2023-09-10T04:16:21,404 Created temporary directory: /tmp/pip-build-tracker-z8z1nyqb 2023-09-10T04:16:21,406 Initialized build tracking at /tmp/pip-build-tracker-z8z1nyqb 2023-09-10T04:16:21,406 Created build tracker: /tmp/pip-build-tracker-z8z1nyqb 2023-09-10T04:16:21,407 Entered build tracker: /tmp/pip-build-tracker-z8z1nyqb 2023-09-10T04:16:21,408 Created temporary directory: /tmp/pip-wheel-2s_8ptq0 2023-09-10T04:16:21,411 Created temporary directory: /tmp/pip-ephem-wheel-cache-_xyi0qjt 2023-09-10T04:16:21,433 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T04:16:21,436 2 location(s) to search for versions of mikado: 2023-09-10T04:16:21,436 * https://pypi.org/simple/mikado/ 2023-09-10T04:16:21,436 * https://www.piwheels.org/simple/mikado/ 2023-09-10T04:16:21,437 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2023-09-10T04:16:21,438 Getting page https://pypi.org/simple/mikado/ 2023-09-10T04:16:21,440 Found index url https://pypi.org/simple/ 2023-09-10T04:16:21,697 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2023-09-10T04:16:21,703 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2023-09-10T04:16:21,704 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2023-09-10T04:16:21,704 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2023-09-10T04:16:21,705 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2023-09-10T04:16:21,706 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2023-09-10T04:16:21,706 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2023-09-10T04:16:21,707 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2023-09-10T04:16:21,708 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2023-09-10T04:16:21,709 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2023-09-10T04:16:21,709 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2023-09-10T04:16:21,710 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2023-09-10T04:16:21,711 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2023-09-10T04:16:21,712 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2023-09-10T04:16:21,713 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2023-09-10T04:16:21,714 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2023-09-10T04:16:21,715 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2023-09-10T04:16:21,716 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2023-09-10T04:16:21,717 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2023-09-10T04:16:21,718 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2023-09-10T04:16:21,719 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2023-09-10T04:16:21,720 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2023-09-10T04:16:21,720 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2023-09-10T04:16:21,721 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2023-09-10T04:16:21,722 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2023-09-10T04:16:21,723 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2023-09-10T04:16:21,723 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2023-09-10T04:16:21,724 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2023-09-10T04:16:21,725 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2023-09-10T04:16:21,726 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2023-09-10T04:16:21,726 Getting page https://www.piwheels.org/simple/mikado/ 2023-09-10T04:16:21,728 Found index url https://www.piwheels.org/simple/ 2023-09-10T04:16:29,735 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2023-09-10T04:16:29,797 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,798 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,799 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,800 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,801 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,801 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,802 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,803 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,804 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,804 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,805 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,806 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,807 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,808 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,809 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,810 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,811 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,812 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,812 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,813 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,814 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,815 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,815 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,816 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,817 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,818 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,819 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,820 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T04:16:29,820 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2023-09-10T04:16:29,821 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,858 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,859 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,860 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,861 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,864 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,865 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,866 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,867 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,868 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,868 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,869 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,870 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,870 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,871 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,871 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,872 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,872 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,873 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,874 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,874 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,875 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,876 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,877 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,877 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,878 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,878 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,879 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,879 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,880 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,880 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,881 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,881 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,882 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,882 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,883 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,884 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,884 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,885 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,885 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,886 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,886 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T04:16:29,887 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2023-09-10T04:16:29,887 Skipping link: not a file: https://pypi.org/simple/mikado/ 2023-09-10T04:16:29,909 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2023-09-10T04:16:29,927 Collecting mikado==1.1 2023-09-10T04:16:29,929 Created temporary directory: /tmp/pip-unpack-tyta796n 2023-09-10T04:16:30,146 Downloading Mikado-1.1.tar.gz (17.5 MB) 2023-09-10T04:16:37,619 Added mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-z8z1nyqb' 2023-09-10T04:16:37,621 Running setup.py (path:/tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4/setup.py) egg_info for package mikado 2023-09-10T04:16:37,622 Created temporary directory: /tmp/pip-pip-egg-info-gf28n2ty 2023-09-10T04:16:37,623 Preparing metadata (setup.py): started 2023-09-10T04:16:37,624 Running command python setup.py egg_info 2023-09-10T04:16:39,842 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4/Mikado/scales/contrast.pxd 2023-09-10T04:16:39,842 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T04:16:40,671 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4/Mikado/scales/f1.pxd 2023-09-10T04:16:40,672 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T04:16:40,754 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4/Mikado/utilities/intervaltree.pyx 2023-09-10T04:16:40,755 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T04:16:41,814 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4/Mikado/utilities/overlap.pxd 2023-09-10T04:16:41,814 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T04:16:41,940 Compiling Mikado/utilities/overlap.pyx because it changed. 2023-09-10T04:16:41,941 Compiling Mikado/scales/f1.pyx because it changed. 2023-09-10T04:16:41,941 Compiling Mikado/scales/contrast.pyx because it changed. 