2023-09-09T23:01:53,355 Created temporary directory: /tmp/pip-build-tracker-7xwh17ne
2023-09-09T23:01:53,356 Initialized build tracking at /tmp/pip-build-tracker-7xwh17ne
2023-09-09T23:01:53,357 Created build tracker: /tmp/pip-build-tracker-7xwh17ne
2023-09-09T23:01:53,357 Entered build tracker: /tmp/pip-build-tracker-7xwh17ne
2023-09-09T23:01:53,358 Created temporary directory: /tmp/pip-wheel-lw9im6d3
2023-09-09T23:01:53,361 Created temporary directory: /tmp/pip-ephem-wheel-cache-ecq_vala
2023-09-09T23:01:53,383 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-09T23:01:53,386 2 location(s) to search for versions of pyknotid:
2023-09-09T23:01:53,386 * https://pypi.org/simple/pyknotid/
2023-09-09T23:01:53,386 * https://www.piwheels.org/simple/pyknotid/
2023-09-09T23:01:53,387 Fetching project page and analyzing links: https://pypi.org/simple/pyknotid/
2023-09-09T23:01:53,388 Getting page https://pypi.org/simple/pyknotid/
2023-09-09T23:01:53,389 Found index url https://pypi.org/simple/
2023-09-09T23:01:53,528 Fetched page https://pypi.org/simple/pyknotid/ as application/vnd.pypi.simple.v1+json
2023-09-09T23:01:53,530   Found link https://files.pythonhosted.org/packages/c6/68/a0a49196c04943236d7e241eb43905039f902746525548eebc5a76f6a8fc/pyknotid-0.5.0.tar.gz (from https://pypi.org/simple/pyknotid/), version: 0.5.0
2023-09-09T23:01:53,530   Found link https://files.pythonhosted.org/packages/3b/19/8effd52995cd780e151698aedb48e5c6c3848badee953f5fdfe4f89d2a08/pyknotid-0.5.1.tar.gz (from https://pypi.org/simple/pyknotid/), version: 0.5.1
2023-09-09T23:01:53,531   Found link https://files.pythonhosted.org/packages/ee/27/5a218a3f30e32a06eba33013b545e12b6b3a219bf58a9ad2c2d126cd9902/pyknotid-0.5.2.tar.gz (from https://pypi.org/simple/pyknotid/), version: 0.5.2
2023-09-09T23:01:53,532   Found link https://files.pythonhosted.org/packages/e8/a9/41638ff95c1f2abe19e7942eb3e7d9584c24cc4a99d88476d85eb52e5a1d/pyknotid-0.5.3.tar.gz (from https://pypi.org/simple/pyknotid/), version: 0.5.3
2023-09-09T23:01:53,532 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyknotid/
2023-09-09T23:01:53,533 Getting page https://www.piwheels.org/simple/pyknotid/
2023-09-09T23:01:53,535 Found index url https://www.piwheels.org/simple/
2023-09-09T23:02:00,465 Fetched page https://www.piwheels.org/simple/pyknotid/ as text/html
2023-09-09T23:02:00,482   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp34-cp34m-linux_armv7l.whl#sha256=67eb32a8247d4793837048ac033bfe6fd9e66820724cc15b0acd7f98d8abc718 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,483   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp35-cp35m-linux_armv6l.whl#sha256=829fa7b0c0ffc4420eede44d8b6fdf706ebbcebba85eb01df8f2d8cc0d79e55f (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,484   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp35-cp35m-linux_armv7l.whl#sha256=829fa7b0c0ffc4420eede44d8b6fdf706ebbcebba85eb01df8f2d8cc0d79e55f (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,485   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp37-cp37m-linux_armv6l.whl#sha256=42b563409cdb84306a0db961ea7d8790e1544d2a519acc4fd6e3031f262428c4 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,485   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp37-cp37m-linux_armv7l.whl#sha256=42b563409cdb84306a0db961ea7d8790e1544d2a519acc4fd6e3031f262428c4 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,486   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp39-cp39-linux_armv6l.whl#sha256=83c0e852f21b40cc856dfebd22ff14b744d1e47766ed5dff2f3fd86a4d37406b (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,487   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.0-cp39-cp39-linux_armv7l.whl#sha256=83c0e852f21b40cc856dfebd22ff14b744d1e47766ed5dff2f3fd86a4d37406b (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,488   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp34-cp34m-linux_armv7l.whl#sha256=4fdd7e07ca6948ca06d63ec860830a3b497f56ad3d58a3f57fe0e91b121d3b76 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,489   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp35-cp35m-linux_armv6l.whl#sha256=bb7ba6072d5d6f59b4dd2f61886e13b4369d8a241af0c4b0ba39bc82ccd5d27e (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,490   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp35-cp35m-linux_armv7l.whl#sha256=bb7ba6072d5d6f59b4dd2f61886e13b4369d8a241af0c4b0ba39bc82ccd5d27e (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,491   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp37-cp37m-linux_armv6l.whl#sha256=6bfa62fda15e6de40ef97828601295a6e33314d162f0913f6ce626682c803c46 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,491   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp37-cp37m-linux_armv7l.whl#sha256=6bfa62fda15e6de40ef97828601295a6e33314d162f0913f6ce626682c803c46 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,492   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp39-cp39-linux_armv6l.whl#sha256=c431dd15482c31454930c42846ab9bc97cd2f63b0a7e1cb54b4f86bdd1483725 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,493   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.1-cp39-cp39-linux_armv7l.whl#sha256=c431dd15482c31454930c42846ab9bc97cd2f63b0a7e1cb54b4f86bdd1483725 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,493   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp34-cp34m-linux_armv7l.whl#sha256=d2ef83b3e40746369b60bae6d45eb911079fdafa7cd5ee941fd86baed27d322c (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,494   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp35-cp35m-linux_armv6l.whl#sha256=3da8c7a45bc9462a0141fad9e4ba73c2e52ed1c3e4c332eb26a8bce4749fc396 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,495   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp35-cp35m-linux_armv7l.whl#sha256=3da8c7a45bc9462a0141fad9e4ba73c2e52ed1c3e4c332eb26a8bce4749fc396 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,496   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp37-cp37m-linux_armv6l.whl#sha256=54f6fa44401c37825f786bab198cba501bfe548a99f24bf98ea4008563262adb (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,497   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp37-cp37m-linux_armv7l.whl#sha256=54f6fa44401c37825f786bab198cba501bfe548a99f24bf98ea4008563262adb (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,497   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp39-cp39-linux_armv6l.whl#sha256=d4f87ad5ce47e0771f9704fe52eca65fc1ebce867edd41c2d81b49963bfe9dee (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,498   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.2-cp39-cp39-linux_armv7l.whl#sha256=d4f87ad5ce47e0771f9704fe52eca65fc1ebce867edd41c2d81b49963bfe9dee (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,499   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp34-cp34m-linux_armv6l.whl#sha256=ab52f03fb0fe0f545163699adf8626a64ffd4490a576b6da70d16241b25c933e (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,500   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp34-cp34m-linux_armv7l.whl#sha256=ab52f03fb0fe0f545163699adf8626a64ffd4490a576b6da70d16241b25c933e (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,501   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp35-cp35m-linux_armv6l.whl#sha256=ca00eb46aac36c5bf9f1ac0d8f85006b1370ee8f262ab85116c9f56f26f15e87 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,502   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp35-cp35m-linux_armv7l.whl#sha256=ca00eb46aac36c5bf9f1ac0d8f85006b1370ee8f262ab85116c9f56f26f15e87 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,502   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp37-cp37m-linux_armv6l.whl#sha256=1c1db3e7f1452b036056d57da0729804a1551072f0c41b78d925eb8c2a4bee51 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,503   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp37-cp37m-linux_armv7l.whl#sha256=1c1db3e7f1452b036056d57da0729804a1551072f0c41b78d925eb8c2a4bee51 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,504   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp39-cp39-linux_armv6l.whl#sha256=ab3279ba81c7aeb43fc112c590712ded08ed1d294475853d4fba98b97636e5b2 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,504   Skipping link: No binaries permitted for pyknotid: https://www.piwheels.org/simple/pyknotid/pyknotid-0.5.3-cp39-cp39-linux_armv7l.whl#sha256=ab3279ba81c7aeb43fc112c590712ded08ed1d294475853d4fba98b97636e5b2 (from https://www.piwheels.org/simple/pyknotid/)
