2023-09-10T11:54:28,591 Created temporary directory: /tmp/pip-build-tracker-gjou2y7x 2023-09-10T11:54:28,592 Initialized build tracking at /tmp/pip-build-tracker-gjou2y7x 2023-09-10T11:54:28,593 Created build tracker: /tmp/pip-build-tracker-gjou2y7x 2023-09-10T11:54:28,593 Entered build tracker: /tmp/pip-build-tracker-gjou2y7x 2023-09-10T11:54:28,594 Created temporary directory: /tmp/pip-wheel-8x89ohd6 2023-09-10T11:54:28,597 Created temporary directory: /tmp/pip-ephem-wheel-cache-v5716akr 2023-09-10T11:54:28,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T11:54:28,624 2 location(s) to search for versions of parmed: 2023-09-10T11:54:28,624 * https://pypi.org/simple/parmed/ 2023-09-10T11:54:28,624 * https://www.piwheels.org/simple/parmed/ 2023-09-10T11:54:28,625 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-10T11:54:28,626 Getting page https://pypi.org/simple/parmed/ 2023-09-10T11:54:28,627 Found index url https://pypi.org/simple/ 2023-09-10T11:54:28,766 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-10T11:54:28,769 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-10T11:54:28,770 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-10T11:54:28,771 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-10T11:54:28,772 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-10T11:54:28,772 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-10T11:54:28,773 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-10T11:54:28,774 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-10T11:54:28,775 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-10T11:54:28,775 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-10T11:54:28,776 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-10T11:54:28,777 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-10T11:54:28,777 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-10T11:54:28,778 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-10T11:54:28,779 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-10T11:54:28,780 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-10T11:54:28,781 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-10T11:54:28,782 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-10T11:54:28,783 Found index url https://www.piwheels.org/simple/ 2023-09-10T11:54:33,821 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-10T11:54:33,869 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp35-cp35m-linux_armv6l.whl#sha256=5865d3138f2558b816d9dca1ee2b3f7fdab0f8860a37767eeebde3544c3ffab0 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,940 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp35-cp35m-linux_armv7l.whl#sha256=5865d3138f2558b816d9dca1ee2b3f7fdab0f8860a37767eeebde3544c3ffab0 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,941 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp37-cp37m-linux_armv7l.whl#sha256=8cd5f3d69097b934b7ee66a577dbed5393d2a6998be794bc350fedb675960e64 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,941 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp37-cp37m-linux_armv6l.whl#sha256=8cd5f3d69097b934b7ee66a577dbed5393d2a6998be794bc350fedb675960e64 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,942 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,943 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,943 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,944 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,945 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,946 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,947 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,947 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-10T11:54:33,948 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-10T11:54:33,948 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-10T11:54:33,978 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-10T11:54:34,006 Collecting parmed==3.0.3 2023-09-10T11:54:34,009 Created temporary directory: /tmp/pip-unpack-cqdvz1v4 2023-09-10T11:54:34,246 Downloading ParmEd-3.0.3.tar.gz (1.6 MB) 2023-09-10T11:54:35,119 Added parmed==3.0.3 from https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-gjou2y7x' 2023-09-10T11:54:35,121 Running setup.py (path:/tmp/pip-wheel-8x89ohd6/parmed_4fb1b48eeb104633b62fb07a9521f242/setup.py) egg_info for package parmed 2023-09-10T11:54:35,121 Created temporary directory: /tmp/pip-pip-egg-info-ds87edbh 2023-09-10T11:54:35,122 Preparing metadata (setup.py): started 2023-09-10T11:54:35,123 Running command python setup.py egg_info 2023-09-10T11:54:36,201 running egg_info 2023-09-10T11:54:36,203 creating /tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info 2023-09-10T11:54:36,227 writing /tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/PKG-INFO 2023-09-10T11:54:36,230 writing dependency_links to /tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/dependency_links.txt 2023-09-10T11:54:36,232 writing entry points to /tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/entry_points.txt 2023-09-10T11:54:36,234 writing top-level names to /tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/top_level.txt 2023-09-10T11:54:36,235 writing manifest file '/tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/SOURCES.txt' 2023-09-10T11:54:36,303 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-10T11:54:36,326 reading manifest file '/tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/SOURCES.txt' 2023-09-10T11:54:36,328 reading manifest template 'MANIFEST.in' 2023-09-10T11:54:36,349 writing manifest file '/tmp/pip-pip-egg-info-ds87edbh/ParmEd.egg-info/SOURCES.txt' 2023-09-10T11:54:36,460 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T11:54:36,463 Source in /tmp/pip-wheel-8x89ohd6/parmed_4fb1b48eeb104633b62fb07a9521f242 has version 3.0.3, which satisfies requirement parmed==3.0.3 from https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz 2023-09-10T11:54:36,464 Removed parmed==3.0.3 from https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-gjou2y7x' 2023-09-10T11:54:36,468 Created temporary directory: /tmp/pip-unpack-gw2hz9m1 2023-09-10T11:54:36,469 Created temporary directory: /tmp/pip-unpack-wnwxdmjm 2023-09-10T11:54:36,471 Building wheels for collected