2023-09-10T13:55:01,074 Created temporary directory: /tmp/pip-build-tracker-3jgob5nv 2023-09-10T13:55:01,076 Initialized build tracking at /tmp/pip-build-tracker-3jgob5nv 2023-09-10T13:55:01,076 Created build tracker: /tmp/pip-build-tracker-3jgob5nv 2023-09-10T13:55:01,077 Entered build tracker: /tmp/pip-build-tracker-3jgob5nv 2023-09-10T13:55:01,078 Created temporary directory: /tmp/pip-wheel-7c10pi5p 2023-09-10T13:55:01,083 Created temporary directory: /tmp/pip-ephem-wheel-cache-d_e3aa00 2023-09-10T13:55:01,115 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T13:55:01,118 2 location(s) to search for versions of mikado: 2023-09-10T13:55:01,118 * https://pypi.org/simple/mikado/ 2023-09-10T13:55:01,118 * https://www.piwheels.org/simple/mikado/ 2023-09-10T13:55:01,119 Fetching project page and analyzing links: https://pypi.org/simple/mikado/ 2023-09-10T13:55:01,120 Getting page https://pypi.org/simple/mikado/ 2023-09-10T13:55:01,122 Found index url https://pypi.org/simple/ 2023-09-10T13:55:01,263 Fetched page https://pypi.org/simple/mikado/ as application/vnd.pypi.simple.v1+json 2023-09-10T13:55:01,269 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1 2023-09-10T13:55:01,270 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b9 2023-09-10T13:55:01,270 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0.0b10 2023-09-10T13:55:01,271 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz (from https://pypi.org/simple/mikado/), version: 1.0 2023-09-10T13:55:01,271 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.1 2023-09-10T13:55:01,272 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2 2023-09-10T13:55:01,273 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.1 2023-09-10T13:55:01,273 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.2 2023-09-10T13:55:01,274 Skipping link: No binaries permitted for mikado: https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/mikado/) 2023-09-10T13:55:01,275 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz (from https://pypi.org/simple/mikado/), version: 1.2.4 2023-09-10T13:55:01,276 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc1 2023-09-10T13:55:01,276 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz (from https://pypi.org/simple/mikado/), version: 2.0rc2 2023-09-10T13:55:01,277 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0 2023-09-10T13:55:01,278 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1 2023-09-10T13:55:01,279 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2 2023-09-10T13:55:01,280 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0 2023-09-10T13:55:01,281 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1 2023-09-10T13:55:01,282 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0 2023-09-10T13:55:01,283 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1 2023-09-10T13:55:01,284 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2 2023-09-10T13:55:01,285 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3 2023-09-10T13:55:01,286 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4 2023-09-10T13:55:01,287 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5 2023-09-10T13:55:01,288 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0 2023-09-10T13:55:01,289 Found link https://files.pythonhosted.org/packages/8c/7c/70149e3cca2d6e50f302d7615728ecaade107420be6c7f6b52d2c89135b1/Mikado-2.3.1.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.1 2023-09-10T13:55:01,289 Found link https://files.pythonhosted.org/packages/d1/90/5867a6616f873700d9bd599edbfefe142307d1c0dcefb02f8106bed2794d/Mikado-2.3.2.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.2 2023-09-10T13:55:01,290 Found link https://files.pythonhosted.org/packages/37/09/898b9cc9c310317368a4a0a71f818fab51a1f7bea5eee895284036116321/Mikado-2.3.3.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.3 2023-09-10T13:55:01,291 Found link https://files.pythonhosted.org/packages/7c/53/cbd94a6419cb6b85fe392f5e82b2270567a7f3fd3cf381f54f9bd080d4b0/Mikado-2.3.4.tar.gz (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.4 2023-09-10T13:55:01,292 Fetching project page and analyzing links: https://www.piwheels.org/simple/mikado/ 2023-09-10T13:55:01,293 Getting page https://www.piwheels.org/simple/mikado/ 2023-09-10T13:55:01,294 Found index url https://www.piwheels.org/simple/ 2023-09-10T13:55:01,721 Fetched page https://www.piwheels.org/simple/mikado/ as text/html 2023-09-10T13:55:01,753 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv7l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,754 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp39-cp39-linux_armv6l.whl#sha256=eae7460c0e91feef77b9891ab838d346e9149481f59d271ace65691fd3fab322 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,754 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,755 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl#sha256=d200ed2b907ce98c298ab164a11c61552acec54fed7a727d944b8744bc9c87a5 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,755 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv7l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,756 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp39-cp39-linux_armv6l.whl#sha256=8ae20fd6fa9134eaf3b4216aafe499dd03d080f1338d465f819e529b9448178b (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,757 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,757 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl#sha256=b860c76dd2aff5fb774ebbede86a08d05ca2bcc32e188e0a8fc6b3392e132b55 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,758 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv7l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,758 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp39-cp39-linux_armv6l.whl#sha256=3ee48fa3d96deeb9e0a99617a0e99dca88fb69d47078393f8caa1f08fa35ce8a (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,759 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,759 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl#sha256=0962ee8458a1d2c09e44acbf646c97dfbbaacb80b1cbc5e1e6546bc3175e9c6c (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,760 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv7l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,760 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp39-cp39-linux_armv6l.whl#sha256=a38312d4ddc4abf2c34c1de984f3023e216cbaa455158a856480ae4d8e68c745 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,761 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,761 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl#sha256=fc848e6322df2e3611ca3722bcee0981f195f667bf874a7c6dcea0f9dc0ab731 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,762 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,762 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=a041f4538b689653924bc0c7bdd03bb29fdda8143a60434de6e2d63aa67cd0c8 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,763 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,763 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl#sha256=4e8abcc783b98e290382b8ec0ee7f385c27700d5a9c1841a7bcae3ea507170a0 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,764 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv7l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,764 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp39-cp39-linux_armv6l.whl#sha256=3f743cbc61207059885fe9a59589bf602a3f90a29738ac52092067a0e6422a50 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,765 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,765 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl#sha256=5c409502210a8aefb7de44b86fb2ea2a309b92b91226e6b13d4d54725d171baf (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,766 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv7l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,767 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp39-cp39-linux_armv6l.whl#sha256=867f03bfe6e9cf06e29820272b9f451f30462c4287ebaebebe24b3ee358be321 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,767 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,768 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl#sha256=0754ca2b8f81fbd6eb9ff228073ae59a24073e3f1b7b4ec29b0d65a71e0370a7 (from https://www.piwheels.org/simple/mikado/) (requires-python:>3.6) 2023-09-10T13:55:01,768 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-2.2.3-cp39-cp39-linux_armv7l.whl#sha256=6ab7b92ed4d7a2e550425206bf76466c2a06204965e72e2a037d0619c1176c17 (from https://www.piwheels.org/simple/mikado/) (requires-python:>=3.6) 2023-09-10T13:55:01,769 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,795 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,796 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl#sha256=013fe7312e89e4ef0a1cefc59efd6deded6fe09a82e2684638461eefc0d15cec (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,797 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl#sha256=70805f9e31cbe895eb764eccf40b81eb7dbc61a65ff199ddbefdebde920c1447 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,797 Skipping link: No binaries permitted for mikado: 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https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,800 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl#sha256=6e1e51e81057df0e2d693c84b108c9fc11c0b43b8f11118797d73d7838a9eb6d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,800 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,801 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl#sha256=61a7b7c61f8476136a43f64ff77f3eedf70a72ac480343a833472539bb9be86a (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,802 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,802 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=02f84927b3a911dd345525ca16e3ca1e880528ab03a545543f33a9cfb49c5f4e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,803 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,803 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl#sha256=6302e3b12807435d38dfd802e1b8dc983feb6cea1b55db4e480aec539a5f85bc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,804 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,804 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl#sha256=a39e49d25153534bd5c1e6574e84ed72e6814b12ed39527b7e329221e6f1b13d (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,805 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,805 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=a2910227f92bec48ad32c61c404cd1b8637bede7fbd684ae3d64df57bbe5ac7b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,806 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv7l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,806 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp311-cp311-linux_armv6l.whl#sha256=8cb994b5e0b5076b40fd77ebadda7a599cb19d680ca175eba47f43e372701c97 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,807 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv6l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,807 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp35-cp35m-linux_armv7l.whl#sha256=dae54e57e5b7f3185e90e47fa278840a38f8c98d49a7a337b29951bec33ece13 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,808 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv7l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,809 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp34-cp34m-linux_armv6l.whl#sha256=4bb34a1ae37485284a0661c2a6a7f1094636a0372a859dcd87d7c0aad94c91cd (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,809 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv7l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,810 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.2-cp37-cp37m-linux_armv6l.whl#sha256=5a5abadadc716ff22023b6f44b03a9e8049fac6667df41dbf611f0597708a9b7 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,811 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv7l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,811 