2023-09-09T23:02:00,505 Skipping link: not a file: https://www.piwheels.org/simple/pyknotid/
2023-09-09T23:02:00,506 Skipping link: not a file: https://pypi.org/simple/pyknotid/
2023-09-09T23:02:00,541 Given no hashes to check 1 links for project 'pyknotid': discarding no candidates
2023-09-09T23:02:00,573 Collecting pyknotid==0.5.1
2023-09-09T23:02:00,576   Created temporary directory: /tmp/pip-unpack-0i3dmxew
2023-09-09T23:02:00,791   Downloading pyknotid-0.5.1.tar.gz (600 kB)
2023-09-09T23:02:01,162   Added pyknotid==0.5.1 from https://files.pythonhosted.org/packages/3b/19/8effd52995cd780e151698aedb48e5c6c3848badee953f5fdfe4f89d2a08/pyknotid-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-7xwh17ne'
2023-09-09T23:02:01,164   Running setup.py (path:/tmp/pip-wheel-lw9im6d3/pyknotid_3c42e02317ca45e695946abdd21ebe0a/setup.py) egg_info for package pyknotid
2023-09-09T23:02:01,165   Created temporary directory: /tmp/pip-pip-egg-info-vs7_es31
2023-09-09T23:02:01,165   Preparing metadata (setup.py): started
2023-09-09T23:02:01,167   Running command python setup.py egg_info
2023-09-09T23:02:02,216   Cython or numpy could not be imported, so cythonised calculation functions will not be built. pyknotid will use Python-only routines instead. These are slower, but will return the same result.
2023-09-09T23:02:02,216   To build the cython components, install cython and numpy and rebuild pyknotid.
2023-09-09T23:02:02,216   running egg_info
2023-09-09T23:02:02,218   creating /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info
2023-09-09T23:02:02,242   writing /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/PKG-INFO
2023-09-09T23:02:02,245   writing dependency_links to /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/dependency_links.txt
2023-09-09T23:02:02,246   writing entry points to /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/entry_points.txt
2023-09-09T23:02:02,247   writing requirements to /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/requires.txt
2023-09-09T23:02:02,248   writing top-level names to /tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/top_level.txt
2023-09-09T23:02:02,250   writing manifest file '/tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/SOURCES.txt'
2023-09-09T23:02:02,335   reading manifest file '/tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/SOURCES.txt'
2023-09-09T23:02:02,340   writing manifest file '/tmp/pip-pip-egg-info-vs7_es31/pyknotid.egg-info/SOURCES.txt'
2023-09-09T23:02:02,452   Preparing metadata (setup.py): finished with status 'done'
2023-09-09T23:02:02,456   Source in /tmp/pip-wheel-lw9im6d3/pyknotid_3c42e02317ca45e695946abdd21ebe0a has version 0.5.1, which satisfies requirement pyknotid==0.5.1 from https://files.pythonhosted.org/packages/3b/19/8effd52995cd780e151698aedb48e5c6c3848badee953f5fdfe4f89d2a08/pyknotid-0.5.1.tar.gz
2023-09-09T23:02:02,457   Removed pyknotid==0.5.1 from https://files.pythonhosted.org/packages/3b/19/8effd52995cd780e151698aedb48e5c6c3848badee953f5fdfe4f89d2a08/pyknotid-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-7xwh17ne'
2023-09-09T23:02:02,461 Created temporary directory: /tmp/pip-unpack-_w51nm3m
2023-09-09T23:02:02,462 Created temporary directory: /tmp/pip-unpack-i4nqxpar
2023-09-09T23:02:02,472 Building wheels for collected packages: pyknotid
2023-09-09T23:02:02,476   Created temporary directory: /tmp/pip-wheel-c837zbw5
2023-09-09T23:02:02,477   Building wheel for pyknotid (setup.py): started
2023-09-09T23:02:02,478   Destination directory: /tmp/pip-wheel-c837zbw5
2023-09-09T23:02:02,479   Running command python setup.py bdist_wheel
2023-09-09T23:02:03,055   Cython or numpy could not be imported, so cythonised calculation functions will not be built. pyknotid will use Python-only routines instead. These are slower, but will return the same result.