packages: parmed 2023-09-10T11:54:36,476 Created temporary directory: /tmp/pip-wheel-gwc1h80c 2023-09-10T11:54:36,476 Building wheel for parmed (setup.py): started 2023-09-10T11:54:36,478 Destination directory: /tmp/pip-wheel-gwc1h80c 2023-09-10T11:54:36,478 Running command python setup.py bdist_wheel 2023-09-10T11:54:37,502 running bdist_wheel 2023-09-10T11:54:37,597 running build 2023-09-10T11:54:37,598 running build_py 2023-09-10T11:54:37,602 creating build 2023-09-10T11:54:37,603 creating build/lib.linux-armv7l-cpython-311 2023-09-10T11:54:37,604 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,605 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,607 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,609 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,611 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,613 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,614 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,617 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,618 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,620 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,622 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,624 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,626 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,632 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-10T11:54:37,638 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,639 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,642 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,647 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,649 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,651 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,653 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,656 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,660 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,663 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,666 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,669 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,672 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-10T11:54:37,675 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T11:54:37,676 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T11:54:37,678 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T11:54:37,681 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-10T11:54:37,683 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,684 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,687 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,689 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,691 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,693 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-10T11:54:37,696 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,697 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,700 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,702 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,704 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,706 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,708 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,709 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,711 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,714 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,716 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,718 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,720 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-10T11:54:37,722 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,723 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,726 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,727 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,729 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,731 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,733 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-10T11:54:37,735 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,736 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,739 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,740 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,744 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,746 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-10T11:54:37,749 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,749 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T11:54:37,750 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T11:54:37,752 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T11:54:37,755 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T11:54:37,757 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-10T11:54:37,761 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T11:54:37,762 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T11:54:37,764 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-10T11:54:37,766 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T11:54:37,767 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T11:54:37,768 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-10T11:54:37,771 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,773 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,775 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,776 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,778 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,780 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,783 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-10T11:54:37,787 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,787 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,788 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,790 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,793 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,794 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,796 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,798 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,801 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,802 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,804 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,806 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,808 