2023-09-10T15:39:51,487 Created temporary directory: /tmp/pip-build-tracker-v5i7tkqx
2023-09-10T15:39:51,488 Initialized build tracking at /tmp/pip-build-tracker-v5i7tkqx
2023-09-10T15:39:51,489 Created build tracker: /tmp/pip-build-tracker-v5i7tkqx
2023-09-10T15:39:51,489 Entered build tracker: /tmp/pip-build-tracker-v5i7tkqx
2023-09-10T15:39:51,490 Created temporary directory: /tmp/pip-wheel-lcrd1yvw
2023-09-10T15:39:51,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-ti9vc94o
2023-09-10T15:39:51,516 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-10T15:39:51,519 2 location(s) to search for versions of ampal:
2023-09-10T15:39:51,519 * https://pypi.org/simple/ampal/
2023-09-10T15:39:51,519 * https://www.piwheels.org/simple/ampal/
2023-09-10T15:39:51,520 Fetching project page and analyzing links: https://pypi.org/simple/ampal/
2023-09-10T15:39:51,521 Getting page https://pypi.org/simple/ampal/
2023-09-10T15:39:51,523 Found index url https://pypi.org/simple/
2023-09-10T15:39:51,662 Fetched page https://pypi.org/simple/ampal/ as application/vnd.pypi.simple.v1+json
2023-09-10T15:39:51,664   Found link https://files.pythonhosted.org/packages/3f/e5/03da3a77bba138c165451d3f8efb7fd32818aea4a6212b420c558e9088d8/AMPAL-1.0.0.tar.gz (from https://pypi.org/simple/ampal/), version: 1.0.0
2023-09-10T15:39:51,664   Found link https://files.pythonhosted.org/packages/c2/90/2aecb8bdeab8de4f896f38fc792b434292f0f96a86cd3b860c849f4cfd55/AMPAL-1.0.1.tar.gz (from https://pypi.org/simple/ampal/), version: 1.0.1
2023-09-10T15:39:51,665   Found link https://files.pythonhosted.org/packages/29/39/ac32680ba515731a81942c3a1bb8d0731fc0da02185885794ccf51dd604b/AMPAL-1.1.0.tar.gz (from https://pypi.org/simple/ampal/), version: 1.1.0
2023-09-10T15:39:51,666   Found link https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz (from https://pypi.org/simple/ampal/), version: 1.2.0
2023-09-10T15:39:51,666   Found link https://files.pythonhosted.org/packages/a4/9a/940d9cd5af9177e35487a99bf8bf0ae4c80b28eeca70c266ebc2f341cd4d/AMPAL-1.3.0.tar.gz (from https://pypi.org/simple/ampal/), version: 1.3.0
2023-09-10T15:39:51,667   Found link https://files.pythonhosted.org/packages/c9/14/728e14ff9e6c3372082ffc88a2f78016b05143f0d6bee5c432c002314169/AMPAL-1.4.0.tar.gz (from https://pypi.org/simple/ampal/), version: 1.4.0
2023-09-10T15:39:51,668 Fetching project page and analyzing links: https://www.piwheels.org/simple/ampal/
2023-09-10T15:39:51,668 Getting page https://www.piwheels.org/simple/ampal/
2023-09-10T15:39:51,670 Found index url https://www.piwheels.org/simple/
2023-09-10T15:39:51,931 Fetched page https://www.piwheels.org/simple/ampal/ as text/html
2023-09-10T15:39:51,945   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp39-cp39-linux_armv7l.whl#sha256=cf12ec38c08489ab3442a6bfb22e51ec2ce71637c16664f56a6bbc9b29d183b1 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,946   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp39-cp39-linux_armv6l.whl#sha256=cf12ec38c08489ab3442a6bfb22e51ec2ce71637c16664f56a6bbc9b29d183b1 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,946   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp35-cp35m-linux_armv6l.whl#sha256=bc4d3ad7d35fa4d09f2e20958dfb1a3f76fd710a23c6c78f6b8c3be0f2e88f7d (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,947   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp35-cp35m-linux_armv7l.whl#sha256=bc4d3ad7d35fa4d09f2e20958dfb1a3f76fd710a23c6c78f6b8c3be0f2e88f7d (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,947   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp34-cp34m-linux_armv7l.whl#sha256=99dc3c2af7219213a309e3f12d2d8c3f934b29c5315b239bb0af9961aa49c08a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,948   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp34-cp34m-linux_armv6l.whl#sha256=99dc3c2af7219213a309e3f12d2d8c3f934b29c5315b239bb0af9961aa49c08a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,949   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp37-cp37m-linux_armv6l.whl#sha256=c6a3ec7a4d78a7a62804cd65b6dad03ffa651dc3442bdb707c44724e9d7b3529 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,950   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.4.0-cp37-cp37m-linux_armv7l.whl#sha256=c6a3ec7a4d78a7a62804cd65b6dad03ffa651dc3442bdb707c44724e9d7b3529 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,950   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp39-cp39-linux_armv7l.whl#sha256=b73f51fd6feb1fa2d01e8ec866ffb942cfeefb981066f427ed80d707d41fd359 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,950   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp39-cp39-linux_armv6l.whl#sha256=b73f51fd6feb1fa2d01e8ec866ffb942cfeefb981066f427ed80d707d41fd359 