2023-09-10T06:06:19,696 Created temporary directory: /tmp/pip-build-tracker-mncd69ff 2023-09-10T06:06:19,697 Initialized build tracking at /tmp/pip-build-tracker-mncd69ff 2023-09-10T06:06:19,697 Created build tracker: /tmp/pip-build-tracker-mncd69ff 2023-09-10T06:06:19,698 Entered build tracker: /tmp/pip-build-tracker-mncd69ff 2023-09-10T06:06:19,699 Created temporary directory: /tmp/pip-wheel-5pq16p8e 2023-09-10T06:06:19,701 Created temporary directory: /tmp/pip-ephem-wheel-cache-wc7utzq8 2023-09-10T06:06:19,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T06:06:19,727 2 location(s) to search for versions of parmed: 2023-09-10T06:06:19,727 * https://pypi.org/simple/parmed/ 2023-09-10T06:06:19,727 * https://www.piwheels.org/simple/parmed/ 2023-09-10T06:06:19,728 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-10T06:06:19,728 Getting page https://pypi.org/simple/parmed/ 2023-09-10T06:06:19,730 Found index url https://pypi.org/simple/ 2023-09-10T06:06:19,950 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-10T06:06:19,954 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-10T06:06:19,955 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-10T06:06:19,955 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-10T06:06:19,956 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-10T06:06:19,957 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-10T06:06:19,957 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-10T06:06:19,958 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-10T06:06:19,959 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-10T06:06:19,959 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-10T06:06:19,960 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-10T06:06:19,961 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-10T06:06:19,961 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-10T06:06:19,962 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-10T06:06:19,963 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-10T06:06:19,964 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-10T06:06:19,965 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-10T06:06:19,966 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-10T06:06:19,967 Found index url https://www.piwheels.org/simple/ 2023-09-10T06:06:28,051 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-10T06:06:28,095 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,169 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,170 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,170 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,171 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,171 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,172 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,173 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-10T06:06:28,173 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-10T06:06:28,174 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-10T06:06:28,194 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-10T06:06:28,212 Collecting parmed==3.0.0 2023-09-10T06:06:28,214 Created temporary directory: /tmp/pip-unpack-_9r4n7db 2023-09-10T06:06:28,699 Downloading ParmEd-3.0.0.tar.gz (1.6 MB) 2023-09-10T06:06:29,813 Added parmed==3.0.0 from https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-mncd69ff' 2023-09-10T06:06:29,815 Running setup.py (path:/tmp/pip-wheel-5pq16p8e/parmed_d7a50b0d11624ff8b8c931a80ed14cdf/setup.py) egg_info for package parmed 2023-09-10T06:06:29,816 Created temporary directory: /tmp/pip-pip-egg-info-uo10r1c2 2023-09-10T06:06:29,816 Preparing metadata (setup.py): started 2023-09-10T06:06:29,817 Running command python setup.py egg_info 2023-09-10T06:06:30,928 running egg_info 2023-09-10T06:06:30,930 creating /tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info 2023-09-10T06:06:30,954 writing /tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/PKG-INFO 2023-09-10T06:06:30,957 writing dependency_links to /tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/dependency_links.txt 2023-09-10T06:06:30,958 writing entry points to /tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/entry_points.txt 2023-09-10T06:06:30,960 writing top-level names to /tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/top_level.txt 2023-09-10T06:06:30,961 writing manifest file '/tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/SOURCES.txt' 2023-09-10T06:06:31,030 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-10T06:06:31,053 reading manifest file '/tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/SOURCES.txt' 2023-09-10T06:06:31,055 reading manifest template 'MANIFEST.in' 2023-09-10T06:06:31,077 writing manifest file '/tmp/pip-pip-egg-info-uo10r1c2/ParmEd.egg-info/SOURCES.txt' 2023-09-10T06:06:31,187 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T06:06:31,191 Source in /tmp/pip-wheel-5pq16p8e/parmed_d7a50b0d11624ff8b8c931a80ed14cdf has version 3.0.0, which satisfies requirement parmed==3.0.0 from https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz 2023-09-10T06:06:31,192 Removed parmed==3.0.0 from https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-mncd69ff' 2023-09-10T06:06:31,195 Created temporary directory: /tmp/pip-unpack-roylfi22 2023-09-10T06:06:31,196 Created temporary directory: /tmp/pip-unpack-rza6m7jt 2023-09-10T06:06:31,199 Building wheels for collected packages: parmed 2023-09-10T06:06:31,203 Created temporary directory: /tmp/pip-wheel-qkqlxfsx 2023-09-10T06:06:31,203 Building wheel for parmed (setup.py): started 2023-09-10T06:06:31,205 Destination directory: /tmp/pip-wheel-qkqlxfsx 2023-09-10T06:06:31,205 Running command python setup.py bdist_wheel 2023-09-10T06:06:32,217 running bdist_wheel 2023-09-10T06:06:32,309 running build 2023-09-10T06:06:32,310 running build_py 2023-09-10T06:06:32,314 creating build 2023-09-10T06:06:32,315 creating build/lib.linux-armv7l-cpython-311 2023-09-10T06:06:32,316 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,317 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,323 