2023-09-10T18:34:01,013 Created temporary directory: /tmp/pip-build-tracker-sv2m16xu
2023-09-10T18:34:01,014 Initialized build tracking at /tmp/pip-build-tracker-sv2m16xu
2023-09-10T18:34:01,015 Created build tracker: /tmp/pip-build-tracker-sv2m16xu
2023-09-10T18:34:01,015 Entered build tracker: /tmp/pip-build-tracker-sv2m16xu
2023-09-10T18:34:01,016 Created temporary directory: /tmp/pip-wheel-0q2bn0pz
2023-09-10T18:34:01,019 Created temporary directory: /tmp/pip-ephem-wheel-cache-va9uu88h
2023-09-10T18:34:01,040 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-10T18:34:01,044 2 location(s) to search for versions of whatshap:
2023-09-10T18:34:01,044 * https://pypi.org/simple/whatshap/
2023-09-10T18:34:01,044 * https://www.piwheels.org/simple/whatshap/
2023-09-10T18:34:01,045 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/
2023-09-10T18:34:01,045 Getting page https://pypi.org/simple/whatshap/
2023-09-10T18:34:01,047 Found index url https://pypi.org/simple/
2023-09-10T18:34:01,272 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json
2023-09-10T18:34:01,286   Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9
2023-09-10T18:34:01,376   Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10
2023-09-10T18:34:01,675   Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11
2023-09-10T18:34:01,847   Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12
2023-09-10T18:34:01,912   Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13
2023-09-10T18:34:01,933   Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14
2023-09-10T18:34:02,011   Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1
2023-09-10T18:34:02,051   Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15
2023-09-10T18:34:02,068   Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16
2023-09-10T18:34:02,128   Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.17
2023-09-10T18:34:02,172   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,188   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,218   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,265   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,279   Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18
2023-09-10T18:34:02,281   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,282   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,284   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,286   Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0
2023-09-10T18:34:02,288   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,289   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,290   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,291   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,293   Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1
2023-09-10T18:34:02,295   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,296   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,297   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,298   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,301   Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2
2023-09-10T18:34:02,302   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,303   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,304   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,305   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,307   Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1
2023-09-10T18:34:02,308   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,309   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,310   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,311   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-09-10T18:34:02,313   Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3
2023-09-10T18:34:02,315   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,316   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,317   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/16/12/069f3e690d0af16ee52c63dcad13bfb35b8fbd9b03f56ea8682a8ed47bf6/whatshap-1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,318   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/25/cf/3c12968b3e30141df2e518fe234bf38341db7474df5f890bd1c67664541f/whatshap-1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,319   Found link https://files.pythonhosted.org/packages/15/1e/1b29e356fc0b8a1fbbffe808c02a67eae8ebd922a78567aa5eb867b47070/whatshap-1.4.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.4
2023-09-10T18:34:02,320   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b6/5b/6e5b19bbab49bf45651cdf2eac3fe33a06d7959f65cfeba15dd08bae35e9/whatshap-1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,321   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/14/cf/91e8519226ffc8d3459582832b7d0cdf4fda7b4c324deecfadce3f55be55/whatshap-1.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,322   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/be/b4/0b3c2b6952cf006809cc1133e3c4c4b907458949bd5fa263114d26ea1670/whatshap-1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,324   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/d3/37e4980f972894b48ee1ec36c98e6c3a530b37eed7721bb9010626e920b6/whatshap-1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,325   Found link https://files.pythonhosted.org/packages/2a/0a/71c5db75b44c886e492294328b41f970bfcfdef1c409e8ed3981a0ff519e/whatshap-1.5.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.5
2023-09-10T18:34:02,326   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/f8/76/4a671a933194f2ccbf2fc70513516312fae6054fbdbe69b250919082fa4c/whatshap-1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,327   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,328   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,329   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,330   Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6