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,951   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp34-cp34m-linux_armv7l.whl#sha256=e35e212576d5aafe8cd28110a8749e9c8330d18d904567fa567e7d17c0121091 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,951   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp34-cp34m-linux_armv6l.whl#sha256=e35e212576d5aafe8cd28110a8749e9c8330d18d904567fa567e7d17c0121091 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,952   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp35-cp35m-linux_armv6l.whl#sha256=84f1d2f265bee8d91a8182cab52a64bb290b631ded8787c87d2a5b4a6ceda98f (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,952   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp35-cp35m-linux_armv7l.whl#sha256=84f1d2f265bee8d91a8182cab52a64bb290b631ded8787c87d2a5b4a6ceda98f (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,953   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp37-cp37m-linux_armv6l.whl#sha256=79ae005751058c6d0ae8f07d7c27565b8b7047f7b8ed0958e64d9a4cdc7c01d5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,954   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.3.0-cp37-cp37m-linux_armv7l.whl#sha256=79ae005751058c6d0ae8f07d7c27565b8b7047f7b8ed0958e64d9a4cdc7c01d5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,954   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=d90582d5d32b21b4ed8ea8084798413b2b24635c607cadb2e785c6c8507d0ca0 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,955   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=d90582d5d32b21b4ed8ea8084798413b2b24635c607cadb2e785c6c8507d0ca0 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,955   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp35-cp35m-linux_armv6l.whl#sha256=40eb5738abc65a4ea4a541717a09aca225426c06cb36be6be329b3de73e2064a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,956   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp35-cp35m-linux_armv7l.whl#sha256=40eb5738abc65a4ea4a541717a09aca225426c06cb36be6be329b3de73e2064a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,956   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp34-cp34m-linux_armv6l.whl#sha256=88138240aa15f771fc6bac93b5091eb076c9a5b2c5b4844f08638fff1ae58fb5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,957   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp34-cp34m-linux_armv7l.whl#sha256=88138240aa15f771fc6bac93b5091eb076c9a5b2c5b4844f08638fff1ae58fb5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,958   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=fa99b21289c1d1395e7213be1f2da83442d04a06839ddb18055832b8fc0cd147 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,958   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=fa99b21289c1d1395e7213be1f2da83442d04a06839ddb18055832b8fc0cd147 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,959   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=9a3125cfc6ec5776f4355bbc88c7f68fb045975781821b8430f94db3fd5b6cc3 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,959   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=9a3125cfc6ec5776f4355bbc88c7f68fb045975781821b8430f94db3fd5b6cc3 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,959   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=51ff0c97bbafd1243a607efae14185a8cded80a107c03a701d6a74f1e8ffdbbc (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,960   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=51ff0c97bbafd1243a607efae14185a8cded80a107c03a701d6a74f1e8ffdbbc (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,960   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp34-cp34m-linux_armv6l.whl#sha256=9b3221fab29e565552ada7c673d9755c2f2471b50f29e9ef750c929b19fa5f89 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,961   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp34-cp34m-linux_armv7l.whl#sha256=9b3221fab29e565552ada7c673d9755c2f2471b50f29e9ef750c929b19fa5f89 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,962   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp35-cp35m-linux_armv7l.whl#sha256=a6ffdf5f12d194952f1aa9b3e71fae04a7d9bef57ac0e1af31093e76746ebf84 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,962   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp35-cp35m-linux_armv6l.whl#sha256=a6ffdf5f12d194952f1aa9b3e71fae04a7d9bef57ac0e1af31093e76746ebf84 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,963   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=f287657d9a53fd46bb0746640449b12c95fdede071751f9aed47e35abb3b6e4d (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,963   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=f287657d9a53fd46bb0746640449b12c95fdede071751f9aed47e35abb3b6e4d (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,964   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=d691092eb5181b42c73d036ded2f8a1f02b8674d5cb9af3213dd1ac48d4bb5bb (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,964   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=d691092eb5181b42c73d036ded2f8a1f02b8674d5cb9af3213dd1ac48d4bb5bb (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,965   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=aebdb752b6316e4fe49af818624adc8ca4e73cb4b8e6e496b6eb5413e453f395 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,966   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=aebdb752b6316e4fe49af818624adc8ca4e73cb4b8e6e496b6eb5413e453f395 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,966   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp34-cp34m-linux_armv7l.whl#sha256=bb10a9a83274eed0d19b7f7ae2146a7bdba87f572cee50533a338274ed94d544 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,967   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp34-cp34m-linux_armv6l.whl#sha256=bb10a9a83274eed0d19b7f7ae2146a7bdba87f572cee50533a338274ed94d544 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,967   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp35-cp35m-linux_armv7l.whl#sha256=290476b98c5232b8cfa7da3f3ab55cab1daeee460b5c683a6329c47862e59dd5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,968   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp35-cp35m-linux_armv6l.whl#sha256=290476b98c5232b8cfa7da3f3ab55cab1daeee460b5c683a6329c47862e59dd5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,968   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=b8befab0a05b7736d634a7f279404b076b347db1dd59a43d03b3cbe2a92b26f5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,969   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=b8befab0a05b7736d634a7f279404b076b347db1dd59a43d03b3cbe2a92b26f5 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,969   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=36203627d34049fa4bd5f68c5ea5982471d2696e71f6ebf3c2f40be512a0ca8f (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,970   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=36203627d34049fa4bd5f68c5ea5982471d2696e71f6ebf3c2f40be512a0ca8f (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,970   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=99efb16db183cae49bf3225252476b2a114aa8202951ad4beedb456705aaa423 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,971   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=99efb16db183cae49bf3225252476b2a114aa8202951ad4beedb456705aaa423 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,971   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=39d01a5d76e0da3ee7e6a69b17bbeefe277dfd5078f2ae7e649d278c488c4d8a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,972   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=39d01a5d76e0da3ee7e6a69b17bbeefe277dfd5078f2ae7e649d278c488c4d8a (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,972   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=d5f3cb2f32922d4dba6072abd7d8ff8bd5d6033c3b85e029c87038c636f2a668 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,974   Skipping link: No binaries permitted for ampal: https://www.piwheels.org/simple/ampal/AMPAL-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=d5f3cb2f32922d4dba6072abd7d8ff8bd5d6033c3b85e029c87038c636f2a668 (from https://www.piwheels.org/simple/ampal/)
2023-09-10T15:39:51,974 Skipping link: not a file: https://www.piwheels.org/simple/ampal/
2023-09-10T15:39:51,975 Skipping link: not a file: https://pypi.org/simple/ampal/
2023-09-10T15:39:51,994 Given no hashes to check 1 links for project 'ampal': discarding no candidates
2023-09-10T15:39:52,012 Collecting ampal==1.2.0
2023-09-10T15:39:52,014   Created temporary directory: /tmp/pip-unpack-v2um6lxy
2023-09-10T15:39:52,250   Downloading AMPAL-1.2.0.tar.gz (1.2 MB)
2023-09-10T15:39:52,739   Added ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-v5i7tkqx'
2023-09-10T15:39:52,741   Running setup.py (path:/tmp/pip-wheel-lcrd1yvw/ampal_822c862645a949808a175e29263b60fb/setup.py) egg_info for package ampal
2023-09-10T15:39:52,742   Created temporary directory: /tmp/pip-pip-egg-info-r8mbeilc
2023-09-10T15:39:52,742   Preparing metadata (setup.py): started
2023-09-10T15:39:52,743   Running command python setup.py egg_info
2023-09-10T15:39:54,943   /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-lcrd1yvw/ampal_822c862645a949808a175e29263b60fb/src/ampal/geometry.pyx
2023-09-10T15:39:54,943     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-10T15:39:57,779   Compiling src/ampal/geometry.pyx because it changed.
