2023-09-10T13:49:11,391 Created temporary directory: /tmp/pip-build-tracker-f6zzdli4 2023-09-10T13:49:11,393 Initialized build tracking at /tmp/pip-build-tracker-f6zzdli4 2023-09-10T13:49:11,393 Created build tracker: /tmp/pip-build-tracker-f6zzdli4 2023-09-10T13:49:11,394 Entered build tracker: /tmp/pip-build-tracker-f6zzdli4 2023-09-10T13:49:11,395 Created temporary directory: /tmp/pip-wheel-lzd3kbw4 2023-09-10T13:49:11,398 Created temporary directory: /tmp/pip-ephem-wheel-cache-u60wyr0m 2023-09-10T13:49:11,419 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T13:49:11,423 2 location(s) to search for versions of mikado: 2023-09-10T13:49:11,423 * https://pypi.org/simple/mikado/ 2023-09-10T13:49:11,423 * https://www.piwheels.org/simple/mikado/ 2023-09-10T13:49:11,424 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2023-09-10T13:49:11,425 Getting page https://pypi.org/simple/mikado/ 2023-09-10T13:49:11,426 Found index url https://pypi.org/simple/ 2023-09-10T13:49:11,568 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2023-09-10T13:49:11,574 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2023-09-10T13:49:11,575 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2023-09-10T13:49:11,575 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2023-09-10T13:49:11,576 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2023-09-10T13:49:11,577 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2023-09-10T13:49:11,577 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2023-09-10T13:49:11,578 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2023-09-10T13:49:11,579 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2023-09-10T13:49:11,579 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2023-09-10T13:49:11,580 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2023-09-10T13:49:11,581 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2023-09-10T13:49:11,581 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2023-09-10T13:49:11,582 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2023-09-10T13:49:11,583 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2023-09-10T13:49:11,584 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2023-09-10T13:49:11,585 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2023-09-10T13:49:11,586 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2023-09-10T13:49:11,587 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2023-09-10T13:49:11,588 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2023-09-10T13:49:11,589 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2023-09-10T13:49:11,589 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2023-09-10T13:49:11,590 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2023-09-10T13:49:11,591 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2023-09-10T13:49:11,592 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2023-09-10T13:49:11,592 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2023-09-10T13:49:11,593 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2023-09-10T13:49:11,594 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2023-09-10T13:49:11,595 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2023-09-10T13:49:11,596 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2023-09-10T13:49:11,597 Getting page https://www.piwheels.org/simple/mikado/ 2023-09-10T13:49:11,598 Found index url https://www.piwheels.org/simple/ 2023-09-10T13:49:12,654 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2023-09-10T13:49:12,711 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,712 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,713 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,714 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,715 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,716 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,716 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,717 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,718 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,719 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,719 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,720 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,721 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,722 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,723 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,724 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,725 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,726 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,727 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,727 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,728 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,729 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,730 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,731 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,732 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,732 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,733 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,734 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:49:12,735 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2023-09-10T13:49:12,736 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,767 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,768 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,768 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,769 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,771 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,771 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,772 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,773 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,773 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,774 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,774 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,775 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,776 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,776 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,777 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,777 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,778 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,778 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,779 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,779 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,780 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,781 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,783 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,784 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,784 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,785 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,787 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,787 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,788 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,788 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,791 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,791 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,792 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,792 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:49:12,793 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2023-09-10T13:49:12,793 Skipping link: not a file: https://pypi.org/simple/mikado/ 2023-09-10T13:49:12,815 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2023-09-10T13:49:12,833 Collecting mikado==1.2.1 2023-09-10T13:49:12,836 Created temporary directory: /tmp/pip-unpack-23wylnfz 2023-09-10T13:49:13,066 Downloading Mikado-1.2.1.tar.gz (17.0 MB) 2023-09-10T13:49:18,483 Added mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-f6zzdli4' 2023-09-10T13:49:18,486 Running setup.py (path:/tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7/setup.py) egg_info for package mikado 2023-09-10T13:49:18,487 Created temporary directory: /tmp/pip-pip-egg-info-gq_qha6j 2023-09-10T13:49:18,488 Preparing metadata (setup.py): started 2023-09-10T13:49:18,489 Running command python setup.py egg_info 2023-09-10T13:49:20,687 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7/Mikado/scales/contrast.pxd 2023-09-10T13:49:20,687 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:49:21,516 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7/Mikado/scales/f1.pxd 2023-09-10T13:49:21,517 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:49:21,600 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7/Mikado/utilities/intervaltree.pyx 2023-09-10T13:49:21,601 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:49:22,650 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7/Mikado/utilities/overlap.pxd 2023-09-10T13:49:22,650 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:49:22,775 Compiling Mikado/utilities/overlap.pyx because it changed. 2023-09-10T13:49:22,776 Compiling Mikado/scales/f1.pyx because it changed. 2023-09-10T13:49:22,776 Compiling Mikado/scales/contrast.pyx because it changed. 