2023-09-10T23:38:25,703 Created temporary directory: /tmp/pip-build-tracker-zt3g28e2 2023-09-10T23:38:25,704 Initialized build tracking at /tmp/pip-build-tracker-zt3g28e2 2023-09-10T23:38:25,705 Created build tracker: /tmp/pip-build-tracker-zt3g28e2 2023-09-10T23:38:25,705 Entered build tracker: /tmp/pip-build-tracker-zt3g28e2 2023-09-10T23:38:25,706 Created temporary directory: /tmp/pip-wheel-r9ymqp6h 2023-09-10T23:38:25,709 Created temporary directory: /tmp/pip-ephem-wheel-cache-byhmg6ix 2023-09-10T23:38:25,731 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-10T23:38:25,735 2 location(s) to search for versions of ssw-aligner: 2023-09-10T23:38:25,735 * https://pypi.org/simple/ssw-aligner/ 2023-09-10T23:38:25,735 * https://www.piwheels.org/simple/ssw-aligner/ 2023-09-10T23:38:25,736 Fetching project page and analyzing links: https://pypi.org/simple/ssw-aligner/ 2023-09-10T23:38:25,737 Getting page https://pypi.org/simple/ssw-aligner/ 2023-09-10T23:38:25,738 Found index url https://pypi.org/simple/ 2023-09-10T23:38:25,874 Fetched page https://pypi.org/simple/ssw-aligner/ as application/vnd.pypi.simple.v1+json 2023-09-10T23:38:25,877 Found link https://files.pythonhosted.org/packages/26/c5/d6d45f897bcaabc6413b3eba32aceb83da292e4837d172fd478e679326ae/ssw_aligner-0.0.0.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.0 2023-09-10T23:38:25,878 Found link https://files.pythonhosted.org/packages/db/90/df5f1864262c4dfdca23700b93fd6f12e7525d050c2e3a059f756ce3cb5c/ssw_aligner-0.0.1.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.1 2023-09-10T23:38:25,879 Found link https://files.pythonhosted.org/packages/00/40/c2aee762db470efb345706da1fdafcba22fa9458f702f5867cbc2a2202f4/ssw_aligner-0.0.2.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.2 2023-09-10T23:38:25,879 Found link https://files.pythonhosted.org/packages/07/28/37a2fbf4b0bc91cc3d441524aec94dc8bb7a4f62fea679a6c25dbd3235c5/ssw_aligner-0.0.3.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.3 2023-09-10T23:38:25,880 Found link https://files.pythonhosted.org/packages/5c/c9/1b596cea0939fcde6549b0be70518b7bad3d23335006c5641438b3605813/ssw_aligner-0.0.4.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.4 2023-09-10T23:38:25,881 Found link https://files.pythonhosted.org/packages/96/3b/1fda982e7c2264d8164fd3cacd82a1a00de575a1eff68b3f86c578af2a7b/ssw_aligner-0.0.5.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.5 2023-09-10T23:38:25,882 Found link https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.6 2023-09-10T23:38:25,882 Found link https://files.pythonhosted.org/packages/09/33/a6ec7a29e0c5112a4626e82de22f1d3041a9848deeedb0eb10b29f955fd0/ssw_aligner-0.0.7.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.7 2023-09-10T23:38:25,883 Found link https://files.pythonhosted.org/packages/77/9a/73d8f071e78956c30e012c3fc5f9735a0e28426dad0cb6fd534e26cdd7db/ssw_aligner-0.0.8.tar.gz (from https://pypi.org/simple/ssw-aligner/), version: 0.0.8 2023-09-10T23:38:25,884 Fetching project page and analyzing links: https://www.piwheels.org/simple/ssw-aligner/ 2023-09-10T23:38:25,884 Getting page https://www.piwheels.org/simple/ssw-aligner/ 2023-09-10T23:38:25,886 Found index url https://www.piwheels.org/simple/ 2023-09-10T23:38:26,347 Fetched page https://www.piwheels.org/simple/ssw-aligner/ as text/html 2023-09-10T23:38:26,349 Skipping link: not a file: https://www.piwheels.org/simple/ssw-aligner/ 2023-09-10T23:38:26,350 Skipping link: not a file: https://pypi.org/simple/ssw-aligner/ 2023-09-10T23:38:26,383 Given no hashes to check 1 links for project 'ssw-aligner': discarding no candidates 2023-09-10T23:38:26,413 Collecting ssw-aligner==0.0.6 2023-09-10T23:38:26,417 