2023-09-10T15:39:57,780   [1/1] Cythonizing src/ampal/geometry.pyx
2023-09-10T15:39:58,210   running egg_info
2023-09-10T15:39:58,212   creating /tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info
2023-09-10T15:39:58,235   writing /tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/PKG-INFO
2023-09-10T15:39:58,239   writing dependency_links to /tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/dependency_links.txt
2023-09-10T15:39:58,240   writing requirements to /tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/requires.txt
2023-09-10T15:39:58,241   writing top-level names to /tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/top_level.txt
2023-09-10T15:39:58,243   writing manifest file '/tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/SOURCES.txt'
2023-09-10T15:39:58,342   reading manifest file '/tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/SOURCES.txt'
2023-09-10T15:39:58,343   reading manifest template 'MANIFEST.in'
2023-09-10T15:39:58,344   warning: no files found matching 'LICENSE.txt'
2023-09-10T15:39:58,362   writing manifest file '/tmp/pip-pip-egg-info-r8mbeilc/AMPAL.egg-info/SOURCES.txt'
2023-09-10T15:39:58,677   Preparing metadata (setup.py): finished with status 'done'
2023-09-10T15:39:58,681   Source in /tmp/pip-wheel-lcrd1yvw/ampal_822c862645a949808a175e29263b60fb has version 1.2.0, which satisfies requirement ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz
2023-09-10T15:39:58,682   Removed ampal==1.2.0 from https://files.pythonhosted.org/packages/f4/11/85ef80392ed433f9024abc0bacc2173dd88ce0e7c42f23b804cc3650b1e5/AMPAL-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-v5i7tkqx'
2023-09-10T15:39:58,686 Created temporary directory: /tmp/pip-unpack-oosfmw8m
2023-09-10T15:39:58,688 Created temporary directory: /tmp/pip-unpack-fensy1t5
2023-09-10T15:39:58,694 Building wheels for collected packages: ampal
2023-09-10T15:39:58,700   Created temporary directory: /tmp/pip-wheel-yga9qg89
2023-09-10T15:39:58,700   Building wheel for ampal (setup.py): started
2023-09-10T15:39:58,702   Destination directory: /tmp/pip-wheel-yga9qg89
2023-09-10T15:39:58,703   Running command python setup.py bdist_wheel
2023-09-10T15:40:00,191   running bdist_wheel
2023-09-10T15:40:00,287   running build
2023-09-10T15:40:00,288   running build_py
2023-09-10T15:40:00,314   creating build
2023-09-10T15:40:00,314   creating build/lib.linux-armv7l-cpython-311
2023-09-10T15:40:00,315   creating build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,316   copying src/ampal/align.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,319   copying src/ampal/data.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,320   copying src/ampal/__init__.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,322   copying src/ampal/pdb_parser.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,324   copying src/ampal/analyse_protein.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,326   copying src/ampal/protein.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,329   copying src/ampal/ampal_warnings.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,331   copying src/ampal/assembly.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,333   copying src/ampal/nucleic_acid.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,335   copying src/ampal/ligands.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,337   copying src/ampal/base_ampal.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,340   copying src/ampal/dssp.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,342   copying src/ampal/pseudo_atoms.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,344   copying src/ampal/interactions.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,346   copying src/ampal/amino_acids.py -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,348   running egg_info
2023-09-10T15:40:00,401   writing src/AMPAL.egg-info/PKG-INFO
2023-09-10T15:40:00,404   writing dependency_links to src/AMPAL.egg-info/dependency_links.txt
2023-09-10T15:40:00,406   writing requirements to src/AMPAL.egg-info/requires.txt
2023-09-10T15:40:00,407   writing top-level names to src/AMPAL.egg-info/top_level.txt
2023-09-10T15:40:00,433   reading manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2023-09-10T15:40:00,436   reading manifest template 'MANIFEST.in'
2023-09-10T15:40:00,437   warning: no files found matching 'LICENSE.txt'
2023-09-10T15:40:00,455   writing manifest file 'src/AMPAL.egg-info/SOURCES.txt'
2023-09-10T15:40:00,458   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'ampal.__pycache__' is absent from the `packages` configuration.
2023-09-10T15:40:00,458   !!