2023-09-09T23:02:03,055   To build the cython components, install cython and numpy and rebuild pyknotid.
2023-09-09T23:02:03,493   running bdist_wheel
2023-09-09T23:02:03,589   running build
2023-09-09T23:02:03,590   running build_py
2023-09-09T23:02:03,617   creating build
2023-09-09T23:02:03,618   creating build/lib
2023-09-09T23:02:03,618   creating build/lib/pyknotid
2023-09-09T23:02:03,620   copying pyknotid/visualise.py -> build/lib/pyknotid
2023-09-09T23:02:03,623   copying pyknotid/writhes.py -> build/lib/pyknotid
2023-09-09T23:02:03,625   copying pyknotid/visualcollection.py -> build/lib/pyknotid
2023-09-09T23:02:03,627   copying pyknotid/__init__.py -> build/lib/pyknotid
2023-09-09T23:02:03,628   copying pyknotid/virtualknot.py -> build/lib/pyknotid
2023-09-09T23:02:03,630   copying pyknotid/cython_utils.py -> build/lib/pyknotid
2023-09-09T23:02:03,631   copying pyknotid/io.py -> build/lib/pyknotid
2023-09-09T23:02:03,633   copying pyknotid/keith_planardiagram_jones.py -> build/lib/pyknotid
2023-09-09T23:02:03,635   copying pyknotid/invariants.py -> build/lib/pyknotid
2023-09-09T23:02:03,638   copying pyknotid/vassiliev.py -> build/lib/pyknotid
2023-09-09T23:02:03,640   copying pyknotid/utils.py -> build/lib/pyknotid
2023-09-09T23:02:03,642   copying pyknotid/hsluvcolormap.py -> build/lib/pyknotid
2023-09-09T23:02:03,644   creating build/lib/pyknotid/cli
2023-09-09T23:02:03,645   copying pyknotid/cli/__init__.py -> build/lib/pyknotid/cli
2023-09-09T23:02:03,646   copying pyknotid/cli/plot_knot.py -> build/lib/pyknotid/cli
2023-09-09T23:02:03,648   copying pyknotid/cli/analyse_knot_file.py -> build/lib/pyknotid/cli
2023-09-09T23:02:03,650   creating build/lib/pyknotid/catalogue
2023-09-09T23:02:03,651   copying pyknotid/catalogue/identify.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,654   copying pyknotid/catalogue/improve.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,656   copying pyknotid/catalogue/__init__.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,658   copying pyknotid/catalogue/converters.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,660   copying pyknotid/catalogue/test.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,662   copying pyknotid/catalogue/build.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,664   copying pyknotid/catalogue/database.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,666   copying pyknotid/catalogue/getdb.py -> build/lib/pyknotid/catalogue
2023-09-09T23:02:03,668   creating build/lib/pyknotid/simplify
2023-09-09T23:02:03,669   copying pyknotid/simplify/__init__.py -> build/lib/pyknotid/simplify
2023-09-09T23:02:03,671   copying pyknotid/simplify/octree.py -> build/lib/pyknotid/simplify
2023-09-09T23:02:03,674   creating build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,675   copying pyknotid/spacecurves/complexity_greg.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,677   copying pyknotid/spacecurves/complexity.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,679   copying pyknotid/spacecurves/link.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,681   copying pyknotid/spacecurves/spacecurve.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,685   copying pyknotid/spacecurves/__init__.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,690   copying pyknotid/spacecurves/helpers.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,694   copying pyknotid/spacecurves/rotation.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,696   copying pyknotid/spacecurves/setup.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,698   copying pyknotid/spacecurves/openknot.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,703   copying pyknotid/spacecurves/smooth.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,705   copying pyknotid/spacecurves/geometry.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,707   copying pyknotid/spacecurves/knot.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,712   copying pyknotid/spacecurves/periodic.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,721   copying pyknotid/spacecurves/periodiccell.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,732   copying pyknotid/spacecurves/periodicline.py -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:03,740   creating build/lib/pyknotid/make