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp311-cp311-linux_armv6l.whl#sha256=cc5c48ef960792f6929b69b2545baa144ec96b108c7bb51057f8a127f5cf5c31 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,812 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv7l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,812 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp34-cp34m-linux_armv6l.whl#sha256=ad148a2be64148656d9fd55c8a2767fb7b93b5c4f225dd7f44bc45c779afe4ca (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,813 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv7l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,813 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.1-cp35-cp35m-linux_armv6l.whl#sha256=15e4b722560a6b03960c443290d2e84fc46dfb6eef983541141cec45292a850e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,814 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv7l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,814 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp311-cp311-linux_armv6l.whl#sha256=feb40aaa79ce035bee7e7b485c3f920f1f1dcf58ffff5e0305db6afebccbc9fb (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,815 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv6l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,815 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0-cp35-cp35m-linux_armv7l.whl#sha256=a8d63c41eb54392f132fadff33c5b18e9f67778562711eb50caa98dcbe7f1f84 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,816 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,817 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl#sha256=18be66f9bf4e8c24ff8fd2641ca6d9180948f738281c5967e141c01659a4076c (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,817 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,818 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl#sha256=5efcb4a1b4a9e814f31e3ac913e4debb0c7eb4eb35328f9c1a7044a7d919efdc (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,819 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,819 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl#sha256=ed7e4964520403c9d79c191483d7a3d9ad8e0b35b77eae60f39cd0f1b5d70b0e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,820 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,820 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl#sha256=20c5fe322f4783bf164ebe1856a68d1f05890b4df93d62a91e5a403942d99a08 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,821 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,821 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl#sha256=bf8598c676e5ac37decb6a90621ec401e89b7791374e961d544d8f1a924a317e (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,822 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,822 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl#sha256=e42650c477a2db9d73486fb0c1ea7183280ccd2d216a8994a4620148d1208b6b (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,823 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,824 Skipping link: No binaries permitted for mikado: https://www.piwheels.org/simple/mikado/Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl#sha256=ad15eb4f2ea89eef0f6fdfacdacafc0005a9554e350cc2e9da31cc8512dfdb15 (from https://www.piwheels.org/simple/mikado/) 2023-09-10T13:55:01,824 Skipping link: not a file: https://www.piwheels.org/simple/mikado/ 2023-09-10T13:55:01,825 Skipping link: not a file: https://pypi.org/simple/mikado/ 2023-09-10T13:55:01,846 Given no hashes to check 1 links for project 'mikado': discarding no candidates 2023-09-10T13:55:01,864 Collecting mikado==1.2.2 2023-09-10T13:55:01,866 Created temporary directory: /tmp/pip-unpack-yz5lq3g4 2023-09-10T13:55:02,260 Downloading Mikado-1.2.2.tar.gz (22.1 MB) 2023-09-10T13:55:13,328 Added mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-3jgob5nv' 2023-09-10T13:55:13,329 Running setup.py (path:/tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790/setup.py) egg_info for package mikado 2023-09-10T13:55:13,330 Created temporary directory: /tmp/pip-pip-egg-info-p911402u 2023-09-10T13:55:13,331 Preparing metadata (setup.py): started 2023-09-10T13:55:13,332 Running command python setup.py egg_info 2023-09-10T13:55:15,547 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790/Mikado/scales/contrast.pxd 2023-09-10T13:55:15,547 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:55:16,372 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790/Mikado/scales/f1.pxd 2023-09-10T13:55:16,373 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:55:16,459 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790/Mikado/utilities/intervaltree.pyx 2023-09-10T13:55:16,459 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:55:17,506 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790/Mikado/utilities/overlap.pxd 2023-09-10T13:55:17,506 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-10T13:55:17,630 Compiling Mikado/utilities/overlap.pyx because it changed. 2023-09-10T13:55:17,631 Compiling Mikado/scales/f1.pyx because it changed. 2023-09-10T13:55:17,632 Compiling Mikado/scales/contrast.pyx because it changed. 2023-09-10T13:55:17,632 Compiling Mikado/utilities/intervaltree.pyx because it changed. 2023-09-10T13:55:17,633 [1/4] Cythonizing Mikado/scales/contrast.pyx 2023-09-10T13:55:17,633 [2/4] Cythonizing Mikado/scales/f1.pyx 2023-09-10T13:55:17,634 [3/4] Cythonizing Mikado/utilities/intervaltree.pyx 2023-09-10T13:55:17,634 [4/4] Cythonizing Mikado/utilities/overlap.pyx 2023-09-10T13:55:18,104 running egg_info 2023-09-10T13:55:18,106 creating /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info 2023-09-10T13:55:18,129 writing /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/PKG-INFO 2023-09-10T13:55:18,134 writing dependency_links to /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/dependency_links.txt 2023-09-10T13:55:18,136 writing entry points to /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/entry_points.txt 2023-09-10T13:55:18,139 writing requirements to /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/requires.txt 2023-09-10T13:55:18,140 writing top-level names to /tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/top_level.txt 2023-09-10T13:55:18,142 writing manifest file '/tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:55:18,280 reading manifest file '/tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:55:18,281 reading manifest template 'MANIFEST.in' 2023-09-10T13:55:19,504 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T13:55:19,505 adding license file 'AUTHORS' 2023-09-10T13:55:19,570 writing manifest file '/tmp/pip-pip-egg-info-p911402u/Mikado.egg-info/SOURCES.txt' 2023-09-10T13:55:19,851 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T13:55:19,855 Source in /tmp/pip-wheel-7c10pi5p/mikado_d57890c6e6914d3882d2b762d16dd790 has version 1.2.2, which satisfies requirement mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz 2023-09-10T13:55:19,856 Removed mikado==1.2.2 from https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-3jgob5nv' 2023-09-10T13:55:19,861 Created temporary directory: /tmp/pip-unpack-7g88wmlt 2023-09-10T13:55:19,862 Created temporary directory: /tmp/pip-unpack-o1mqbtx2 2023-09-10T13:55:19,900 Building wheels for collected packages: mikado 2023-09-10T13:55:19,905 Created temporary directory: /tmp/pip-wheel-cpafoc9m 2023-09-10T13:55:19,905 Building wheel for mikado (setup.py): started 2023-09-10T13:55:19,906 Destination directory: /tmp/pip-wheel-cpafoc9m 2023-09-10T13:55:19,907 Running command python setup.py bdist_wheel 2023-09-10T13:55:21,477 running bdist_wheel 2023-09-10T13:55:21,574 running build 2023-09-10T13:55:21,575 running build_py 2023-09-10T13:55:21,602 creating build/lib.linux-armv7l-cpython-311 2023-09-10T13:55:21,602 creating build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:55:21,604 copying Mikado/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:55:21,606 copying Mikado/exceptions.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:55:21,608 copying Mikado/version.py -> build/lib.linux-armv7l-cpython-311/Mikado 2023-09-10T13:55:21,610 creating build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:21,611 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:21,613 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:21,615 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:21,618 creating build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,619 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,621 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,623 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,626 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,629 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,631 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,633 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,636 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,639 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-cpython-311/Mikado/loci 2023-09-10T13:55:21,642 creating build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,643 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,646 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,647 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,650 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,653 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,655 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,657 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-cpython-311/Mikado/parsers 2023-09-10T13:55:21,660 creating build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:55:21,661 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:55:21,663 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:55:21,665 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:55:21,668 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-cpython-311/Mikado/preparation 2023-09-10T13:55:21,670 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:55:21,671 copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:55:21,673 copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:55:21,677 copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:55:21,680 copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts 2023-09-10T13:55:21,682 creating build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:21,683 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:21,686 creating build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:55:21,687 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:55:21,689 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:55:21,691 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-cpython-311/Mikado/picking 2023-09-10T13:55:21,695 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:55:21,696 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:55:21,698 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:55:21,700 copying Mikado/serializers/external.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:55:21,702 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers 2023-09-10T13:55:21,705 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:21,705 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:21,707 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:21,709 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:21,713 creating build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,713 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,715 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,718 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,720 copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,723 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,724 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:21,728 creating build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,729 copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,732 copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,733 copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,736 copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,738 copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,740 copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,743 copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,745 copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,747 copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,749 copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,752 copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,754 copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,756 copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,758 copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,760 copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,762 copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,764 copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,766 copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,768 copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,771 copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,773 copying Mikado/tests/test_bed12.