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,325 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,327 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,330 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,331 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,333 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,338 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,340 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,342 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,344 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,346 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,347 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T06:06:32,350 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,351 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,354 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,357 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,359 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,361 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,364 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,366 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,369 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,371 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,373 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,376 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,378 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T06:06:32,381 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T06:06:32,382 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T06:06:32,384 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T06:06:32,386 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T06:06:32,389 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,390 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,392 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,394 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,396 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,398 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T06:06:32,401 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,402 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,405 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,407 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,408 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,410 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,412 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,414 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,416 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,418 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,421 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,423 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,425 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T06:06:32,427 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,428 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,430 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,432 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,434 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,435 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,437 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T06:06:32,440 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,441 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,443 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,445 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,447 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,450 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T06:06:32,453 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,454 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T06:06:32,455 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T06:06:32,456 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T06:06:32,459 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T06:06:32,461 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T06:06:32,464 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T06:06:32,465 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T06:06:32,466 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T06:06:32,469 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T06:06:32,470 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T06:06:32,471 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T06:06:32,474 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,476 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,478 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,480 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,483 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,484 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,487 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T06:06:32,490 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,491 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,491 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,493 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,495 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,498 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,499 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,501 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,502 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,504 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,506 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,508 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,511 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T06:06:32,513 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,514 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,517 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,521 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,521 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,523 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,526 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T06:06:32,528 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,531 