2023-09-10T04:08:35,308 Created temporary directory: /tmp/pip-build-tracker-izevm9g_
2023-09-10T04:08:35,309 Initialized build tracking at /tmp/pip-build-tracker-izevm9g_
2023-09-10T04:08:35,309 Created build tracker: /tmp/pip-build-tracker-izevm9g_
2023-09-10T04:08:35,310 Entered build tracker: /tmp/pip-build-tracker-izevm9g_
2023-09-10T04:08:35,311 Created temporary directory: /tmp/pip-wheel-71ieu361
2023-09-10T04:08:35,314 Created temporary directory: /tmp/pip-ephem-wheel-cache-_1kim60v
2023-09-10T04:08:35,335 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-10T04:08:35,339 2 location(s) to search for versions of cpinsim:
2023-09-10T04:08:35,339 * https://pypi.org/simple/cpinsim/
2023-09-10T04:08:35,339 * https://www.piwheels.org/simple/cpinsim/
2023-09-10T04:08:35,340 Fetching project page and analyzing links: https://pypi.org/simple/cpinsim/
2023-09-10T04:08:35,340 Getting page https://pypi.org/simple/cpinsim/
2023-09-10T04:08:35,342 Found index url https://pypi.org/simple/
2023-09-10T04:08:35,555 Fetched page https://pypi.org/simple/cpinsim/ as application/vnd.pypi.simple.v1+json
2023-09-10T04:08:35,557   Found link https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.0
2023-09-10T04:08:35,558   Found link https://files.pythonhosted.org/packages/23/66/f6275a375684d95607ea4b0baf85ae0d29606cd4d7d9204d1baea4869a36/cpinsim-0.5.1.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.1
2023-09-10T04:08:35,558   Found link https://files.pythonhosted.org/packages/bd/f4/a13bff177795f5202dbb560e6102c8031b0110c8a7cf6eb51e153bd9d506/cpinsim-0.5.2.zip (from https://pypi.org/simple/cpinsim/), version: 0.5.2
2023-09-10T04:08:35,559 Fetching project page and analyzing links: https://www.piwheels.org/simple/cpinsim/
2023-09-10T04:08:35,560 Getting page https://www.piwheels.org/simple/cpinsim/
2023-09-10T04:08:35,561 Found index url https://www.piwheels.org/simple/
2023-09-10T04:08:36,807 Fetched page https://www.piwheels.org/simple/cpinsim/ as text/html
2023-09-10T04:08:36,810   Skipping link: No binaries permitted for cpinsim: https://www.piwheels.org/simple/cpinsim/cpinsim-0.5.2-py3-none-any.whl#sha256=8594f80d948f27fb0c301b1c14e28145a7a52de9e632c951679e735a353d3d53 (from https://www.piwheels.org/simple/cpinsim/)
2023-09-10T04:08:36,812 Skipping link: not a file: https://www.piwheels.org/simple/cpinsim/
2023-09-10T04:08:36,813 Skipping link: not a file: https://pypi.org/simple/cpinsim/
2023-09-10T04:08:36,848 Given no hashes to check 1 links for project 'cpinsim': discarding no candidates
2023-09-10T04:08:36,876 Collecting cpinsim==0.5.0
2023-09-10T04:08:36,880   Created temporary directory: /tmp/pip-unpack-2gpk3261
2023-09-10T04:08:37,115   Downloading cpinsim-0.5.0.zip (25 kB)
2023-09-10T04:08:37,156   Added cpinsim==0.5.0 from https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip to build tracker '/tmp/pip-build-tracker-izevm9g_'
2023-09-10T04:08:37,158   Running setup.py (path:/tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/setup.py) egg_info for package cpinsim
2023-09-10T04:08:37,159   Created temporary directory: /tmp/pip-pip-egg-info-nidrp4xu
2023-09-10T04:08:37,159   Preparing metadata (setup.py): started
2023-09-10T04:08:37,161   Running command python setup.py egg_info
2023-09-10T04:08:37,608   Traceback (most recent call last):
2023-09-10T04:08:37,609     File "<string>", line 2, in <module>
2023-09-10T04:08:37,609     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-10T04:08:37,610     File "/tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/setup.py", line 5, in <module>
2023-09-10T04:08:37,611       from cpinsim import __version__
2023-09-10T04:08:37,612     File "/tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/cpinsim/__init__.py", line 7, in <module>
2023-09-10T04:08:37,613       import cpinsim.protein_type as protein_type
2023-09-10T04:08:37,614     File "/tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/cpinsim/protein_type.py", line 5, in <module>
2023-09-10T04:08:37,616       from bitarray import bitarray
2023-09-10T04:08:37,616   ModuleNotFoundError: No module named 'bitarray'
2023-09-10T04:08:37,685   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-10T04:08:37,698   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-10T04:08:37,698   exec(compile('"'"''"'"''"'"'
2023-09-10T04:08:37,698   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-10T04:08:37,698   #
2023-09-10T04:08:37,698   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-10T04:08:37,698   #   import from `distutils.core` to work with newer packaging standards.
