2023-09-10T12:03:00,883 Created temporary directory: /tmp/pip-build-tracker-npfzn3v6
2023-09-10T12:03:00,885 Initialized build tracking at /tmp/pip-build-tracker-npfzn3v6
2023-09-10T12:03:00,885 Created build tracker: /tmp/pip-build-tracker-npfzn3v6
2023-09-10T12:03:00,885 Entered build tracker: /tmp/pip-build-tracker-npfzn3v6
2023-09-10T12:03:00,886 Created temporary directory: /tmp/pip-wheel-r15owa9l
2023-09-10T12:03:00,890 Created temporary directory: /tmp/pip-ephem-wheel-cache-3d1b8p_6
2023-09-10T12:03:00,913 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-10T12:03:00,917 2 location(s) to search for versions of uta-align:
2023-09-10T12:03:00,917 * https://pypi.org/simple/uta-align/
2023-09-10T12:03:00,917 * https://www.piwheels.org/simple/uta-align/
2023-09-10T12:03:00,918 Fetching project page and analyzing links: https://pypi.org/simple/uta-align/
2023-09-10T12:03:00,919 Getting page https://pypi.org/simple/uta-align/
2023-09-10T12:03:00,920 Found index url https://pypi.org/simple/
2023-09-10T12:03:01,186 Fetched page https://pypi.org/simple/uta-align/ as application/vnd.pypi.simple.v1+json
2023-09-10T12:03:01,192   Found link https://files.pythonhosted.org/packages/60/a2/47df4fbbbf9800199f0b9363ba2b02c7f234d074ad2693d09cb499a18b2f/uta-align-0.0.1dev-c749ca8b22a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.0.1dev-c749ca8b22a0
2023-09-10T12:03:01,192   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/08/ed/16116fd416d69101c3cda7290be8a3a4f82f9d3c9e7902c783633ed78f21/uta_align-0.0.1dev_c749ca8b22a0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,193   Found link https://files.pythonhosted.org/packages/c5/c4/e4c65f29cdbcec6ec0269ae305bba6b2a228ff67699de315154dcda99f68/uta-align-0.1.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.0
2023-09-10T12:03:01,194   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/50/0cf3cc125b6ba7ad99012bedf436c15e56cdf19c677edd4d25f24c51cfe2/uta_align-0.1.0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,194   Found link https://files.pythonhosted.org/packages/f5/7f/c7c7d3043fa52fe7d6c8d3a870409f9cc9126ca11c113ca05bcd889a123d/uta-align-0.1.2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.2
2023-09-10T12:03:01,195   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/fe/38/a811e7ea2cfa3d1447302b1e0bf650a6b7394c85a308416ae9acbde5c0b9/uta_align-0.1.2-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,196   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/ef/d709856489d8883fa96dfa2732a7cdf33a2b6eb7319e2d8f245e1fbe299a/uta_align-0.1.4-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,196   Found link https://files.pythonhosted.org/packages/4f/98/6c282d715088d99d0e4ad4574bd7ae06ae0157f9b4c94843bf215a2b13fd/uta-align-0.1.5.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.5
2023-09-10T12:03:01,197   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/86/7a17a92e6730db93d570dde8d4f6ed2ebde235a4a2b1067fe41aa73e6d56/uta_align-0.1.5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,198   Found link https://files.pythonhosted.org/packages/20/a0/944d267127f1cc2b188f8afbc3684232ebd576ccad97cec399179f29ada3/uta-align-0.1.6.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.6
2023-09-10T12:03:01,198   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/79/ab5ccbbf4854c8dc038871306dccb76e18680581267e876528f829089b6a/uta_align-0.1.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,199   Found link https://files.pythonhosted.org/packages/42/c0/9999b551deffc63c27066cffdac0c2bdd6413d3741b775a6f0441ce82c94/uta-align-0.1.7.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.7
2023-09-10T12:03:01,200   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/fc/a620e23d04f03f60881831b48f4e05e3fbd8b8cd9c797b06245f7783d8b4/uta_align-0.1.7-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,200   Found link https://files.pythonhosted.org/packages/f1/f2/ae2c44e1009a4c94be0a228a17ba41327cbb14ca4d205b9d30a6d03907e0/uta-align-0.1.8.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.8
2023-09-10T12:03:01,201   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/e1/dfb0593828e024c1a8c1b40539a892d613a52221deec59e1916e6271c49d/uta_align-0.1.8-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,202   Found link https://files.pythonhosted.org/packages/53/9a/f8e1cab0dc5e7f59277cad128fcead3897c03c74c743b6ef05927a49914e/uta-align-0.1.9.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.9
2023-09-10T12:03:01,202   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/12/b6/bedbe1aa646f76d72de5a2e269b0771d04704ab97be399ebe34a7b4a31ac/uta_align-0.1.9-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,203   Found link https://files.pythonhosted.org/packages/94/6b/0b73dc6d3391468e9d5229a262129763672296d41f1a26d4f128c66a99dd/uta-align-0.1.10.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.10
2023-09-10T12:03:01,203   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/ec/2ec104fea2c5ad78e85b77df92d92a77c75fca18b9fd5efe75e970c4d6ed/uta_align-0.1.10-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,204   Found link https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.11