2023-09-10T13:49:22,777 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2023-09-10T13:49:22,777 [1/4] Cythonizing Mikado/scales/contrast.pyx 2023-09-10T13:49:22,778 [2/4] Cythonizing Mikado/scales/f1.pyx 2023-09-10T13:49:22,778 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2023-09-10T13:49:22,779 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2023-09-10T13:49:23,253 running egg_info 2023-09-10T13:49:23,254 creating /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info 2023-09-10T13:49:23,280 writing /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/PKG-INFO 2023-09-10T13:49:23,285 writing dependency_links to /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/dependency_links.txt 2023-09-10T13:49:23,286 writing entry points to /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/entry_points.txt 2023-09-10T13:49:23,290 writing requirements to /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/requires.txt 2023-09-10T13:49:23,291 writing top-level names to /tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/top_level.txt 2023-09-10T13:49:23,292 writing manifest file '/tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:49:23,440 reading manifest file '/tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:49:23,442 reading manifest template 'MANIFEST.in' 2023-09-10T13:49:24,013 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T13:49:24,014 adding license file 'AUTHORS' 2023-09-10T13:49:24,030 writing manifest file '/tmp/pip-pip-egg-info-gq_qha6j/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:49:24,308 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T13:49:24,312 Source in /tmp/pip-wheel-lzd3kbw4/mikado_a0d970e09ece442d8d5607735c9c58e7 has version 1.2.1, which satisfies requirement mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz 2023-09-10T13:49:24,313 Removed mikado==1.2.1 from https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-f6zzdli4' 2023-09-10T13:49:24,317 Created temporary directory: /tmp/pip-unpack-j2b10l10 2023-09-10T13:49:24,318 Created temporary directory: /tmp/pip-unpack-o890ywxl 2023-09-10T13:49:24,355 Building wheels for collected packages: mikado 2023-09-10T13:49:24,359 Created temporary directory: /tmp/pip-wheel-nqvr99ek 2023-09-10T13:49:24,360 Building wheel for mikado (setup.py): started 2023-09-10T13:49:24,361 Destination directory: /tmp/pip-wheel-nqvr99ek 2023-09-10T13:49:24,361 Running command python setup.py bdist_wheel 2023-09-10T13:49:25,915 running bdist_wheel 2023-09-10T13:49:26,013 running build 2023-09-10T13:49:26,013 running build_py 2023-09-10T13:49:26,040 creating build/lib.linux-armv7l-cpython-311 2023-09-10T13:49:26,040 creating build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:49:26,041 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:49:26,043 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:49:26,045 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:49:26,047 creating build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:26,048 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:26,050 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:26,052 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:26,055 creating build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:49:26,056 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:49:26,057 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:49:26,060 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:49:26,062 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:49:26,064 creating build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,065 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,068 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,071 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,072 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,074 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,077 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:26,080 creating build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:26,081 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:26,085 creating build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,086 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,089 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,091 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,093 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,095 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,097 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,099 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,102 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,104 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,106 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,108 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,112 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,114 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,117 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,119 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,121 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,123 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,126 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,128 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,129 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,131 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,133 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,136 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,138 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,140 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:26,142 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:49:26,144 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:49:26,146 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:49:26,148 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:49:26,151 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:49:26,155 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:26,156 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:26,159 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:26,161 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:26,164 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:49:26,165 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:49:26,168 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:49:26,171 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:49:26,173 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:49:26,176 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,177 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,180 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,183 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,185 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,187 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,189 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,192 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:49:26,195 creating build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,196 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,198 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,200 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,204 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,207 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,212 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,214 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,216 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,219 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:49:26,223 creating build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:49:26,224 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:49:26,228 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:49:26,231 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:49:26,234 creating build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,235 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,238 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,241 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,243 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,245 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,248 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,251 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:49:26,254 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,255 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,258 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,261 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,263 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,266 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:49:26,270 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,271 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,274 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,276 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,278 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,280 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,282 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,286 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:49:26,289 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,290 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,292 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,295 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,297 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,299 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,301 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,304 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,306 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,308 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:49:26,310 running egg_info 2023-09-10T13:49:26,366 writing Mikado.egg-info/PKG-INFO 2023-09-10T13:49:26,370 writing dependency_links to Mikado.egg-info/dependency_links.txt 2023-09-10T13:49:26,372 writing entry points to Mikado.egg-info/entry_points.txt 2023-09-10T13:49:26,375 writing requirements to Mikado.egg-info/requires.txt 2023-09-10T13:49:26,376 writing top-level names to Mikado.egg-info/top_level.txt 2023-09-10T13:49:26,413 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T13:49:26,425 reading manifest template 'MANIFEST.in' 2023-09-10T13:49:27,024 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T13:49:27,025 adding license file 'AUTHORS' 2023-09-10T13:49:27,051 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T13:49:27,068 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2023-09-10T13:49:27,068 !! 