2023-09-10T18:34:02,331   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/0a/21389d1b959cd489c4a0abf1343e9bcff61d45af7de9470ffa350d2eeb4d/whatshap-1.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,333   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e0/a3/dff518edaec7aa8efd2c7f1df8a494b7c4a0b49f7e6350c13228dee97351/whatshap-1.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,334   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c1/34/785976fd423c187d90e2be419af906a366c038a57503e2e4fb6599aca868/whatshap-1.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,440   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e1/81/8eaf7be1255b732643ce82307a72b015230b14842a15fc83b17bd264282d/whatshap-1.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,441   Found link https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.7
2023-09-10T18:34:02,443   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e2/4e/b4bf39415abe9944df3062b4e9c1c8ce901cae6ba1b3780d0a3c23c3e146/whatshap-2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,444   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/28/4c/c2a9597d07eadbcf8427ec843cc784f572603292ee9bbb339fd79cea5075/whatshap-2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,445   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/fa/f1/45172b5e64640fa04cdc3af57fc9848cf5d94d163dee6646a9aae67dfccb/whatshap-2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,446   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/48/aa/31e1727bb7f7f770df8192d2aa096d988d0a4345e3842c89c32badedd7a9/whatshap-2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,447   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8e/5d/9af0551ffaa026d33b612a1bdfccdeabc4b93fd0af6313b57671aea0648a/whatshap-2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-09-10T18:34:02,449   Found link https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 2.0
2023-09-10T18:34:02,450 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/
2023-09-10T18:34:02,451 Getting page https://www.piwheels.org/simple/whatshap/
2023-09-10T18:34:02,454 Found index url https://www.piwheels.org/simple/
2023-09-10T18:34:02,759 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html
2023-09-10T18:34:02,772   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,773   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,774   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,775   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,775   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,776   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-09-10T18:34:02,776   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,777   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,777   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv6l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,778   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,779   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv7l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,779   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,780   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,781   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,782   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv6l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,782   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv7l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,784   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv7l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,785   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv6l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,786   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,786   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,787   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,788   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv6l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,788   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,789   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,790   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,791   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,792   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,793   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,793   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,794   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,795   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,796   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,796   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,797   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,797   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,798   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv7l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,798   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv7l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,799   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,799   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,800   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,801   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,801   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,802   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,803   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,803   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,804   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,805   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,806   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2023-09-10T18:34:02,807 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/
2023-09-10T18:34:02,807 Skipping link: not a file: https://pypi.org/simple/whatshap/