2023-09-10T12:03:01,204   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/dd/a7/46496d2d48416e55e45b4f7a77103d53a80f9165552d81ffba27e51ff99b/uta_align-0.1.11-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,205   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/7c/ffe50738dd367f7378193f892584392015f4b62aa3ebce7ff721b0cddbc4/uta_align-0.1.11-py3.6-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-10T12:03:01,206   Found link https://files.pythonhosted.org/packages/0f/a2/e6bdd37d746c294c7a6374664078ecf2d34677b52c5267ff0576f669eb15/uta-align-0.2.0a1.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a1
2023-09-10T12:03:01,206   Found link https://files.pythonhosted.org/packages/7c/07/3d0483101728198e619f9d45552d2d50dc90fc2937964a899e6fe3908687/uta-align-0.2.0a2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a2
2023-09-10T12:03:01,207   Found link https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a3
2023-09-10T12:03:01,208   Found link https://files.pythonhosted.org/packages/64/bc/5306c731e7d4d304e9d1f7fee2a8fa1d79640626ccaac9f9df660078893c/uta-align-0.2.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0
2023-09-10T12:03:01,209 Fetching project page and analyzing links: https://www.piwheels.org/simple/uta-align/
2023-09-10T12:03:01,209 Getting page https://www.piwheels.org/simple/uta-align/
2023-09-10T12:03:01,211 Found index url https://www.piwheels.org/simple/
2023-09-10T12:03:07,295 Fetched page https://www.piwheels.org/simple/uta-align/ as text/html
2023-09-10T12:03:07,313   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv6l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,314   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv7l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,315   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,317   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,317   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,318   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,319   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,320   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,321   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,322   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,323   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,324   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,325   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,326   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,327   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv6l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,328   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv7l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,329   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv6l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,330   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv7l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,331   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv6l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,332   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv7l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,333   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv6l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,334   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv7l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,334   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv6l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,335   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv7l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,336   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv6l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,337   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv7l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2023-09-10T12:03:07,338 Skipping link: not a file: https://www.piwheels.org/simple/uta-align/
2023-09-10T12:03:07,339 Skipping link: not a file: https://pypi.org/simple/uta-align/
2023-09-10T12:03:07,372 Given no hashes to check 1 links for project 'uta-align': discarding no candidates
2023-09-10T12:03:07,401 Collecting uta-align==0.1.11
2023-09-10T12:03:07,404   Created temporary directory: /tmp/pip-unpack-2tdvieon
2023-09-10T12:03:07,673   Downloading uta-align-0.1.11.tar.gz (73 kB)
2023-09-10T12:03:07,813   Added uta-align==0.1.11 from https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz to build tracker '/tmp/pip-build-tracker-npfzn3v6'
2023-09-10T12:03:07,815   Running setup.py (path:/tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/setup.py) egg_info for package uta-align
2023-09-10T12:03:07,816   Created temporary directory: /tmp/pip-pip-egg-info-0on1fzac
2023-09-10T12:03:07,816   Preparing metadata (setup.py): started
2023-09-10T12:03:07,818   Running command python setup.py egg_info
2023-09-10T12:03:09,411   error: externally-managed-environment