2023-09-09T23:02:03,744   copying pyknotid/make/__init__.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,753   copying pyknotid/make/slipknot.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,761   copying pyknotid/make/experimental.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,768   copying pyknotid/make/periodic_knot.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,778   copying pyknotid/make/dennis_lemniscate.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,786   copying pyknotid/make/ideal.py -> build/lib/pyknotid/make
2023-09-09T23:02:03,796   copying pyknotid/make/named.py -> build/lib/pyknotid/make
2023-09-09T23:02:04,019   copying pyknotid/make/torus.py -> build/lib/pyknotid/make
2023-09-09T23:02:04,022   creating build/lib/pyknotid/representations
2023-09-09T23:02:04,023   copying pyknotid/representations/gausscode.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,025   copying pyknotid/representations/gaussdiagram.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,027   copying pyknotid/representations/__init__.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,029   copying pyknotid/representations/representation.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,031   copying pyknotid/representations/dtnotation.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,033   copying pyknotid/representations/planardiagram.py -> build/lib/pyknotid/representations
2023-09-09T23:02:04,035   creating build/lib/pyknotid/make/randomwalks
2023-09-09T23:02:04,036   copying pyknotid/make/randomwalks/__init__.py -> build/lib/pyknotid/make/randomwalks
2023-09-09T23:02:04,038   copying pyknotid/make/randomwalks/quaternionic.py -> build/lib/pyknotid/make/randomwalks
2023-09-09T23:02:04,047   copying pyknotid/cinvariants.pyx -> build/lib/pyknotid
2023-09-09T23:02:04,049   copying pyknotid/cwrithes.pyx -> build/lib/pyknotid
2023-09-09T23:02:04,057   copying pyknotid/simplify/coctree.pyx -> build/lib/pyknotid/simplify
2023-09-09T23:02:04,060   creating build/lib/pyknotid/templates
2023-09-09T23:02:04,061   copying pyknotid/templates/cell.pov -> build/lib/pyknotid/templates
2023-09-09T23:02:04,063   copying pyknotid/spacecurves/ccomplexity.pyx -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:04,068   copying pyknotid/spacecurves/chelpers.pyx -> build/lib/pyknotid/spacecurves
2023-09-09T23:02:04,104   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-09T23:02:04,105   !!

2023-09-09T23:02:04,106           ********************************************************************************
2023-09-09T23:02:04,107           Please avoid running ``setup.py`` directly.
2023-09-09T23:02:04,107           Instead, use pypa/build, pypa/installer or other
2023-09-09T23:02:04,108           standards-based tools.

2023-09-09T23:02:04,109           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-09T23:02:04,110           ********************************************************************************

2023-09-09T23:02:04,111   !!
2023-09-09T23:02:04,111     self.initialize_options()
2023-09-09T23:02:04,141   installing to build/bdist.linux-armv7l/wheel
2023-09-09T23:02:04,141   running install
2023-09-09T23:02:04,181   running install_lib
2023-09-09T23:02:04,214   creating build/bdist.linux-armv7l
2023-09-09T23:02:04,215   creating build/bdist.linux-armv7l/wheel
2023-09-09T23:02:04,217   creating build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,218   copying build/lib/pyknotid/visualise.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,221   copying build/lib/pyknotid/writhes.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,224   creating build/bdist.linux-armv7l/wheel/pyknotid/cli
2023-09-09T23:02:04,225   copying build/lib/pyknotid/cli/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/cli
2023-09-09T23:02:04,226   copying build/lib/pyknotid/cli/plot_knot.py -> build/bdist.linux-armv7l/wheel/pyknotid/cli
2023-09-09T23:02:04,228   copying build/lib/pyknotid/cli/analyse_knot_file.py -> build/bdist.linux-armv7l/wheel/pyknotid/cli