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-10T11:54:37,810 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,811 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,813 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,817 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,819 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,821 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,823 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-10T11:54:37,826 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,829 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,831 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,833 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,835 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,838 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,840 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,841 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-10T11:54:37,844 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,844 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,847 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,848 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,850 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,852 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-10T11:54:37,857 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,858 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,859 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,862 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,864 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,866 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,868 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,870 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,871 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,874 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,879 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,881 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,883 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-10T11:54:37,886 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T11:54:37,887 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T11:54:37,889 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-10T11:54:37,891 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,892 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,894 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,895 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,897 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,899 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,902 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-10T11:54:37,905 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T11:54:37,906 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T11:54:37,910 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T11:54:37,911 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-10T11:54:37,915 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-10T11:54:37,916 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-10T11:54:37,930 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-10T11:54:37,931 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.0.3' 2023-09-10T11:54:37,931 running build_ext 2023-09-10T11:54:38,437 building 'parmed.amber._rdparm' extension 2023-09-10T11:54:38,437 creating build/temp.linux-armv7l-cpython-311 2023-09-10T11:54:38,438 creating build/temp.linux-armv7l-cpython-311/src 2023-09-10T11:54:38,439 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-8x89ohd6/parmed_4fb1b48eeb104633b62fb07a9521f242/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-10T11:54:44,119 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-8x89ohd6/parmed_4fb1b48eeb104633b62fb07a9521f242/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-10T11:54:47,278 In file included from /usr/include/c++/12/vector:70, 2023-09-10T11:54:47,279 from src/readparm.h:8, 2023-09-10T11:54:47,279 from src/readparm.cpp:10: 2023-09-10T11:54:47,280 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-10T11:54:47,281 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-10T11:54:47,282 439 | vector<_Tp, _Alloc>:: 2023-09-10T11:54:47,282 | ^~~~~~~~~~~~~~~~~~~ 2023-09-10T11:54:48,365 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-10T11:54:48,366 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-10T11:54:48,367 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-10T11:54:48,368 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-10T11:54:48,494 In file included from /usr/include/c++/12/vector:64: 2023-09-10T11:54:48,494 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T11:54:48,495 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-10T11:54:48,496 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T11:54:48,496 1287 | _M_realloc_insert(end(), __x); 2023-09-10T11:54:48,497 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T11:54:48,498 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T11:54:48,498 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-10T11:54:48,499 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T11:54:48,499 1287 | _M_realloc_insert(end(), __x); 2023-09-10T11:54:48,500 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T11:54:48,501 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-10T11:54:48,501 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-10T11:54:48,502 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-10T11:54:48,502 1287 | _M_realloc_insert(end(), __x); 2023-09-10T11:54:48,503 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-10T11:54:50,253 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-10T11:54:50,555 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-10T11:54:50,555 !! 2023-09-10T11:54:50,556 ******************************************************************************** 2023-09-10T11:54:50,557 Please avoid running ``setup.py`` directly. 2023-09-10T11:54:50,557 Instead, use pypa/build, pypa/installer or other 2023-09-10T11:54:50,558 standards-based tools. 2023-09-10T11:54:50,559 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-10T11:54:50,559 ******************************************************************************** 2023-09-10T11:54:50,561 !! 