2023-09-10T15:40:00,460           ********************************************************************************
2023-09-10T15:40:00,460           ############################
2023-09-10T15:40:00,461           # Package would be ignored #
2023-09-10T15:40:00,461           ############################
2023-09-10T15:40:00,462           Python recognizes 'ampal.__pycache__' as an importable package[^1],
2023-09-10T15:40:00,462           but it is absent from setuptools' `packages` configuration.

2023-09-10T15:40:00,463           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-10T15:40:00,464           package, please make sure that 'ampal.__pycache__' is explicitly added
2023-09-10T15:40:00,464           to the `packages` configuration field.

2023-09-10T15:40:00,466           Alternatively, you can also rely on setuptools' discovery methods
2023-09-10T15:40:00,466           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-10T15:40:00,467           instead of `find_packages(...)`/`find:`).

2023-09-10T15:40:00,468           You can read more about "package discovery" on setuptools documentation page:

2023-09-10T15:40:00,469           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-10T15:40:00,470           If you don't want 'ampal.__pycache__' to be distributed and are
2023-09-10T15:40:00,471           already explicitly excluding 'ampal.__pycache__' via
2023-09-10T15:40:00,472           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-10T15:40:00,472           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-10T15:40:00,473           combination with a more fine grained `package-data` configuration.

2023-09-10T15:40:00,474           You can read more about "package data files" on setuptools documentation page:

2023-09-10T15:40:00,474           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-10T15:40:00,476           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-10T15:40:00,476                 even if it does not contain any `.py` files.
2023-09-10T15:40:00,477                 On the other hand, currently there is no concept of package data
2023-09-10T15:40:00,477                 directory, all directories are treated like packages.
2023-09-10T15:40:00,478           ********************************************************************************

2023-09-10T15:40:00,480   !!
2023-09-10T15:40:00,485     check.warn(importable)
2023-09-10T15:40:00,499   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'ampal.datafiles' is absent from the `packages` configuration.
2023-09-10T15:40:00,508   !!

2023-09-10T15:40:00,509           ********************************************************************************
2023-09-10T15:40:00,510           ############################
2023-09-10T15:40:00,510           # Package would be ignored #
2023-09-10T15:40:00,511           ############################
2023-09-10T15:40:00,511           Python recognizes 'ampal.datafiles' as an importable package[^1],
2023-09-10T15:40:00,512           but it is absent from setuptools' `packages` configuration.

2023-09-10T15:40:00,513           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-10T15:40:00,514           package, please make sure that 'ampal.datafiles' is explicitly added
2023-09-10T15:40:00,514           to the `packages` configuration field.

2023-09-10T15:40:00,516           Alternatively, you can also rely on setuptools' discovery methods
2023-09-10T15:40:00,516           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-10T15:40:00,517           instead of `find_packages(...)`/`find:`).

2023-09-10T15:40:00,518           You can read more about "package discovery" on setuptools documentation page:

2023-09-10T15:40:00,519           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-10T15:40:00,520           If you don't want 'ampal.datafiles' to be distributed and are
2023-09-10T15:40:00,521           already explicitly excluding 'ampal.datafiles' via
2023-09-10T15:40:00,521           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-10T15:40:00,522           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-10T15:40:00,522           combination with a more fine grained `package-data` configuration.