2023-09-10T13:49:27,069 ******************************************************************************** 2023-09-10T13:49:27,070 ############################ 2023-09-10T13:49:27,071 # Package would be ignored # 2023-09-10T13:49:27,071 ############################ 2023-09-10T13:49:27,072 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2023-09-10T13:49:27,072 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:49:27,074 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:49:27,074 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2023-09-10T13:49:27,075 to the `packages` configuration field. 2023-09-10T13:49:27,076 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:49:27,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:49:27,077 instead of `find_packages(...)`/`find:`). 2023-09-10T13:49:27,078 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:49:27,079 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:49:27,080 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2023-09-10T13:49:27,081 already explicitly excluding 'Mikado.configuration.scoring_files' via 2023-09-10T13:49:27,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:49:27,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:49:27,082 combination with a more fine grained `package-data` configuration. 2023-09-10T13:49:27,084 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:49:27,085 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:49:27,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:49:27,087 even if it does not contain any `.py` files. 2023-09-10T13:49:27,087 On the other hand, currently there is no concept of package data 2023-09-10T13:49:27,088 directory, all directories are treated like packages. 2023-09-10T13:49:27,088 ******************************************************************************** 2023-09-10T13:49:27,089 !! 2023-09-10T13:49:27,089 check.warn(importable) 2023-09-10T13:49:27,090 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2023-09-10T13:49:27,090 !! 2023-09-10T13:49:27,091 ******************************************************************************** 2023-09-10T13:49:27,091 ############################ 2023-09-10T13:49:27,092 # Package would be ignored # 2023-09-10T13:49:27,092 ############################ 2023-09-10T13:49:27,092 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2023-09-10T13:49:27,093 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:49:27,094 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:49:27,094 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2023-09-10T13:49:27,095 to the `packages` configuration field. 2023-09-10T13:49:27,096 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:49:27,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:49:27,097 instead of `find_packages(...)`/`find:`). 2023-09-10T13:49:27,098 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:49:27,099 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:49:27,100 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2023-09-10T13:49:27,101 already explicitly excluding 'Mikado.tests.__pycache__' via 2023-09-10T13:49:27,101 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:49:27,102 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:49:27,103 combination with a more fine grained `package-data` configuration. 2023-09-10T13:49:27,104 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:49:27,105 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:49:27,106 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:49:27,107 even if it does not contain any `.py` files. 2023-09-10T13:49:27,107 On the other hand, currently there is no concept of package data 2023-09-10T13:49:27,108 directory, all directories are treated like packages. 2023-09-10T13:49:27,108 ******************************************************************************** 2023-09-10T13:49:27,110 !! 2023-09-10T13:49:27,110 check.warn(importable) 2023-09-10T13:49:27,111 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2023-09-10T13:49:27,111 !! 2023-09-10T13:49:27,113 ******************************************************************************** 2023-09-10T13:49:27,113 ############################ 2023-09-10T13:49:27,114 # Package would be ignored # 2023-09-10T13:49:27,114 ############################ 2023-09-10T13:49:27,115 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2023-09-10T13:49:27,116 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:49:27,116 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:49:27,117 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2023-09-10T13:49:27,117 to the `packages` configuration field. 2023-09-10T13:49:27,118 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:49:27,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:49:27,127 instead of `find_packages(...)`/`find:`). 2023-09-10T13:49:27,129 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:49:27,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:49:27,131 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2023-09-10T13:49:27,132 already explicitly excluding 'Mikado.tests.fusion_test' via 2023-09-10T13:49:27,132 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:49:27,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:49:27,133 combination with a more fine grained `package-data` configuration. 2023-09-10T13:49:27,134 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:49:27,135 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:49:27,136 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:49:27,137 even if it does not contain any `.py` files. 2023-09-10T13:49:27,137 On the other hand, currently there is no concept of package data 2023-09-10T13:49:27,138 directory, all directories are treated like packages. 2023-09-10T13:49:27,139 ******************************************************************************** 2023-09-10T13:49:27,141 !! 2023-09-10T13:49:27,143 check.warn(importable) 2023-09-10T13:49:27,143 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,144 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,144 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,145 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,146 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,148 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,159 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,161 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,163 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,170 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,172 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:27,174 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:27,176 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:27,179 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:27,180 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:27,183 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:49:27,186 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,307 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,309 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,312 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,314 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,317 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,322 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,342 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,372 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,376 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,378 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,380 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,383 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,386 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,389 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,392 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,395 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,397 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:49:27,504 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,505 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,507 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,509 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,511 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,514 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,520 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,523 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,526 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,529 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,531 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,535 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,539 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,543 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,546 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,549 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,553 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,555 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,558 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,560 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,562 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,565 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,568 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,571 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,574 