2023-09-10T18:34:02,828 Given no hashes to check 1 links for project 'whatshap': discarding no candidates
2023-09-10T18:34:02,846 Collecting whatshap==0.17
2023-09-10T18:34:02,848   Created temporary directory: /tmp/pip-unpack-9u_r8wr9
2023-09-10T18:34:03,268   Downloading whatshap-0.17.tar.gz (453 kB)
2023-09-10T18:34:04,347   Added whatshap==0.17 from https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz to build tracker '/tmp/pip-build-tracker-sv2m16xu'
2023-09-10T18:34:04,349   Running setup.py (path:/tmp/pip-wheel-0q2bn0pz/whatshap_82f5635542ff484c94e1d36bfa05996a/setup.py) egg_info for package whatshap
2023-09-10T18:34:04,350   Created temporary directory: /tmp/pip-pip-egg-info-psdoaf0z
2023-09-10T18:34:04,350   Preparing metadata (setup.py): started
2023-09-10T18:34:04,352   Running command python setup.py egg_info
2023-09-10T18:34:05,442   running egg_info
2023-09-10T18:34:05,443   creating /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info
2023-09-10T18:34:05,468   writing /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/PKG-INFO
2023-09-10T18:34:05,472   writing dependency_links to /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/dependency_links.txt
2023-09-10T18:34:05,473   writing entry points to /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/entry_points.txt
2023-09-10T18:34:05,475   writing requirements to /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/requires.txt
2023-09-10T18:34:05,476   writing top-level names to /tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/top_level.txt
2023-09-10T18:34:05,478   writing manifest file '/tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/SOURCES.txt'
2023-09-10T18:34:05,530   reading manifest file '/tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/SOURCES.txt'
2023-09-10T18:34:05,532   reading manifest template 'MANIFEST.in'
2023-09-10T18:34:05,534   warning: no files found matching 'whatshap/readselect.cpp'
2023-09-10T18:34:05,536   warning: no files found matching 'src/dptable.h'
2023-09-10T18:34:05,536   warning: no files found matching 'src/columncostcomputer.h'
2023-09-10T18:34:05,544   writing manifest file '/tmp/pip-pip-egg-info-psdoaf0z/whatshap.egg-info/SOURCES.txt'
2023-09-10T18:34:05,655   Preparing metadata (setup.py): finished with status 'done'
2023-09-10T18:34:05,658   Source in /tmp/pip-wheel-0q2bn0pz/whatshap_82f5635542ff484c94e1d36bfa05996a has version 0.17, which satisfies requirement whatshap==0.17 from https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz
2023-09-10T18:34:05,659   Removed whatshap==0.17 from https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz from build tracker '/tmp/pip-build-tracker-sv2m16xu'
2023-09-10T18:34:05,663 Created temporary directory: /tmp/pip-unpack-gil4spn8
2023-09-10T18:34:05,665 Created temporary directory: /tmp/pip-unpack-axird2v9
2023-09-10T18:34:05,682 Building wheels for collected packages: whatshap
2023-09-10T18:34:05,686   Created temporary directory: /tmp/pip-wheel-5fix70nl
2023-09-10T18:34:05,687   Building wheel for whatshap (setup.py): started
2023-09-10T18:34:05,688   Destination directory: /tmp/pip-wheel-5fix70nl
2023-09-10T18:34:05,688   Running command python setup.py bdist_wheel
2023-09-10T18:34:06,739   running bdist_wheel
2023-09-10T18:34:06,810   running build
2023-09-10T18:34:06,810   running build_py
2023-09-10T18:34:06,815   creating build
2023-09-10T18:34:06,816   creating build/lib.linux-armv7l-cpython-311
2023-09-10T18:34:06,816   creating build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,817   copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,819   copying whatshap/genotype.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,822   copying whatshap/math.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,824   copying whatshap/stats.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,826   copying whatshap/haplotag.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,828   copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,830   copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,832   copying whatshap/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,834   copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,836   copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,838   copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,839   copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,841   copying whatshap/compare.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,843   copying whatshap/args.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,845   copying whatshap/unphase.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,847   copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,849   copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,850   copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,852   copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,854   copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,855   copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,858   copying whatshap/phase.py -> build/lib.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,861   UPDATING build/lib.linux-armv7l-cpython-311/whatshap/_version.py
2023-09-10T18:34:06,863   set build/lib.linux-armv7l-cpython-311/whatshap/_version.py to '0.17'
2023-09-10T18:34:06,863   running build_ext
2023-09-10T18:34:06,869   building 'whatshap.core' extension
2023-09-10T18:34:06,870   creating build/temp.linux-armv7l-cpython-311
2023-09-10T18:34:06,871   creating build/temp.linux-armv7l-cpython-311/src
2023-09-10T18:34:06,872   creating build/temp.linux-armv7l-cpython-311/whatshap
2023-09-10T18:34:06,873   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-311/src/backwardcolumniterator.o -std=c++11
2023-09-10T18:34:08,705   In file included from /usr/include/c++/12/cassert:44,
2023-09-10T18:34:08,706                    from src/backwardcolumniterator.cpp:1:
2023-09-10T18:34:08,706   src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’:
2023-09-10T18:34:08,707   src/backwardcolumniterator.cpp:121:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:08,708     121 |         assert(k < positions->size());
2023-09-10T18:34:08,709         |                ~~^~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:08,709   src/backwardcolumniterator.cpp:140:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:08,710     140 |                                 assert(active_entry < read->getVariantCount());
2023-09-10T18:34:08,710         |                                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:10,476   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-311/src/columnindexingiterator.o -std=c++11
2023-09-10T18:34:11,736   src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’:
2023-09-10T18:34:11,737   src/columnindexingiterator.cpp:90:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:11,738      90 |         for(int j=0; j< parent->read_ids.size(); ++j) {
2023-09-10T18:34:11,739         |                      ~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:11,739   src/columnindexingiterator.cpp:92:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-10T18:34:11,740      92 |                 if(m != -1) {
2023-09-10T18:34:11,741         |                    ~~^~~~~
2023-09-10T18:34:11,741   src/columnindexingiterator.cpp:89:22: warning: unused variable ‘s’ [-Wunused-variable]
2023-09-10T18:34:11,742      89 |         unsigned int s = 1;
2023-09-10T18:34:11,743         |                      ^
2023-09-10T18:34:12,397   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-311/src/columnindexingscheme.o -std=c++11
2023-09-10T18:34:13,725   src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector<unsigned int>&)’:
2023-09-10T18:34:13,726   src/columnindexingscheme.cpp:22:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:13,727      22 |                 while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2023-09-10T18:34:13,728         |                         ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:13,729   src/columnindexingscheme.cpp:22:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:13,730      22 |                 while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2023-09-10T18:34:13,731         |                                                                 ~^~~~~~~~~~~~~~~~
2023-09-10T18:34:13,733   src/columnindexingscheme.cpp: In member function ‘void ColumnIndexingScheme::set_next_column(const ColumnIndexingScheme*)’:
2023-09-10T18:34:13,734   src/columnindexingscheme.cpp:71:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:13,735      71 |         while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2023-09-10T18:34:13,736         |                 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:13,737   src/columnindexingscheme.cpp:71:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-09-10T18:34:13,738      71 |         while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2023-09-10T18:34:13,739         |                                                     ~^~~~~~~~~~~~~~~~
2023-09-10T18:34:14,282   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/columniterator.cpp -o build/temp.linux-armv7l-cpython-311/src/columniterator.o -std=c++11
2023-09-10T18:34:16,094   In file included from /usr/include/c++/12/cassert:44,
2023-09-10T18:34:16,095                    from src/columniterator.cpp:1:
2023-09-10T18:34:16,095   src/columniterator.cpp: In member function ‘std::unique_ptr<std::vector<const Entry*> > ColumnIterator::get_next()’:
2023-09-10T18:34:16,096   src/columniterator.cpp:105:54: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:16,096     105 |                         assert(list_it->active_entry < read->getVariantCount());
2023-09-10T18:34:16,097         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:16,113   src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’:
2023-09-10T18:34:16,113   src/columniterator.cpp:161:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:16,114     161 |                                 assert(active_entry < read->getVariantCount());
2023-09-10T18:34:16,115         |                                        ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:17,955   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/entry.cpp -o build/temp.linux-armv7l-cpython-311/src/entry.o -std=c++11
2023-09-10T18:34:18,973   src/entry.cpp: In function ‘std::ostream& operator<<(std::ostream&, const Entry&)’:
2023-09-10T18:34:18,974   src/entry.cpp:59:47: warning: control reaches end of non-void function [-Wreturn-type]
2023-09-10T18:34:18,975      59 |         out << ',' << ((int)e.phred_score) << ')';
2023-09-10T18:34:18,976         |                                               ^~~
2023-09-10T18:34:19,112   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypecolumncostcomputer.o -std=c++11
2023-09-10T18:34:22,299   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypedistribution.o -std=c++11
2023-09-10T18:34:23,535   src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’:
2023-09-10T18:34:23,536   src/genotypedistribution.cpp:55:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:23,536      55 |                 if (i == best_index) continue;
2023-09-10T18:34:23,537         |                     ~~^~~~~~~~~~~~~
2023-09-10T18:34:24,015   In file included from /usr/include/c++/12/vector:70,
2023-09-10T18:34:24,019                    from src/genotypedistribution.h:4,
2023-09-10T18:34:24,020                    from src/genotypedistribution.cpp:5:
2023-09-10T18:34:24,021   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-10T18:34:24,021   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-10T18:34:24,022     439 |       vector<_Tp, _Alloc>::