2023-09-09T23:02:04,230   copying build/lib/pyknotid/visualcollection.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,232   creating build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,233   copying build/lib/pyknotid/catalogue/identify.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,236   copying build/lib/pyknotid/catalogue/improve.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,239   copying build/lib/pyknotid/catalogue/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,241   copying build/lib/pyknotid/catalogue/converters.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,243   copying build/lib/pyknotid/catalogue/test.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,245   copying build/lib/pyknotid/catalogue/build.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,247   copying build/lib/pyknotid/catalogue/database.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,249   copying build/lib/pyknotid/catalogue/getdb.py -> build/bdist.linux-armv7l/wheel/pyknotid/catalogue
2023-09-09T23:02:04,251   copying build/lib/pyknotid/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,252   copying build/lib/pyknotid/cinvariants.pyx -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,255   creating build/bdist.linux-armv7l/wheel/pyknotid/simplify
2023-09-09T23:02:04,255   copying build/lib/pyknotid/simplify/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/simplify
2023-09-09T23:02:04,257   copying build/lib/pyknotid/simplify/coctree.pyx -> build/bdist.linux-armv7l/wheel/pyknotid/simplify
2023-09-09T23:02:04,259   copying build/lib/pyknotid/simplify/octree.py -> build/bdist.linux-armv7l/wheel/pyknotid/simplify
2023-09-09T23:02:04,262   copying build/lib/pyknotid/cwrithes.pyx -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,263   copying build/lib/pyknotid/virtualknot.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,265   creating build/bdist.linux-armv7l/wheel/pyknotid/templates
2023-09-09T23:02:04,266   copying build/lib/pyknotid/templates/cell.pov -> build/bdist.linux-armv7l/wheel/pyknotid/templates
2023-09-09T23:02:04,268   copying build/lib/pyknotid/cython_utils.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,269   copying build/lib/pyknotid/io.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,272   creating build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,272   copying build/lib/pyknotid/spacecurves/ccomplexity.pyx -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,275   copying build/lib/pyknotid/spacecurves/complexity_greg.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,276   copying build/lib/pyknotid/spacecurves/complexity.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,279   copying build/lib/pyknotid/spacecurves/link.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,281   copying build/lib/pyknotid/spacecurves/spacecurve.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,284   copying build/lib/pyknotid/spacecurves/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,285   copying build/lib/pyknotid/spacecurves/helpers.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,288   copying build/lib/pyknotid/spacecurves/rotation.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,289   copying build/lib/pyknotid/spacecurves/chelpers.pyx -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,291   copying build/lib/pyknotid/spacecurves/setup.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,293   copying build/lib/pyknotid/spacecurves/openknot.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,296   copying build/lib/pyknotid/spacecurves/smooth.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,298   copying build/lib/pyknotid/spacecurves/geometry.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,299   copying build/lib/pyknotid/spacecurves/knot.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,302   copying build/lib/pyknotid/spacecurves/periodic.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,305   copying build/lib/pyknotid/spacecurves/periodiccell.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,308   copying build/lib/pyknotid/spacecurves/periodicline.py -> build/bdist.linux-armv7l/wheel/pyknotid/spacecurves