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,533 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,535 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,537 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,540 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,541 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,544 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T06:06:32,546 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,547 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,551 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,552 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,555 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,557 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T06:06:32,559 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,560 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,563 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,565 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,567 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,569 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,574 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,576 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,578 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,580 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,582 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,584 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,585 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T06:06:32,588 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T06:06:32,589 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T06:06:32,591 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T06:06:32,593 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,594 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,596 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,598 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,600 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,602 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,605 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T06:06:32,607 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T06:06:32,608 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T06:06:32,611 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T06:06:32,613 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T06:06:32,617 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-10T06:06:32,618 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-10T06:06:32,631 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-10T06:06:32,632 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.0.0' 2023-09-10T06:06:32,632 running build_ext 2023-09-10T06:06:33,137 building 'parmed.amber._rdparm' extension 2023-09-10T06:06:33,138 creating build/temp.linux-armv7l-cpython-311 2023-09-10T06:06:33,138 creating build/temp.linux-armv7l-cpython-311/src 2023-09-10T06:06:33,139 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-5pq16p8e/parmed_d7a50b0d11624ff8b8c931a80ed14cdf/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-10T06:06:38,799 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-5pq16p8e/parmed_d7a50b0d11624ff8b8c931a80ed14cdf/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-10T06:06:41,960 In file included from /usr/include/c++/12/vector:70, 2023-09-10T06:06:41,962 from src/readparm.h:8, 2023-09-10T06:06:41,962 from src/readparm.cpp:10: 2023-09-10T06:06:41,963 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-10T06:06:41,963 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-10T06:06:41,964 439 | vector<_Tp, _Alloc>:: 2023-09-10T06:06:41,964 | ^~~~~~~~~~~~~~~~~~~ 2023-09-10T06:06:43,049 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-10T06:06:43,049 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-10T06:06:43,050 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-10T06:06:43,051 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-10T06:06:43,177 In file included from /usr/include/c++/12/vector:64: 2023-09-10T06:06:43,178 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T06:06:43,179 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-10T06:06:43,179 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T06:06:43,180 1287 | _M_realloc_insert(end(), __x); 2023-09-10T06:06:43,181 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T06:06:43,181 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T06:06:43,182 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-10T06:06:43,183 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T06:06:43,184 1287 | _M_realloc_insert(end(), __x); 2023-09-10T06:06:43,185 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T06:06:43,185 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T06:06:43,186 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-10T06:06:43,187 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T06:06:43,187 1287 | _M_realloc_insert(end(), __x); 2023-09-10T06:06:43,188 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T06:06:44,948 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-10T06:06:45,251 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-10T06:06:45,252 !! 2023-09-10T06:06:45,253 ******************************************************************************** 2023-09-10T06:06:45,253 Please avoid running ``setup.py`` directly. 2023-09-10T06:06:45,254 Instead, use pypa/build, pypa/installer or other 2023-09-10T06:06:45,254 standards-based tools. 2023-09-10T06:06:45,255 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-10T06:06:45,256 ******************************************************************************** 2023-09-10T06:06:45,257 !! 