2023-09-10T04:16:41,942 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2023-09-10T04:16:41,942 [1/4] Cythonizing Mikado/scales/contrast.pyx 2023-09-10T04:16:41,942 [2/4] Cythonizing Mikado/scales/f1.pyx 2023-09-10T04:16:41,943 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2023-09-10T04:16:41,943 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2023-09-10T04:16:42,420 running egg_info 2023-09-10T04:16:42,421 creating /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info 2023-09-10T04:16:42,446 writing /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/PKG-INFO 2023-09-10T04:16:42,451 writing dependency_links to /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/dependency_links.txt 2023-09-10T04:16:42,452 writing entry points to /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/entry_points.txt 2023-09-10T04:16:42,455 writing requirements to /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/requires.txt 2023-09-10T04:16:42,456 writing top-level names to /tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/top_level.txt 2023-09-10T04:16:42,458 writing manifest file '/tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/SOURCES.txt' 2023-09-10T04:16:42,596 reading manifest file '/tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/SOURCES.txt' 2023-09-10T04:16:42,597 reading manifest template 'MANIFEST.in' 2023-09-10T04:16:43,260 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T04:16:43,261 adding license file 'AUTHORS' 2023-09-10T04:16:43,284 writing manifest file '/tmp/pip-pip-egg-info-gf28n2ty/Mikado.egg-info/SOURCES.txt' 2023-09-10T04:16:43,572 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T04:16:43,576 Source in /tmp/pip-wheel-2s_8ptq0/mikado_181ab2d6943140e998453df5311a8fc4 has version 1.1, which satisfies requirement mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz 2023-09-10T04:16:43,577 Removed mikado==1.1 from https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-z8z1nyqb' 2023-09-10T04:16:43,582 Created temporary directory: /tmp/pip-unpack-lhdkzqfx 2023-09-10T04:16:43,583 Created temporary directory: /tmp/pip-unpack-ym5n1p34 2023-09-10T04:16:43,619 Building wheels for collected packages: mikado 2023-09-10T04:16:43,623 Created temporary directory: /tmp/pip-wheel-hwqawdlh 2023-09-10T04:16:43,624 Building wheel for mikado (setup.py): started 2023-09-10T04:16:43,625 Destination directory: /tmp/pip-wheel-hwqawdlh 2023-09-10T04:16:43,626 Running command python setup.py bdist_wheel 2023-09-10T04:16:45,130 running bdist_wheel 2023-09-10T04:16:45,227 running build 2023-09-10T04:16:45,227 running build_py 2023-09-10T04:16:45,253 creating build/lib.linux-armv7l-cpython-311 2023-09-10T04:16:45,254 creating build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T04:16:45,255 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T04:16:45,257 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T04:16:45,259 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T04:16:45,261 creating build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,262 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,265 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,268 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,270 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,272 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,274 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,276 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,279 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,281 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T04:16:45,285 creating build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T04:16:45,286 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T04:16:45,288 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T04:16:45,290 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T04:16:45,292 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T04:16:45,295 creating build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T04:16:45,296 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T04:16:45,298 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T04:16:45,300 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T04:16:45,304 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:45,304 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:45,307 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:45,308 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:45,312 creating build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:45,312 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:45,315 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:45,317 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:45,319 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T04:16:45,320 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T04:16:45,322 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T04:16:45,324 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T04:16:45,329 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T04:16:45,331 creating build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:45,332 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:45,336 creating build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,337 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,339 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,341 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,343 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,346 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,348 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,350 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,353 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,355 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,357 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,359 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,361 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,363 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,365 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,368 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,370 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,372 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,375 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,377 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,380 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,381 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,384 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,386 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,389 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:45,391 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,392 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,394 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,395 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,398 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,400 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,402 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,404 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T04:16:45,407 creating build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,408 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,410 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,412 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,415 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,418 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,420 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:45,423 creating build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,424 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,426 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,428 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,430 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,432 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,434 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,437 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T04:16:45,439 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T04:16:45,440 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T04:16:45,442 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T04:16:45,444 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T04:16:45,446 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T04:16:45,449 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,450 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,451 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,454 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,456 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,459 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T04:16:45,462 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,463 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,466 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,468 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,470 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,472 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,474 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,476 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,478 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,480 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T04:16:45,482 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,483 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,485 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,488 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,490 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,492 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,493 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,496 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T04:16:45,497 running egg_info 2023-09-10T04:16:45,552 writing Mikado.egg-info/PKG-INFO 2023-09-10T04:16:45,556 writing dependency_links to Mikado.egg-info/dependency_links.txt 2023-09-10T04:16:45,557 writing entry points to Mikado.egg-info/entry_points.txt 2023-09-10T04:16:45,560 writing requirements to Mikado.egg-info/requires.txt 2023-09-10T04:16:45,561 writing top-level names to Mikado.egg-info/top_level.txt 2023-09-10T04:16:45,597 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T04:16:45,614 reading manifest template 'MANIFEST.in' 2023-09-10T04:16:46,273 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T04:16:46,274 adding license file 'AUTHORS' 2023-09-10T04:16:46,309 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T04:16:46,336 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2023-09-10T04:16:46,336 !! 