2023-09-09T23:02:04,310   creating build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,311   copying build/lib/pyknotid/make/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,312   copying build/lib/pyknotid/make/slipknot.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,314   copying build/lib/pyknotid/make/experimental.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,316   copying build/lib/pyknotid/make/periodic_knot.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,318   creating build/bdist.linux-armv7l/wheel/pyknotid/make/randomwalks
2023-09-09T23:02:04,319   copying build/lib/pyknotid/make/randomwalks/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/make/randomwalks
2023-09-09T23:02:04,321   copying build/lib/pyknotid/make/randomwalks/quaternionic.py -> build/bdist.linux-armv7l/wheel/pyknotid/make/randomwalks
2023-09-09T23:02:04,323   copying build/lib/pyknotid/make/dennis_lemniscate.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,325   copying build/lib/pyknotid/make/ideal.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,327   copying build/lib/pyknotid/make/named.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,329   copying build/lib/pyknotid/make/torus.py -> build/bdist.linux-armv7l/wheel/pyknotid/make
2023-09-09T23:02:04,330   copying build/lib/pyknotid/keith_planardiagram_jones.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,333   copying build/lib/pyknotid/invariants.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,336   copying build/lib/pyknotid/vassiliev.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,337   copying build/lib/pyknotid/utils.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,340   creating build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,340   copying build/lib/pyknotid/representations/gausscode.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,343   copying build/lib/pyknotid/representations/gaussdiagram.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,344   copying build/lib/pyknotid/representations/__init__.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,346   copying build/lib/pyknotid/representations/representation.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,349   copying build/lib/pyknotid/representations/dtnotation.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,350   copying build/lib/pyknotid/representations/planardiagram.py -> build/bdist.linux-armv7l/wheel/pyknotid/representations
2023-09-09T23:02:04,353   copying build/lib/pyknotid/hsluvcolormap.py -> build/bdist.linux-armv7l/wheel/pyknotid
2023-09-09T23:02:04,355   running install_egg_info
2023-09-09T23:02:04,415   running egg_info
2023-09-09T23:02:04,442   writing pyknotid.egg-info/PKG-INFO
2023-09-09T23:02:04,445   writing dependency_links to pyknotid.egg-info/dependency_links.txt
2023-09-09T23:02:04,446   writing entry points to pyknotid.egg-info/entry_points.txt
2023-09-09T23:02:04,447   writing requirements to pyknotid.egg-info/requires.txt
2023-09-09T23:02:04,449   writing top-level names to pyknotid.egg-info/top_level.txt
2023-09-09T23:02:04,485   reading manifest file 'pyknotid.egg-info/SOURCES.txt'
2023-09-09T23:02:04,493   writing manifest file 'pyknotid.egg-info/SOURCES.txt'
2023-09-09T23:02:04,494   Copying pyknotid.egg-info to build/bdist.linux-armv7l/wheel/pyknotid-0.5.1-py3.11.egg-info
2023-09-09T23:02:04,505   running install_scripts
2023-09-09T23:02:04,519   creating build/bdist.linux-armv7l/wheel/pyknotid-0.5.1.dist-info/WHEEL
2023-09-09T23:02:04,521   creating '/tmp/pip-wheel-c837zbw5/pyknotid-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-09T23:02:04,523   adding 'pyknotid/__init__.py'
2023-09-09T23:02:04,525   adding 'pyknotid/cinvariants.pyx'
2023-09-09T23:02:04,527   adding 'pyknotid/cwrithes.pyx'
2023-09-09T23:02:04,528   adding 'pyknotid/cython_utils.py'
2023-09-09T23:02:04,529   adding 'pyknotid/hsluvcolormap.py'
2023-09-09T23:02:04,534   adding 'pyknotid/invariants.py'
2023-09-09T23:02:04,536   adding 'pyknotid/io.py'
2023-09-09T23:02:04,539   adding 'pyknotid/keith_planardiagram_jones.py'
2023-09-09T23:02:04,541   adding 'pyknotid/utils.py'
2023-09-09T23:02:04,542   adding 'pyknotid/vassiliev.py'
2023-09-09T23:02:04,543   adding 'pyknotid/virtualknot.py'
2023-09-09T23:02:04,545   adding 'pyknotid/visualcollection.py'
2023-09-09T23:02:04,549   adding 'pyknotid/visualise.py'