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,576 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,578 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,581 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,583 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,586 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,588 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,591 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,593 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,596 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,598 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,600 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,602 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,605 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,607 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,610 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,612 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,615 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,617 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,620 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,622 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,625 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,627 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,630 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,632 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,634 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,637 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,639 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,642 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,644 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,647 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,650 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,652 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,656 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,659 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,662 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,665 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,668 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,671 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,674 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,676 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,679 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,682 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,685 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,688 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,692 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,695 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,699 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,702 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,704 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,707 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,710 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,712 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:49:27,715 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:49:27,716 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:49:27,718 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:49:27,721 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:49:27,723 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:27,726 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:27,729 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:27,731 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:49:27,733 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,734 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,737 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,739 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,741 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,743 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,746 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,748 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,750 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,753 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:49:27,763 running build_ext 2023-09-10T13:49:27,770 building 'Mikado.utilities.overlap' extension 2023-09-10T13:49:27,771 creating build/temp.linux-armv7l-cpython-311 2023-09-10T13:49:27,771 creating build/temp.linux-armv7l-cpython-311/Mikado 2023-09-10T13:49:27,772 creating build/temp.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:49:27,774 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o 2023-09-10T13:49:31,807 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:49:31,910 building 'Mikado.scales.f1' extension 2023-09-10T13:49:31,911 creating build/temp.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:49:31,912 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o 2023-09-10T13:49:35,264 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:49:35,366 building 'Mikado.scales.contrast' extension 2023-09-10T13:49:35,367 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o 2023-09-10T13:49:48,322 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:49:48,435 building 'Mikado.utilities.intervaltree' extension 2023-09-10T13:49:48,436 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o 2023-09-10T13:50:09,752 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:50:09,876 running build_scripts 2023-09-10T13:50:09,877 creating build/scripts-3.11 2023-09-10T13:50:09,878 copying and adjusting util/calculate_distances.py -> build/scripts-3.11 2023-09-10T13:50:09,880 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.11 2023-09-10T13:50:09,882 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.11 2023-09-10T13:50:09,884 copying and adjusting util/asm_collect.py -> build/scripts-3.11 2023-09-10T13:50:09,886 copying and adjusting util/analyse_metrics.py -> build/scripts-3.11 2023-09-10T13:50:09,888 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.11 2023-09-10T13:50:09,890 copying and adjusting util/class_run.py -> build/scripts-3.11 2023-09-10T13:50:09,892 copying and adjusting util/create_model.py -> build/scripts-3.11 2023-09-10T13:50:09,895 copying and adjusting util/grep.py -> build/scripts-3.11 2023-09-10T13:50:09,897 copying and adjusting util/split_fasta.py -> build/scripts-3.11 2023-09-10T13:50:09,898 copying and adjusting util/align_collect.py -> build/scripts-3.11 2023-09-10T13:50:09,900 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.11 2023-09-10T13:50:09,902 copying util/tease_maker_apart.py -> build/scripts-3.11 2023-09-10T13:50:09,904 copying and adjusting util/remove_utrs.py -> build/scripts-3.11 2023-09-10T13:50:09,906 copying and adjusting util/trim_long_introns.py -> build/scripts-3.11 2023-09-10T13:50:09,908 copying and adjusting util/remove_from_embl.py -> build/scripts-3.11 2023-09-10T13:50:09,909 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.11 2023-09-10T13:50:09,911 copying and adjusting util/self_training.py -> build/scripts-3.11 2023-09-10T13:50:09,913 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.11 2023-09-10T13:50:09,914 copying and adjusting util/bam2gtf.py -> build/scripts-3.11 2023-09-10T13:50:09,916 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.11 2023-09-10T13:50:09,917 changing mode of build/scripts-3.11/calculate_distances.py from 644 to 755 2023-09-10T13:50:09,918 changing mode of build/scripts-3.11/extract_promoter_regions.py from 644 to 755 2023-09-10T13:50:09,918 changing mode of build/scripts-3.11/gffjunc_to_bed12.py from 644 to 755 2023-09-10T13:50:09,918 changing mode of build/scripts-3.11/asm_collect.py from 644 to 755 2023-09-10T13:50:09,919 changing mode of build/scripts-3.11/analyse_metrics.py from 644 to 755 2023-09-10T13:50:09,919 changing mode of build/scripts-3.11/merge_junction_bed12.py from 644 to 755 2023-09-10T13:50:09,920 changing mode of build/scripts-3.11/class_run.py from 644 to 755 2023-09-10T13:50:09,920 changing mode of build/scripts-3.11/create_model.py from 644 to 755 2023-09-10T13:50:09,921 changing mode of build/scripts-3.11/grep.py from 644 to 755 2023-09-10T13:50:09,921 changing mode of build/scripts-3.11/split_fasta.py from 644 to 755 2023-09-10T13:50:09,922 changing mode of build/scripts-3.11/align_collect.py from 644 to 755 2023-09-10T13:50:09,922 changing mode of build/scripts-3.11/getFastaFromIds.py from 644 to 755 2023-09-10T13:50:09,923 changing mode of build/scripts-3.11/tease_maker_apart.py from 644 to 755 2023-09-10T13:50:09,923 changing mode of build/scripts-3.11/remove_utrs.py from 644 to 755 2023-09-10T13:50:09,924 changing mode of build/scripts-3.11/trim_long_introns.py from 644 to 755 2023-09-10T13:50:09,924 changing mode of build/scripts-3.11/remove_from_embl.py from 644 to 755 2023-09-10T13:50:09,925 changing mode of build/scripts-3.11/add_transcript_feature_to_gtf.py from 644 to 755 2023-09-10T13:50:09,925 changing mode of build/scripts-3.11/self_training.py from 644 to 755 2023-09-10T13:50:09,926 changing mode of build/scripts-3.11/convert_cdna_match_gff3.py from 644 to 755 2023-09-10T13:50:09,926 changing mode of build/scripts-3.11/bam2gtf.py from 644 to 755 2023-09-10T13:50:09,927 changing mode of build/scripts-3.11/sanitize_blast_db.py from 644 to 755 2023-09-10T13:50:09,950 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-10T13:50:09,950 !! 2023-09-10T13:50:09,951 ******************************************************************************** 2023-09-10T13:50:09,952 Please avoid running ``setup.py`` directly. 2023-09-10T13:50:09,952 Instead, use pypa/build, pypa/installer or other 2023-09-10T13:50:09,953 standards-based tools. 