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,775 copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,778 copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,780 copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,783 copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:21,805 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,805 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,815 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,817 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,820 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,827 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,830 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,833 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms 2023-09-10T13:55:21,843 creating build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:21,845 copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:22,363 copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:22,367 copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:22,372 copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:22,378 copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods 2023-09-10T13:55:22,384 creating build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,386 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,390 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,393 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,398 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,408 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,412 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,415 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer 2023-09-10T13:55:22,420 creating build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,422 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,426 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,430 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,435 copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,440 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,444 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,448 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,454 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,458 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util 2023-09-10T13:55:22,463 running egg_info 2023-09-10T13:55:22,564 writing Mikado.egg-info/PKG-INFO 2023-09-10T13:55:22,570 writing dependency_links to Mikado.egg-info/dependency_links.txt 2023-09-10T13:55:22,572 writing entry points to Mikado.egg-info/entry_points.txt 2023-09-10T13:55:22,580 writing requirements to Mikado.egg-info/requires.txt 2023-09-10T13:55:22,582 writing top-level names to Mikado.egg-info/top_level.txt 2023-09-10T13:55:22,636 reading manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T13:55:22,682 reading manifest template 'MANIFEST.in' 2023-09-10T13:55:24,283 warning: no previously-included files matching '*' found under directory 'docs/' 2023-09-10T13:55:24,284 adding license file 'AUTHORS' 2023-09-10T13:55:24,385 writing manifest file 'Mikado.egg-info/SOURCES.txt' 2023-09-10T13:55:24,476 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.configuration.scoring_files' is absent from the `packages` configuration. 2023-09-10T13:55:24,476 !! 2023-09-10T13:55:24,478 ******************************************************************************** 2023-09-10T13:55:24,478 ############################ 2023-09-10T13:55:24,479 # Package would be ignored # 2023-09-10T13:55:24,479 ############################ 2023-09-10T13:55:24,480 Python recognizes 'Mikado.configuration.scoring_files' as an importable package[^1], 2023-09-10T13:55:24,480 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:55:24,481 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:55:24,482 package, please make sure that 'Mikado.configuration.scoring_files' is explicitly added 2023-09-10T13:55:24,482 to the `packages` configuration field. 2023-09-10T13:55:24,484 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:55:24,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:55:24,485 instead of `find_packages(...)`/`find:`). 2023-09-10T13:55:24,485 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:55:24,486 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:55:24,487 If you don't want 'Mikado.configuration.scoring_files' to be distributed and are 2023-09-10T13:55:24,487 already explicitly excluding 'Mikado.configuration.scoring_files' via 2023-09-10T13:55:24,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:55:24,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:55:24,488 combination with a more fine grained `package-data` configuration. 2023-09-10T13:55:24,489 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:55:24,490 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:55:24,491 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:55:24,491 even if it does not contain any `.py` files. 2023-09-10T13:55:24,492 On the other hand, currently there is no concept of package data 2023-09-10T13:55:24,492 directory, all directories are treated like packages. 2023-09-10T13:55:24,493 ******************************************************************************** 2023-09-10T13:55:24,494 !! 2023-09-10T13:55:24,494 check.warn(importable) 2023-09-10T13:55:24,495 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.__pycache__' is absent from the `packages` configuration. 2023-09-10T13:55:24,495 !! 2023-09-10T13:55:24,496 ******************************************************************************** 2023-09-10T13:55:24,497 ############################ 2023-09-10T13:55:24,498 # Package would be ignored # 2023-09-10T13:55:24,498 ############################ 2023-09-10T13:55:24,499 Python recognizes 'Mikado.tests.__pycache__' as an importable package[^1], 2023-09-10T13:55:24,499 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:55:24,500 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:55:24,501 package, please make sure that 'Mikado.tests.__pycache__' is explicitly added 2023-09-10T13:55:24,501 to the `packages` configuration field. 2023-09-10T13:55:24,503 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:55:24,503 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:55:24,503 instead of `find_packages(...)`/`find:`). 2023-09-10T13:55:24,504 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:55:24,505 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:55:24,506 If you don't want 'Mikado.tests.__pycache__' to be distributed and are 2023-09-10T13:55:24,507 already explicitly excluding 'Mikado.tests.__pycache__' via 2023-09-10T13:55:24,507 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:55:24,508 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:55:24,508 combination with a more fine grained `package-data` configuration. 2023-09-10T13:55:24,510 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:55:24,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:55:24,512 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:55:24,513 even if it does not contain any `.py` files. 2023-09-10T13:55:24,513 On the other hand, currently there is no concept of package data 2023-09-10T13:55:24,514 directory, all directories are treated like packages. 2023-09-10T13:55:24,514 ******************************************************************************** 2023-09-10T13:55:24,515 !! 2023-09-10T13:55:24,515 check.warn(importable) 2023-09-10T13:55:24,516 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Mikado.tests.fusion_test' is absent from the `packages` configuration. 2023-09-10T13:55:24,516 !! 2023-09-10T13:55:24,519 ******************************************************************************** 2023-09-10T13:55:24,524 ############################ 2023-09-10T13:55:24,527 # Package would be ignored # 2023-09-10T13:55:24,527 ############################ 2023-09-10T13:55:24,528 Python recognizes 'Mikado.tests.fusion_test' as an importable package[^1], 2023-09-10T13:55:24,528 but it is absent from setuptools' `packages` configuration. 2023-09-10T13:55:24,529 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-10T13:55:24,530 package, please make sure that 'Mikado.tests.fusion_test' is explicitly added 2023-09-10T13:55:24,530 to the `packages` configuration field. 2023-09-10T13:55:24,531 Alternatively, you can also rely on setuptools' discovery methods 2023-09-10T13:55:24,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-10T13:55:24,532 instead of `find_packages(...)`/`find:`). 2023-09-10T13:55:24,534 You can read more about "package discovery" on setuptools documentation page: 2023-09-10T13:55:24,537 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-10T13:55:24,538 If you don't want 'Mikado.tests.fusion_test' to be distributed and are 2023-09-10T13:55:24,538 already explicitly excluding 'Mikado.tests.fusion_test' via 2023-09-10T13:55:24,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-10T13:55:24,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-10T13:55:24,540 combination with a more fine grained `package-data` configuration. 2023-09-10T13:55:24,541 You can read more about "package data files" on setuptools documentation page: 2023-09-10T13:55:24,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-10T13:55:24,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-10T13:55:24,544 even if it does not contain any `.py` files. 2023-09-10T13:55:24,544 On the other hand, currently there is no concept of package data 2023-09-10T13:55:24,545 directory, all directories are treated like packages. 2023-09-10T13:55:24,546 ******************************************************************************** 2023-09-10T13:55:24,547 !! 2023-09-10T13:55:24,547 check.warn(importable) 2023-09-10T13:55:24,548 copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:24,548 copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:24,549 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:24,550 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:24,550 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:24,551 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:24,551 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:24,552 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:24,553 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:24,554 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-cpython-311/Mikado/daijin 2023-09-10T13:55:24,557 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:24,559 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:24,562 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:24,563 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-cpython-311/Mikado/configuration 2023-09-10T13:55:24,565 creating build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,566 copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,568 copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,570 copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,572 copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,574 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,576 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,578 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,580 copying Mikado/configuration/scoring_files/scerevisiae.