,800 | ^~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,801 | | 2023-09-09T23:02:02,801 | PyObject * {aka struct _object *} 2023-09-09T23:02:02,802 fastphase/fastphaseCython.c:61:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,802 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,803 | ^~~~ 2023-09-09T23:02:02,803 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-09T23:02:02,804 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-09T23:02:02,804 | ^~~ 2023-09-09T23:02:02,815 fastphase/fastphaseCython.c:61:11: error: too few arguments to function ‘PyCode_New’ 2023-09-09T23:02:02,816 61 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-09T23:02:02,816 | ^~~~~~~~~~ 2023-09-09T23:02:02,817 fastphase/fastphaseCython.c:15717:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-09T23:02:02,817 15717 | __pyx_codeobj__36 = (PyObject*)__Pyx_PyCode_New(3, 0, 15, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__35, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_mnt_dynfs_home_Code_python_pack, __pyx_n_s_impute, 172, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__36)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 172; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-09T23:02:02,818 | ^~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,818 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-09T23:02:02,819 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-09T23:02:02,820 | ^~~~~~~~~~ 2023-09-09T23:02:02,836 fastphase/fastphaseCython.c: In function ‘__Pyx_ParseOptionalKeywords’: 2023-09-09T23:02:02,851 fastphase/fastphaseCython.c:16241:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-09T23:02:02,852 16241 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-09T23:02:02,852 | ^ 2023-09-09T23:02:02,853 In file included from /usr/include/python3.11/unicodeobject.h:1042, 2023-09-09T23:02:02,854 from /usr/include/python3.11/Python.h:51: 2023-09-09T23:02:02,854 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-09T23:02:02,855 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-09T23:02:02,856 | ^~~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,869 fastphase/fastphaseCython.c:16241:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-09T23:02:02,870 16241 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-09T23:02:02,871 | ^ 2023-09-09T23:02:02,871 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-09T23:02:02,872 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-09T23:02:02,872 | ^~~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,889 fastphase/fastphaseCython.c:16257:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-09T23:02:02,889 16257 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-09T23:02:02,890 | ^ 2023-09-09T23:02:02,891 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-09T23:02:02,892 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-09T23:02:02,892 | ^~~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,907 fastphase/fastphaseCython.c:16257:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-09T23:02:02,907 16257 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-09T23:02:02,908 | ^ 2023-09-09T23:02:02,908 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-09T23:02:02,908 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-09T23:02:02,909 | ^~~~~~~~~~~~~~~~~~ 2023-09-09T23:02:02,918 fastphase/fastphaseCython.c: At top level: 2023-09-09T23:02:02,933 fastphase/fastphaseCython.c:16295:12: fatal error: longintrepr.h: No such file or directory 2023-09-09T23:02:02,934 16295 | #include "longintrepr.h" 2023-09-09T23:02:02,935 | ^~~~~~~~~~~~~~~ 2023-09-09T23:02:02,935 compilation terminated. 2023-09-09T23:02:02,939 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-09T23:02:03,068 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-09T23:02:03,082 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-09T23:02:03,082 exec(compile('"'"''"'"''"'"' 2023-09-09T23:02:03,082 # This is -- a caller that pip uses to run setup.py 2023-09-09T23:02:03,082 # 2023-09-09T23:02:03,082 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-09T23:02:03,082 # import from `distutils.core` to work with newer packaging standards. 2023-09-09T23:02:03,082 # - It provides a clear error message when setuptools is not installed. 2023-09-09T23:02:03,082 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-09T23:02:03,082 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-09T23:02:03,082 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-09T23:02:03,082 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-09T23:02:03,082 import os, sys, tokenize 2023-09-09T23:02:03,082 2023-09-09T23:02:03,082 try: 2023-09-09T23:02:03,082 import setuptools 2023-09-09T23:02:03,082 except ImportError as error: 2023-09-09T23:02:03,082 print( 2023-09-09T23:02:03,082 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-09T23:02:03,082 "the build environment.", 2023-09-09T23:02:03,082 file=sys.stderr, 2023-09-09T23:02:03,082 ) 2023-09-09T23:02:03,082 sys.exit(1) 2023-09-09T23:02:03,082 2023-09-09T23:02:03,082 __file__ = %r 2023-09-09T23:02:03,082 sys.argv[0] = __file__ 2023-09-09T23:02:03,082 2023-09-09T23:02:03,082 if os.path.exists(__file__): 2023-09-09T23:02:03,082 filename = __file__ 2023-09-09T23:02:03,082 with tokenize.open(__file__) as f: 2023-09-09T23:02:03,082 setup_py_code = f.read() 2023-09-09T23:02:03,082 else: 2023-09-09T23:02:03,082 filename = "" 2023-09-09T23:02:03,082 setup_py_code = "from setuptools import setup; setup()" 2023-09-09T23:02:03,082 2023-09-09T23:02:03,082 exec(compile(setup_py_code, filename, "exec")) 2023-09-09T23:02:03,082 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ofnajnk4/hapflk_daa587aff40742bcbd8e4ddee7d50846/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-mg_upyb7[/] 2023-09-09T23:02:03,082 [bold magenta]cwd[/]: /tmp/pip-wheel-ofnajnk4/hapflk_daa587aff40742bcbd8e4ddee7d50846/ 2023-09-09T23:02:03,083 Building wheel for hapflk (setup.py): finished with status 'error' 2023-09-09T23:02:03,084 ERROR: Failed building wheel for hapflk 2023-09-09T23:02:03,086 Running setup.py clean for hapflk 2023-09-09T23:02:03,087 Running command python setup.py clean 2023-09-09T23:02:03,786 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '1.3.5-dev' to '1.3.5.dev0' 2023-09-09T23:02:03,786 self.metadata.version = self._normalize_version( 2023-09-09T23:02:03,815 running clean 2023-09-09T23:02:03,851 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-09T23:02:03,852 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-09T23:02:03,856 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-09T23:02:03,856 'build/scripts-3.11' does not exist -- can't clean it 2023-09-09T23:02:03,857 removing 'build' 2023-09-09T23:02:03,966 Failed to build hapflk 2023-09-09T23:02:03,967 ERROR: Failed to build one or more wheels 2023-09-09T23:02:03,968 Exception information: 2023-09-09T23:02:03,968 Traceback (most recent call last): 2023-09-09T23:02:03,968 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-09T23:02:03,968 status = run_func(*args) 2023-09-09T23:02:03,968 ^^^^^^^^^^^^^^^ 2023-09-09T23:02:03,968 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-09T23:02:03,968 return func(self, options, args) 2023-09-09T23:02:03,968 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-09T23:02:03,968 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-09T23:02:03,968 raise CommandError("Failed to build one or more wheels") 2023-09-09T23:02:03,968 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-09T23:02:03,971 Removed build tracker: '/tmp/pip-build-tracker-oaobj4fp'