2023-09-10T04:16:46,337 ******************************************************************************** 2023-09-10T04:16:46,338 ############################ 2023-09-10T04:16:46,338 # Package would be ignored # 2023-09-10T04:16:46,339 ############################ 2023-09-10T04:16:46,339 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2023-09-10T04:16:46,340 but it is absent from setuptools' `packages` configuration. 2023-09-10T04:16:46,341 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T04:16:46,342 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2023-09-10T04:16:46,342 to the `packages` configuration field. 2023-09-10T04:16:46,343 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T04:16:46,344 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T04:16:46,345 instead of `find_packages(...)`/`find:`). 2023-09-10T04:16:46,346 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T04:16:46,347 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T04:16:46,348 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2023-09-10T04:16:46,348 already explicitly excluding 'Mikado.configuration.scoring_files' via 2023-09-10T04:16:46,349 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T04:16:46,349 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T04:16:46,350 combination with a more fine grained `package-data` configuration. 2023-09-10T04:16:46,352 You can read more about "package data files" on setuptools documentation page: 2023-09-10T04:16:46,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T04:16:46,354 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T04:16:46,355 even if it does not contain any `.py` files. 2023-09-10T04:16:46,355 On the other hand, currently there is no concept of package data 2023-09-10T04:16:46,356 directory, all directories are treated like packages. 2023-09-10T04:16:46,356 ******************************************************************************** 2023-09-10T04:16:46,357 !! 2023-09-10T04:16:46,358 check.warn(importable) 2023-09-10T04:16:46,358 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2023-09-10T04:16:46,359 !! 2023-09-10T04:16:46,359 ******************************************************************************** 2023-09-10T04:16:46,360 ############################ 2023-09-10T04:16:46,360 # Package would be ignored # 2023-09-10T04:16:46,361 ############################ 2023-09-10T04:16:46,361 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2023-09-10T04:16:46,361 but it is absent from setuptools' `packages` configuration. 2023-09-10T04:16:46,362 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T04:16:46,363 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2023-09-10T04:16:46,363 to the `packages` configuration field. 2023-09-10T04:16:46,364 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T04:16:46,364 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T04:16:46,365 instead of `find_packages(...)`/`find:`). 2023-09-10T04:16:46,366 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T04:16:46,367 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T04:16:46,368 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2023-09-10T04:16:46,368 already explicitly excluding 'Mikado.tests.__pycache__' via 2023-09-10T04:16:46,369 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T04:16:46,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T04:16:46,370 combination with a more fine grained `package-data` configuration. 2023-09-10T04:16:46,371 You can read more about "package data files" on setuptools documentation page: 2023-09-10T04:16:46,371 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T04:16:46,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T04:16:46,373 even if it does not contain any `.py` files. 2023-09-10T04:16:46,374 On the other hand, currently there is no concept of package data 2023-09-10T04:16:46,374 directory, all directories are treated like packages. 2023-09-10T04:16:46,375 ******************************************************************************** 2023-09-10T04:16:46,376 !! 2023-09-10T04:16:46,376 check.warn(importable) 2023-09-10T04:16:46,377 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2023-09-10T04:16:46,378 !! 2023-09-10T04:16:46,378 ******************************************************************************** 2023-09-10T04:16:46,379 ############################ 2023-09-10T04:16:46,380 # Package would be ignored # 2023-09-10T04:16:46,380 ############################ 2023-09-10T04:16:46,381 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2023-09-10T04:16:46,381 but it is absent from setuptools' `packages` configuration. 2023-09-10T04:16:46,382 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T04:16:46,383 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2023-09-10T04:16:46,383 to the `packages` configuration field. 2023-09-10T04:16:46,384 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T04:16:46,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T04:16:46,385 instead of `find_packages(...)`/`find:`). 2023-09-10T04:16:46,386 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T04:16:46,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T04:16:46,388 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2023-09-10T04:16:46,388 already explicitly excluding 'Mikado.tests.fusion_test' via 2023-09-10T04:16:46,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T04:16:46,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T04:16:46,389 combination with a more fine grained `package-data` configuration. 2023-09-10T04:16:46,390 You can read more about "package data files" on setuptools documentation page: 2023-09-10T04:16:46,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T04:16:46,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T04:16:46,393 even if it does not contain any `.py` files. 2023-09-10T04:16:46,394 On the other hand, currently there is no concept of package data 2023-09-10T04:16:46,394 directory, all directories are treated like packages. 2023-09-10T04:16:46,395 ******************************************************************************** 2023-09-10T04:16:46,396 !! 2023-09-10T04:16:46,396 check.warn(importable) 2023-09-10T04:16:46,397 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:46,398 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:46,398 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:46,399 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T04:16:46,399 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,400 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,400 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,401 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,402 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,402 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,403 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,403 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,404 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,404 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T04:16:46,405 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,414 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,416 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,423 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,424 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,426 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:46,428 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:46,430 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:46,431 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:46,434 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T04:16:46,437 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,559 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,561 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,564 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,566 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,569 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,574 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,596 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,622 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,626 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,628 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,630 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,632 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,635 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,638 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,640 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,643 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,645 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T04:16:46,750 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,751 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,753 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,755 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,757 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,761 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,764 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,767 