2023-09-10T20:23:34,037 Created temporary directory: /tmp/pip-build-tracker-hf1cvxhj 2023-09-10T20:23:34,038 Initialized build tracking at /tmp/pip-build-tracker-hf1cvxhj 2023-09-10T20:23:34,038 Created build tracker: /tmp/pip-build-tracker-hf1cvxhj 2023-09-10T20:23:34,039 Entered build tracker: /tmp/pip-build-tracker-hf1cvxhj 2023-09-10T20:23:34,040 Created temporary directory: /tmp/pip-wheel-wx88tr_j 2023-09-10T20:23:34,043 Created temporary directory: /tmp/pip-ephem-wheel-cache-aefbt8zz 2023-09-10T20:23:34,064 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T20:23:34,068 2 location(s) to search for versions of scikit-bio: 2023-09-10T20:23:34,068 * https://pypi.org/simple/scikit-bio/ 2023-09-10T20:23:34,068 * https://www.piwheels.org/simple/scikit-bio/ 2023-09-10T20:23:34,069 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2023-09-10T20:23:34,070 Getting page https://pypi.org/simple/scikit-bio/ 2023-09-10T20:23:34,071 Found index url https://pypi.org/simple/ 2023-09-10T20:23:34,289 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2023-09-10T20:23:34,293 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2023-09-10T20:23:34,294 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2023-09-10T20:23:34,295 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2023-09-10T20:23:34,295 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2023-09-10T20:23:34,296 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2023-09-10T20:23:34,297 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2023-09-10T20:23:34,298 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2023-09-10T20:23:34,298 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2023-09-10T20:23:34,299 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2023-09-10T20:23:34,300 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2023-09-10T20:23:34,300 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2023-09-10T20:23:34,301 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2023-09-10T20:23:34,302 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2023-09-10T20:23:34,303 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2023-09-10T20:23:34,304 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2023-09-10T20:23:34,305 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2023-09-10T20:23:34,306 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2023-09-10T20:23:34,306 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2023-09-10T20:23:34,307 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2023-09-10T20:23:34,308 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2023-09-10T20:23:34,308 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2023-09-10T20:23:34,309 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2023-09-10T20:23:34,310 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2023-09-10T20:23:34,310 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2023-09-10T20:23:34,311 Getting page https://www.piwheels.org/simple/scikit-bio/ 2023-09-10T20:23:34,313 Found index url https://www.piwheels.org/simple/ 2023-09-10T20:23:34,645 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2023-09-10T20:23:34,650 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,650 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,651 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,652 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,652 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,653 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,654 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,654 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,655 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,655 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,656 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,656 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,657 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,657 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-10T20:23:34,658 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2023-09-10T20:23:34,659 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2023-09-10T20:23:34,679 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2023-09-10T20:23:34,697 Collecting scikit-bio==0.5.4 2023-09-10T20:23:34,700 Created temporary directory: /tmp/pip-unpack-7j3733tg 2023-09-10T20:23:35,471 Downloading scikit-bio-0.5.4.tar.gz (8.3 MB) 2023-09-10T20:23:38,936 Added scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz to build tracker '/tmp/pip-build-tracker-hf1cvxhj' 2023-09-10T20:23:38,938 Running setup.py (path:/tmp/pip-wheel-wx88tr_j/scikit-bio_85f15ff80fe74677815ea0703a657cd3/setup.py) egg_info for package scikit-bio 2023-09-10T20:23:38,940 Created temporary directory: /tmp/pip-pip-egg-info-7250i7oq 2023-09-10T20:23:38,940 Preparing metadata (setup.py): started 2023-09-10T20:23:38,942 Running command python setup.py egg_info 2023-09-10T20:23:39,870 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-10T20:23:39,871 !! 2023-09-10T20:23:39,872 ******************************************************************************** 2023-09-10T20:23:39,873 Requirements should be satisfied by a PEP 517 installer. 2023-09-10T20:23:39,873 If you are using pip, you can try `pip install --use-pep517`. 2023-09-10T20:23:39,874 ******************************************************************************** 2023-09-10T20:23:39,875 !! 2023-09-10T20:23:39,876 dist.fetch_build_eggs(dist.setup_requires) 2023-09-10T20:23:42,306 running egg_info 2023-09-10T20:23:42,308 creating /tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info 2023-09-10T20:23:42,327 writing /tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/PKG-INFO 2023-09-10T20:23:42,329 writing dependency_links to /tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/dependency_links.txt 2023-09-10T20:23:42,331 writing requirements to /tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/requires.txt 2023-09-10T20:23:42,332 writing top-level names to /tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/top_level.txt 2023-09-10T20:23:42,333 writing manifest file '/tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/SOURCES.txt' 2023-09-10T20:23:42,488 reading manifest file '/tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/SOURCES.txt' 2023-09-10T20:23:42,490 reading manifest template 'MANIFEST.in' 2023-09-10T20:23:42,533 no previously-included directories found matching 'doc/build' 2023-09-10T20:23:42,535 no previously-included directories found matching 'doc/source/generated' 2023-09-10T20:23:42,538 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-10T20:23:42,542 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-10T20:23:42,545 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-09-10T20:23:42,548 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2023-09-10T20:23:42,549 adding license file 'COPYING.txt' 2023-09-10T20:23:42,581 writing manifest file '/tmp/pip-pip-egg-info-7250i7oq/scikit_bio.egg-info/SOURCES.txt' 2023-09-10T20:23:42,708 Preparing metadata (setup.py): finished with status 'done' 2023-09-10T20:23:42,712 Source in /tmp/pip-wheel-wx88tr_j/scikit-bio_85f15ff80fe74677815ea0703a657cd3 has version 0.5.4, which satisfies requirement scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz 2023-09-10T20:23:42,713 Removed scikit-bio==0.5.4 from https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz from build tracker '/tmp/pip-build-tracker-hf1cvxhj' 2023-09-10T20:23:42,718 Created temporary directory: /tmp/pip-unpack-iv31lyng 2023-09-10T20:23:42,719 Created temporary directory: /tmp/pip-unpack-4e12v4pl 2023-09-10T20:23:42,739 Building wheels for collected packages: scikit-bio 2023-09-10T20:23:42,743 Created temporary directory: /tmp/pip-wheel-v3u6_ihy 2023-09-10T20:23:42,743 Building wheel for scikit-bio (setup.py): started 2023-09-10T20:23:42,745 Destination directory: /tmp/pip-wheel-v3u6_ihy 2023-09-10T20:23:42,745 Running command python setup.py bdist_wheel 2023-09-10T20:23:43,617 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-10T20:23:43,617 !! 2023-09-10T20:23:43,618 ******************************************************************************** 2023-09-10T20:23:43,619 Requirements should be satisfied by a PEP 517 installer. 2023-09-10T20:23:43,619 If you are using pip, you can try `pip install --use-pep517`. 2023-09-10T20:23:43,620 ******************************************************************************** 2023-09-10T20:23:43,621 !! 2023-09-10T20:23:43,622 dist.fetch_build_eggs(dist.setup_requires) 2023-09-10T20:23:43,881 running bdist_wheel 2023-09-10T20:23:43,967 running build 2023-09-10T20:23:43,967 running build_py 2023-09-10T20:23:43,990 creating build 2023-09-10T20:23:43,991 creating build/lib.linux-armv7l-cpython-311 2023-09-10T20:23:43,992 creating build/lib.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:43,993 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:43,995 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:43,997 copying skbio/test.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:43,999 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:44,001 creating build/lib.linux-armv7l-cpython-311/benchmarks 2023-09-10T20:23:44,002 copying benchmarks/__init__.py -> build/lib.linux-armv7l-cpython-311/benchmarks 2023-09-10T20:23:44,003 copying benchmarks/benchmarks.py -> build/lib.linux-armv7l-cpython-311/benchmarks 2023-09-10T20:23:44,006 creating build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,006 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,009 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,010 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,013 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,015 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,017 copying skbio/stats/composition.