2023-09-10T06:06:45,257 self.initialize_options() 2023-09-10T06:06:45,279 installing to build/bdist.linux-armv7l/wheel 2023-09-10T06:06:45,280 running install 2023-09-10T06:06:45,303 running install_lib 2023-09-10T06:06:45,328 creating build/bdist.linux-armv7l 2023-09-10T06:06:45,328 creating build/bdist.linux-armv7l/wheel 2023-09-10T06:06:45,330 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,332 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,333 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,335 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,337 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,340 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,342 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,345 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,346 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,348 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,351 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,353 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,355 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,356 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,358 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,360 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,362 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,364 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,367 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T06:06:45,369 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,371 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,372 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T06:06:45,374 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,379 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,381 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,383 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,384 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,386 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,388 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,390 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,393 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T06:06:45,396 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,398 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,400 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,401 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,403 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,405 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,407 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,409 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T06:06:45,412 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,413 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T06:06:45,414 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T06:06:45,416 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T06:06:45,418 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T06:06:45,421 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T06:06:45,423 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,425 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,428 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,429 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,433 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,434 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,436 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T06:06:45,439 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T06:06:45,440 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T06:06:45,442 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T06:06:45,444 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,445 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,448 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,450 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,452 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,454 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T06:06:45,456 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,458 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,463 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,466 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T06:06:45,467 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T06:06:45,469 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T06:06:45,471 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T06:06:45,472 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T06:06:45,474 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T06:06:45,477 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T06:06:45,480 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-10T06:06:45,481 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-10T06:06:45,486 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,488 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,489 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,491 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,493 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,495 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,497 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,499 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,501 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,503 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,505 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,508 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,510 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,513 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T06:06:45,515 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,517 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T06:06:45,517 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T06:06:45,519 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T06:06:45,521 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,524 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,525 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,527 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,529 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,531 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,533 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,538 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,541 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,543 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,546 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,546 