2023-09-10T12:03:09,412   × This environment is externally managed
2023-09-10T12:03:09,412   ╰─> To install Python packages system-wide, try apt install
2023-09-10T12:03:09,413       python3-xyz, where xyz is the package you are trying to
2023-09-10T12:03:09,413       install.

2023-09-10T12:03:09,414       If you wish to install a non-Debian-packaged Python package,
2023-09-10T12:03:09,415       create a virtual environment using python3 -m venv path/to/venv.
2023-09-10T12:03:09,415       Then use path/to/venv/bin/python and path/to/venv/bin/pip. Make
2023-09-10T12:03:09,416       sure you have python3-full installed.

2023-09-10T12:03:09,417       If you wish to install a non-Debian packaged Python application,
2023-09-10T12:03:09,418       it may be easiest to use pipx install xyz, which will manage a
2023-09-10T12:03:09,418       virtual environment for you. Make sure you have pipx installed.

2023-09-10T12:03:09,419       See /usr/share/doc/python3.11/README.venv for more information.

2023-09-10T12:03:09,420   note: If you believe this is a mistake, please contact your Python installation or OS distribution provider. You can override this, at the risk of breaking your Python installation or OS, by passing --break-system-packages.
2023-09-10T12:03:09,421   hint: See PEP 668 for the detailed specification.
2023-09-10T12:03:10,526   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-10T12:03:10,527   !!

2023-09-10T12:03:10,528           ********************************************************************************
2023-09-10T12:03:10,528           Requirements should be satisfied by a PEP 517 installer.
2023-09-10T12:03:10,529           If you are using pip, you can try `pip install --use-pep517`.
2023-09-10T12:03:10,529           ********************************************************************************

2023-09-10T12:03:10,531   !!
2023-09-10T12:03:10,531     dist.fetch_build_eggs(dist.setup_requires)
2023-09-10T12:03:13,664   [WARNING] pysam not found, attempting to install using a raw "pip install" call!
2023-09-10T12:03:13,665   running egg_info
2023-09-10T12:03:13,666   creating /tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info
2023-09-10T12:03:13,694   writing /tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/PKG-INFO
2023-09-10T12:03:13,698   writing dependency_links to /tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/dependency_links.txt
2023-09-10T12:03:13,699   writing requirements to /tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/requires.txt
2023-09-10T12:03:13,701   writing top-level names to /tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/top_level.txt
2023-09-10T12:03:13,702   writing manifest file '/tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/SOURCES.txt'
2023-09-10T12:03:13,856   listing git files failed - pretending there aren't any
2023-09-10T12:03:13,862   reading manifest file '/tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/SOURCES.txt'
2023-09-10T12:03:13,863   adding license file 'LICENSE.txt'
2023-09-10T12:03:13,865   writing manifest file '/tmp/pip-pip-egg-info-0on1fzac/uta_align.egg-info/SOURCES.txt'
2023-09-10T12:03:13,983   Preparing metadata (setup.py): finished with status 'done'
2023-09-10T12:03:13,987   Source in /tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7 has version 0.1.11, which satisfies requirement uta-align==0.1.11 from https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz
2023-09-10T12:03:13,988   Removed uta-align==0.1.11 from https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz from build tracker '/tmp/pip-build-tracker-npfzn3v6'
2023-09-10T12:03:13,992 Created temporary directory: /tmp/pip-unpack-_3q7ogxe
2023-09-10T12:03:13,993 Created temporary directory: /tmp/pip-unpack-q08p8hu6
2023-09-10T12:03:13,999 Building wheels for collected packages: uta-align
2023-09-10T12:03:14,004   Created temporary directory: /tmp/pip-wheel-lgvtmu1o
2023-09-10T12:03:14,004   Building wheel for uta-align (setup.py): started
2023-09-10T12:03:14,005   Destination directory: /tmp/pip-wheel-lgvtmu1o
2023-09-10T12:03:14,006   Running command python setup.py bdist_wheel
2023-09-10T12:03:14,424   [WARNING] pysam not found, attempting to install using a raw "pip install" call!
2023-09-10T12:03:15,585   error: externally-managed-environment