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-10T20:23:44,021 creating build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-10T20:23:44,022 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-10T20:23:44,024 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-10T20:23:44,027 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-10T20:23:44,029 copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-10T20:23:44,031 creating build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,032 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,035 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,036 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,038 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,042 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-10T20:23:44,045 creating build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,046 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,048 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,051 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,052 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,054 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,056 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-10T20:23:44,059 creating build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,060 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,063 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,065 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,068 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,071 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-10T20:23:44,074 creating build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,075 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,077 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,079 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,081 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,083 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,085 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,087 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-10T20:23:44,090 creating build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,091 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,093 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,095 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,097 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,100 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,102 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,106 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,108 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,110 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,113 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-10T20:23:44,116 creating build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-10T20:23:44,117 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-10T20:23:44,119 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-10T20:23:44,121 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-10T20:23:44,123 creating build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,124 copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,127 copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,129 copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,131 copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,133 copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:44,136 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,137 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,139 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,142 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,144 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,146 copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,149 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,151 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-10T20:23:44,153 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2023-09-10T20:23:44,154 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2023-09-10T20:23:44,156 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2023-09-10T20:23:44,159 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,160 copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,162 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,164 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,166 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,168 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,171 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,173 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-10T20:23:44,175 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,176 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,179 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,181 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,183 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,186 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,187 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-10T20:23:44,191 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,192 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,194 copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,196 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,198 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,200 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,202 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,204 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-10T20:23:44,207 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2023-09-10T20:23:44,208 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2023-09-10T20:23:44,210 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2023-09-10T20:23:44,213 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,214 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,216 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,218 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,220 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,222 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,225 copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,227 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-10T20:23:44,230 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2023-09-10T20:23:44,231 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2023-09-10T20:23:44,233 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2023-09-10T20:23:44,235 copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2023-09-10T20:23:44,237 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2023-09-10T20:23:44,240 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,241 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,243 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,245 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,247 copying skbio/diversity/alpha/_faith_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,249 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,251 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,254 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-10T20:23:44,256 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-10T20:23:44,257 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-10T20:23:44,259 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-10T20:23:44,262 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,263 copying skbio/diversity/alpha/tests/test_faith_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,265 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,267 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,269 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,271 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,273 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,275 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-10T20:23:44,277 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-10T20:23:44,278 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-10T20:23:44,281 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-10T20:23:44,285 creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-10T20:23:44,286 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-10T20:23:44,287 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-10T20:23:44,290 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-10T20:23:44,293 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-10T20:23:44,295 creating build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-10T20:23:44,296 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-10T20:23:44,298 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-10T20:23:44,300 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-10T20:23:44,302 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-10T20:23:44,305 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/_lib 2023-09-10T20:23:44,306 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/_lib 2023-09-10T20:23:44,308 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-10T20:23:44,309 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-10T20:23:44,311 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-10T20:23:44,313 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-10T20:23:44,318 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-10T20:23:44,322 creating build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,323 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,326 copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,328 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,330 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,332 copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,335 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,337 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,339 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,342 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,344 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,346 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,348 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,351 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,353 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,356 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,358 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,361 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,363 copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,366 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2023-09-10T20:23:44,368 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-10T20:23:44,369 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-10T20:23:44,370 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-10T20:23:44,372 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-10T20:23:44,375 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-10T20:23:44,378 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,379 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,382 copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,384 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,386 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,388 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,389 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,391 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,394 copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,395 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,398 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,400 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,402 