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,582 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files 2023-09-10T13:55:24,584 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,594 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,596 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,598 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,604 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,606 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:24,608 copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,724 copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,727 copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,729 copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,731 copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,734 copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,740 copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,760 copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,785 copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,788 copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,790 copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,792 copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,794 copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,797 copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,799 copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,802 copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,805 copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,807 copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-cpython-311/Mikado/tests 2023-09-10T13:55:24,907 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,908 copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,910 copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,912 copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,914 copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,917 copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,920 copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,923 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,926 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,928 copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,931 copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,934 copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,938 copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,941 copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,944 copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,948 copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,951 copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,954 copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,956 copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,958 copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,960 copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,963 copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,965 copying Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,968 copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,970 copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,972 copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,974 copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,976 copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,978 copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,981 copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,983 copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,985 copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,988 copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,990 copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,992 copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,994 copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,996 copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:24,999 copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,001 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,003 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,006 copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,008 copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,011 copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,013 copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,015 copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,018 copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,021 copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,024 copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,026 copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,028 copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,030 copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,032 copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,035 copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,037 copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,040 copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,042 copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,045 copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,048 copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,051 copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,054 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,056 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,059 copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,062 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,064 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,067 copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,070 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,072 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,075 copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,078 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,081 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,085 copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,088 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,091 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,094 copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,097 copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,099 copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,102 copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__ 2023-09-10T13:55:25,104 creating build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:55:25,105 copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:55:25,107 copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:55:25,109 copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test 2023-09-10T13:55:25,120 running build_ext 2023-09-10T13:55:25,126 building 'Mikado.utilities.overlap' extension 2023-09-10T13:55:25,127 creating build/temp.linux-armv7l-cpython-311 2023-09-10T13:55:25,127 creating build/temp.linux-armv7l-cpython-311/Mikado 2023-09-10T13:55:25,128 creating build/temp.linux-armv7l-cpython-311/Mikado/utilities 2023-09-10T13:55:25,129 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o 2023-09-10T13:55:29,142 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/overlap.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:55:29,244 building 'Mikado.scales.f1' extension 2023-09-10T13:55:29,245 creating build/temp.linux-armv7l-cpython-311/Mikado/scales 2023-09-10T13:55:29,245 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o 2023-09-10T13:55:32,557 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/f1.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:55:32,657 building 'Mikado.scales.contrast' extension 2023-09-10T13:55:32,658 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o 2023-09-10T13:55:45,611 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/scales/contrast.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:55:45,729 building 'Mikado.utilities.intervaltree' extension 2023-09-10T13:55:45,730 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c Mikado/utilities/intervaltree.c -o build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o 2023-09-10T13:56:06,938 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so 2023-09-10T13:56:07,063 running build_scripts 2023-09-10T13:56:07,064 creating build/scripts-3.11 2023-09-10T13:56:07,065 copying and adjusting util/remove_from_embl.py -> build/scripts-3.11 2023-09-10T13:56:07,067 copying and adjusting util/merge_junction_bed12.py -> build/scripts-3.11 2023-09-10T13:56:07,069 copying and adjusting util/split_fasta.py -> build/scripts-3.11 2023-09-10T13:56:07,070 copying and adjusting util/sanitize_blast_db.py -> build/scripts-3.11 2023-09-10T13:56:07,072 copying and adjusting util/create_model.py -> build/scripts-3.11 2023-09-10T13:56:07,074 copying and adjusting util/grep.py -> build/scripts-3.11 2023-09-10T13:56:07,076 copying and adjusting util/extract_promoter_regions.py -> build/scripts-3.11 2023-09-10T13:56:07,078 copying and adjusting util/asm_collect.py -> build/scripts-3.11 2023-09-10T13:56:07,079 copying and adjusting util/class_run.py -> build/scripts-3.11 2023-09-10T13:56:07,081 copying and adjusting util/trim_long_introns.py -> build/scripts-3.11 2023-09-10T13:56:07,083 copying and adjusting util/add_transcript_feature_to_gtf.py -> build/scripts-3.11 2023-09-10T13:56:07,085 copying and adjusting util/convert_cdna_match_gff3.py -> build/scripts-3.11 2023-09-10T13:56:07,086 copying and adjusting util/calculate_distances.py -> build/scripts-3.11 2023-09-10T13:56:07,088 copying and adjusting util/self_training.py -> build/scripts-3.11 2023-09-10T13:56:07,090 copying and adjusting util/gffjunc_to_bed12.py -> build/scripts-3.11 2023-09-10T13:56:07,092 copying and adjusting util/remove_utrs.py -> build/scripts-3.11 2023-09-10T13:56:07,094 copying and adjusting util/align_collect.py -> build/scripts-3.11 2023-09-10T13:56:07,095 copying and adjusting util/analyse_metrics.py -> build/scripts-3.11 2023-09-10T13:56:07,097 copying util/tease_maker_apart.py -> build/scripts-3.11 2023-09-10T13:56:07,099 copying and adjusting util/getFastaFromIds.py -> build/scripts-3.11 2023-09-10T13:56:07,101 copying and adjusting util/bam2gtf.py -> build/scripts-3.11 2023-09-10T13:56:07,102 changing mode of build/scripts-3.11/remove_from_embl.py from 644 to 755 2023-09-10T13:56:07,103 changing mode of build/scripts-3.11/merge_junction_bed12.py from 644 to 755 2023-09-10T13:56:07,103 changing mode of build/scripts-3.11/split_fasta.py from 644 to 755 2023-09-10T13:56:07,104 changing mode of build/scripts-3.11/sanitize_blast_db.py from 644 to 755 2023-09-10T13:56:07,104 changing mode of build/scripts-3.11/create_model.py from 644 to 755 2023-09-10T13:56:07,105 changing mode of build/scripts-3.11/grep.py from 644 to 755 2023-09-10T13:56:07,106 changing mode of build/scripts-3.11/extract_promoter_regions.py from 644 to 755 2023-09-10T13:56:07,106 changing mode of build/scripts-3.11/asm_collect.py from 644 to 755 2023-09-10T13:56:07,107 changing mode of build/scripts-3.11/class_run.py from 644 to 755 2023-09-10T13:56:07,107 changing mode of build/scripts-3.11/trim_long_introns.py from 644 to 755 2023-09-10T13:56:07,108 changing mode of build/scripts-3.11/add_transcript_feature_to_gtf.py from 644 to 755 2023-09-10T13:56:07,108 changing mode of build/scripts-3.11/convert_cdna_match_gff3.py from 644 to 755 2023-09-10T13:56:07,109 changing mode of build/scripts-3.11/calculate_distances.py from 644 to 755 2023-09-10T13:56:07,109 changing mode of build/scripts-3.11/self_training.py from 644 to 755 2023-09-10T13:56:07,110 changing mode of build/scripts-3.11/gffjunc_to_bed12.py from 644 to 755 2023-09-10T13:56:07,110 changing mode of build/scripts-3.11/remove_utrs.py from 644 to 755 2023-09-10T13:56:07,111 changing mode of build/scripts-3.11/align_collect.py from 644 to 755 2023-09-10T13:56:07,111 changing mode of build/scripts-3.11/analyse_metrics.py from 644 to 755 2023-09-10T13:56:07,112 changing mode of build/scripts-3.11/tease_maker_apart.py from 644 to 755 2023-09-10T13:56:07,113 changing mode of build/scripts-3.11/getFastaFromIds.py from 644 to 755 2023-09-10T13:56:07,113 changing mode of build/scripts-3.11/bam2gtf.py from 644 to 755 2023-09-10T13:56:07,136 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-10T13:56:07,136 !! 