2023-09-10T12:03:15,586   × This environment is externally managed
2023-09-10T12:03:15,586   ╰─> To install Python packages system-wide, try apt install
2023-09-10T12:03:15,587       python3-xyz, where xyz is the package you are trying to
2023-09-10T12:03:15,588       install.

2023-09-10T12:03:15,589       If you wish to install a non-Debian-packaged Python package,
2023-09-10T12:03:15,589       create a virtual environment using python3 -m venv path/to/venv.
2023-09-10T12:03:15,590       Then use path/to/venv/bin/python and path/to/venv/bin/pip. Make
2023-09-10T12:03:15,590       sure you have python3-full installed.

2023-09-10T12:03:15,592       If you wish to install a non-Debian packaged Python application,
2023-09-10T12:03:15,592       it may be easiest to use pipx install xyz, which will manage a
2023-09-10T12:03:15,593       virtual environment for you. Make sure you have pipx installed.

2023-09-10T12:03:15,594       See /usr/share/doc/python3.11/README.venv for more information.

2023-09-10T12:03:15,595   note: If you believe this is a mistake, please contact your Python installation or OS distribution provider. You can override this, at the risk of breaking your Python installation or OS, by passing --break-system-packages.
2023-09-10T12:03:15,595   hint: See PEP 668 for the detailed specification.
2023-09-10T12:03:16,678   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-10T12:03:16,678   !!

2023-09-10T12:03:16,680           ********************************************************************************
2023-09-10T12:03:16,680           Requirements should be satisfied by a PEP 517 installer.
2023-09-10T12:03:16,681           If you are using pip, you can try `pip install --use-pep517`.
2023-09-10T12:03:16,682           ********************************************************************************