2023-09-10T13:50:09,954 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-10T13:50:09,955 ******************************************************************************** 2023-09-10T13:50:09,956 !! 2023-09-10T13:50:09,957 self.initialize_options() 2023-09-10T13:50:09,976 installing to build/bdist.linux-armv7l/wheel 2023-09-10T13:50:09,976 running install 2023-09-10T13:50:10,000 running install_lib 2023-09-10T13:50:10,024 creating build/bdist.linux-armv7l 2023-09-10T13:50:10,024 creating build/bdist.linux-armv7l/wheel 2023-09-10T13:50:10,026 creating build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:50:10,027 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,028 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,030 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,032 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,034 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,049 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,054 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,057 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,059 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,066 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,069 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:50:10,092 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:50:10,093 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:50:10,095 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:50:10,098 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:50:10,100 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:50:10,104 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,105 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,116 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,118 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,120 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,122 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,132 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,135 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,137 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,145 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,147 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,149 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,151 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,153 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,159 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:50:10,162 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,163 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,166 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,168 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,170 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,172 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,174 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:50:10,176 copying build/lib.linux-armv7l-cpython-311/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:50:10,179 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,180 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,183 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,185 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,187 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,189 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,191 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,194 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,196 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,198 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,201 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,203 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,206 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,208 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,211 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,214 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,216 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,348 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,350 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,353 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,355 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,361 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:50:10,362 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:50:10,364 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:50:10,366 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:50:10,368 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,370 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,372 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,374 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,376 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,378 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,380 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,384 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,402 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,405 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,407 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,410 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,412 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,414 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,441 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,444 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,446 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,449 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,451 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,454 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,549 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,550 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,552 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,554 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,556 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,558 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,561 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,564 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,566 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,568 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,570 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,573 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,576 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,578 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,579 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,581 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,584 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,586 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,589 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,592 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,594 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,597 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,600 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,603 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,606 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,608 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,610 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,613 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,616 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,618 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,621 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,624 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,626 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,629 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,632 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,634 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,636 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,639 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,641 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,644 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,646 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,649 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,651 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,654 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,656 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,659 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,661 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,663 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,665 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,669 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,672 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,676 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,679 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,682 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,685 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,688 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,692 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,695 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,699 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,702 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,705 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,708 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,710 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,715 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,717 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,721 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,724 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,727 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,729 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,732 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,735 