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,405 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,407 copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,410 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,412 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,415 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,418 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2023-09-10T20:23:44,420 creating build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,421 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,424 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,426 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,428 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,430 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,433 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,435 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,437 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,439 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-10T20:23:44,443 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2023-09-10T20:23:44,444 copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2023-09-10T20:23:44,445 copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2023-09-10T20:23:44,447 copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2023-09-10T20:23:44,450 copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2023-09-10T20:23:44,483 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,483 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,485 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,487 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,489 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,490 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,492 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,494 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,496 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,497 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,499 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,501 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,503 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-10T20:23:44,504 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,505 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,507 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,509 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,511 copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,513 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,516 copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,517 copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,519 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,521 copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,523 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,525 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,527 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,529 copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,531 copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,533 copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,535 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,536 copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,538 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,540 copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,542 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,544 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,546 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,547 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,549 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,551 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,553 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,554 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,556 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,558 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,560 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,562 copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,564 copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,566 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,568 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,570 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,572 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,574 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,575 copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,577 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,579 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-10T20:23:44,581 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,582 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,584 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,585 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,587 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,589 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,590 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,593 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,594 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,596 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,598 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,600 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,602 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,604 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,606 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,608 copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,611 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,613 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,615 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,617 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,619 copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,622 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,624 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,625 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,627 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-10T20:23:44,629 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data 2023-09-10T20:23:44,629 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2023-09-10T20:23:44,630 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2023-09-10T20:23:44,632 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2023-09-10T20:23:44,634 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2023-09-10T20:23:44,636 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2023-09-10T20:23:44,638 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data 2023-09-10T20:23:44,639 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,640 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,642 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,644 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,646 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,648 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,650 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2023-09-10T20:23:44,652 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,653 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,655 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,657 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,659 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,661 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,663 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,664 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,666 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-10T20:23:44,668 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,669 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,671 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,673 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,674 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,676 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,678 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,679 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,681 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,683 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,685 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,686 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,688 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,690 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,692 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,694 copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,696 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,698 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,699 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,701 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,703 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,705 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,707 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,709 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,711 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,713 copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,715 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,716 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,718 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,720 copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,722 copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,723 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,725 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,727 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,729 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,730 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,732 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,734 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,736 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,738 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,740 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,741 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,744 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,746 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,747 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,749 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,751 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,753 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,755 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,757 copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,759 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,761 copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,763 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,765 