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,769 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,772 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,774 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,777 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,781 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,785 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,787 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,790 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,793 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,795 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,797 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,799 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,801 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,803 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,806 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,808 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,810 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,812 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,815 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,817 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,819 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,822 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,824 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,827 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,829 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,831 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,833 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,835 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,837 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,839 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,841 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,843 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,845 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,847 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,850 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,852 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,854 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,856 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,859 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,861 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,863 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,865 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,867 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,869 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,872 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,874 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,877 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,880 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,882 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,885 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,889 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,892 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,894 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,897 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,899 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,902 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,904 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,907 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,910 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,912 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,916 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,919 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,922 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,925 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,928 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,930 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,933 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,935 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T04:16:46,937 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T04:16:46,938 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T04:16:46,940 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T04:16:46,942 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T04:16:46,944 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,958 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,959 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,962 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,968 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,969 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:46,979 running build_ext 2023-09-10T04:16:46,985 building 'Mikado.utilities.overlap' extension 2023-09-10T04:16:46,986 creating build/temp.linux-armv7l-cpython-311 2023-09-10T04:16:46,987 creating build/temp.linux-armv7l-cpython-311/Mikado 2023-09-10T04:16:46,987 creating build/temp.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T04:16:46,988 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o 2023-09-10T04:16:51,010 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so 2023-09-10T04:16:51,114 building 'Mikado.scales.f1' extension 2023-09-10T04:16:51,115 creating build/temp.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T04:16:51,116 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o 2023-09-10T04:16:54,472 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so 2023-09-10T04:16:54,573 building 'Mikado.scales.contrast' extension 2023-09-10T04:16:54,574 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o 2023-09-10T04:17:07,599 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so 2023-09-10T04:17:07,715 building 'Mikado.utilities.intervaltree' extension 2023-09-10T04:17:07,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o 2023-09-10T04:17:28,897 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so 2023-09-10T04:17:29,022 running build_scripts 2023-09-10T04:17:29,023 creating build/scripts-3.11 2023-09-10T04:17:29,024 copying and adjusting util/align_collect.py -> build/scripts-3.11 2023-09-10T04:17:29,026 copying and adjusting util/grep.py -> build/scripts-3.11 2023-09-10T04:17:29,028 copying and adjusting util/remove_utrs.py -> build/scripts-3.11 2023-09-10T04:17:29,029 copying and adjusting util/asm_collect.py -> build/scripts-3.11 2023-09-10T04:17:29,031 copying and adjusting util/trim_long_introns.py -> build/scripts-3.11 2023-09-10T04:17:29,033 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.11 2023-09-10T04:17:29,035 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.11 2023-09-10T04:17:29,036 copying util/tease_maker_apart.py -> build/scripts-3.11 2023-09-10T04:17:29,038 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.11 2023-09-10T04:17:29,040 copying and adjusting util/remove_from_embl.py -> build/scripts-3.11 2023-09-10T04:17:29,041 copying and adjusting util/self_training.py -> build/scripts-3.11 2023-09-10T04:17:29,044 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.11 2023-09-10T04:17:29,045 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.11 2023-09-10T04:17:29,047 copying and adjusting util/create_model.py -> build/scripts-3.11 2023-09-10T04:17:29,049 copying and adjusting util/calculate_distances.py -> build/scripts-3.11 2023-09-10T04:17:29,051 copying and adjusting util/split_fasta.py -> build/scripts-3.11 2023-09-10T04:17:29,052 copying and adjusting util/analyse_metrics.py -> build/scripts-3.11 2023-09-10T04:17:29,054 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.11 2023-09-10T04:17:29,056 copying and adjusting util/bam2gtf.py -> build/scripts-3.11 2023-09-10T04:17:29,058 copying and adjusting util/class_run.py -> build/scripts-3.11 2023-09-10T04:17:29,059 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.11 2023-09-10T04:17:29,060 changing mode of build/scripts-3.11/align_collect.py from 644 to 755 2023-09-10T04:17:29,061 changing mode of build/scripts-3.11/grep.py from 644 to 755 2023-09-10T04:17:29,061 changing mode of build/scripts-3.11/remove_utrs.py from 644 to 755 2023-09-10T04:17:29,062 changing mode of build/scripts-3.11/asm_collect.py from 644 to 755 2023-09-10T04:17:29,062 changing mode of build/scripts-3.11/trim_long_introns.py from 644 to 755 2023-09-10T04:17:29,063 changing mode of build/scripts-3.11/merge_junction_bed12.py from 644 to 755 2023-09-10T04:17:29,063 changing mode of build/scripts-3.11/add_transcript_feature_to_gtf.py from 644 to 755 2023-09-10T04:17:29,064 changing mode of build/scripts-3.11/tease_maker_apart.py from 644 to 755 2023-09-10T04:17:29,064 changing mode of build/scripts-3.11/gffjunc_to_bed12.py from 644 to 755 2023-09-10T04:17:29,065 changing mode of build/scripts-3.11/remove_from_embl.py from 644 to 755 2023-09-10T04:17:29,065 changing mode of build/scripts-3.11/self_training.py from 644 to 755 2023-09-10T04:17:29,066 changing mode of build/scripts-3.11/convert_cdna_match_gff3.py from 644 to 755 2023-09-10T04:17:29,066 changing mode of build/scripts-3.11/getFastaFromIds.py from 644 to 755 2023-09-10T04:17:29,067 changing mode of build/scripts-3.11/create_model.py from 644 to 755 2023-09-10T04:17:29,067 changing mode of build/scripts-3.11/calculate_distances.py from 644 to 755 2023-09-10T04:17:29,068 changing mode of build/scripts-3.11/split_fasta.py from 644 to 755 2023-09-10T04:17:29,069 changing mode of build/scripts-3.11/analyse_metrics.py from 644 to 755 2023-09-10T04:17:29,069 changing mode of build/scripts-3.11/extract_promoter_regions.py from 644 to 755 2023-09-10T04:17:29,070 changing mode of build/scripts-3.11/bam2gtf.py from 644 to 755 2023-09-10T04:17:29,070 changing mode of build/scripts-3.11/class_run.py from 644 to 755 2023-09-10T04:17:29,071 changing mode of build/scripts-3.11/sanitize_blast_db.py from 644 to 755 2023-09-10T04:17:29,092 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-10T04:17:29,093 !! 