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,549 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,550 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,552 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,554 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,557 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T06:06:45,559 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T06:06:45,560 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T06:06:45,563 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T06:06:45,565 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T06:06:45,567 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,569 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,571 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,573 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T06:06:45,575 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,576 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,579 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,580 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,583 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,585 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,588 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T06:06:45,590 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,592 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,592 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,596 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,599 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,601 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,604 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,607 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,610 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,613 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,614 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,616 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,618 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,619 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,621 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,623 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T06:06:45,626 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,640 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,642 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,644 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,647 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,650 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T06:06:45,652 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T06:06:45,654 running install_egg_info 2023-09-10T06:06:45,719 running egg_info 2023-09-10T06:06:45,752 writing ParmEd.egg-info/PKG-INFO 2023-09-10T06:06:45,755 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-10T06:06:45,757 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-10T06:06:45,759 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-10T06:06:45,802 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-10T06:06:45,826 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-10T06:06:45,834 reading manifest template 'MANIFEST.in' 2023-09-10T06:06:45,855 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-10T06:06:45,857 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.0.0-py3.11.egg-info 2023-09-10T06:06:45,866 running install_scripts 2023-09-10T06:06:45,915 creating build/bdist.linux-armv7l/wheel/ParmEd-3.0.0.dist-info/WHEEL 2023-09-10T06:06:45,918 creating '/tmp/pip-wheel-qkqlxfsx/ParmEd-3.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-10T06:06:45,921 adding 'parmed/__init__.py' 2023-09-10T06:06:45,923 adding 'parmed/_version.py' 2023-09-10T06:06:45,924 adding 'parmed/constants.py' 2023-09-10T06:06:45,926 adding 'parmed/exceptions.py' 2023-09-10T06:06:45,928 adding 'parmed/geometry.py' 2023-09-10T06:06:45,931 adding 'parmed/parameters.py' 2023-09-10T06:06:45,934 adding 'parmed/periodic_table.py' 2023-09-10T06:06:45,936 adding 'parmed/residue.py' 2023-09-10T06:06:45,938 adding 'parmed/scripts.py' 2023-09-10T06:06:45,957 adding 'parmed/structure.py' 2023-09-10T06:06:45,960 adding 'parmed/symmetry.py' 2023-09-10T06:06:45,980 adding 'parmed/topologyobjects.py' 2023-09-10T06:06:45,983 adding 'parmed/vec3.py' 2023-09-10T06:06:45,985 adding 'parmed/amber/__init__.py' 2023-09-10T06:06:45,996 adding 'parmed/amber/_amberparm.py' 2023-09-10T06:06:46,001 adding 'parmed/amber/_chamberparm.py' 2023-09-10T06:06:46,160 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T06:06:46,172 adding 'parmed/amber/_tinkerparm.py' 2023-09-10T06:06:46,177 adding 'parmed/amber/amberformat.py' 2023-09-10T06:06:46,180 adding 'parmed/amber/asciicrd.py' 2023-09-10T06:06:46,183 adding 'parmed/amber/mask.py' 2023-09-10T06:06:46,186 adding 'parmed/amber/netcdffiles.py' 2023-09-10T06:06:46,189 adding 'parmed/amber/offlib.py' 2023-09-10T06:06:46,192 adding 'parmed/amber/parameters.py' 2023-09-10T06:06:46,194 adding 'parmed/amber/readparm.py' 2023-09-10T06:06:46,199 adding 'parmed/amber/titratable_residues.py' 2023-09-10T06:06:46,201 adding 'parmed/amber/mdin/__init__.py' 2023-09-10T06:06:46,203 adding 'parmed/amber/mdin/cntrl.py' 2023-09-10T06:06:46,204 adding 'parmed/amber/mdin/ewald.py' 2023-09-10T06:06:46,206 adding 'parmed/amber/mdin/mdin.py' 2023-09-10T06:06:46,208 adding 'parmed/amber/mdin/pb.py' 2023-09-10T06:06:46,209 adding 'parmed/amber/mdin/qmmm.py' 2023-09-10T06:06:46,211 adding 'parmed/charmm/__init__.py' 2023-09-10T06:06:46,212 adding 'parmed/charmm/_charmmfile.py' 2023-09-10T06:06:46,214 adding 'parmed/charmm/charmmcrds.py' 2023-09-10T06:06:46,220 adding 'parmed/charmm/parameters.py' 2023-09-10T06:06:46,224 adding 'parmed/charmm/psf.py' 2023-09-10T06:06:46,226 adding 'parmed/formats/__init__.py' 2023-09-10T06:06:46,229 adding 'parmed/formats/mol2.py' 2023-09-10T06:06:46,236 adding 'parmed/formats/pdb.py' 2023-09-10T06:06:46,239 adding 'parmed/formats/pqr.py' 2023-09-10T06:06:46,241 adding 'parmed/formats/psf.py' 2023-09-10T06:06:46,242 adding 'parmed/formats/registry.py' 