2023-09-10T13:56:07,137 ******************************************************************************** 2023-09-10T13:56:07,138 Please avoid running ``setup.py`` directly. 2023-09-10T13:56:07,138 Instead, use pypa/build, pypa/installer or other 2023-09-10T13:56:07,139 standards-based tools. 2023-09-10T13:56:07,140 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-10T13:56:07,140 ******************************************************************************** 2023-09-10T13:56:07,141 !! 2023-09-10T13:56:07,142 self.initialize_options() 2023-09-10T13:56:07,160 installing to build/bdist.linux-armv7l/wheel 2023-09-10T13:56:07,161 running install 2023-09-10T13:56:07,185 running install_lib 2023-09-10T13:56:07,209 creating build/bdist.linux-armv7l 2023-09-10T13:56:07,210 creating build/bdist.linux-armv7l/wheel 2023-09-10T13:56:07,211 creating build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:56:07,213 creating build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,214 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,216 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,219 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pyx -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,221 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/log_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,223 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,230 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.c -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,247 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,252 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/overlap.pxd -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,254 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/dbutils.py -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,256 copying build/lib.linux-armv7l-cpython-311/Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/utilities 2023-09-10T13:56:07,271 creating build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,272 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,275 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,277 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/superlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,281 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/sublocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,284 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/reference_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,287 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/monosublocusholder.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,290 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/locus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,293 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/abstractlocus.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,297 copying build/lib.linux-armv7l-cpython-311/Mikado/loci/excluded.py -> build/bdist.linux-armv7l/wheel/Mikado/loci 2023-09-10T13:56:07,300 copying build/lib.linux-armv7l-cpython-311/Mikado/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:56:07,302 creating build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,304 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,307 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,309 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_xml.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,313 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/blast_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,316 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/gfannotation.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,319 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GFF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,321 copying build/lib.linux-armv7l-cpython-311/Mikado/parsers/GTF.py -> build/bdist.linux-armv7l/wheel/Mikado/parsers 2023-09-10T13:56:07,324 creating build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:56:07,326 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:56:07,328 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:56:07,331 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/annotation_parser.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:56:07,334 copying build/lib.linux-armv7l-cpython-311/Mikado/preparation/checking.py -> build/bdist.linux-armv7l/wheel/Mikado/preparation 2023-09-10T13:56:07,337 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:56:07,338 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:56:07,341 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:56:07,345 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcriptchecker.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:56:07,348 creating build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,350 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/finalizing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,353 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,355 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/retrieval.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,358 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,361 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/transcript_methods/printing.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts/transcript_methods 2023-09-10T13:56:07,364 copying build/lib.linux-armv7l-cpython-311/Mikado/transcripts/clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/transcripts 2023-09-10T13:56:07,367 copying build/lib.linux-armv7l-cpython-311/Mikado/exceptions.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:56:07,370 creating build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,371 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,374 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/example_config.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,377 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/mikado.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,379 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.yaml -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,381 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/hpc.json -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,383 copying build/lib.linux-armv7l-cpython-311/Mikado/daijin/tr.snakefile -> build/bdist.linux-armv7l/wheel/Mikado/daijin 2023-09-10T13:56:07,387 creating build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:56:07,388 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:56:07,390 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/loci_processer.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:56:07,393 copying build/lib.linux-armv7l-cpython-311/Mikado/picking/picker.py -> build/bdist.linux-armv7l/wheel/Mikado/picking 2023-09-10T13:56:07,397 creating build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:56:07,398 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/junction.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:56:07,401 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:56:07,403 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/external.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:56:07,405 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/orf.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers 2023-09-10T13:56:07,408 creating build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,410 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/target.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,412 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,414 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/utils.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,417 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/xml_serialiser.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,420 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hsp.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,423 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/query.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,425 copying build/lib.linux-armv7l-cpython-311/Mikado/serializers/blast_serializer/hit.py -> build/bdist.linux-armv7l/wheel/Mikado/serializers/blast_serializer 2023-09-10T13:56:07,436 creating build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,438 creating build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,439 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/plants.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,441 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/insects.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,444 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/worm.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,446 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,448 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/scerevisiae.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,450 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,452 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,454 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/human.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,456 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/bdist.linux-armv7l/wheel/Mikado/configuration/scoring_files 2023-09-10T13:56:07,458 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,461 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_schema.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,463 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/daijin_configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,466 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/requirements_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,468 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/scoring_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,470 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configurator.py -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,473 copying build/lib.linux-armv7l-cpython-311/Mikado/configuration/configuration_blueprint.json -> build/bdist.linux-armv7l/wheel/Mikado/configuration 2023-09-10T13:56:07,477 creating build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,478 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,480 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,483 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/assigner.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,486 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,488 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pyx -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,491 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,497 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.pxd -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,499 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,502 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,505 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/f1.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,516 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,534 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/resultstorer.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,537 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/accountant.py -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,541 copying build/lib.linux-armv7l-cpython-311/Mikado/scales/contrast.c -> build/bdist.linux-armv7l/wheel/Mikado/scales 2023-09-10T13:56:07,557 copying build/lib.linux-armv7l-cpython-311/Mikado/version.py -> build/bdist.linux-armv7l/wheel/Mikado 2023-09-10T13:56:07,561 creating build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,563 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/orf_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,567 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,570 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/locus_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,575 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.cDNA_match.