2023-09-10T12:03:16,683   !!
2023-09-10T12:03:16,684     dist.fetch_build_eggs(dist.setup_requires)
2023-09-10T12:03:17,333   running bdist_wheel
2023-09-10T12:03:17,414   running build
2023-09-10T12:03:17,415   running build_py
2023-09-10T12:03:17,444   creating build
2023-09-10T12:03:17,445   creating build/lib.linux-armv7l-cpython-311
2023-09-10T12:03:17,446   creating build/lib.linux-armv7l-cpython-311/uta_align
2023-09-10T12:03:17,447   copying uta_align/__init__.py -> build/lib.linux-armv7l-cpython-311/uta_align
2023-09-10T12:03:17,449   creating build/lib.linux-armv7l-cpython-311/uta_align/align
2023-09-10T12:03:17,450   copying uta_align/align/__init__.py -> build/lib.linux-armv7l-cpython-311/uta_align/align
2023-09-10T12:03:17,453   running build_ext
2023-09-10T12:03:17,458   Traceback (most recent call last):
2023-09-10T12:03:17,459     File "<string>", line 2, in <module>
2023-09-10T12:03:17,459     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-10T12:03:17,460     File "/tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/setup.py", line 85, in <module>
2023-09-10T12:03:17,460       setup(
2023-09-10T12:03:17,461     File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup
2023-09-10T12:03:17,461       return distutils.core.setup(**attrs)
2023-09-10T12:03:17,462              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T12:03:17,463     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup
2023-09-10T12:03:17,463       return run_commands(dist)
2023-09-10T12:03:17,464              ^^^^^^^^^^^^^^^^^^
2023-09-10T12:03:17,465     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-09-10T12:03:17,465       dist.run_commands()
2023-09-10T12:03:17,466     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-09-10T12:03:17,466       self.run_command(cmd)
2023-09-10T12:03:17,467     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-10T12:03:17,467       super().run_command(command)
2023-09-10T12:03:17,468     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-10T12:03:17,468       cmd_obj.run()
2023-09-10T12:03:17,469     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 325, in run
2023-09-10T12:03:17,469       self.run_command("build")
2023-09-10T12:03:17,469     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-10T12:03:17,470       self.distribution.run_command(command)
2023-09-10T12:03:17,470     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-10T12:03:17,471       super().run_command(command)
2023-09-10T12:03:17,472     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-10T12:03:17,472       cmd_obj.run()
2023-09-10T12:03:17,473     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run
2023-09-10T12:03:17,473       self.run_command(cmd_name)
2023-09-10T12:03:17,474     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-10T12:03:17,474       self.distribution.run_command(command)
2023-09-10T12:03:17,475     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-10T12:03:17,476       super().run_command(command)
2023-09-10T12:03:17,477     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-10T12:03:17,478       cmd_obj.run()
2023-09-10T12:03:17,479     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build_ext.py", line 345, in run
2023-09-10T12:03:17,480       self.build_extensions()
2023-09-10T12:03:17,481     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build_ext.py", line 467, in build_extensions
2023-09-10T12:03:17,482       self._build_extensions_serial()
2023-09-10T12:03:17,483     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build_ext.py", line 493, in _build_extensions_serial
2023-09-10T12:03:17,483       self.build_extension(ext)
2023-09-10T12:03:17,484     File "/tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/cy_distribute.py", line 39, in build_extension
2023-09-10T12:03:17,485       ext._init_func(ext)
2023-09-10T12:03:17,486     File "/tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/setup.py", line 72, in pysam_incl
2023-09-10T12:03:17,487       import pysam
2023-09-10T12:03:17,488   ModuleNotFoundError: No module named 'pysam'
2023-09-10T12:03:17,592   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-10T12:03:17,605   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-10T12:03:17,605   exec(compile('"'"''"'"''"'"'
2023-09-10T12:03:17,605   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-10T12:03:17,605   #
2023-09-10T12:03:17,605   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-10T12:03:17,605   #   import from `distutils.core` to work with newer packaging standards.
2023-09-10T12:03:17,605   # - It provides a clear error message when setuptools is not installed.
2023-09-10T12:03:17,605   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-10T12:03:17,605   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-10T12:03:17,605   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-10T12:03:17,605   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-10T12:03:17,605   import os, sys, tokenize
2023-09-10T12:03:17,605   
2023-09-10T12:03:17,605   try:
2023-09-10T12:03:17,605       import setuptools
2023-09-10T12:03:17,605   except ImportError as error:
2023-09-10T12:03:17,605       print(
2023-09-10T12:03:17,605           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-10T12:03:17,605           "the build environment.",
2023-09-10T12:03:17,605           file=sys.stderr,
2023-09-10T12:03:17,605       )
2023-09-10T12:03:17,605       sys.exit(1)
2023-09-10T12:03:17,605   
2023-09-10T12:03:17,605   __file__ = %r
2023-09-10T12:03:17,605   sys.argv[0] = __file__
2023-09-10T12:03:17,605   
2023-09-10T12:03:17,605   if os.path.exists(__file__):
2023-09-10T12:03:17,605       filename = __file__
2023-09-10T12:03:17,605       with tokenize.open(__file__) as f:
2023-09-10T12:03:17,605           setup_py_code = f.read()
2023-09-10T12:03:17,605   else:
2023-09-10T12:03:17,605       filename = "<auto-generated setuptools caller>"
2023-09-10T12:03:17,605       setup_py_code = "from setuptools import setup; setup()"
2023-09-10T12:03:17,605   
2023-09-10T12:03:17,605   exec(compile(setup_py_code, filename, "exec"))
2023-09-10T12:03:17,605   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-lgvtmu1o[/]
2023-09-10T12:03:17,606   [bold magenta]cwd[/]: /tmp/pip-wheel-r15owa9l/uta-align_0e0e276fbc7a4e03ba7951ea862c5cb7/
2023-09-10T12:03:17,607   Building wheel for uta-align (setup.py): finished with status 'error'
2023-09-10T12:03:17,608   ERROR: Failed building wheel for uta-align
2023-09-10T12:03:17,609   Running setup.py clean for uta-align
2023-09-10T12:03:17,611   Running command python setup.py clean
2023-09-10T12:03:18,033   [WARNING] pysam not found, attempting to install using a raw "pip install" call!
2023-09-10T12:03:19,184   error: externally-managed-environment