2023-09-10T06:06:46,244 adding 'parmed/formats/sdf.py' 2023-09-10T06:06:46,247 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-10T06:06:46,249 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-10T06:06:46,251 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-10T06:06:46,252 adding 'parmed/formats/pdbx/__init__.py' 2023-09-10T06:06:46,254 adding 'parmed/gromacs/__init__.py' 2023-09-10T06:06:46,256 adding 'parmed/gromacs/_cpp.py' 2023-09-10T06:06:46,257 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-10T06:06:46,259 adding 'parmed/gromacs/gromacsgro.py' 2023-09-10T06:06:46,269 adding 'parmed/gromacs/gromacstop.py' 2023-09-10T06:06:46,272 adding 'parmed/modeller/__init__.py' 2023-09-10T06:06:46,276 adding 'parmed/modeller/residue.py' 2023-09-10T06:06:46,277 adding 'parmed/modeller/standardtemplates.py' 2023-09-10T06:06:46,286 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-10T06:06:46,288 adding 'parmed/namd/__init__.py' 2023-09-10T06:06:46,289 adding 'parmed/namd/namdbinfiles.py' 2023-09-10T06:06:46,291 adding 'parmed/openmm/__init__.py' 2023-09-10T06:06:46,295 adding 'parmed/openmm/parameters.py' 2023-09-10T06:06:46,299 adding 'parmed/openmm/reporters.py' 2023-09-10T06:06:46,301 adding 'parmed/openmm/topsystem.py' 2023-09-10T06:06:46,303 adding 'parmed/openmm/utils.py' 2023-09-10T06:06:46,305 adding 'parmed/openmm/xmlfile.py' 2023-09-10T06:06:46,306 adding 'parmed/rdkit/__init__.py' 2023-09-10T06:06:46,307 adding 'parmed/rdkit/rdkit.py' 2023-09-10T06:06:46,309 adding 'parmed/rosetta/__init__.py' 2023-09-10T06:06:46,310 adding 'parmed/rosetta/pose.py' 2023-09-10T06:06:46,312 adding 'parmed/tinker/__init__.py' 2023-09-10T06:06:46,315 adding 'parmed/tinker/parameterfile.py' 2023-09-10T06:06:46,317 adding 'parmed/tinker/system.py' 2023-09-10T06:06:46,319 adding 'parmed/tinker/tinkerfiles.py' 2023-09-10T06:06:46,321 adding 'parmed/tinker/topologyobjects.py' 2023-09-10T06:06:46,323 adding 'parmed/tools/__init__.py' 2023-09-10T06:06:46,344 adding 'parmed/tools/actions.py' 2023-09-10T06:06:46,347 adding 'parmed/tools/add1264.py' 2023-09-10T06:06:46,348 adding 'parmed/tools/addljtype.py' 2023-09-10T06:06:46,350 adding 'parmed/tools/argumentlist.py' 2023-09-10T06:06:46,352 adding 'parmed/tools/changeradii.py' 2023-09-10T06:06:46,354 adding 'parmed/tools/checkvalidity.py' 2023-09-10T06:06:46,356 adding 'parmed/tools/coarsegrain.py' 2023-09-10T06:06:46,357 adding 'parmed/tools/exceptions.py' 2023-09-10T06:06:46,360 adding 'parmed/tools/logos.py' 2023-09-10T06:06:46,362 adding 'parmed/tools/parmed_cmd.py' 2023-09-10T06:06:46,364 adding 'parmed/tools/parmlist.py' 2023-09-10T06:06:46,365 adding 'parmed/tools/gui/__init__.py' 2023-09-10T06:06:46,369 adding 'parmed/tools/gui/_guiactions.py' 2023-09-10T06:06:46,372 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-10T06:06:46,373 adding 'parmed/tools/gui/guiactions.py' 2023-09-10T06:06:46,374 adding 'parmed/tools/gui/guifiletools.py' 2023-09-10T06:06:46,376 adding 'parmed/tools/gui/guitools.py' 2023-09-10T06:06:46,378 adding 'parmed/tools/simulations/__init__.py' 2023-09-10T06:06:46,382 adding 'parmed/tools/simulations/openmm.py' 2023-09-10T06:06:46,384 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-10T06:06:46,386 adding 'parmed/unit/__init__.py' 2023-09-10T06:06:46,387 adding 'parmed/unit/basedimension.py' 2023-09-10T06:06:46,389 adding 'parmed/unit/baseunit.py' 2023-09-10T06:06:46,390 adding 'parmed/unit/constants.py' 2023-09-10T06:06:46,392 adding 'parmed/unit/mymatrix.py' 2023-09-10T06:06:46,394 adding 'parmed/unit/prefix.py' 2023-09-10T06:06:46,398 adding 'parmed/unit/quantity.py' 2023-09-10T06:06:46,400 adding 'parmed/unit/standard_dimensions.py' 2023-09-10T06:06:46,403 adding 'parmed/unit/unit.py' 2023-09-10T06:06:46,405 adding 'parmed/unit/unit_definitions.py' 2023-09-10T06:06:46,406 adding 'parmed/unit/unit_math.py' 2023-09-10T06:06:46,408 adding 'parmed/unit/unit_operators.py' 2023-09-10T06:06:46,410 adding 'parmed/utils/__init__.py' 2023-09-10T06:06:46,411 adding 'parmed/utils/decorators.py' 2023-09-10T06:06:46,412 adding 'parmed/utils/io.py' 2023-09-10T06:06:46,416 adding 'parmed/utils/netcdf.py' 2023-09-10T06:06:46,418 adding 'parmed/utils/pairlist.py' 2023-09-10T06:06:46,420 adding 'parmed/utils/pandautils.py' 2023-09-10T06:06:46,423 adding 'parmed/utils/six.py' 2023-09-10T06:06:46,425 adding 'parmed/utils/timer.py' 2023-09-10T06:06:46,426 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-10T06:06:46,427 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-10T06:06:46,429 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-10T06:06:46,430 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-10T06:06:46,431 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-10T06:06:46,433 adding 'parmed/utils/fortranformat/_input.py' 2023-09-10T06:06:46,435 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-10T06:06:46,436 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-10T06:06:46,439 adding 'parmed/utils/fortranformat/_output.py' 2023-09-10T06:06:46,441 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-10T06:06:46,442 adding 'parmed/utils/fortranformat/config.py' 2023-09-10T06:06:46,443 adding 'ParmEd-3.0.0.dist-info/METADATA' 2023-09-10T06:06:46,444 adding 'ParmEd-3.0.0.dist-info/WHEEL' 2023-09-10T06:06:46,445 adding 'ParmEd-3.0.0.dist-info/entry_points.txt' 2023-09-10T06:06:46,445 adding 'ParmEd-3.0.0.dist-info/top_level.txt' 2023-09-10T06:06:46,448 adding 'ParmEd-3.0.0.dist-info/RECORD' 2023-09-10T06:06:46,459 removing build/bdist.linux-armv7l/wheel 2023-09-10T06:06:46,635 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-10T06:06:46,647 Created wheel for parmed: filename=ParmEd-3.0.0-cp311-cp311-linux_armv7l.whl size=860384 sha256=be4edcb9723dd36cc5cce78514693c41d58adf4a8ce51434605f135ef6eee984 2023-09-10T06:06:46,649 Stored in directory: /tmp/pip-ephem-wheel-cache-wc7utzq8/wheels/15/60/54/382a5bad8c2dcbaf9981cf58009f8d0615f9200cc745ffeda8 2023-09-10T06:06:46,661 Successfully built parmed 2023-09-10T06:06:46,693 Removed build tracker: '/tmp/pip-build-tracker-mncd69ff'