2023-09-10T15:40:00,529           You can read more about "package data files" on setuptools documentation page:

2023-09-10T15:40:00,532           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-10T15:40:00,539           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-10T15:40:00,547                 even if it does not contain any `.py` files.
2023-09-10T15:40:00,554                 On the other hand, currently there is no concept of package data
2023-09-10T15:40:00,556                 directory, all directories are treated like packages.
2023-09-10T15:40:00,557           ********************************************************************************

2023-09-10T15:40:00,558   !!
2023-09-10T15:40:00,559     check.warn(importable)
2023-09-10T15:40:00,560   copying src/ampal/.dssp.py.swp -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,561   copying src/ampal/geometry.c -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,561   copying src/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,562   copying src/ampal/geometry.pyx -> build/lib.linux-armv7l-cpython-311/ampal
2023-09-10T15:40:00,562   creating build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,562   copying src/ampal/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,565   copying src/ampal/__pycache__/align.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,567   copying src/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,570   copying src/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,572   copying src/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,574   copying src/ampal/__pycache__/assembly.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,577   copying src/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,580   copying src/ampal/__pycache__/data.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,582   copying src/ampal/__pycache__/dssp.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,584   copying src/ampal/__pycache__/interactions.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,586   copying src/ampal/__pycache__/ligands.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,589   copying src/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,591   copying src/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,594   copying src/ampal/__pycache__/protein.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,596   copying src/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/lib.linux-armv7l-cpython-311/ampal/__pycache__
2023-09-10T15:40:00,599   creating build/lib.linux-armv7l-cpython-311/ampal/datafiles
2023-09-10T15:40:00,600   copying src/ampal/datafiles/amino_acids.json -> build/lib.linux-armv7l-cpython-311/ampal/datafiles
2023-09-10T15:40:00,604   copying src/ampal/datafiles/chemical_elements.json -> build/lib.linux-armv7l-cpython-311/ampal/datafiles
2023-09-10T15:40:00,608   copying src/ampal/datafiles/pdb_atom_column_format.json -> build/lib.linux-armv7l-cpython-311/ampal/datafiles
2023-09-10T15:40:00,612   running build_ext
2023-09-10T15:40:00,619   building 'ampal.geometry' extension
2023-09-10T15:40:00,620   creating build/temp.linux-armv7l-cpython-311
2023-09-10T15:40:00,620   creating build/temp.linux-armv7l-cpython-311/src
2023-09-10T15:40:00,621   creating build/temp.linux-armv7l-cpython-311/src/ampal
2023-09-10T15:40:00,622   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c src/ampal/geometry.c -o build/temp.linux-armv7l-cpython-311/src/ampal/geometry.o
2023-09-10T15:40:06,681   src/ampal/geometry.c:7286:18: warning: ‘__pyx_f_5ampal_8geometry__unit_vector’ defined but not used [-Wunused-function]
2023-09-10T15:40:06,681    7286 | static PyObject *__pyx_f_5ampal_8geometry__unit_vector(double *__pyx_v_a) {
2023-09-10T15:40:06,682         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T15:40:06,688   src/ampal/geometry.c:6356:15: warning: ‘__pyx_f_5ampal_8geometry__dot_product_2d’ defined but not used [-Wunused-function]
2023-09-10T15:40:06,688    6356 | static double __pyx_f_5ampal_8geometry__dot_product_2d(double *__pyx_v_a, double *__pyx_v_b) {
2023-09-10T15:40:06,689         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T15:41:33,768   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/ampal/geometry.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/ampal/geometry.cpython-311-arm-linux-gnueabihf.so
2023-09-10T15:41:33,991   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-10T15:41:33,991   !!

2023-09-10T15:41:33,992           ********************************************************************************
2023-09-10T15:41:33,992           Please avoid running ``setup.py`` directly.
2023-09-10T15:41:33,993           Instead, use pypa/build, pypa/installer or other
2023-09-10T15:41:33,993           standards-based tools.

2023-09-10T15:41:33,994           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-10T15:41:33,995           ********************************************************************************