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,737 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,740 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,743 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,747 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,750 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,753 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:50:10,756 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,759 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,763 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:50:10,765 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:50:10,767 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:50:10,769 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:50:10,771 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:50:10,773 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:50:10,777 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,778 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,781 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,784 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,785 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,788 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:50:10,791 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,792 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,795 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,798 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,799 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,802 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,804 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,805 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:50:10,809 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,809 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,811 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,814 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,815 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,817 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,819 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,821 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,823 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,825 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:50:10,827 copying build/lib.linux-armv7l-cpython-311/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:50:10,829 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:50:10,831 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,832 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,835 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,837 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,839 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,841 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,843 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,846 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:50:10,849 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:50:10,851 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:50:10,854 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:50:10,855 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:50:10,858 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,859 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,862 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,864 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,866 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,867 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,869 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,872 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,874 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,876 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,886 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,888 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,890 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,892 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:50:10,895 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,897 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,899 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,902 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:50:10,905 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,906 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,908 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,910 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,913 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,915 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,918 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,920 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,922 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,925 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:50:10,927 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:50:10,928 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:50:10,931 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:50:10,934 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:50:10,936 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,937 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,940 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,943 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,945 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,947 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,950 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,952 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:50:10,954 copying build/lib.linux-armv7l-cpython-311/Mikado/version.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:50:10,956 running install_egg_info 2023-09-10T13:50:10,986 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.2.1-py3.11.egg-info 2023-09-10T13:50:11,000 running install_scripts 2023-09-10T13:50:11,001 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data 2023-09-10T13:50:11,001 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,002 copying build/scripts-3.11/calculate_distances.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,005 copying build/scripts-3.11/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,007 copying build/scripts-3.11/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,009 copying build/scripts-3.11/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,011 copying build/scripts-3.11/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,012 copying build/scripts-3.11/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,015 copying build/scripts-3.11/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,017 copying build/scripts-3.11/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,019 copying build/scripts-3.11/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,020 copying build/scripts-3.11/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,022 copying build/scripts-3.11/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,024 copying build/scripts-3.11/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,026 copying build/scripts-3.11/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,028 copying build/scripts-3.11/remove_utrs.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,030 copying build/scripts-3.11/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,032 copying build/scripts-3.11/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,033 copying build/scripts-3.11/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,035 copying build/scripts-3.11/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,037 copying build/scripts-3.11/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,039 copying build/scripts-3.11/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,041 copying build/scripts-3.11/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts 2023-09-10T13:50:11,043 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/calculate_distances.py to 755 2023-09-10T13:50:11,043 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/extract_promoter_regions.py to 755 2023-09-10T13:50:11,044 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/gffjunc_to_bed12.py to 755 2023-09-10T13:50:11,044 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/asm_collect.py to 755 2023-09-10T13:50:11,045 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/analyse_metrics.py to 755 2023-09-10T13:50:11,045 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/merge_junction_bed12.py to 755 2023-09-10T13:50:11,046 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/class_run.py to 755 2023-09-10T13:50:11,046 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/create_model.py to 755 2023-09-10T13:50:11,047 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/grep.py to 755 2023-09-10T13:50:11,047 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/split_fasta.py to 755 2023-09-10T13:50:11,048 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/align_collect.py to 755 2023-09-10T13:50:11,048 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/getFastaFromIds.py to 755 2023-09-10T13:50:11,049 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/tease_maker_apart.py to 755 2023-09-10T13:50:11,049 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/remove_utrs.py to 755 2023-09-10T13:50:11,050 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/trim_long_introns.py to 755 2023-09-10T13:50:11,051 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/remove_from_embl.py to 755 2023-09-10T13:50:11,051 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/add_transcript_feature_to_gtf.py to 755 2023-09-10T13:50:11,052 