2023-09-10T11:54:50,561 self.initialize_options() 2023-09-10T11:54:50,585 installing to build/bdist.linux-armv7l/wheel 2023-09-10T11:54:50,585 running install 2023-09-10T11:54:50,610 running install_lib 2023-09-10T11:54:50,636 creating build/bdist.linux-armv7l 2023-09-10T11:54:50,637 creating build/bdist.linux-armv7l/wheel 2023-09-10T11:54:50,638 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,640 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,641 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,644 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,646 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,648 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,651 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,653 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,655 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,657 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-10T11:54:50,660 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,661 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,663 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,666 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,668 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,670 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,673 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,676 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,678 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,680 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,682 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,685 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-10T11:54:50,687 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,690 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,692 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,694 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,697 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,699 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,701 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,704 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,705 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,707 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,709 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,712 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,714 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-10T11:54:50,717 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T11:54:50,718 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T11:54:50,720 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T11:54:50,723 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-10T11:54:50,725 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-10T11:54:50,726 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-10T11:54:50,731 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,732 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,735 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,738 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,740 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,742 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,744 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,747 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,750 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,753 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,756 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,757 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,760 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,762 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,764 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,765 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,767 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-10T11:54:50,769 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,773 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,776 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,779 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-10T11:54:50,800 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T11:54:50,801 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T11:54:50,803 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-10T11:54:50,805 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,807 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,810 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,811 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T11:54:50,813 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T11:54:50,816 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T11:54:50,818 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-10T11:54:50,820 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,823 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,825 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,829 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,832 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,834 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,837 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,840 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,842 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,848 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,852 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,855 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-10T11:54:50,858 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,859 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,862 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,864 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,866 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,868 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,871 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-10T11:54:50,874 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T11:54:50,875 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T11:54:50,877 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-10T11:54:50,879 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,881 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,882 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,884 