2023-09-10T04:17:29,094 ******************************************************************************** 2023-09-10T04:17:29,094 Please avoid running ``setup.py`` directly. 2023-09-10T04:17:29,095 Instead, use pypa/build, pypa/installer or other 2023-09-10T04:17:29,095 standards-based tools. 2023-09-10T04:17:29,097 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-10T04:17:29,097 ******************************************************************************** 2023-09-10T04:17:29,098 !! 2023-09-10T04:17:29,099 self.initialize_options() 2023-09-10T04:17:29,117 installing to build/bdist.linux-armv7l/wheel 2023-09-10T04:17:29,118 running install 2023-09-10T04:17:29,141 running install_lib 2023-09-10T04:17:29,165 creating build/bdist.linux-armv7l 2023-09-10T04:17:29,165 creating build/bdist.linux-armv7l/wheel 2023-09-10T04:17:29,167 creating build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T04:17:29,168 copying build/lib.linux-armv7l-cpython-311/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T04:17:29,170 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,172 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,175 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,178 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,180 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,182 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,184 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,186 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,189 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,192 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T04:17:29,195 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T04:17:29,196 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T04:17:29,198 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T04:17:29,200 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T04:17:29,203 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T04:17:29,205 copying build/lib.linux-armv7l-cpython-311/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T04:17:29,207 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T04:17:29,208 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T04:17:29,211 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T04:17:29,213 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T04:17:29,217 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,218 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,221 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,223 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,225 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,226 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,228 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,230 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,232 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,234 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,236 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,238 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,240 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,242 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T04:17:29,244 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,246 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,249 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,251 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T04:17:29,254 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,255 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,257 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,266 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,269 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,293 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,301 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,305 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,326 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,330 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,333 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T04:17:29,337 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T04:17:29,339 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T04:17:29,345 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T04:17:29,351 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T04:17:29,357 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,358 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,361 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,364 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,367 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,370 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T04:17:29,373 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T04:17:29,376 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,377 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,380 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,383 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,385 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,388 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,391 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T04:17:29,394 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,395 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,505 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,507 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,510 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,512 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,515 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,636 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,637 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,640 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,642 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,645 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,647 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,650 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,652 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,655 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,658 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,660 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,662 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,665 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,667 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,670 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,673 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,675 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,678 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,680 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,683 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,685 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,687 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,690 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,692 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,694 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,697 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,700 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,703 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,705 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,708 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,710 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,713 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,715 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,717 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,720 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,721 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,723 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,725 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,727 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,730 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,731 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,733 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,735 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,737 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,740 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,743 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,744 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,747 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,750 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,752 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,755 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,757 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,759 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,762 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,764 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,767 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,770 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,772 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,774 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,776 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,779 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,782 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,784 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,786 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,789 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,791 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,793 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,796 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,798 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,801 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,804 