2023-09-10T04:08:37,698   # - It provides a clear error message when setuptools is not installed.
2023-09-10T04:08:37,698   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-10T04:08:37,698   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-10T04:08:37,698   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-10T04:08:37,698   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-10T04:08:37,698   import os, sys, tokenize
2023-09-10T04:08:37,698   
2023-09-10T04:08:37,698   try:
2023-09-10T04:08:37,698       import setuptools
2023-09-10T04:08:37,698   except ImportError as error:
2023-09-10T04:08:37,698       print(
2023-09-10T04:08:37,698           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-10T04:08:37,698           "the build environment.",
2023-09-10T04:08:37,698           file=sys.stderr,
2023-09-10T04:08:37,698       )
2023-09-10T04:08:37,698       sys.exit(1)
2023-09-10T04:08:37,698   
2023-09-10T04:08:37,698   __file__ = %r
2023-09-10T04:08:37,698   sys.argv[0] = __file__
2023-09-10T04:08:37,698   
2023-09-10T04:08:37,698   if os.path.exists(__file__):
2023-09-10T04:08:37,698       filename = __file__
2023-09-10T04:08:37,698       with tokenize.open(__file__) as f:
2023-09-10T04:08:37,698           setup_py_code = f.read()
2023-09-10T04:08:37,698   else:
2023-09-10T04:08:37,698       filename = "<auto-generated setuptools caller>"
2023-09-10T04:08:37,698       setup_py_code = "from setuptools import setup; setup()"
2023-09-10T04:08:37,698   
2023-09-10T04:08:37,698   exec(compile(setup_py_code, filename, "exec"))
2023-09-10T04:08:37,698   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-nidrp4xu[/]
2023-09-10T04:08:37,699   [bold magenta]cwd[/]: /tmp/pip-wheel-71ieu361/cpinsim_8e40f0754b8147c3943a6b8ee7731fb4/
2023-09-10T04:08:37,699   Preparing metadata (setup.py): finished with status 'error'
2023-09-10T04:08:37,701 ERROR: [present-rich] metadata generation failed
2023-09-10T04:08:37,706 Exception information:
2023-09-10T04:08:37,706 Traceback (most recent call last):
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-10T04:08:37,706     call_subprocess(
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-10T04:08:37,706     raise error
2023-09-10T04:08:37,706 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-10T04:08:37,706 
2023-09-10T04:08:37,706 The above exception was the direct cause of the following exception:
2023-09-10T04:08:37,706 
2023-09-10T04:08:37,706 Traceback (most recent call last):
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-10T04:08:37,706     status = run_func(*args)
2023-09-10T04:08:37,706              ^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-10T04:08:37,706     return func(self, options, args)
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-10T04:08:37,706     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-10T04:08:37,706                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-10T04:08:37,706     result = self._result = resolver.resolve(
2023-09-10T04:08:37,706                             ^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-10T04:08:37,706     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-10T04:08:37,706             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-10T04:08:37,706     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-10T04:08:37,706     if not criterion.candidates:
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-10T04:08:37,706     return bool(self._sequence)
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-10T04:08:37,706     return any(self)
2023-09-10T04:08:37,706            ^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-10T04:08:37,706     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-10T04:08:37,706     candidate = func()
2023-09-10T04:08:37,706                 ^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-10T04:08:37,706     self._link_candidate_cache[link] = LinkCandidate(
2023-09-10T04:08:37,706                                        ^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-10T04:08:37,706     super().__init__(
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-10T04:08:37,706     self.dist = self._prepare()
2023-09-10T04:08:37,706                 ^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-10T04:08:37,706     dist = self._prepare_distribution()
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-10T04:08:37,706     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-10T04:08:37,706     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-10T04:08:37,706     dist = _get_prepared_distribution(
2023-09-10T04:08:37,706            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-10T04:08:37,706     abstract_dist.prepare_distribution_metadata(
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-10T04:08:37,706     self.req.prepare_metadata()
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-10T04:08:37,706     self.metadata_directory = generate_metadata_legacy(
2023-09-10T04:08:37,706                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T04:08:37,706   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-10T04:08:37,706     raise MetadataGenerationFailed(package_details=details) from error
2023-09-10T04:08:37,706 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-10T04:08:37,719 Removed cpinsim==0.5.0 from https://files.pythonhosted.org/packages/f5/51/2fe29ce06898393129f52520fb6ff3dcb7e68daa9855880fb10f484b121e/cpinsim-0.5.0.zip from build tracker '/tmp/pip-build-tracker-izevm9g_'
2023-09-10T04:08:37,720 Removed build tracker: '/tmp/pip-build-tracker-izevm9g_'