2023-09-10T18:34:24,022         |       ^~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:24,056   In file included from /usr/include/c++/12/vector:64:
2023-09-10T18:34:24,058   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-10T18:34:24,059       inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:10:24:
2023-09-10T18:34:24,059   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-10T18:34:24,060    1287 |           _M_realloc_insert(end(), __x);
2023-09-10T18:34:24,061         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-10T18:34:24,061   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-10T18:34:24,062       inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:11:24:
2023-09-10T18:34:24,063   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-10T18:34:24,063    1287 |           _M_realloc_insert(end(), __x);
2023-09-10T18:34:24,064         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-10T18:34:24,065   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-09-10T18:34:24,066       inlined from ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’ at src/genotypedistribution.cpp:12:24:
2023-09-10T18:34:24,067   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-10T18:34:24,074    1287 |           _M_realloc_insert(end(), __x);
2023-09-10T18:34:24,075         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-10T18:34:24,277   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-311/src/genotypedptable.o -std=c++11
2023-09-10T18:34:26,803   In file included from src/genotypedptable.cpp:11:
2023-09-10T18:34:26,804   src/genotypedptable.h: In member function ‘void GenotypeDPTable::genotype_likelihood_t::divide_likelihoods_by(long double&)’:
2023-09-10T18:34:26,804   src/genotypedptable.h:38:95: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides<long double>; _Tp = long double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
2023-09-10T18:34:26,805      38 |       std::transform(likelihoods.begin(), likelihoods.end(), likelihoods.begin(), std::bind2nd(std::divides<long double>(), val));
2023-09-10T18:34:26,806         |                                                                                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:26,807   In file included from /usr/include/c++/12/bits/stl_function.h:1438,
2023-09-10T18:34:26,807                    from /usr/include/c++/12/string:48,
2023-09-10T18:34:26,808                    from /usr/include/c++/12/stdexcept:39,
2023-09-10T18:34:26,809                    from src/genotypedptable.cpp:1:
2023-09-10T18:34:26,810   /usr/include/c++/12/backward/binders.h:172:5: note: declared here
2023-09-10T18:34:26,810     172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
2023-09-10T18:34:26,811         |     ^~~~~~~
2023-09-10T18:34:26,830   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’:
2023-09-10T18:34:26,831   src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable]
2023-09-10T18:34:26,831      61 |     size_t column_count = input_column_iterator.get_column_count();
2023-09-10T18:34:26,832         |            ^~~~~~~~~~~~
2023-09-10T18:34:26,878   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’:
2023-09-10T18:34:26,879   src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable]
2023-09-10T18:34:26,879      91 |     unsigned int transmission_configurations = std::pow(4, pedigree->triple_count());
2023-09-10T18:34:26,880         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:26,883   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’:
2023-09-10T18:34:26,884   src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-10T18:34:26,884     152 |         if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) {
2023-09-10T18:34:26,885         |                       ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-09-10T18:34:26,888   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’:
2023-09-10T18:34:26,889   src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable]
2023-09-10T18:34:26,889     178 |     size_t k = (size_t)sqrt(input_column_iterator.get_column_count());
2023-09-10T18:34:26,890         |            ^
2023-09-10T18:34:27,058   In file included from src/genotypedptable.h:15:
2023-09-10T18:34:27,059   src/vector2d.h: In instantiation of ‘void Vector2D<T>::divide_entries_by(T) [with T = long double]’:
2023-09-10T18:34:27,059   src/genotypedptable.cpp:290:53:   required from here
2023-09-10T18:34:27,060   src/vector2d.h:40:28: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides<long double>; _Tp = long double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
2023-09-10T18:34:27,061      40 |                std::bind2nd(std::divides<T>(),val));
2023-09-10T18:34:27,062         |                ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:27,062   /usr/include/c++/12/backward/binders.h:172:5: note: declared here
2023-09-10T18:34:27,063     172 |     bind2nd(const _Operation& __fn, const _Tp& __x)
2023-09-10T18:34:27,064         |     ^~~~~~~
2023-09-10T18:34:30,824   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-311/src/genotyper.o -std=c++11
2023-09-10T18:34:36,341   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-311/src/graycodes.o -std=c++11
2023-09-10T18:34:37,753   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-311/src/indexset.o -std=c++11
2023-09-10T18:34:39,537   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigree.o -std=c++11
2023-09-10T18:34:41,041   In file included from /usr/include/c++/12/cassert:44,
2023-09-10T18:34:41,042                    from src/pedigree.cpp:4:
2023-09-10T18:34:41,043   src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector<unsigned int>, std::vector<PhredGenotypeLikelihoods*>)’:
2023-09-10T18:34:41,043   src/pedigree.cpp:30:33: warning: comparison of integer expressions of different signedness: ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:41,044      30 |         assert(genotypes.size() == variant_count);
2023-09-10T18:34:41,044         |                ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-09-10T18:34:41,045   src/pedigree.cpp:31:44: warning: comparison of integer expressions of different signedness: ‘std::vector<PhredGenotypeLikelihoods*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-10T18:34:41,046      31 |         assert(genotype_likelihoods.size() == variant_count);
2023-09-10T18:34:41,046         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-09-10T18:34:41,060   src/pedigree.cpp: In member function ‘unsigned int Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’:
2023-09-10T18:34:41,061   src/pedigree.cpp:68:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2023-09-10T18:34:41,061      68 |         assert(variant_index < variant_count);
2023-09-10T18:34:41,062         |                ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2023-09-10T18:34:41,063   src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’:
2023-09-10T18:34:41,064   src/pedigree.cpp:79:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2023-09-10T18:34:41,065      79 |         assert(variant_index < variant_count);
2023-09-10T18:34:41,066         |                ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2023-09-10T18:34:41,074   src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’:
2023-09-10T18:34:41,075   src/pedigree.cpp:110:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
2023-09-10T18:34:41,076     110 |                 for (size_t j=0; j<variant_count; ++j) {
2023-09-10T18:34:41,077         |                                  ~^~~~~~~~~~~~~~
2023-09-10T18:34:45,020   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/pedigreecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigreecolumncostcomputer.o -std=c++11
2023-09-10T18:34:46,996   src/pedigreecolumncostcomputer.cpp: In constructor ‘PedigreeColumnCostComputer::PedigreeColumnCostComputer(const std::vector<const Entry*>&, size_t, const std::vector<unsigned int>&, const Pedigree*, const PedigreePartitions&, bool)’:
2023-09-10T18:34:46,997   src/pedigreecolumncostcomputer.cpp:24:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-10T18:34:46,998      24 |         for (unsigned int i = 0; i < (1<<pedigree_partitions.count()); ++i) {
2023-09-10T18:34:46,998         |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:34:46,999   src/pedigreecolumncostcomputer.cpp:39:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-10T18:34:47,000      39 |                                 if (allele0 + allele1 != genotype) {
2023-09-10T18:34:47,001         |                                     ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-10T18:34:47,036   src/pedigreecolumncostcomputer.cpp: In member function ‘std::vector<PedigreeColumnCostComputer::phased_variant_t> PedigreeColumnCostComputer::get_alleles()’:
2023-09-10T18:34:47,037   src/pedigreecolumncostcomputer.cpp:118:22: warning: unused variable ‘second_best_cost’ [-Wunused-variable]
2023-09-10T18:34:47,038     118 |         unsigned int second_best_cost = numeric_limits < unsigned int >::max();
2023-09-10T18:34:47,038         |                      ^~~~~~~~~~~~~~~~
2023-09-10T18:34:48,150   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigreedptable.o -std=c++11
2023-09-10T18:34:55,157   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-311/src/pedigreepartitions.o -std=c++11
2023-09-10T18:34:57,136   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-311/src/phredgenotypelikelihoods.o -std=c++11
2023-09-10T18:34:58,500   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/read.cpp -o build/temp.linux-armv7l-cpython-311/src/read.o -std=c++11
2023-09-10T18:35:01,874   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/readset.cpp -o build/temp.linux-armv7l-cpython-311/src/readset.o -std=c++11
2023-09-10T18:35:07,691   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-311/src/transitionprobabilitycomputer.o -std=c++11
2023-09-10T18:35:10,489   In file included from /usr/include/c++/12/vector:70,
2023-09-10T18:35:10,490                    from src/vector2d.h:5,
2023-09-10T18:35:10,490                    from src/transitionprobabilitycomputer.h:5,
2023-09-10T18:35:10,491                    from src/transitionprobabilitycomputer.cpp:1:
2023-09-10T18:35:10,492   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator<long double>]’:
2023-09-10T18:35:10,492   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<long double, std::allocator<long double> >::iterator’ changed in GCC 7.1
2023-09-10T18:35:10,493     439 |       vector<_Tp, _Alloc>::
2023-09-10T18:35:10,494         |       ^~~~~~~~~~~~~~~~~~~
2023-09-10T18:35:11,074   In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator<long double>]’,
2023-09-10T18:35:11,075       inlined from ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector<PedigreePartitions*>&)’ at src/transitionprobabilitycomputer.cpp:25:29:
2023-09-10T18:35:11,075   /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double, std::allocator<long double> > >’ changed in GCC 7.1
2023-09-10T18:35:11,076     123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-09-10T18:35:11,077         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-10T18:35:13,108   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -I/usr/include/python3.11 -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-311/whatshap/core.o -std=c++11
2023-09-10T18:35:13,365   whatshap/core.cpp:233:12: fatal error: longintrepr.h: No such file or directory
2023-09-10T18:35:13,365     233 |   #include "longintrepr.h"
2023-09-10T18:35:13,366         |            ^~~~~~~~~~~~~~~
2023-09-10T18:35:13,366   compilation terminated.