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,806 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,808 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,810 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,813 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,816 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T04:17:29,817 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,819 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,821 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,824 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,826 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,829 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,831 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,833 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,836 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,838 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,840 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,842 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,845 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,848 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,851 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T04:17:29,852 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T04:17:29,854 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T04:17:29,856 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T04:17:29,858 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,861 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,863 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,865 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,867 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,870 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,872 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,879 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,882 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,886 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,887 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,890 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,893 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,894 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,897 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,899 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,918 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,920 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,922 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,924 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,926 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,928 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T04:17:29,964 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:29,965 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:29,968 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:29,970 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:29,973 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:29,976 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,978 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,981 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,984 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,986 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,988 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,991 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,993 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,996 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:29,998 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T04:17:30,000 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:30,003 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:30,005 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T04:17:30,008 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,009 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,011 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,013 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,015 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,018 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,025 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,027 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,029 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,040 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,043 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,049 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,051 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,063 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,065 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T04:17:30,068 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,069 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,072 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,074 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,076 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,079 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,081 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,083 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T04:17:30,086 copying build/lib.linux-armv7l-cpython-311/Mikado/version.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T04:17:30,088 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T04:17:30,089 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T04:17:30,091 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T04:17:30,093 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T04:17:30,096 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,097 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,099 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,102 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,104 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,106 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,108 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,111 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T04:17:30,113 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T04:17:30,115 running install_egg_info 2023-09-10T04:17:30,146 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.1-py3.11.egg-info 2023-09-10T04:17:30,161 running install_scripts 2023-09-10T04:17:30,162 creating build/bdist.linux-armv7l/wheel/Mikado-1.1.data 2023-09-10T04:17:30,162 creating build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,163 copying build/scripts-3.11/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,165 copying build/scripts-3.11/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,167 copying build/scripts-3.11/remove_utrs.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,169 copying build/scripts-3.11/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,171 copying build/scripts-3.11/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,174 copying build/scripts-3.11/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,176 copying build/scripts-3.11/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,178 copying build/scripts-3.11/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,180 copying build/scripts-3.11/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,182 copying build/scripts-3.11/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,184 copying build/scripts-3.11/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,187 copying build/scripts-3.11/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,188 copying build/scripts-3.11/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,190 copying build/scripts-3.11/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,192 copying build/scripts-3.11/calculate_distances.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,195 copying build/scripts-3.11/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,196 copying build/scripts-3.11/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,198 copying build/scripts-3.11/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,200 copying build/scripts-3.11/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,202 copying build/scripts-3.11/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,204 copying build/scripts-3.11/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts 2023-09-10T04:17:30,206 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/align_collect.py to 755 2023-09-10T04:17:30,206 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/grep.py to 755 2023-09-10T04:17:30,207 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/remove_utrs.py to 755 2023-09-10T04:17:30,207 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/asm_collect.py to 755 2023-09-10T04:17:30,208 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/trim_long_introns.py to 755 2023-09-10T04:17:30,208 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/merge_junction_bed12.py to 755 2023-09-10T04:17:30,209 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/add_transcript_feature_to_gtf.py to 755 2023-09-10T04:17:30,209 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/tease_maker_apart.py to 755 2023-09-10T04:17:30,210 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/gffjunc_to_bed12.py to 755 2023-09-10T04:17:30,210 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/remove_from_embl.py to 755 2023-09-10T04:17:30,211 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/self_training.py to 755 2023-09-10T04:17:30,212 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/convert_cdna_match_gff3.py to 755 2023-09-10T04:17:30,212 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/getFastaFromIds.py to 755 2023-09-10T04:17:30,213 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/create_model.py to 755 2023-09-10T04:17:30,214 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/calculate_distances.py to 755 2023-09-10T04:17:30,214 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/split_fasta.py to 755 2023-09-10T04:17:30,215 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/analyse_metrics.py to 755 2023-09-10T04:17:30,216 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/extract_promoter_regions.py to 755 2023-09-10T04:17:30,216 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/bam2gtf.py to 755 2023-09-10T04:17:30,217 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/class_run.py to 755 2023-09-10T04:17:30,218 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.1.data/scripts/sanitize_blast_db.py to 755 2023-09-10T04:17:30,310 creating build/bdist.linux-armv7l/wheel/Mikado-1.1.dist-info/WHEEL 2023-09-10T04:17:30,313 creating '/tmp/pip-wheel-hwqawdlh/Mikado-1.