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,578 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_external_scores.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,581 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/configuration.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,584 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.xml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,613 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_clique_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,615 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity_stats.txt -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,618 creating build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:56:07,619 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:56:07,622 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test.log -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:56:07,624 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests/fusion_test 2023-09-10T13:56:07,626 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/assigner_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,629 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/junctions.bed -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,632 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,635 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,638 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado_prepared.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,641 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_modifications.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,643 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,740 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_system_calls.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,743 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/cufflinks.gtf -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,745 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.suspicious_requirement.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,747 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_splitting.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,751 creating build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,752 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,754 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,756 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,758 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,761 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,763 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,766 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,767 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,769 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,771 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,774 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,776 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,779 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,781 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,782 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,784 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,787 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,789 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,792 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,794 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,796 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,798 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,801 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,804 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,806 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,808 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,810 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,812 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,815 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,817 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,820 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,822 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,824 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,827 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,829 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,831 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,834 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,836 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,838 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,841 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,843 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,845 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,848 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,850 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,852 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,853 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,855 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,857 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,859 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,861 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,863 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,866 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,868 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,869 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,872 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,875 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,877 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,878 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,881 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,884 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,885 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,888 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,890 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,892 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,894 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,897 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,899 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,901 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,902 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,905 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,907 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_bed12.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,909 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,911 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,913 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,915 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,918 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/bdist.linux-armv7l/wheel/Mikado/tests/__pycache__ 2023-09-10T13:56:07,920 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,923 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/parser_testing.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,925 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/trinity.match_matchpart.gff3 -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,928 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_single.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,930 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_serialisation.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,933 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/genome.fai -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,934 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_blast_related.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,936 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_checker.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,938 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_db_utils.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,941 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_invalid_orfs.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,943 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_json.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,945 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_transcript_methods.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,948 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/plants.yaml~ -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,949 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/utilities_tester.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,952 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:07,954 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/chr5.fas.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,079 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_positive.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,083 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/scoring_only_cds.yaml -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,085 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.blast.asn.gz -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,091 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/intervaltree_tests.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,094 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/mikado.db -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,120 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/transcript_tester_negative.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,123 copying build/lib.linux-armv7l-cpython-311/Mikado/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/Mikado/tests 2023-09-10T13:56:08,125 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,127 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/pick.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,130 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,132 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/prepare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,135 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/configure.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,138 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/compare.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,141 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/serialise.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,145 creating build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,146 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/__init__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,148 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/grep.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,150 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/stats.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,153 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/class_codes.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,156 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/trim.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,158 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/merge_blast.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,160 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/metrics.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,162 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/awk_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,164 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/util/convert.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms/util 2023-09-10T13:56:08,166 copying build/lib.linux-armv7l-cpython-311/Mikado/subprograms/__main__.py -> build/bdist.linux-armv7l/wheel/Mikado/subprograms 2023-09-10T13:56:08,168 running install_egg_info 2023-09-10T13:56:08,198 Copying Mikado.egg-info to build/bdist.linux-armv7l/wheel/Mikado-1.2.2-py3.11.egg-info 2023-09-10T13:56:08,215 running install_scripts 2023-09-10T13:56:08,216 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data 2023-09-10T13:56:08,216 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,218 copying build/scripts-3.11/remove_from_embl.