2023-09-10T18:35:13,370   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2023-09-10T18:35:13,488   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-10T18:35:13,503   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-10T18:35:13,503   exec(compile('"'"''"'"''"'"'
2023-09-10T18:35:13,503   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-10T18:35:13,503   #
2023-09-10T18:35:13,503   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-10T18:35:13,503   #   import from `distutils.core` to work with newer packaging standards.
2023-09-10T18:35:13,503   # - It provides a clear error message when setuptools is not installed.
2023-09-10T18:35:13,503   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-10T18:35:13,503   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-10T18:35:13,503   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-10T18:35:13,503   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-10T18:35:13,503   import os, sys, tokenize
2023-09-10T18:35:13,503   
2023-09-10T18:35:13,503   try:
2023-09-10T18:35:13,503       import setuptools
2023-09-10T18:35:13,503   except ImportError as error:
2023-09-10T18:35:13,503       print(
2023-09-10T18:35:13,503           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-10T18:35:13,503           "the build environment.",
2023-09-10T18:35:13,503           file=sys.stderr,
2023-09-10T18:35:13,503       )
2023-09-10T18:35:13,503       sys.exit(1)
2023-09-10T18:35:13,503   
2023-09-10T18:35:13,503   __file__ = %r
2023-09-10T18:35:13,503   sys.argv[0] = __file__
2023-09-10T18:35:13,503   
2023-09-10T18:35:13,503   if os.path.exists(__file__):
2023-09-10T18:35:13,503       filename = __file__
2023-09-10T18:35:13,503       with tokenize.open(__file__) as f:
2023-09-10T18:35:13,503           setup_py_code = f.read()
2023-09-10T18:35:13,503   else:
2023-09-10T18:35:13,503       filename = "<auto-generated setuptools caller>"
2023-09-10T18:35:13,503       setup_py_code = "from setuptools import setup; setup()"
2023-09-10T18:35:13,503   
2023-09-10T18:35:13,503   exec(compile(setup_py_code, filename, "exec"))
2023-09-10T18:35:13,503   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-0q2bn0pz/whatshap_82f5635542ff484c94e1d36bfa05996a/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-5fix70nl[/]
2023-09-10T18:35:13,504   [bold magenta]cwd[/]: /tmp/pip-wheel-0q2bn0pz/whatshap_82f5635542ff484c94e1d36bfa05996a/
2023-09-10T18:35:13,504   Building wheel for whatshap (setup.py): finished with status 'error'
2023-09-10T18:35:13,506   ERROR: Failed building wheel for whatshap
2023-09-10T18:35:13,507   Running setup.py clean for whatshap
2023-09-10T18:35:13,508   Running command python setup.py clean
2023-09-10T18:35:14,698   running clean
2023-09-10T18:35:14,746   removing 'build/temp.linux-armv7l-cpython-311' (and everything under it)
2023-09-10T18:35:14,756   removing 'build/lib.linux-armv7l-cpython-311' (and everything under it)
2023-09-10T18:35:14,764   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-10T18:35:14,764   'build/scripts-3.11' does not exist -- can't clean it
2023-09-10T18:35:14,765   removing 'build'
2023-09-10T18:35:14,873 Failed to build whatshap
2023-09-10T18:35:14,874 ERROR: Failed to build one or more wheels
2023-09-10T18:35:14,875 Exception information:
2023-09-10T18:35:14,875 Traceback (most recent call last):
2023-09-10T18:35:14,875   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-10T18:35:14,875     status = run_func(*args)
2023-09-10T18:35:14,875              ^^^^^^^^^^^^^^^
2023-09-10T18:35:14,875   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-10T18:35:14,875     return func(self, options, args)
2023-09-10T18:35:14,875            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-10T18:35:14,875   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-10T18:35:14,875     raise CommandError("Failed to build one or more wheels")
2023-09-10T18:35:14,875 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-10T18:35:14,879 Removed build tracker: '/tmp/pip-build-tracker-sv2m16xu'