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-10T04:17:30,316 adding 'Mikado/__init__.py' 2023-09-10T04:17:30,317 adding 'Mikado/exceptions.py' 2023-09-10T04:17:30,318 adding 'Mikado/version.py' 2023-09-10T04:17:30,320 adding 'Mikado/configuration/__init__.py' 2023-09-10T04:17:30,324 adding 'Mikado/configuration/configuration_blueprint.json' 2023-09-10T04:17:30,327 adding 'Mikado/configuration/configurator.py' 2023-09-10T04:17:30,329 adding 'Mikado/configuration/daijin_configurator.py' 2023-09-10T04:17:30,331 adding 'Mikado/configuration/daijin_schema.json' 2023-09-10T04:17:30,332 adding 'Mikado/configuration/requirements_blueprint.json' 2023-09-10T04:17:30,333 adding 'Mikado/configuration/scoring_blueprint.json' 2023-09-10T04:17:30,335 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2023-09-10T04:17:30,336 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2023-09-10T04:17:30,337 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2023-09-10T04:17:30,339 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2023-09-10T04:17:30,340 adding 'Mikado/configuration/scoring_files/human.yaml' 2023-09-10T04:17:30,341 adding 'Mikado/configuration/scoring_files/insects.yaml' 2023-09-10T04:17:30,343 adding 'Mikado/configuration/scoring_files/plants.yaml' 2023-09-10T04:17:30,344 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2023-09-10T04:17:30,345 adding 'Mikado/configuration/scoring_files/worm.yaml' 2023-09-10T04:17:30,349 adding 'Mikado/daijin/__init__.py' 2023-09-10T04:17:30,350 adding 'Mikado/daijin/example_config.yaml' 2023-09-10T04:17:30,351 adding 'Mikado/daijin/hpc.json' 2023-09-10T04:17:30,352 adding 'Mikado/daijin/hpc.yaml' 2023-09-10T04:17:30,354 adding 'Mikado/daijin/mikado.snakefile' 2023-09-10T04:17:30,358 adding 'Mikado/daijin/tr.snakefile' 2023-09-10T04:17:30,360 adding 'Mikado/loci/__init__.py' 2023-09-10T04:17:30,367 adding 'Mikado/loci/abstractlocus.py' 2023-09-10T04:17:30,368 adding 'Mikado/loci/excluded.py' 2023-09-10T04:17:30,372 adding 'Mikado/loci/locus.py' 2023-09-10T04:17:30,374 adding 'Mikado/loci/monosublocus.py' 2023-09-10T04:17:30,376 adding 'Mikado/loci/monosublocusholder.py' 2023-09-10T04:17:30,378 adding 'Mikado/loci/reference_gene.py' 2023-09-10T04:17:30,381 adding 'Mikado/loci/sublocus.py' 2023-09-10T04:17:30,387 adding 'Mikado/loci/superlocus.py' 2023-09-10T04:17:30,389 adding 'Mikado/parsers/GFF.py' 2023-09-10T04:17:30,391 adding 'Mikado/parsers/GTF.py' 2023-09-10T04:17:30,392 adding 'Mikado/parsers/__init__.py' 2023-09-10T04:17:30,395 adding 'Mikado/parsers/bed12.py' 2023-09-10T04:17:30,398 adding 'Mikado/parsers/blast_utils.py' 2023-09-10T04:17:30,402 adding 'Mikado/parsers/blast_xml.py' 2023-09-10T04:17:30,404 adding 'Mikado/parsers/gfannotation.py' 2023-09-10T04:17:30,406 adding 'Mikado/picking/__init__.py' 2023-09-10T04:17:30,410 adding 'Mikado/picking/loci_processer.py' 2023-09-10T04:17:30,415 adding 'Mikado/picking/picker.py' 2023-09-10T04:17:30,417 adding 'Mikado/preparation/__init__.py' 2023-09-10T04:17:30,420 adding 'Mikado/preparation/annotation_parser.py' 2023-09-10T04:17:30,421 adding 'Mikado/preparation/checking.py' 2023-09-10T04:17:30,424 adding 'Mikado/preparation/prepare.py' 2023-09-10T04:17:30,426 adding 'Mikado/scales/__init__.py' 2023-09-10T04:17:30,430 adding 'Mikado/scales/accountant.py' 2023-09-10T04:17:30,434 adding 'Mikado/scales/assigner.py' 2023-09-10T04:17:30,437 adding 'Mikado/scales/class_codes.py' 2023-09-10T04:17:30,439 adding 'Mikado/scales/compare.py' 2023-09-10T04:17:30,483 adding 'Mikado/scales/contrast.c' 2023-09-10T04:17:30,596 adding 'Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T04:17:30,601 adding 'Mikado/scales/contrast.pxd' 2023-09-10T04:17:30,604 adding 'Mikado/scales/contrast.pyx' 2023-09-10T04:17:30,629 adding 'Mikado/scales/f1.c' 2023-09-10T04:17:30,668 adding 'Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T04:17:30,671 adding 'Mikado/scales/f1.pxd' 2023-09-10T04:17:30,672 adding 'Mikado/scales/f1.pyx' 2023-09-10T04:17:30,673 adding 'Mikado/scales/resultstorer.py' 2023-09-10T04:17:30,675 adding 'Mikado/serializers/__init__.py' 2023-09-10T04:17:30,677 adding 'Mikado/serializers/external.py' 2023-09-10T04:17:30,679 adding 'Mikado/serializers/junction.py' 2023-09-10T04:17:30,681 adding 'Mikado/serializers/orf.py' 2023-09-10T04:17:30,683 adding 'Mikado/serializers/blast_serializer/__init__.py' 2023-09-10T04:17:30,684 adding 'Mikado/serializers/blast_serializer/hit.py' 2023-09-10T04:17:30,686 adding 'Mikado/serializers/blast_serializer/hsp.py' 2023-09-10T04:17:30,687 adding 'Mikado/serializers/blast_serializer/query.py' 2023-09-10T04:17:30,689 adding 'Mikado/serializers/blast_serializer/target.py' 2023-09-10T04:17:30,690 adding 'Mikado/serializers/blast_serializer/utils.py' 2023-09-10T04:17:30,694 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2023-09-10T04:17:30,696 adding 'Mikado/subprograms/__init__.py' 2023-09-10T04:17:30,697 adding 'Mikado/subprograms/__main__.py' 2023-09-10T04:17:30,699 adding 'Mikado/subprograms/compare.py' 2023-09-10T04:17:30,701 adding 'Mikado/subprograms/configure.py' 2023-09-10T04:17:30,703 adding 'Mikado/subprograms/pick.py' 2023-09-10T04:17:30,705 adding 'Mikado/subprograms/prepare.py' 2023-09-10T04:17:30,707 adding 'Mikado/subprograms/serialise.py' 2023-09-10T04:17:30,709 adding 'Mikado/subprograms/util/__init__.py' 2023-09-10T04:17:30,711 adding 'Mikado/subprograms/util/awk_gtf.py' 2023-09-10T04:17:30,712 adding 'Mikado/subprograms/util/class_codes.py' 2023-09-10T04:17:30,713 adding 'Mikado/subprograms/util/convert.py' 2023-09-10T04:17:30,715 adding 'Mikado/subprograms/util/grep.py' 2023-09-10T04:17:30,716 adding 'Mikado/subprograms/util/merge_blast.py' 2023-09-10T04:17:30,718 adding 'Mikado/subprograms/util/metrics.py' 2023-09-10T04:17:30,721 adding 'Mikado/subprograms/util/stats.py' 2023-09-10T04:17:30,723 adding 'Mikado/subprograms/util/trim.py' 2023-09-10T04:17:30,725 adding 'Mikado/tests/__init__.py' 2023-09-10T04:17:30,728 adding 'Mikado/tests/assigner_tester.py' 2023-09-10T04:17:31,615 adding 'Mikado/tests/chr5.fas.gz' 2023-09-10T04:17:31,682 adding 'Mikado/tests/configuration.yaml' 2023-09-10T04:17:31,683 adding 'Mikado/tests/cufflinks.gtf' 2023-09-10T04:17:31,685 adding 'Mikado/tests/genome.fai' 2023-09-10T04:17:31,686 adding 'Mikado/tests/intervaltree_tests.py' 2023-09-10T04:17:31,691 adding 'Mikado/tests/junctions.bed' 2023-09-10T04:17:31,697 adding 'Mikado/tests/locus_tester.py' 2023-09-10T04:17:31,722 adding 'Mikado/tests/mikado.blast.asn.gz' 2023-09-10T04:17:31,776 adding 'Mikado/tests/mikado.blast.xml' 2023-09-10T04:17:32,050 adding 'Mikado/tests/mikado.db' 2023-09-10T04:17:32,067 adding 'Mikado/tests/mikado_prepared.gtf' 2023-09-10T04:17:32,073 adding 'Mikado/tests/orf_tester.py' 2023-09-10T04:17:32,074 adding 'Mikado/tests/parser_testing.py' 2023-09-10T04:17:32,076 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2023-09-10T04:17:32,077 adding 'Mikado/tests/plants.yaml~' 2023-09-10T04:17:32,078 adding 'Mikado/tests/scoring_only_cds.yaml' 2023-09-10T04:17:32,080 adding 'Mikado/tests/test_blast_related.py' 2023-09-10T04:17:32,081 adding 'Mikado/tests/test_clique_methods.py' 2023-09-10T04:17:32,082 adding 'Mikado/tests/test_db_utils.py' 2023-09-10T04:17:32,083 adding 'Mikado/tests/test_external_scores.py' 2023-09-10T04:17:32,085 adding 'Mikado/tests/test_gene.py' 2023-09-10T04:17:32,086 adding 'Mikado/tests/test_invalid_orfs.py' 2023-09-10T04:17:32,087 adding 'Mikado/tests/test_json.py' 2023-09-10T04:17:32,089 adding 'Mikado/tests/test_metrics.py' 2023-09-10T04:17:32,090 adding 'Mikado/tests/test_modifications.py' 2023-09-10T04:17:32,092 adding 'Mikado/tests/test_serialisation.py' 2023-09-10T04:17:32,094 adding 'Mikado/tests/test_splitting.py' 2023-09-10T04:17:32,097 adding 'Mikado/tests/test_system_calls.py' 2023-09-10T04:17:32,099 adding 'Mikado/tests/test_transcript_checker.py' 2023-09-10T04:17:32,101 adding 'Mikado/tests/test_transcript_methods.py' 2023-09-10T04:17:32,104 adding 'Mikado/tests/transcript_tester_negative.py' 2023-09-10T04:17:32,107 adding 'Mikado/tests/transcript_tester_positive.py' 2023-09-10T04:17:32,110 adding 'Mikado/tests/transcript_tester_single.py' 2023-09-10T04:17:32,112 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2023-09-10T04:17:32,115 adding 'Mikado/tests/trinity.gff3' 2023-09-10T04:17:32,117 adding 'Mikado/tests/trinity.gtf' 2023-09-10T04:17:32,119 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2023-09-10T04:17:32,120 adding 'Mikado/tests/trinity_stats.txt' 2023-09-10T04:17:32,846 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2023-09-10T04:17:32,901 adding 'Mikado/tests/utilities_tester.py' 2023-09-10T04:17:32,904 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2023-09-10T04:17:32,905 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2023-09-10T04:17:32,906 