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,219 copying build/scripts-3.11/merge_junction_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,221 copying build/scripts-3.11/split_fasta.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,223 copying build/scripts-3.11/sanitize_blast_db.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,225 copying build/scripts-3.11/create_model.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,227 copying build/scripts-3.11/grep.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,229 copying build/scripts-3.11/extract_promoter_regions.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,231 copying build/scripts-3.11/asm_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,233 copying build/scripts-3.11/class_run.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,235 copying build/scripts-3.11/trim_long_introns.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,237 copying build/scripts-3.11/add_transcript_feature_to_gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,239 copying build/scripts-3.11/convert_cdna_match_gff3.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,241 copying build/scripts-3.11/calculate_distances.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,244 copying build/scripts-3.11/self_training.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,246 copying build/scripts-3.11/gffjunc_to_bed12.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,248 copying build/scripts-3.11/remove_utrs.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,250 copying build/scripts-3.11/align_collect.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,252 copying build/scripts-3.11/analyse_metrics.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,254 copying build/scripts-3.11/tease_maker_apart.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,256 copying build/scripts-3.11/getFastaFromIds.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,258 copying build/scripts-3.11/bam2gtf.py -> build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts 2023-09-10T13:56:08,260 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/remove_from_embl.py to 755 2023-09-10T13:56:08,260 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/merge_junction_bed12.py to 755 2023-09-10T13:56:08,261 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/split_fasta.py to 755 2023-09-10T13:56:08,262 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/sanitize_blast_db.py to 755 2023-09-10T13:56:08,262 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/create_model.py to 755 2023-09-10T13:56:08,263 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/grep.py to 755 2023-09-10T13:56:08,263 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/extract_promoter_regions.py to 755 2023-09-10T13:56:08,264 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/asm_collect.py to 755 2023-09-10T13:56:08,264 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/class_run.py to 755 2023-09-10T13:56:08,265 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/trim_long_introns.py to 755 2023-09-10T13:56:08,265 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/add_transcript_feature_to_gtf.py to 755 2023-09-10T13:56:08,266 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/convert_cdna_match_gff3.py to 755 2023-09-10T13:56:08,266 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/calculate_distances.py to 755 2023-09-10T13:56:08,267 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/self_training.py to 755 2023-09-10T13:56:08,267 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/gffjunc_to_bed12.py to 755 2023-09-10T13:56:08,267 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/remove_utrs.py to 755 2023-09-10T13:56:08,268 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/align_collect.py to 755 2023-09-10T13:56:08,268 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/analyse_metrics.py to 755 2023-09-10T13:56:08,269 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/tease_maker_apart.py to 755 2023-09-10T13:56:08,269 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/getFastaFromIds.py to 755 2023-09-10T13:56:08,270 changing mode of build/bdist.linux-armv7l/wheel/Mikado-1.2.2.data/scripts/bam2gtf.py to 755 2023-09-10T13:56:08,333 creating build/bdist.linux-armv7l/wheel/Mikado-1.2.2.dist-info/WHEEL 2023-09-10T13:56:08,335 creating '/tmp/pip-wheel-cpafoc9m/Mikado-1.2.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-10T13:56:08,339 adding 'Mikado/__init__.py' 2023-09-10T13:56:08,340 adding 'Mikado/exceptions.py' 2023-09-10T13:56:08,342 adding 'Mikado/version.py' 2023-09-10T13:56:08,344 adding 'Mikado/configuration/__init__.py' 2023-09-10T13:56:08,349 adding 'Mikado/configuration/configuration_blueprint.json' 2023-09-10T13:56:08,354 adding 'Mikado/configuration/configurator.py' 2023-09-10T13:56:08,357 adding 'Mikado/configuration/daijin_configurator.py' 2023-09-10T13:56:08,359 adding 'Mikado/configuration/daijin_schema.json' 2023-09-10T13:56:08,361 adding 'Mikado/configuration/requirements_blueprint.json' 2023-09-10T13:56:08,363 adding 'Mikado/configuration/scoring_blueprint.json' 2023-09-10T13:56:08,365 adding 'Mikado/configuration/scoring_files/athaliana_scoring.yaml' 2023-09-10T13:56:08,367 adding 'Mikado/configuration/scoring_files/celegans_scoring.yaml' 2023-09-10T13:56:08,369 adding 'Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml' 2023-09-10T13:56:08,371 adding 'Mikado/configuration/scoring_files/hsapiens_scoring.yaml' 2023-09-10T13:56:08,372 adding 'Mikado/configuration/scoring_files/human.yaml' 2023-09-10T13:56:08,374 adding 'Mikado/configuration/scoring_files/insects.yaml' 2023-09-10T13:56:08,376 adding 'Mikado/configuration/scoring_files/plants.yaml' 2023-09-10T13:56:08,378 adding 'Mikado/configuration/scoring_files/scerevisiae.yaml' 2023-09-10T13:56:08,379 adding 'Mikado/configuration/scoring_files/worm.yaml' 2023-09-10T13:56:08,384 adding 'Mikado/daijin/__init__.py' 2023-09-10T13:56:08,386 adding 'Mikado/daijin/example_config.yaml' 2023-09-10T13:56:08,388 adding 'Mikado/daijin/hpc.json' 2023-09-10T13:56:08,389 adding 'Mikado/daijin/hpc.yaml' 2023-09-10T13:56:08,392 adding 'Mikado/daijin/mikado.snakefile' 2023-09-10T13:56:08,398 adding 'Mikado/daijin/tr.snakefile' 2023-09-10T13:56:08,400 adding 'Mikado/loci/__init__.py' 2023-09-10T13:56:08,410 adding 'Mikado/loci/abstractlocus.py' 2023-09-10T13:56:08,413 adding 'Mikado/loci/excluded.py' 2023-09-10T13:56:08,418 adding 'Mikado/loci/locus.py' 2023-09-10T13:56:08,421 adding 'Mikado/loci/monosublocus.py' 2023-09-10T13:56:08,423 adding 'Mikado/loci/monosublocusholder.py' 2023-09-10T13:56:08,426 adding 'Mikado/loci/reference_gene.py' 2023-09-10T13:56:08,428 adding 'Mikado/loci/sublocus.py' 2023-09-10T13:56:08,434 adding 'Mikado/loci/superlocus.py' 2023-09-10T13:56:08,436 adding 'Mikado/parsers/GFF.py' 2023-09-10T13:56:08,438 adding 'Mikado/parsers/GTF.py' 2023-09-10T13:56:08,439 adding 'Mikado/parsers/__init__.py' 2023-09-10T13:56:08,443 adding 'Mikado/parsers/bed12.py' 2023-09-10T13:56:08,446 adding 'Mikado/parsers/blast_utils.py' 2023-09-10T13:56:08,450 adding 'Mikado/parsers/blast_xml.py' 2023-09-10T13:56:08,452 adding 'Mikado/parsers/gfannotation.py' 2023-09-10T13:56:08,454 adding 'Mikado/picking/__init__.py' 2023-09-10T13:56:08,458 adding 'Mikado/picking/loci_processer.py' 2023-09-10T13:56:08,463 adding 'Mikado/picking/picker.py' 2023-09-10T13:56:08,465 adding 'Mikado/preparation/__init__.py' 2023-09-10T13:56:08,467 adding 'Mikado/preparation/annotation_parser.py' 2023-09-10T13:56:08,469 adding 'Mikado/preparation/checking.py' 2023-09-10T13:56:08,471 adding 'Mikado/preparation/prepare.py' 2023-09-10T13:56:08,473 adding 'Mikado/scales/__init__.py' 2023-09-10T13:56:08,477 adding 'Mikado/scales/accountant.py' 2023-09-10T13:56:08,481 adding 'Mikado/scales/assigner.py' 2023-09-10T13:56:08,484 adding 'Mikado/scales/class_codes.py' 2023-09-10T13:56:08,486 adding 'Mikado/scales/compare.py' 2023-09-10T13:56:08,531 adding 'Mikado/scales/contrast.c' 2023-09-10T13:56:08,643 adding 'Mikado/scales/contrast.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:56:08,649 adding 'Mikado/scales/contrast.pxd' 2023-09-10T13:56:08,651 adding 'Mikado/scales/contrast.pyx' 2023-09-10T13:56:08,677 adding 'Mikado/scales/f1.c' 2023-09-10T13:56:08,717 adding 'Mikado/scales/f1.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:56:08,720 adding 'Mikado/scales/f1.pxd' 2023-09-10T13:56:08,721 adding 'Mikado/scales/f1.pyx' 2023-09-10T13:56:08,723 adding 'Mikado/scales/resultstorer.py' 2023-09-10T13:56:08,725 adding 'Mikado/serializers/__init__.py' 2023-09-10T13:56:08,726 adding 'Mikado/serializers/external.py' 2023-09-10T13:56:08,728 adding 'Mikado/serializers/junction.py' 2023-09-10T13:56:08,730 adding 'Mikado/serializers/orf.py' 2023-09-10T13:56:08,732 adding 'Mikado/serializers/blast_serializer/__init__.py' 2023-09-10T13:56:08,734 adding 'Mikado/serializers/blast_serializer/hit.py' 2023-09-10T13:56:08,735 adding 'Mikado/serializers/blast_serializer/hsp.py' 2023-09-10T13:56:08,736 adding 'Mikado/serializers/blast_serializer/query.py' 2023-09-10T13:56:08,738 adding 'Mikado/serializers/blast_serializer/target.py' 2023-09-10T13:56:08,739 adding 'Mikado/serializers/blast_serializer/utils.py' 2023-09-10T13:56:08,743 adding 'Mikado/serializers/blast_serializer/xml_serialiser.py' 2023-09-10T13:56:08,745 adding 'Mikado/subprograms/__init__.py' 2023-09-10T13:56:08,746 adding 'Mikado/subprograms/__main__.py' 2023-09-10T13:56:08,748 adding 'Mikado/subprograms/compare.py' 2023-09-10T13:56:08,750 adding 'Mikado/subprograms/configure.py' 2023-09-10T13:56:08,752 adding 'Mikado/subprograms/pick.py' 2023-09-10T13:56:08,754 adding 'Mikado/subprograms/prepare.py' 2023-09-10T13:56:08,756 adding 'Mikado/subprograms/serialise.py' 2023-09-10T13:56:08,758 adding 'Mikado/subprograms/util/__init__.py' 2023-09-10T13:56:08,760 adding 'Mikado/subprograms/util/awk_gtf.py' 2023-09-10T13:56:08,761 adding 'Mikado/subprograms/util/class_codes.py' 2023-09-10T13:56:08,763 adding 'Mikado/subprograms/util/convert.py' 2023-09-10T13:56:08,764 adding 'Mikado/subprograms/util/grep.py' 2023-09-10T13:56:08,765 adding 'Mikado/subprograms/util/merge_blast.py' 2023-09-10T13:56:08,767 adding 'Mikado/subprograms/util/metrics.py' 2023-09-10T13:56:08,770 adding 'Mikado/subprograms/util/stats.py' 2023-09-10T13:56:08,772 adding 'Mikado/subprograms/util/trim.py' 2023-09-10T13:56:08,774 adding 'Mikado/tests/__init__.py' 2023-09-10T13:56:08,777 adding 'Mikado/tests/assigner_tester.py' 2023-09-10T13:56:09,675 adding 'Mikado/tests/chr5.fas.gz' 2023-09-10T13:56:09,742 adding 'Mikado/tests/configuration.yaml' 2023-09-10T13:56:09,744 adding 'Mikado/tests/cufflinks.gtf' 2023-09-10T13:56:09,745 adding 'Mikado/tests/genome.fai' 2023-09-10T13:56:09,746 adding 'Mikado/tests/intervaltree_tests.py' 2023-09-10T13:56:09,752 adding 'Mikado/tests/junctions.bed' 2023-09-10T13:56:09,758 adding 'Mikado/tests/locus_tester.py' 2023-09-10T13:56:09,784 adding 'Mikado/tests/mikado.blast.asn.gz' 2023-09-10T13:56:09,839 adding 'Mikado/tests/mikado.blast.xml' 2023-09-10T13:56:10,115 adding 'Mikado/tests/mikado.db' 2023-09-10T13:56:10,133 adding 'Mikado/tests/mikado_prepared.gtf' 2023-09-10T13:56:10,139 adding 'Mikado/tests/orf_tester.py' 2023-09-10T13:56:10,141 adding 'Mikado/tests/parser_testing.py' 2023-09-10T13:56:10,142 adding 'Mikado/tests/plants.suspicious_requirement.yaml' 2023-09-10T13:56:10,143 adding 'Mikado/tests/plants.yaml~' 2023-09-10T13:56:10,144 adding 'Mikado/tests/scoring_only_cds.yaml' 2023-09-10T13:56:10,146 adding 'Mikado/tests/test_bed12.py' 2023-09-10T13:56:10,148 adding 'Mikado/tests/test_blast_related.py' 2023-09-10T13:56:10,149 adding 'Mikado/tests/test_clique_methods.py' 2023-09-10T13:56:10,151 adding 'Mikado/tests/test_db_utils.py' 