2023-09-09T23:02:04,551   adding 'pyknotid/writhes.py'
2023-09-09T23:02:04,554   adding 'pyknotid/catalogue/__init__.py'
2023-09-09T23:02:04,555   adding 'pyknotid/catalogue/build.py'
2023-09-09T23:02:04,557   adding 'pyknotid/catalogue/converters.py'
2023-09-09T23:02:04,559   adding 'pyknotid/catalogue/database.py'
2023-09-09T23:02:04,560   adding 'pyknotid/catalogue/getdb.py'
2023-09-09T23:02:04,562   adding 'pyknotid/catalogue/identify.py'
2023-09-09T23:02:04,564   adding 'pyknotid/catalogue/improve.py'
2023-09-09T23:02:04,565   adding 'pyknotid/catalogue/test.py'
2023-09-09T23:02:04,567   adding 'pyknotid/cli/__init__.py'
2023-09-09T23:02:04,568   adding 'pyknotid/cli/analyse_knot_file.py'
2023-09-09T23:02:04,570   adding 'pyknotid/cli/plot_knot.py'
2023-09-09T23:02:04,572   adding 'pyknotid/make/__init__.py'
2023-09-09T23:02:04,573   adding 'pyknotid/make/dennis_lemniscate.py'
2023-09-09T23:02:04,574   adding 'pyknotid/make/experimental.py'
2023-09-09T23:02:04,576   adding 'pyknotid/make/ideal.py'
2023-09-09T23:02:04,577   adding 'pyknotid/make/named.py'
2023-09-09T23:02:04,579   adding 'pyknotid/make/periodic_knot.py'
2023-09-09T23:02:04,580   adding 'pyknotid/make/slipknot.py'
2023-09-09T23:02:04,582   adding 'pyknotid/make/torus.py'
2023-09-09T23:02:04,583   adding 'pyknotid/make/randomwalks/__init__.py'
2023-09-09T23:02:04,585   adding 'pyknotid/make/randomwalks/quaternionic.py'
2023-09-09T23:02:04,587   adding 'pyknotid/representations/__init__.py'
2023-09-09T23:02:04,589   adding 'pyknotid/representations/dtnotation.py'
2023-09-09T23:02:04,591   adding 'pyknotid/representations/gausscode.py'
2023-09-09T23:02:04,593   adding 'pyknotid/representations/gaussdiagram.py'
2023-09-09T23:02:04,595   adding 'pyknotid/representations/planardiagram.py'
2023-09-09T23:02:04,598   adding 'pyknotid/representations/representation.py'
2023-09-09T23:02:04,600   adding 'pyknotid/simplify/__init__.py'
2023-09-09T23:02:04,602   adding 'pyknotid/simplify/coctree.pyx'
2023-09-09T23:02:04,605   adding 'pyknotid/simplify/octree.py'
2023-09-09T23:02:04,608   adding 'pyknotid/spacecurves/__init__.py'
2023-09-09T23:02:04,609   adding 'pyknotid/spacecurves/ccomplexity.pyx'
2023-09-09T23:02:04,611   adding 'pyknotid/spacecurves/chelpers.pyx'
2023-09-09T23:02:04,612   adding 'pyknotid/spacecurves/complexity.py'
2023-09-09T23:02:04,614   adding 'pyknotid/spacecurves/complexity_greg.py'
2023-09-09T23:02:04,616   adding 'pyknotid/spacecurves/geometry.py'
2023-09-09T23:02:04,617   adding 'pyknotid/spacecurves/helpers.py'
2023-09-09T23:02:04,620   adding 'pyknotid/spacecurves/knot.py'
2023-09-09T23:02:04,623   adding 'pyknotid/spacecurves/link.py'
2023-09-09T23:02:04,628   adding 'pyknotid/spacecurves/openknot.py'
2023-09-09T23:02:04,634   adding 'pyknotid/spacecurves/periodic.py'
2023-09-09T23:02:04,637   adding 'pyknotid/spacecurves/periodiccell.py'
2023-09-09T23:02:04,639   adding 'pyknotid/spacecurves/periodicline.py'
2023-09-09T23:02:04,640   adding 'pyknotid/spacecurves/rotation.py'
2023-09-09T23:02:04,642   adding 'pyknotid/spacecurves/setup.py'
2023-09-09T23:02:04,643   adding 'pyknotid/spacecurves/smooth.py'
2023-09-09T23:02:04,648   adding 'pyknotid/spacecurves/spacecurve.py'
2023-09-09T23:02:04,651   adding 'pyknotid/templates/cell.pov'
2023-09-09T23:02:04,653   adding 'pyknotid-0.5.1.dist-info/METADATA'
2023-09-09T23:02:04,654   adding 'pyknotid-0.5.1.dist-info/WHEEL'
2023-09-09T23:02:04,655   adding 'pyknotid-0.5.1.dist-info/entry_points.txt'
2023-09-09T23:02:04,656   adding 'pyknotid-0.5.1.dist-info/top_level.txt'
2023-09-09T23:02:04,657   adding 'pyknotid-0.5.1.dist-info/RECORD'
2023-09-09T23:02:04,660   removing build/bdist.linux-armv7l/wheel
2023-09-09T23:02:04,793   Building wheel for pyknotid (setup.py): finished with status 'done'
2023-09-09T23:02:04,798   Created wheel for pyknotid: filename=pyknotid-0.5.1-py3-none-any.whl size=150618 sha256=b770473166e4ec389e94f780580848b59ff293ca493fd487cad6f5381785cad5
2023-09-09T23:02:04,799   Stored in directory: /tmp/pip-ephem-wheel-cache-ecq_vala/wheels/9b/6c/29/8eff832a642f566054430ed7d0c0d7f80860f92b15846444d8
2023-09-09T23:02:04,814 Successfully built pyknotid
2023-09-09T23:02:04,824 Removed build tracker: '/tmp/pip-build-tracker-7xwh17ne'