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/self_training.py to 755 2023-09-10T13:50:11,052 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/convert_cdna_match_gff3.py to 755 2023-09-10T13:50:11,053 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/bam2gtf.py to 755 2023-09-10T13:50:11,053 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.1.data/scripts/sanitize_blast_db.py to 755 2023-09-10T13:50:11,111 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.1.dist-info/WHEEL 2023-09-10T13:50:11,113 creating '/tmp/pip-wheel-nqvr99ek/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-10T13:50:11,116 adding 'Mikado/__init__.py' 2023-09-10T13:50:11,117 adding 'Mikado/exceptions.py' 2023-09-10T13:50:11,118 adding 'Mikado/version.py' 2023-09-10T13:50:11,120 adding 'Mikado/configuration/__init__.py' 2023-09-10T13:50:11,124 adding 'Mikado/configuration/configuration_blueprint.json' 2023-09-10T13:50:11,127 adding 'Mikado/configuration/configurator.py' 2023-09-10T13:50:11,129 adding 'Mikado/configuration/daijin_configurator.py' 2023-09-10T13:50:11,131 adding 'Mikado/configuration/daijin_schema.json' 2023-09-10T13:50:11,132 adding 'Mikado/configuration/requirements_blueprint.json' 2023-09-10T13:50:11,133 adding 'Mikado/configuration/scoring_blueprint.json' 2023-09-10T13:50:11,135 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2023-09-10T13:50:11,137 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2023-09-10T13:50:11,138 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2023-09-10T13:50:11,139 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2023-09-10T13:50:11,141 adding 'Mikado/configuration/scoring_files/human.yaml' 2023-09-10T13:50:11,142 adding 'Mikado/configuration/scoring_files/insects.yaml' 2023-09-10T13:50:11,143 adding 'Mikado/configuration/scoring_files/plants.yaml' 2023-09-10T13:50:11,145 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2023-09-10T13:50:11,146 adding 'Mikado/configuration/scoring_files/worm.yaml' 2023-09-10T13:50:11,149 adding 'Mikado/daijin/__init__.py' 2023-09-10T13:50:11,151 adding 'Mikado/daijin/example_config.yaml' 2023-09-10T13:50:11,152 adding 'Mikado/daijin/hpc.json' 2023-09-10T13:50:11,153 adding 'Mikado/daijin/hpc.yaml' 2023-09-10T13:50:11,155 adding 'Mikado/daijin/mikado.snakefile' 2023-09-10T13:50:11,159 adding 'Mikado/daijin/tr.snakefile' 2023-09-10T13:50:11,161 adding 'Mikado/loci/__init__.py' 2023-09-10T13:50:11,168 adding 'Mikado/loci/abstractlocus.py' 2023-09-10T13:50:11,170 adding 'Mikado/loci/excluded.py' 2023-09-10T13:50:11,174 adding 'Mikado/loci/locus.py' 2023-09-10T13:50:11,175 adding 'Mikado/loci/monosublocus.py' 2023-09-10T13:50:11,178 adding 'Mikado/loci/monosublocusholder.py' 2023-09-10T13:50:11,180 adding 'Mikado/loci/reference_gene.py' 2023-09-10T13:50:11,182 adding 'Mikado/loci/sublocus.py' 2023-09-10T13:50:11,188 adding 'Mikado/loci/superlocus.py' 2023-09-10T13:50:11,191 adding 'Mikado/parsers/GFF.py' 2023-09-10T13:50:11,193 adding 'Mikado/parsers/GTF.py' 2023-09-10T13:50:11,194 adding 'Mikado/parsers/__init__.py' 2023-09-10T13:50:11,198 adding 'Mikado/parsers/bed12.py' 2023-09-10T13:50:11,201 adding 'Mikado/parsers/blast_utils.py' 2023-09-10T13:50:11,205 adding 'Mikado/parsers/blast_xml.py' 2023-09-10T13:50:11,207 adding 'Mikado/parsers/gfannotation.py' 2023-09-10T13:50:11,209 adding 'Mikado/picking/__init__.py' 2023-09-10T13:50:11,213 adding 'Mikado/picking/loci_processer.py' 2023-09-10T13:50:11,219 adding 'Mikado/picking/picker.py' 2023-09-10T13:50:11,221 adding 'Mikado/preparation/__init__.py' 2023-09-10T13:50:11,223 adding 'Mikado/preparation/annotation_parser.py' 2023-09-10T13:50:11,225 adding 'Mikado/preparation/checking.py' 2023-09-10T13:50:11,227 adding 'Mikado/preparation/prepare.py' 2023-09-10T13:50:11,229 adding 'Mikado/scales/__init__.py' 2023-09-10T13:50:11,233 adding 'Mikado/scales/accountant.py' 2023-09-10T13:50:11,237 adding 'Mikado/scales/assigner.py' 2023-09-10T13:50:11,240 adding 'Mikado/scales/class_codes.py' 2023-09-10T13:50:11,243 adding 'Mikado/scales/compare.py' 2023-09-10T13:50:11,289 adding 'Mikado/scales/contrast.c' 2023-09-10T13:50:11,406 adding 'Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:50:11,411 adding 'Mikado/scales/contrast.pxd' 2023-09-10T13:50:11,413 adding 'Mikado/scales/contrast.pyx' 2023-09-10T13:50:11,439 adding 'Mikado/scales/f1.c' 2023-09-10T13:50:11,478 adding 'Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:50:11,481 adding 'Mikado/scales/f1.pxd' 2023-09-10T13:50:11,482 adding 'Mikado/scales/f1.pyx' 2023-09-10T13:50:11,483 adding 'Mikado/scales/resultstorer.py' 2023-09-10T13:50:11,485 adding 'Mikado/serializers/__init__.py' 2023-09-10T13:50:11,487 adding 'Mikado/serializers/external.py' 2023-09-10T13:50:11,488 adding 'Mikado/serializers/junction.py' 2023-09-10T13:50:11,490 adding 'Mikado/serializers/orf.py' 2023-09-10T13:50:11,492 adding 'Mikado/serializers/blast_serializer/__init__.py' 2023-09-10T13:50:11,494 adding 'Mikado/serializers/blast_serializer/hit.py' 2023-09-10T13:50:11,496 adding 'Mikado/serializers/blast_serializer/hsp.py' 2023-09-10T13:50:11,497 adding 'Mikado/serializers/blast_serializer/query.py' 2023-09-10T13:50:11,498 adding 'Mikado/serializers/blast_serializer/target.py' 2023-09-10T13:50:11,500 adding 'Mikado/serializers/blast_serializer/utils.py' 2023-09-10T13:50:11,503 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2023-09-10T13:50:11,505 adding 'Mikado/subprograms/__init__.py' 2023-09-10T13:50:11,506 adding 'Mikado/subprograms/__main__.py' 2023-09-10T13:50:11,508 adding 'Mikado/subprograms/compare.py' 2023-09-10T13:50:11,510 adding 'Mikado/subprograms/configure.py' 2023-09-10T13:50:11,512 adding 'Mikado/subprograms/pick.py' 2023-09-10T13:50:11,514 adding 'Mikado/subprograms/prepare.py' 2023-09-10T13:50:11,517 adding 'Mikado/subprograms/serialise.py' 2023-09-10T13:50:11,519 adding 'Mikado/subprograms/util/__init__.py' 2023-09-10T13:50:11,520 adding 'Mikado/subprograms/util/awk_gtf.py' 2023-09-10T13:50:11,521 adding 'Mikado/subprograms/util/class_codes.py' 2023-09-10T13:50:11,523 adding 'Mikado/subprograms/util/convert.py' 2023-09-10T13:50:11,524 adding 'Mikado/subprograms/util/grep.py' 2023-09-10T13:50:11,525 adding 'Mikado/subprograms/util/merge_blast.py' 2023-09-10T13:50:11,527 adding 'Mikado/subprograms/util/metrics.py' 2023-09-10T13:50:11,530 adding 'Mikado/subprograms/util/stats.py' 2023-09-10T13:50:11,532 adding 'Mikado/subprograms/util/trim.py' 2023-09-10T13:50:11,534 adding 'Mikado/tests/__init__.py' 2023-09-10T13:50:11,537 adding 'Mikado/tests/assigner_tester.py' 2023-09-10T13:50:12,426 adding 'Mikado/tests/chr5.fas.gz' 2023-09-10T13:50:12,494 adding 'Mikado/tests/configuration.yaml' 2023-09-10T13:50:12,496 adding 'Mikado/tests/cufflinks.gtf' 2023-09-10T13:50:12,497 adding 'Mikado/tests/genome.fai' 2023-09-10T13:50:12,499 adding 'Mikado/tests/intervaltree_tests.py' 2023-09-10T13:50:12,504 adding 'Mikado/tests/junctions.bed' 2023-09-10T13:50:12,511 adding 'Mikado/tests/locus_tester.py' 2023-09-10T13:50:12,537 adding 'Mikado/tests/mikado.blast.asn.gz' 2023-09-10T13:50:12,593 adding 'Mikado/tests/mikado.blast.xml' 2023-09-10T13:50:12,869 adding 'Mikado/tests/mikado.db' 2023-09-10T13:50:12,887 adding 'Mikado/tests/mikado_prepared.gtf' 2023-09-10T13:50:12,892 adding 'Mikado/tests/orf_tester.py' 2023-09-10T13:50:12,894 adding 'Mikado/tests/parser_testing.py' 2023-09-10T13:50:12,895 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2023-09-10T13:50:12,896 adding 'Mikado/tests/plants.yaml~' 2023-09-10T13:50:12,898 adding 'Mikado/tests/scoring_only_cds.yaml' 2023-09-10T13:50:12,899 adding 'Mikado/tests/test_bed12.py' 2023-09-10T13:50:12,900 adding 'Mikado/tests/test_blast_related.py' 2023-09-10T13:50:12,902 adding 'Mikado/tests/test_clique_methods.py' 2023-09-10T13:50:12,903 adding 'Mikado/tests/test_db_utils.py' 2023-09-10T13:50:12,904 adding 'Mikado/tests/test_external_scores.py' 2023-09-10T13:50:12,905 adding 'Mikado/tests/test_gene.py' 2023-09-10T13:50:12,907 adding 'Mikado/tests/test_invalid_orfs.py' 2023-09-10T13:50:12,908 adding 'Mikado/tests/test_json.py' 2023-09-10T13:50:12,910 adding 'Mikado/tests/test_metrics.py' 2023-09-10T13:50:12,911 adding 'Mikado/tests/test_modifications.py' 2023-09-10T13:50:12,912 adding 'Mikado/tests/test_serialisation.py' 2023-09-10T13:50:12,914 adding 'Mikado/tests/test_splitting.py' 2023-09-10T13:50:12,917 adding 'Mikado/tests/test_system_calls.py' 2023-09-10T13:50:12,919 adding 'Mikado/tests/test_transcript_checker.py' 2023-09-10T13:50:12,921 adding 'Mikado/tests/test_transcript_methods.py' 2023-09-10T13:50:12,924 adding 'Mikado/tests/transcript_tester_negative.py' 2023-09-10T13:50:12,928 adding 'Mikado/tests/transcript_tester_positive.py' 2023-09-10T13:50:12,931 adding 'Mikado/tests/transcript_tester_single.py' 2023-09-10T13:50:12,933 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2023-09-10T13:50:12,935 adding 'Mikado/tests/trinity.gff3' 2023-09-10T13:50:12,937 adding 'Mikado/tests/trinity.gtf' 2023-09-10T13:50:12,939 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2023-09-10T13:50:12,941 adding 'Mikado/tests/trinity_stats.txt' 2023-09-10T13:50:13,669 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2023-09-10T13:50:13,725 adding 'Mikado/tests/utilities_tester.py' 2023-09-10T13:50:13,729 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2023-09-10T13:50:13,730 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2023-09-10T13:50:13,731 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2023-09-10T13:50:13,736 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2023-09-10T13:50:13,740 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2023-09-10T13:50:13,744 