2023-09-10T15:41:33,995   !!
2023-09-10T15:41:33,996     self.initialize_options()
2023-09-10T15:41:34,015   installing to build/bdist.linux-armv7l/wheel
2023-09-10T15:41:34,016   running install
2023-09-10T15:41:34,040   running install_lib
2023-09-10T15:41:34,064   creating build/bdist.linux-armv7l
2023-09-10T15:41:34,065   creating build/bdist.linux-armv7l/wheel
2023-09-10T15:41:34,066   creating build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,067   copying build/lib.linux-armv7l-cpython-311/ampal/geometry.pyx -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,071   copying build/lib.linux-armv7l-cpython-311/ampal/align.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,073   copying build/lib.linux-armv7l-cpython-311/ampal/geometry.cpython-36m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,132   copying build/lib.linux-armv7l-cpython-311/ampal/data.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,133   copying build/lib.linux-armv7l-cpython-311/ampal/__init__.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,135   copying build/lib.linux-armv7l-cpython-311/ampal/geometry.c -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,166   copying build/lib.linux-armv7l-cpython-311/ampal/pdb_parser.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,169   copying build/lib.linux-armv7l-cpython-311/ampal/analyse_protein.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,172   copying build/lib.linux-armv7l-cpython-311/ampal/.dssp.py.swp -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,174   copying build/lib.linux-armv7l-cpython-311/ampal/protein.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,176   copying build/lib.linux-armv7l-cpython-311/ampal/ampal_warnings.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,178   copying build/lib.linux-armv7l-cpython-311/ampal/assembly.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,181   copying build/lib.linux-armv7l-cpython-311/ampal/geometry.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,220   copying build/lib.linux-armv7l-cpython-311/ampal/nucleic_acid.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,223   copying build/lib.linux-armv7l-cpython-311/ampal/ligands.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,224   copying build/lib.linux-armv7l-cpython-311/ampal/base_ampal.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,227   copying build/lib.linux-armv7l-cpython-311/ampal/dssp.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,229   creating build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,230   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/ligands.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,232   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/analyse_protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,235   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/interactions.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,237   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/__init__.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,238   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/ampal_warnings.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,240   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/data.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,242   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/amino_acids.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,244   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/pdb_parser.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,247   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/align.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,249   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/dssp.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,251   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/protein.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,254   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/pseudo_atoms.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,256   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/base_ampal.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,259   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/assembly.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,261   copying build/lib.linux-armv7l-cpython-311/ampal/__pycache__/nucleic_acid.cpython-36.pyc -> build/bdist.linux-armv7l/wheel/ampal/__pycache__