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,766 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,769 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,770 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,772 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,774 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,775 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,777 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,779 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,780 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,782 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,784 copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,786 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,787 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,789 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,791 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,793 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,795 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,797 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,799 copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,801 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,803 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,805 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,807 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,809 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,811 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,813 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,815 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,817 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,819 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,820 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,822 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,824 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,825 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,827 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,829 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,831 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,833 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,835 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,837 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,839 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,841 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,843 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,845 copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,847 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,850 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,852 copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,854 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,856 copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,858 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,860 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,862 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,864 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,866 copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,868 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,870 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,873 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,875 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,877 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,879 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,881 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,883 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,885 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,887 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,889 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,891 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,893 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,895 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,897 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,899 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,901 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,904 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,906 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,908 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,910 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,912 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,914 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,917 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,919 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,921 copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,923 copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,926 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,928 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,930 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,932 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,935 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,937 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,939 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,941 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,943 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,946 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,948 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,950 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,952 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,954 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,956 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,959 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,961 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,963 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,965 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,967 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,970 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,972 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,973 copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,976 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,978 copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,979 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,981 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,983 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,985 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,987 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,989 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,990 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,992 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,994 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,996 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:44,998 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,000 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,002 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,004 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,006 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,008 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,011 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,013 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,015 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,017 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,019 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,021 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,023 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,025 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,027 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,029 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,031 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,033 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,035 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,037 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,039 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,041 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,043 copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,045 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,047 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,049 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,051 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,053 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,055 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,057 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,059 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,061 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,063 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,065 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,067 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,069 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,071 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,073 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,075 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,076 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,078 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,080 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,082 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,084 copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,086 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,088 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,090 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,092 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,093 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,095 copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,097 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,099 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,101 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,102 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,104 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,106 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,108 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,110 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,112 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,114 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,116 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,117 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,119 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,121 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,123 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,125 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,127 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,129 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,131 copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,133 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,135 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,137 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,138 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,140 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,142 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,144 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,146 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,148 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,150 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,152 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,154 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,156 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,158 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,159 copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,161 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,163 copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,165 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,167 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,169 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,171 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,173 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,175 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,178 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,183 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,187 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,189 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,191 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,193 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,195 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,197 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,198 copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,200 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,202 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,204 copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,206 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,208 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,209 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,212 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,214 copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,216 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,218 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,220 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,221 copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,224 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,226 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,227 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,229 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,231 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,233 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,235 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,237 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,239 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,241 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,243 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,246 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,247 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,249 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,251 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,253 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,255 copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,257 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,259 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,260 copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,262 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,264 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,266 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,268 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,270 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,272 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,274 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,276 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,278 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,281 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,283 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,285 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,287 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,289 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,291 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,293 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,295 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,297 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,299 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,301 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,302 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,304 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,306 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,308 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,310 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,311 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,313 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,315 copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,317 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,319 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,321 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,323 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2023-09-10T20:23:45,340 running build_ext 2023-09-10T20:23:45,348 building 'skbio.metadata._intersection' extension 2023-09-10T20:23:45,348 creating build/temp.linux-armv7l-cpython-311 2023-09-10T20:23:45,349 creating build/temp.linux-armv7l-cpython-311/skbio 2023-09-10T20:23:45,349 creating build/temp.linux-armv7l-cpython-311/skbio/metadata 2023-09-10T20:23:45,350 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o 2023-09-10T20:23:45,745 skbio/metadata/_intersection.c:49:12: fatal error: longintrepr.h: No such file or directory 2023-09-10T20:23:45,746 49 | #include "longintrepr.h" 2023-09-10T20:23:45,746 | ^~~~~~~~~~~~~~~ 2023-09-10T20:23:45,747 compilation terminated. 2023-09-10T20:23:45,749 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-10T20:23:45,878 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-10T20:23:45,891 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-10T20:23:45,891 exec(compile('"'"''"'"''"'"' 2023-09-10T20:23:45,891 # This is -- a caller that pip uses to run setup.py 2023-09-10T20:23:45,891 # 2023-09-10T20:23:45,891 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-10T20:23:45,891 # import from `distutils.core` to work with newer packaging standards. 2023-09-10T20:23:45,891 # - It provides a clear error message when setuptools is not installed. 2023-09-10T20:23:45,891 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-10T20:23:45,891 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-10T20:23:45,891 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-10T20:23:45,891 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-10T20:23:45,891 import os, sys, tokenize 2023-09-10T20:23:45,891 2023-09-10T20:23:45,891 try: 2023-09-10T20:23:45,891 import setuptools 2023-09-10T20:23:45,891 except ImportError as error: 2023-09-10T20:23:45,891 print( 2023-09-10T20:23:45,891 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-10T20:23:45,891 "the build environment.", 2023-09-10T20:23:45,891 file=sys.stderr, 2023-09-10T20:23:45,891 ) 2023-09-10T20:23:45,891 sys.exit(1) 2023-09-10T20:23:45,891 2023-09-10T20:23:45,891 __file__ = %r 2023-09-10T20:23:45,891 sys.argv[0] = __file__ 2023-09-10T20:23:45,891 2023-09-10T20:23:45,891 if os.path.exists(__file__): 2023-09-10T20:23:45,891 filename = __file__ 2023-09-10T20:23:45,891 with tokenize.open(__file__) as f: 2023-09-10T20:23:45,891 setup_py_code = f.read() 2023-09-10T20:23:45,891 else: 2023-09-10T20:23:45,891 filename = "" 2023-09-10T20:23:45,891 setup_py_code = "from setuptools import setup; setup()" 2023-09-10T20:23:45,891 2023-09-10T20:23:45,891 exec(compile(setup_py_code, filename, "exec")) 2023-09-10T20:23:45,891 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-wx88tr_j/scikit-bio_85f15ff80fe74677815ea0703a657cd3/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-v3u6_ihy[/] 2023-09-10T20:23:45,892 [bold magenta]cwd[/]: /tmp/pip-wheel-wx88tr_j/scikit-bio_85f15ff80fe74677815ea0703a657cd3/ 2023-09-10T20:23:45,893 Building wheel for scikit-bio (setup.py): finished with status 'error' 2023-09-10T20:23:45,894 ERROR: Failed building wheel for scikit-bio 2023-09-10T20:23:45,895 Running setup.py clean for scikit-bio 2023-09-10T20:23:45,896 Running command python setup.py clean 2023-09-10T20:23:46,804 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-10T20:23:46,804 !! 2023-09-10T20:23:46,805 ******************************************************************************** 2023-09-10T20:23:46,806 Requirements should be satisfied by a PEP 517 installer. 2023-09-10T20:23:46,807 If you are using pip, you can try `pip install --use-pep517`. 2023-09-10T20:23:46,807 ******************************************************************************** 2023-09-10T20:23:46,808 !! 2023-09-10T20:23:46,809 dist.fetch_build_eggs(dist.setup_requires) 2023-09-10T20:23:47,050 running clean 2023-09-10T20:23:47,088 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-10T20:23:47,090 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-10T20:23:47,244 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-10T20:23:47,245 'build/scripts-3.11' does not exist -- can't clean it 2023-09-10T20:23:47,245 removing 'build' 2023-09-10T20:23:47,371 Failed to build scikit-bio 2023-09-10T20:23:47,372 ERROR: Failed to build one or more wheels 2023-09-10T20:23:47,374 Exception information: 2023-09-10T20:23:47,374 Traceback (most recent call last): 2023-09-10T20:23:47,374 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-10T20:23:47,374 status = run_func(*args) 2023-09-10T20:23:47,374 ^^^^^^^^^^^^^^^ 2023-09-10T20:23:47,374 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-10T20:23:47,374 return func(self, options, args) 2023-09-10T20:23:47,374 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T20:23:47,374 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-10T20:23:47,374 raise CommandError("Failed to build one or more wheels") 2023-09-10T20:23:47,374 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-10T20:23:47,377 Removed build tracker: '/tmp/pip-build-tracker-hf1cvxhj'