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2023-09-10T04:17:32,910 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2023-09-10T04:17:32,914 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2023-09-10T04:17:32,919 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2023-09-10T04:17:32,921 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2023-09-10T04:17:32,923 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2023-09-10T04:17:32,925 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2023-09-10T04:17:32,933 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2023-09-10T04:17:32,942 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2023-09-10T04:17:32,949 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2023-09-10T04:17:32,955 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2023-09-10T04:17:32,961 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2023-09-10T04:17:32,967 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2023-09-10T04:17:32,968 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2023-09-10T04:17:32,970 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2023-09-10T04:17:32,971 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2023-09-10T04:17:32,973 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2023-09-10T04:17:32,974 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2023-09-10T04:17:32,977 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2023-09-10T04:17:32,979 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2023-09-10T04:17:32,980 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2023-09-10T04:17:32,982 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2023-09-10T04:17:32,983 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2023-09-10T04:17:32,985 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2023-09-10T04:17:32,986 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2023-09-10T04:17:32,988 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2023-09-10T04:17:32,989 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2023-09-10T04:17:32,991 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2023-09-10T04:17:32,992 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2023-09-10T04:17:32,994 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2023-09-10T04:17:32,995 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2023-09-10T04:17:32,996 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2023-09-10T04:17:32,997 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2023-09-10T04:17:32,999 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2023-09-10T04:17:33,000 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2023-09-10T04:17:33,002 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2023-09-10T04:17:33,004 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2023-09-10T04:17:33,005 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2023-09-10T04:17:33,007 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2023-09-10T04:17:33,008 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2023-09-10T04:17:33,010 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2023-09-10T04:17:33,011 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2023-09-10T04:17:33,013 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2023-09-10T04:17:33,014 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2023-09-10T04:17:33,016 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2023-09-10T04:17:33,017 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2023-09-10T04:17:33,019 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2023-09-10T04:17:33,021 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2023-09-10T04:17:33,022 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2023-09-10T04:17:33,024 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2023-09-10T04:17:33,026 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2023-09-10T04:17:33,028 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2023-09-10T04:17:33,032 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2023-09-10T04:17:33,037 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2023-09-10T04:17:33,042 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2023-09-10T04:17:33,044 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2023-09-10T04:17:33,046 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2023-09-10T04:17:33,048 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2023-09-10T04:17:33,051 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2023-09-10T04:17:33,053 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2023-09-10T04:17:33,056 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2023-09-10T04:17:33,059 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2023-09-10T04:17:33,062 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2023-09-10T04:17:33,065 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2023-09-10T04:17:33,071 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2023-09-10T04:17:33,076 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2023-09-10T04:17:33,081 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2023-09-10T04:17:33,085 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2023-09-10T04:17:33,089 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2023-09-10T04:17:33,093 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2023-09-10T04:17:33,095 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2023-09-10T04:17:33,097 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2023-09-10T04:17:33,098 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2023-09-10T04:17:33,100 adding 'Mikado/tests/fusion_test/fusion_test.log' 2023-09-10T04:17:33,102 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2023-09-10T04:17:33,103 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2023-09-10T04:17:33,104 adding 'Mikado/transcripts/__init__.py' 2023-09-10T04:17:33,106 adding 'Mikado/transcripts/clique_methods.py' 2023-09-10T04:17:33,117 adding 'Mikado/transcripts/transcript.py' 2023-09-10T04:17:33,120 adding 'Mikado/transcripts/transcriptchecker.py' 2023-09-10T04:17:33,122 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2023-09-10T04:17:33,125 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2023-09-10T04:17:33,127 adding 'Mikado/transcripts/transcript_methods/printing.py' 2023-09-10T04:17:33,130 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2023-09-10T04:17:33,134 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2023-09-10T04:17:33,137 adding 'Mikado/utilities/__init__.py' 2023-09-10T04:17:33,138 adding 'Mikado/utilities/dbutils.py' 2023-09-10T04:17:33,204 adding 'Mikado/utilities/intervaltree.c' 2023-09-10T04:17:33,390 adding 'Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T04:17:33,399 adding 'Mikado/utilities/intervaltree.pyx' 2023-09-10T04:17:33,401 adding 'Mikado/utilities/log_utils.py' 2023-09-10T04:17:33,426 adding 'Mikado/utilities/overlap.c' 2023-09-10T04:17:33,472 adding 'Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T04:17:33,475 adding 'Mikado/utilities/overlap.pxd' 2023-09-10T04:17:33,476 adding 'Mikado/utilities/overlap.pyx' 2023-09-10T04:17:33,479 adding 'Mikado-1.1.data/scripts/add_transcript_feature_to_gtf.py' 2023-09-10T04:17:33,480 adding 'Mikado-1.1.data/scripts/align_collect.py' 2023-09-10T04:17:33,481 adding 'Mikado-1.1.data/scripts/analyse_metrics.py' 2023-09-10T04:17:33,483 adding 'Mikado-1.1.data/scripts/asm_collect.py' 2023-09-10T04:17:33,484 adding 'Mikado-1.1.data/scripts/bam2gtf.py' 2023-09-10T04:17:33,486 adding 'Mikado-1.1.data/scripts/calculate_distances.py' 2023-09-10T04:17:33,487 adding 'Mikado-1.1.data/scripts/class_run.py' 2023-09-10T04:17:33,489 adding 'Mikado-1.1.data/scripts/convert_cdna_match_gff3.py' 2023-09-10T04:17:33,490 adding 'Mikado-1.1.data/scripts/create_model.py' 2023-09-10T04:17:33,492 adding 'Mikado-1.1.data/scripts/extract_promoter_regions.py' 2023-09-10T04:17:33,493 adding 'Mikado-1.1.data/scripts/getFastaFromIds.py' 2023-09-10T04:17:33,495 adding 'Mikado-1.1.data/scripts/gffjunc_to_bed12.py' 2023-09-10T04:17:33,496 adding 'Mikado-1.1.data/scripts/grep.py' 2023-09-10T04:17:33,497 adding 'Mikado-1.1.data/scripts/merge_junction_bed12.py' 2023-09-10T04:17:33,499 adding 'Mikado-1.1.data/scripts/remove_from_embl.py' 2023-09-10T04:17:33,500 adding 'Mikado-1.1.data/scripts/remove_utrs.py' 2023-09-10T04:17:33,501 adding 'Mikado-1.1.data/scripts/sanitize_blast_db.py' 2023-09-10T04:17:33,503 adding 'Mikado-1.1.data/scripts/self_training.py' 2023-09-10T04:17:33,504 adding 'Mikado-1.1.data/scripts/split_fasta.py' 2023-09-10T04:17:33,505 adding 'Mikado-1.1.data/scripts/tease_maker_apart.py' 2023-09-10T04:17:33,507 adding 'Mikado-1.1.data/scripts/trim_long_introns.py' 2023-09-10T04:17:33,509 adding 'Mikado-1.1.dist-info/AUTHORS' 2023-09-10T04:17:33,510 adding 'Mikado-1.1.dist-info/METADATA' 2023-09-10T04:17:33,511 adding 'Mikado-1.1.dist-info/WHEEL' 2023-09-10T04:17:33,512 adding 'Mikado-1.1.dist-info/entry_points.txt' 2023-09-10T04:17:33,513 adding 'Mikado-1.1.dist-info/top_level.txt' 2023-09-10T04:17:33,517 adding 'Mikado-1.1.dist-info/RECORD' 2023-09-10T04:17:33,708 removing build/bdist.linux-armv7l/wheel 2023-09-10T04:17:33,928 Building wheel for mikado (setup.py): finished with status 'done' 2023-09-10T04:17:34,139 Created wheel for mikado: filename=Mikado-1.1-cp311-cp311-linux_armv7l.whl size=17631067 sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 2023-09-10T04:17:34,140 Stored in directory: /tmp/pip-ephem-wheel-cache-_xyi0qjt/wheels/94/cb/5d/429950875dd2bc172840b78112c4837f49855b6d99cac78c99 2023-09-10T04:17:34,164 Successfully built mikado 2023-09-10T04:17:34,607 Removed build tracker: '/tmp/pip-build-tracker-z8z1nyqb'