2023-09-10T15:41:34,263   copying build/lib.linux-armv7l-cpython-311/ampal/pseudo_atoms.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,265   copying build/lib.linux-armv7l-cpython-311/ampal/interactions.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,268   creating build/bdist.linux-armv7l/wheel/ampal/datafiles
2023-09-10T15:41:34,269   copying build/lib.linux-armv7l-cpython-311/ampal/datafiles/amino_acids.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2023-09-10T15:41:34,273   copying build/lib.linux-armv7l-cpython-311/ampal/datafiles/pdb_atom_column_format.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2023-09-10T15:41:34,276   copying build/lib.linux-armv7l-cpython-311/ampal/datafiles/chemical_elements.json -> build/bdist.linux-armv7l/wheel/ampal/datafiles
2023-09-10T15:41:34,279   copying build/lib.linux-armv7l-cpython-311/ampal/amino_acids.py -> build/bdist.linux-armv7l/wheel/ampal
2023-09-10T15:41:34,281   running install_egg_info
2023-09-10T15:41:34,310   Copying src/AMPAL.egg-info to build/bdist.linux-armv7l/wheel/AMPAL-1.2.0-py3.11.egg-info
2023-09-10T15:41:34,322   running install_scripts
2023-09-10T15:41:34,369   creating build/bdist.linux-armv7l/wheel/AMPAL-1.2.0.dist-info/WHEEL
2023-09-10T15:41:34,371   creating '/tmp/pip-wheel-yga9qg89/AMPAL-1.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-10T15:41:34,374   adding 'ampal/.dssp.py.swp'
2023-09-10T15:41:34,376   adding 'ampal/__init__.py'
2023-09-10T15:41:34,378   adding 'ampal/align.py'
2023-09-10T15:41:34,380   adding 'ampal/amino_acids.py'
2023-09-10T15:41:34,382   adding 'ampal/ampal_warnings.py'
2023-09-10T15:41:34,385   adding 'ampal/analyse_protein.py'
2023-09-10T15:41:34,387   adding 'ampal/assembly.py'
2023-09-10T15:41:34,391   adding 'ampal/base_ampal.py'
2023-09-10T15:41:34,392   adding 'ampal/data.py'
2023-09-10T15:41:34,393   adding 'ampal/dssp.py'
2023-09-10T15:41:34,522   adding 'ampal/geometry.c'
2023-09-10T15:41:35,019   adding 'ampal/geometry.cpython-311-arm-linux-gnueabihf.so'
2023-09-10T15:41:35,434   adding 'ampal/geometry.cpython-36m-x86_64-linux-gnu.so'
2023-09-10T15:41:35,463   adding 'ampal/geometry.pyx'
2023-09-10T15:41:35,465   adding 'ampal/interactions.py'
2023-09-10T15:41:35,467   adding 'ampal/ligands.py'
2023-09-10T15:41:35,468   adding 'ampal/nucleic_acid.py'
2023-09-10T15:41:35,471   adding 'ampal/pdb_parser.py'
2023-09-10T15:41:35,475   adding 'ampal/protein.py'
2023-09-10T15:41:35,477   adding 'ampal/pseudo_atoms.py'
2023-09-10T15:41:35,478   adding 'ampal/__pycache__/__init__.cpython-36.pyc'
2023-09-10T15:41:35,480   adding 'ampal/__pycache__/align.cpython-36.pyc'
2023-09-10T15:41:35,482   adding 'ampal/__pycache__/amino_acids.cpython-36.pyc'
2023-09-10T15:41:35,483   adding 'ampal/__pycache__/ampal_warnings.cpython-36.pyc'
2023-09-10T15:41:35,487   adding 'ampal/__pycache__/analyse_protein.cpython-36.pyc'
2023-09-10T15:41:35,490   adding 'ampal/__pycache__/assembly.cpython-36.pyc'
2023-09-10T15:41:35,493   adding 'ampal/__pycache__/base_ampal.cpython-36.pyc'
2023-09-10T15:41:35,495   adding 'ampal/__pycache__/data.cpython-36.pyc'
2023-09-10T15:41:35,496   adding 'ampal/__pycache__/dssp.cpython-36.pyc'
2023-09-10T15:41:35,498   adding 'ampal/__pycache__/interactions.cpython-36.pyc'
2023-09-10T15:41:35,500   adding 'ampal/__pycache__/ligands.cpython-36.pyc'
2023-09-10T15:41:35,501   adding 'ampal/__pycache__/nucleic_acid.cpython-36.pyc'
2023-09-10T15:41:35,504   adding 'ampal/__pycache__/pdb_parser.cpython-36.pyc'
2023-09-10T15:41:35,509   adding 'ampal/__pycache__/protein.cpython-36.pyc'
2023-09-10T15:41:35,511   adding 'ampal/__pycache__/pseudo_atoms.cpython-36.pyc'
2023-09-10T15:41:35,518   adding 'ampal/datafiles/amino_acids.json'
2023-09-10T15:41:35,523   adding 'ampal/datafiles/chemical_elements.json'
2023-09-10T15:41:35,540   adding 'ampal/datafiles/pdb_atom_column_format.json'
2023-09-10T15:41:35,542   adding 'AMPAL-1.2.0.dist-info/METADATA'
2023-09-10T15:41:35,543   adding 'AMPAL-1.2.0.dist-info/WHEEL'
2023-09-10T15:41:35,544   adding 'AMPAL-1.2.0.dist-info/top_level.txt'
2023-09-10T15:41:35,545   adding 'AMPAL-1.2.0.dist-info/RECORD'
2023-09-10T15:41:35,568   removing build/bdist.linux-armv7l/wheel
2023-09-10T15:41:35,722   Building wheel for ampal (setup.py): finished with status 'done'
2023-09-10T15:41:35,752   Created wheel for ampal: filename=AMPAL-1.2.0-cp311-cp311-linux_armv7l.whl size=2251160 sha256=349a30297165ba1a761d367ed1b95e00b84a5bd00b72d310754ef448a6c0f0f8
2023-09-10T15:41:35,753   Stored in directory: /tmp/pip-ephem-wheel-cache-ti9vc94o/wheels/21/78/c4/67ad8181a90edf7b0ff2bbe73e76afa78ce30fb2dd1d987fb2
2023-09-10T15:41:35,765 Successfully built ampal
2023-09-10T15:41:35,822 Removed build tracker: '/tmp/pip-build-tracker-v5i7tkqx'