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,886 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,888 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,890 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-10T11:54:50,894 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,895 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,897 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,900 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,903 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,905 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,907 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-10T11:54:50,910 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,911 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,914 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,916 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,919 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,921 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,924 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,926 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,928 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,931 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,934 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,936 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,938 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-10T11:54:50,941 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,943 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,944 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,947 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,948 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,952 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,954 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-10T11:54:50,957 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,962 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,963 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,965 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,968 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T11:54:50,969 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T11:54:50,970 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T11:54:50,972 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T11:54:50,975 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-10T11:54:50,977 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,979 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,981 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,983 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,985 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-10T11:54:50,989 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T11:54:50,990 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T11:54:50,992 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-10T11:54:50,994 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-10T11:54:50,998 running install_egg_info 2023-09-10T11:54:51,059 running egg_info 2023-09-10T11:54:51,082 writing ParmEd.egg-info/PKG-INFO 2023-09-10T11:54:51,085 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-10T11:54:51,087 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-10T11:54:51,088 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-10T11:54:51,125 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-10T11:54:51,149 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-10T11:54:51,159 reading manifest template 'MANIFEST.in' 2023-09-10T11:54:51,182 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-10T11:54:51,184 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.0.3-py3.11.egg-info 2023-09-10T11:54:51,194 running install_scripts 2023-09-10T11:54:51,245 creating build/bdist.linux-armv7l/wheel/ParmEd-3.0.3.dist-info/WHEEL 2023-09-10T11:54:51,248 creating '/tmp/pip-wheel-gwc1h80c/ParmEd-3.0.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-10T11:54:51,251 adding 'parmed/__init__.py' 2023-09-10T11:54:51,253 adding 'parmed/_version.py' 2023-09-10T11:54:51,254 adding 'parmed/constants.py' 2023-09-10T11:54:51,255 adding 'parmed/exceptions.py' 2023-09-10T11:54:51,258 adding 'parmed/geometry.py' 2023-09-10T11:54:51,261 adding 'parmed/parameters.py' 2023-09-10T11:54:51,264 adding 'parmed/periodic_table.py' 2023-09-10T11:54:51,266 adding 'parmed/residue.py' 2023-09-10T11:54:51,268 adding 'parmed/scripts.py' 2023-09-10T11:54:51,288 adding 'parmed/structure.py' 2023-09-10T11:54:51,291 adding 'parmed/symmetry.py' 2023-09-10T11:54:51,311 adding 'parmed/topologyobjects.py' 2023-09-10T11:54:51,314 adding 'parmed/vec3.py' 2023-09-10T11:54:51,316 adding 'parmed/amber/__init__.py' 2023-09-10T11:54:51,327 adding 'parmed/amber/_amberparm.py' 2023-09-10T11:54:51,332 adding 'parmed/amber/_chamberparm.py' 2023-09-10T11:54:51,492 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T11:54:51,504 adding 'parmed/amber/_tinkerparm.py' 2023-09-10T11:54:51,508 adding 'parmed/amber/amberformat.py' 2023-09-10T11:54:51,511 adding 'parmed/amber/asciicrd.py' 2023-09-10T11:54:51,514 adding 'parmed/amber/mask.py' 2023-09-10T11:54:51,517 adding 'parmed/amber/netcdffiles.py' 2023-09-10T11:54:51,520 adding 'parmed/amber/offlib.py' 2023-09-10T11:54:51,524 adding 'parmed/amber/parameters.py' 2023-09-10T11:54:51,525 adding 'parmed/amber/readparm.py' 2023-09-10T11:54:51,530 adding 'parmed/amber/titratable_residues.py' 2023-09-10T11:54:51,532 adding 'parmed/amber/mdin/__init__.py' 2023-09-10T11:54:51,534 adding 'parmed/amber/mdin/cntrl.py' 2023-09-10T11:54:51,535 adding 'parmed/amber/mdin/ewald.py' 2023-09-10T11:54:51,537 adding 'parmed/amber/mdin/mdin.py' 2023-09-10T11:54:51,539 adding 'parmed/amber/mdin/pb.py' 2023-09-10T11:54:51,540 adding 'parmed/amber/mdin/qmmm.py' 2023-09-10T11:54:51,542 adding 'parmed/charmm/__init__.py' 2023-09-10T11:54:51,543 adding 'parmed/charmm/_charmmfile.py' 2023-09-10T11:54:51,545 adding 'parmed/charmm/charmmcrds.py' 2023-09-10T11:54:51,551 adding 'parmed/charmm/parameters.py' 2023-09-10T11:54:51,555 adding 'parmed/charmm/psf.py' 2023-09-10T11:54:51,557 adding 'parmed/formats/__init__.py' 2023-09-10T11:54:51,560 adding 'parmed/formats/mol2.py' 2023-09-10T11:54:51,568 adding 'parmed/formats/pdb.py' 