2023-09-10T12:03:19,185   × This environment is externally managed
2023-09-10T12:03:19,186   ╰─> To install Python packages system-wide, try apt install
2023-09-10T12:03:19,187       python3-xyz, where xyz is the package you are trying to
2023-09-10T12:03:19,187       install.

2023-09-10T12:03:19,188       If you wish to install a non-Debian-packaged Python package,
2023-09-10T12:03:19,189       create a virtual environment using python3 -m venv path/to/venv.
2023-09-10T12:03:19,189       Then use path/to/venv/bin/python and path/to/venv/bin/pip. Make
2023-09-10T12:03:19,190       sure you have python3-full installed.

2023-09-10T12:03:19,191       If you wish to install a non-Debian packaged Python application,
2023-09-10T12:03:19,191       it may be easiest to use pipx install xyz, which will manage a
2023-09-10T12:03:19,192       virtual environment for you. Make sure you have pipx installed.

2023-09-10T12:03:19,193       See /usr/share/doc/python3.11/README.venv for more information.

2023-09-10T12:03:19,194   note: If you believe this is a mistake, please contact your Python installation or OS distribution provider. You can override this, at the risk of breaking your Python installation or OS, by passing --break-system-packages.
2023-09-10T12:03:19,195   hint: See PEP 668 for the detailed specification.
2023-09-10T12:03:20,254   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-09-10T12:03:20,255   !!

2023-09-10T12:03:20,256           ********************************************************************************
2023-09-10T12:03:20,257           Requirements should be satisfied by a PEP 517 installer.
2023-09-10T12:03:20,257           If you are using pip, you can try `pip install --use-pep517`.
2023-09-10T12:03:20,258           ********************************************************************************

2023-09-10T12:03:20,259   !!
2023-09-10T12:03:20,260     dist.fetch_build_eggs(dist.setup_requires)
2023-09-10T12:03:20,886   running clean
2023-09-10T12:03:20,939   removing 'build/lib.linux-armv7l-cpython-311' (and everything under it)
2023-09-10T12:03:20,942   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-10T12:03:20,942   'build/scripts-3.11' does not exist -- can't clean it
2023-09-10T12:03:20,943   removing 'build'
2023-09-10T12:03:21,058 Failed to build uta-align
2023-09-10T12:03:21,060 ERROR: Failed to build one or more wheels
2023-09-10T12:03:21,061 Exception information:
2023-09-10T12:03:21,061 Traceback (most recent call last):
2023-09-10T12:03:21,061   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-10T12:03:21,061     status = run_func(*args)
2023-09-10T12:03:21,061              ^^^^^^^^^^^^^^^
2023-09-10T12:03:21,061   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-10T12:03:21,061     return func(self, options, args)
2023-09-10T12:03:21,061            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T12:03:21,061   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-10T12:03:21,061     raise CommandError("Failed to build one or more wheels")
2023-09-10T12:03:21,061 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-10T12:03:21,064 Removed build tracker: '/tmp/pip-build-tracker-npfzn3v6'