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2023-09-10T13:50:13,747 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2023-09-10T13:50:13,749 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2023-09-10T13:50:13,751 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2023-09-10T13:50:13,761 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2023-09-10T13:50:13,769 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2023-09-10T13:50:13,777 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2023-09-10T13:50:13,783 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2023-09-10T13:50:13,789 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2023-09-10T13:50:13,795 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2023-09-10T13:50:13,796 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2023-09-10T13:50:13,798 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2023-09-10T13:50:13,799 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2023-09-10T13:50:13,801 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2023-09-10T13:50:13,802 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2023-09-10T13:50:13,805 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2023-09-10T13:50:13,807 adding 'Mikado/tests/__pycache__/test_bed12.cpython-36.pyc' 2023-09-10T13:50:13,809 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2023-09-10T13:50:13,810 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2023-09-10T13:50:13,812 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2023-09-10T13:50:13,813 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2023-09-10T13:50:13,815 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2023-09-10T13:50:13,816 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2023-09-10T13:50:13,818 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2023-09-10T13:50:13,819 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2023-09-10T13:50:13,821 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2023-09-10T13:50:13,822 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2023-09-10T13:50:13,823 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2023-09-10T13:50:13,825 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2023-09-10T13:50:13,826 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2023-09-10T13:50:13,827 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2023-09-10T13:50:13,828 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2023-09-10T13:50:13,830 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2023-09-10T13:50:13,831 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2023-09-10T13:50:13,833 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2023-09-10T13:50:13,834 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2023-09-10T13:50:13,836 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2023-09-10T13:50:13,837 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2023-09-10T13:50:13,839 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2023-09-10T13:50:13,840 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2023-09-10T13:50:13,842 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2023-09-10T13:50:13,843 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2023-09-10T13:50:13,845 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2023-09-10T13:50:13,846 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2023-09-10T13:50:13,848 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2023-09-10T13:50:13,850 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2023-09-10T13:50:13,852 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2023-09-10T13:50:13,854 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2023-09-10T13:50:13,856 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2023-09-10T13:50:13,858 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2023-09-10T13:50:13,862 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2023-09-10T13:50:13,867 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2023-09-10T13:50:13,871 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2023-09-10T13:50:13,873 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2023-09-10T13:50:13,875 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2023-09-10T13:50:13,877 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2023-09-10T13:50:13,880 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2023-09-10T13:50:13,882 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2023-09-10T13:50:13,885 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2023-09-10T13:50:13,888 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2023-09-10T13:50:13,891 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2023-09-10T13:50:13,895 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2023-09-10T13:50:13,900 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2023-09-10T13:50:13,905 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2023-09-10T13:50:13,911 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2023-09-10T13:50:13,915 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2023-09-10T13:50:13,919 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2023-09-10T13:50:13,922 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2023-09-10T13:50:13,924 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2023-09-10T13:50:13,926 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2023-09-10T13:50:13,927 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2023-09-10T13:50:13,929 adding 'Mikado/tests/fusion_test/fusion_test.log' 2023-09-10T13:50:13,930 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2023-09-10T13:50:13,932 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2023-09-10T13:50:13,933 adding 'Mikado/transcripts/__init__.py' 2023-09-10T13:50:13,935 adding 'Mikado/transcripts/clique_methods.py' 2023-09-10T13:50:13,946 adding 'Mikado/transcripts/transcript.py' 2023-09-10T13:50:13,949 adding 'Mikado/transcripts/transcriptchecker.py' 2023-09-10T13:50:13,950 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2023-09-10T13:50:13,954 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2023-09-10T13:50:13,956 adding 'Mikado/transcripts/transcript_methods/printing.py' 2023-09-10T13:50:13,959 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2023-09-10T13:50:13,963 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2023-09-10T13:50:13,966 adding 'Mikado/utilities/__init__.py' 2023-09-10T13:50:13,968 adding 'Mikado/utilities/dbutils.py' 2023-09-10T13:50:14,034 adding 'Mikado/utilities/intervaltree.c' 2023-09-10T13:50:14,223 adding 'Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:50:14,233 adding 'Mikado/utilities/intervaltree.pyx' 2023-09-10T13:50:14,234 adding 'Mikado/utilities/log_utils.py' 2023-09-10T13:50:14,260 adding 'Mikado/utilities/overlap.c' 2023-09-10T13:50:14,306 adding 'Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:50:14,309 adding 'Mikado/utilities/overlap.pxd' 2023-09-10T13:50:14,311 adding 'Mikado/utilities/overlap.pyx' 2023-09-10T13:50:14,313 adding 'Mikado-1.2.1.data/scripts/add_transcript_feature_to_gtf.py' 2023-09-10T13:50:14,315 adding 'Mikado-1.2.1.data/scripts/align_collect.py' 2023-09-10T13:50:14,316 adding 'Mikado-1.2.1.data/scripts/analyse_metrics.py' 2023-09-10T13:50:14,317 adding 'Mikado-1.2.1.data/scripts/asm_collect.py' 2023-09-10T13:50:14,319 adding 'Mikado-1.2.1.data/scripts/bam2gtf.py' 2023-09-10T13:50:14,321 adding 'Mikado-1.2.1.data/scripts/calculate_distances.py' 2023-09-10T13:50:14,322 adding 'Mikado-1.2.1.data/scripts/class_run.py' 2023-09-10T13:50:14,323 adding 'Mikado-1.2.1.data/scripts/convert_cdna_match_gff3.py' 2023-09-10T13:50:14,325 adding 'Mikado-1.2.1.data/scripts/create_model.py' 2023-09-10T13:50:14,327 adding 'Mikado-1.2.1.data/scripts/extract_promoter_regions.py' 2023-09-10T13:50:14,328 adding 'Mikado-1.2.1.data/scripts/getFastaFromIds.py' 2023-09-10T13:50:14,330 adding 'Mikado-1.2.1.data/scripts/gffjunc_to_bed12.py' 2023-09-10T13:50:14,331 adding 'Mikado-1.2.1.data/scripts/grep.py' 2023-09-10T13:50:14,333 adding 'Mikado-1.2.1.data/scripts/merge_junction_bed12.py' 2023-09-10T13:50:14,334 adding 'Mikado-1.2.1.data/scripts/remove_from_embl.py' 2023-09-10T13:50:14,336 adding 'Mikado-1.2.1.data/scripts/remove_utrs.py' 2023-09-10T13:50:14,337 adding 'Mikado-1.2.1.data/scripts/sanitize_blast_db.py' 2023-09-10T13:50:14,339 adding 'Mikado-1.2.1.data/scripts/self_training.py' 2023-09-10T13:50:14,341 adding 'Mikado-1.2.1.data/scripts/split_fasta.py' 2023-09-10T13:50:14,342 adding 'Mikado-1.2.1.data/scripts/tease_maker_apart.py' 2023-09-10T13:50:14,344 adding 'Mikado-1.2.1.data/scripts/trim_long_introns.py' 2023-09-10T13:50:14,346 adding 'Mikado-1.2.1.dist-info/AUTHORS' 2023-09-10T13:50:14,347 adding 'Mikado-1.2.1.dist-info/METADATA' 2023-09-10T13:50:14,348 adding 'Mikado-1.2.1.dist-info/WHEEL' 2023-09-10T13:50:14,349 adding 'Mikado-1.2.1.dist-info/entry_points.txt' 2023-09-10T13:50:14,350 adding 'Mikado-1.2.1.dist-info/top_level.txt' 2023-09-10T13:50:14,354 adding 'Mikado-1.2.1.dist-info/RECORD' 2023-09-10T13:50:14,540 removing build/bdist.linux-armv7l/wheel 2023-09-10T13:50:14,748 Building wheel for mikado (setup.py): finished with status 'done' 2023-09-10T13:50:14,957 Created wheel for mikado: filename=Mikado-1.2.1-cp311-cp311-linux_armv7l.whl size=17643150 sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e 2023-09-10T13:50:14,959 Stored in directory: /tmp/pip-ephem-wheel-cache-u60wyr0m/wheels/75/ee/c5/a1c88055b3fb206bf2c3e94a94d6ce5091e0d2d042107deefd 2023-09-10T13:50:14,982 Successfully built mikado 2023-09-10T13:50:15,426 Removed build tracker: '/tmp/pip-build-tracker-f6zzdli4'