2023-09-10T13:56:10,152 adding 'Mikado/tests/test_external_scores.py' 2023-09-10T13:56:10,153 adding 'Mikado/tests/test_gene.py' 2023-09-10T13:56:10,154 adding 'Mikado/tests/test_invalid_orfs.py' 2023-09-10T13:56:10,156 adding 'Mikado/tests/test_json.py' 2023-09-10T13:56:10,157 adding 'Mikado/tests/test_metrics.py' 2023-09-10T13:56:10,159 adding 'Mikado/tests/test_modifications.py' 2023-09-10T13:56:10,160 adding 'Mikado/tests/test_serialisation.py' 2023-09-10T13:56:10,162 adding 'Mikado/tests/test_splitting.py' 2023-09-10T13:56:10,165 adding 'Mikado/tests/test_system_calls.py' 2023-09-10T13:56:10,167 adding 'Mikado/tests/test_transcript_checker.py' 2023-09-10T13:56:10,169 adding 'Mikado/tests/test_transcript_methods.py' 2023-09-10T13:56:10,171 adding 'Mikado/tests/transcript_tester_negative.py' 2023-09-10T13:56:10,175 adding 'Mikado/tests/transcript_tester_positive.py' 2023-09-10T13:56:10,179 adding 'Mikado/tests/transcript_tester_single.py' 2023-09-10T13:56:10,181 adding 'Mikado/tests/trinity.cDNA_match.gff3' 2023-09-10T13:56:10,183 adding 'Mikado/tests/trinity.gff3' 2023-09-10T13:56:10,185 adding 'Mikado/tests/trinity.gtf' 2023-09-10T13:56:10,187 adding 'Mikado/tests/trinity.match_matchpart.gff3' 2023-09-10T13:56:10,189 adding 'Mikado/tests/trinity_stats.txt' 2023-09-10T13:56:10,925 adding 'Mikado/tests/uniprot_sprot_plants.fasta.gz' 2023-09-10T13:56:10,980 adding 'Mikado/tests/utilities_tester.py' 2023-09-10T13:56:10,983 adding 'Mikado/tests/__pycache__/__init__.cpython-34.pyc' 2023-09-10T13:56:10,984 adding 'Mikado/tests/__pycache__/__init__.cpython-35.pyc' 2023-09-10T13:56:10,985 adding 'Mikado/tests/__pycache__/__init__.cpython-36.pyc' 2023-09-10T13:56:10,989 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc' 2023-09-10T13:56:10,994 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc' 2023-09-10T13:56:10,998 adding 'Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc' 2023-09-10T13:56:11,000 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc' 2023-09-10T13:56:11,002 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc' 2023-09-10T13:56:11,004 adding 'Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc' 2023-09-10T13:56:11,013 adding 'Mikado/tests/__pycache__/locus_tester.cpython-34.pyc' 2023-09-10T13:56:11,021 adding 'Mikado/tests/__pycache__/locus_tester.cpython-35.pyc' 2023-09-10T13:56:11,029 adding 'Mikado/tests/__pycache__/locus_tester.cpython-36.pyc' 2023-09-10T13:56:11,036 adding 'Mikado/tests/__pycache__/orf_tester.cpython-34.pyc' 2023-09-10T13:56:11,042 adding 'Mikado/tests/__pycache__/orf_tester.cpython-35.pyc' 2023-09-10T13:56:11,048 adding 'Mikado/tests/__pycache__/orf_tester.cpython-36.pyc' 2023-09-10T13:56:11,049 adding 'Mikado/tests/__pycache__/parser_testing.cpython-34.pyc' 2023-09-10T13:56:11,050 adding 'Mikado/tests/__pycache__/parser_testing.cpython-35.pyc' 2023-09-10T13:56:11,052 adding 'Mikado/tests/__pycache__/parser_testing.cpython-36.pyc' 2023-09-10T13:56:11,053 adding 'Mikado/tests/__pycache__/phases_checker.cpython-34.pyc' 2023-09-10T13:56:11,055 adding 'Mikado/tests/__pycache__/phases_checker.cpython-35.pyc' 2023-09-10T13:56:11,057 adding 'Mikado/tests/__pycache__/system_checks.cpython-35.pyc' 2023-09-10T13:56:11,059 adding 'Mikado/tests/__pycache__/test_bed12.cpython-36.pyc' 2023-09-10T13:56:11,061 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc' 2023-09-10T13:56:11,062 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc' 2023-09-10T13:56:11,064 adding 'Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc' 2023-09-10T13:56:11,065 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc' 2023-09-10T13:56:11,067 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc' 2023-09-10T13:56:11,068 adding 'Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc' 2023-09-10T13:56:11,070 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc' 2023-09-10T13:56:11,071 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc' 2023-09-10T13:56:11,073 adding 'Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc' 2023-09-10T13:56:11,074 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc' 2023-09-10T13:56:11,075 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc' 2023-09-10T13:56:11,076 adding 'Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc' 2023-09-10T13:56:11,078 adding 'Mikado/tests/__pycache__/test_gene.cpython-34.pyc' 2023-09-10T13:56:11,079 adding 'Mikado/tests/__pycache__/test_gene.cpython-35.pyc' 2023-09-10T13:56:11,080 adding 'Mikado/tests/__pycache__/test_gene.cpython-36.pyc' 2023-09-10T13:56:11,082 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc' 2023-09-10T13:56:11,083 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc' 2023-09-10T13:56:11,085 adding 'Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc' 2023-09-10T13:56:11,086 adding 'Mikado/tests/__pycache__/test_json.cpython-34.pyc' 2023-09-10T13:56:11,088 adding 'Mikado/tests/__pycache__/test_json.cpython-35.pyc' 2023-09-10T13:56:11,089 adding 'Mikado/tests/__pycache__/test_json.cpython-36.pyc' 2023-09-10T13:56:11,091 adding 'Mikado/tests/__pycache__/test_metrics.cpython-34.pyc' 2023-09-10T13:56:11,092 adding 'Mikado/tests/__pycache__/test_metrics.cpython-35.pyc' 2023-09-10T13:56:11,094 adding 'Mikado/tests/__pycache__/test_metrics.cpython-36.pyc' 2023-09-10T13:56:11,096 adding 'Mikado/tests/__pycache__/test_modifications.cpython-34.pyc' 2023-09-10T13:56:11,097 adding 'Mikado/tests/__pycache__/test_modifications.cpython-35.pyc' 2023-09-10T13:56:11,099 adding 'Mikado/tests/__pycache__/test_modifications.cpython-36.pyc' 2023-09-10T13:56:11,100 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc' 2023-09-10T13:56:11,102 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc' 2023-09-10T13:56:11,104 adding 'Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc' 2023-09-10T13:56:11,106 adding 'Mikado/tests/__pycache__/test_splitting.cpython-34.pyc' 2023-09-10T13:56:11,108 adding 'Mikado/tests/__pycache__/test_splitting.cpython-35.pyc' 2023-09-10T13:56:11,110 adding 'Mikado/tests/__pycache__/test_splitting.cpython-36.pyc' 2023-09-10T13:56:11,114 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc' 2023-09-10T13:56:11,119 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc' 2023-09-10T13:56:11,123 adding 'Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc' 2023-09-10T13:56:11,125 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc' 2023-09-10T13:56:11,127 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc' 2023-09-10T13:56:11,129 adding 'Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc' 2023-09-10T13:56:11,131 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc' 2023-09-10T13:56:11,134 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc' 2023-09-10T13:56:11,136 adding 'Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc' 2023-09-10T13:56:11,139 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc' 2023-09-10T13:56:11,142 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc' 2023-09-10T13:56:11,146 adding 'Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc' 2023-09-10T13:56:11,151 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc' 2023-09-10T13:56:11,157 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc' 2023-09-10T13:56:11,162 adding 'Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc' 2023-09-10T13:56:11,166 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc' 2023-09-10T13:56:11,170 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc' 2023-09-10T13:56:11,173 adding 'Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc' 2023-09-10T13:56:11,175 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc' 2023-09-10T13:56:11,177 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc' 2023-09-10T13:56:11,179 adding 'Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc' 2023-09-10T13:56:11,181 adding 'Mikado/tests/fusion_test/fusion_test.log' 2023-09-10T13:56:11,182 adding 'Mikado/tests/fusion_test/fusion_test_pred.gtf' 2023-09-10T13:56:11,184 adding 'Mikado/tests/fusion_test/fusion_test_ref.gff3' 2023-09-10T13:56:11,185 adding 'Mikado/transcripts/__init__.py' 2023-09-10T13:56:11,187 adding 'Mikado/transcripts/clique_methods.py' 2023-09-10T13:56:11,198 adding 'Mikado/transcripts/transcript.py' 2023-09-10T13:56:11,201 adding 'Mikado/transcripts/transcriptchecker.py' 2023-09-10T13:56:11,203 adding 'Mikado/transcripts/transcript_methods/__init__.py' 2023-09-10T13:56:11,206 adding 'Mikado/transcripts/transcript_methods/finalizing.py' 2023-09-10T13:56:11,208 adding 'Mikado/transcripts/transcript_methods/printing.py' 2023-09-10T13:56:11,211 adding 'Mikado/transcripts/transcript_methods/retrieval.py' 2023-09-10T13:56:11,216 adding 'Mikado/transcripts/transcript_methods/splitting.py' 2023-09-10T13:56:11,218 adding 'Mikado/utilities/__init__.py' 2023-09-10T13:56:11,219 adding 'Mikado/utilities/dbutils.py' 2023-09-10T13:56:11,285 adding 'Mikado/utilities/intervaltree.c' 2023-09-10T13:56:11,474 adding 'Mikado/utilities/intervaltree.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:56:11,483 adding 'Mikado/utilities/intervaltree.pyx' 2023-09-10T13:56:11,485 adding 'Mikado/utilities/log_utils.py' 2023-09-10T13:56:11,510 adding 'Mikado/utilities/overlap.c' 2023-09-10T13:56:11,557 adding 'Mikado/utilities/overlap.cpython-311-arm-linux-gnueabihf.so' 2023-09-10T13:56:11,560 adding 'Mikado/utilities/overlap.pxd' 2023-09-10T13:56:11,561 adding 'Mikado/utilities/overlap.pyx' 2023-09-10T13:56:11,564 adding 'Mikado-1.2.2.data/scripts/add_transcript_feature_to_gtf.py' 2023-09-10T13:56:11,565 adding 'Mikado-1.2.2.data/scripts/align_collect.py' 2023-09-10T13:56:11,566 adding 'Mikado-1.2.2.data/scripts/analyse_metrics.py' 2023-09-10T13:56:11,568 adding 'Mikado-1.2.2.data/scripts/asm_collect.py' 2023-09-10T13:56:11,569 adding 'Mikado-1.2.2.data/scripts/bam2gtf.py' 2023-09-10T13:56:11,571 adding 'Mikado-1.2.2.data/scripts/calculate_distances.py' 2023-09-10T13:56:11,572 adding 'Mikado-1.2.2.data/scripts/class_run.py' 2023-09-10T13:56:11,574 adding 'Mikado-1.2.2.data/scripts/convert_cdna_match_gff3.py' 2023-09-10T13:56:11,575 adding 'Mikado-1.2.2.data/scripts/create_model.py' 2023-09-10T13:56:11,577 adding 'Mikado-1.2.2.data/scripts/extract_promoter_regions.py' 2023-09-10T13:56:11,578 adding 'Mikado-1.2.2.data/scripts/getFastaFromIds.py' 2023-09-10T13:56:11,580 adding 'Mikado-1.2.2.data/scripts/gffjunc_to_bed12.py' 2023-09-10T13:56:11,581 adding 'Mikado-1.2.2.data/scripts/grep.py' 2023-09-10T13:56:11,583 adding 'Mikado-1.2.2.data/scripts/merge_junction_bed12.py' 2023-09-10T13:56:11,584 adding 'Mikado-1.2.2.data/scripts/remove_from_embl.py' 2023-09-10T13:56:11,585 adding 'Mikado-1.2.2.data/scripts/remove_utrs.py' 2023-09-10T13:56:11,587 adding 'Mikado-1.2.2.data/scripts/sanitize_blast_db.py' 2023-09-10T13:56:11,588 adding 'Mikado-1.2.2.data/scripts/self_training.py' 2023-09-10T13:56:11,590 adding 'Mikado-1.2.2.data/scripts/split_fasta.py' 2023-09-10T13:56:11,591 adding 'Mikado-1.2.2.data/scripts/tease_maker_apart.py' 2023-09-10T13:56:11,593 adding 'Mikado-1.2.2.data/scripts/trim_long_introns.py' 2023-09-10T13:56:11,595 adding 'Mikado-1.2.2.dist-info/AUTHORS' 2023-09-10T13:56:11,596 adding 'Mikado-1.2.2.dist-info/METADATA' 2023-09-10T13:56:11,597 adding 'Mikado-1.2.2.dist-info/WHEEL' 2023-09-10T13:56:11,598 adding 'Mikado-1.2.2.dist-info/entry_points.txt' 2023-09-10T13:56:11,599 adding 'Mikado-1.2.2.dist-info/top_level.txt' 2023-09-10T13:56:11,603 adding 'Mikado-1.2.2.dist-info/RECORD' 2023-09-10T13:56:11,805 removing build/bdist.linux-armv7l/wheel 2023-09-10T13:56:12,015 Building wheel for mikado (setup.py): finished with status 'done' 2023-09-10T13:56:12,225 Created wheel for mikado: filename=Mikado-1.2.2-cp311-cp311-linux_armv7l.whl size=17643256 sha256=69c57b0a7e661700c4d7c775e26f5acf8fc27f2732d78c6325ecbf52106b4225 2023-09-10T13:56:12,226 Stored in directory: /tmp/pip-ephem-wheel-cache-d_e3aa00/wheels/4b/e0/2f/b1c1923bd503f47e2a1f92accc670121f12d33b56c3f22ffb9 2023-09-10T13:56:12,250 Successfully built mikado 2023-09-10T13:56:12,689 Removed build tracker: '/tmp/pip-build-tracker-3jgob5nv'