2023-09-10T11:54:51,570 adding 'parmed/formats/pqr.py' 2023-09-10T11:54:51,572 adding 'parmed/formats/psf.py' 2023-09-10T11:54:51,574 adding 'parmed/formats/registry.py' 2023-09-10T11:54:51,575 adding 'parmed/formats/sdf.py' 2023-09-10T11:54:51,579 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-10T11:54:51,581 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-10T11:54:51,583 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-10T11:54:51,584 adding 'parmed/formats/pdbx/__init__.py' 2023-09-10T11:54:51,586 adding 'parmed/gromacs/__init__.py' 2023-09-10T11:54:51,588 adding 'parmed/gromacs/_cpp.py' 2023-09-10T11:54:51,590 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-10T11:54:51,592 adding 'parmed/gromacs/gromacsgro.py' 2023-09-10T11:54:51,602 adding 'parmed/gromacs/gromacstop.py' 2023-09-10T11:54:51,605 adding 'parmed/modeller/__init__.py' 2023-09-10T11:54:51,609 adding 'parmed/modeller/residue.py' 2023-09-10T11:54:51,611 adding 'parmed/modeller/standardtemplates.py' 2023-09-10T11:54:51,619 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-10T11:54:51,622 adding 'parmed/namd/__init__.py' 2023-09-10T11:54:51,623 adding 'parmed/namd/namdbinfiles.py' 2023-09-10T11:54:51,625 adding 'parmed/openmm/__init__.py' 2023-09-10T11:54:51,630 adding 'parmed/openmm/parameters.py' 2023-09-10T11:54:51,634 adding 'parmed/openmm/reporters.py' 2023-09-10T11:54:51,637 adding 'parmed/openmm/topsystem.py' 2023-09-10T11:54:51,639 adding 'parmed/openmm/utils.py' 2023-09-10T11:54:51,640 adding 'parmed/openmm/xmlfile.py' 2023-09-10T11:54:51,642 adding 'parmed/rdkit/__init__.py' 2023-09-10T11:54:51,643 adding 'parmed/rdkit/rdkit.py' 2023-09-10T11:54:51,645 adding 'parmed/rosetta/__init__.py' 2023-09-10T11:54:51,646 adding 'parmed/rosetta/pose.py' 2023-09-10T11:54:51,648 adding 'parmed/tinker/__init__.py' 2023-09-10T11:54:51,650 adding 'parmed/tinker/parameterfile.py' 2023-09-10T11:54:51,653 adding 'parmed/tinker/system.py' 2023-09-10T11:54:51,655 adding 'parmed/tinker/tinkerfiles.py' 2023-09-10T11:54:51,657 adding 'parmed/tinker/topologyobjects.py' 2023-09-10T11:54:51,659 adding 'parmed/tools/__init__.py' 2023-09-10T11:54:51,680 adding 'parmed/tools/actions.py' 2023-09-10T11:54:51,683 adding 'parmed/tools/add1264.py' 2023-09-10T11:54:51,685 adding 'parmed/tools/addljtype.py' 2023-09-10T11:54:51,687 adding 'parmed/tools/argumentlist.py' 2023-09-10T11:54:51,688 adding 'parmed/tools/changeradii.py' 2023-09-10T11:54:51,690 adding 'parmed/tools/checkvalidity.py' 2023-09-10T11:54:51,692 adding 'parmed/tools/coarsegrain.py' 2023-09-10T11:54:51,694 adding 'parmed/tools/exceptions.py' 2023-09-10T11:54:51,696 adding 'parmed/tools/logos.py' 2023-09-10T11:54:51,699 adding 'parmed/tools/parmed_cmd.py' 2023-09-10T11:54:51,700 adding 'parmed/tools/parmlist.py' 2023-09-10T11:54:51,702 adding 'parmed/tools/gui/__init__.py' 2023-09-10T11:54:51,706 adding 'parmed/tools/gui/_guiactions.py' 2023-09-10T11:54:51,708 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-10T11:54:51,709 adding 'parmed/tools/gui/guiactions.py' 2023-09-10T11:54:51,710 adding 'parmed/tools/gui/guifiletools.py' 2023-09-10T11:54:51,712 adding 'parmed/tools/gui/guitools.py' 2023-09-10T11:54:51,713 adding 'parmed/tools/simulations/__init__.py' 2023-09-10T11:54:51,718 adding 'parmed/tools/simulations/openmm.py' 2023-09-10T11:54:51,720 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-10T11:54:51,722 adding 'parmed/unit/__init__.py' 2023-09-10T11:54:51,723 adding 'parmed/unit/basedimension.py' 2023-09-10T11:54:51,725 adding 'parmed/unit/baseunit.py' 2023-09-10T11:54:51,726 adding 'parmed/unit/constants.py' 2023-09-10T11:54:51,728 adding 'parmed/unit/mymatrix.py' 2023-09-10T11:54:51,730 adding 'parmed/unit/prefix.py' 2023-09-10T11:54:51,734 adding 'parmed/unit/quantity.py' 2023-09-10T11:54:51,735 adding 'parmed/unit/standard_dimensions.py' 2023-09-10T11:54:51,738 adding 'parmed/unit/unit.py' 2023-09-10T11:54:51,741 adding 'parmed/unit/unit_definitions.py' 2023-09-10T11:54:51,742 adding 'parmed/unit/unit_math.py' 2023-09-10T11:54:51,743 adding 'parmed/unit/unit_operators.py' 2023-09-10T11:54:51,746 adding 'parmed/utils/__init__.py' 2023-09-10T11:54:51,747 adding 'parmed/utils/decorators.py' 2023-09-10T11:54:51,748 adding 'parmed/utils/io.py' 2023-09-10T11:54:51,753 adding 'parmed/utils/netcdf.py' 2023-09-10T11:54:51,754 adding 'parmed/utils/pairlist.py' 2023-09-10T11:54:51,756 adding 'parmed/utils/pandautils.py' 2023-09-10T11:54:51,760 adding 'parmed/utils/six.py' 2023-09-10T11:54:51,761 adding 'parmed/utils/timer.py' 2023-09-10T11:54:51,763 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-10T11:54:51,764 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-10T11:54:51,765 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-10T11:54:51,767 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-10T11:54:51,768 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-10T11:54:51,770 adding 'parmed/utils/fortranformat/_input.py' 2023-09-10T11:54:51,772 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-10T11:54:51,773 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-10T11:54:51,776 adding 'parmed/utils/fortranformat/_output.py' 2023-09-10T11:54:51,778 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-10T11:54:51,780 adding 'parmed/utils/fortranformat/config.py' 2023-09-10T11:54:51,781 adding 'ParmEd-3.0.3.dist-info/METADATA' 2023-09-10T11:54:51,782 adding 'ParmEd-3.0.3.dist-info/WHEEL' 2023-09-10T11:54:51,783 adding 'ParmEd-3.0.3.dist-info/entry_points.txt' 2023-09-10T11:54:51,784 adding 'ParmEd-3.0.3.dist-info/top_level.txt' 2023-09-10T11:54:51,786 adding 'ParmEd-3.0.3.dist-info/RECORD' 2023-09-10T11:54:51,797 removing build/bdist.linux-armv7l/wheel 2023-09-10T11:54:51,979 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-10T11:54:51,991 Created wheel for parmed: filename=ParmEd-3.0.3-cp311-cp311-linux_armv7l.whl size=863852 sha256=93252e9d5aa0217d17a44dbaeba5198a47695a250938ea9dd930ff386537c15a 2023-09-10T11:54:51,992 Stored in directory: /tmp/pip-ephem-wheel-cache-v5716akr/wheels/39/37/87/cbf4010f1ce6f3246c4a41729cdddbfe8715cf70a419dacc06 2023-09-10T11:54:52,005 Successfully built parmed 2023-09-10T11:54:52,029 Removed build tracker: '/tmp/pip-build-tracker-gjou2y7x'