Created temporary directory: /tmp/pip-unpack-ylbrugg1 2023-09-10T23:38:26,630 Downloading ssw_aligner-0.0.6.tar.gz (104 kB) 2023-09-10T23:38:26,740 Added ssw-aligner==0.0.6 from https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-zt3g28e2' 2023-09-10T23:38:26,742 Running setup.py (path:/tmp/pip-wheel-r9ymqp6h/ssw-aligner_771c7a68461a47e3b150c99db6edf831/setup.py) egg_info for package ssw-aligner 2023-09-10T23:38:26,743 Created temporary directory: /tmp/pip-pip-egg-info-o3pbpcf9 2023-09-10T23:38:26,744 Preparing metadata (setup.py): started 2023-09-10T23:38:26,745 Running command python setup.py egg_info 2023-09-10T23:38:27,256 Traceback (most recent call last): 2023-09-10T23:38:27,256 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-10T23:38:27,257 from . import multiarray 2023-09-10T23:38:27,257 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-10T23:38:27,258 from . import overrides 2023-09-10T23:38:27,258 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-10T23:38:27,259 from numpy.core._multiarray_umath import ( 2023-09-10T23:38:27,260 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-10T23:38:27,261 During handling of the above exception, another exception occurred: 2023-09-10T23:38:27,263 Traceback (most recent call last): 2023-09-10T23:38:27,264 File "", line 2, in 2023-09-10T23:38:27,264 File "", line 34, in 2023-09-10T23:38:27,265 File "/tmp/pip-wheel-r9ymqp6h/ssw-aligner_771c7a68461a47e3b150c99db6edf831/setup.py", line 4, in 2023-09-10T23:38:27,266 import numpy as np 2023-09-10T23:38:27,267 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-10T23:38:27,268 from . import core 2023-09-10T23:38:27,268 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-10T23:38:27,269 raise ImportError(msg) 2023-09-10T23:38:27,270 ImportError: 2023-09-10T23:38:27,272 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-10T23:38:27,274 Importing the numpy C-extensions failed. This error can happen for 2023-09-10T23:38:27,275 many reasons, often due to issues with your setup or how NumPy was 2023-09-10T23:38:27,276 installed. 2023-09-10T23:38:27,278 We have compiled some common reasons and troubleshooting tips at: 2023-09-10T23:38:27,280 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-10T23:38:27,282 Please note and check the following: 2023-09-10T23:38:27,284 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-10T23:38:27,285 * The NumPy version is: "1.25.2" 2023-09-10T23:38:27,287 and make sure that they are the versions you expect. 2023-09-10T23:38:27,288 Please carefully study the documentation linked above for further help. 2023-09-10T23:38:27,289 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-10T23:38:27,334 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-10T23:38:27,347 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-10T23:38:27,347 exec(compile('"'"''"'"''"'"' 2023-09-10T23:38:27,347 # This is -- a caller that pip uses to run setup.py 2023-09-10T23:38:27,347 # 2023-09-10T23:38:27,347 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-10T23:38:27,347 # import from `distutils.core` to work with newer packaging standards. 2023-09-10T23:38:27,347 # - It provides a clear error message when setuptools is not installed. 2023-09-10T23:38:27,347 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-10T23:38:27,347 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-10T23:38:27,347 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-10T23:38:27,347 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-10T23:38:27,347 import os, sys, tokenize 2023-09-10T23:38:27,347 2023-09-10T23:38:27,347 try: 2023-09-10T23:38:27,347 import setuptools 2023-09-10T23:38:27,347 except ImportError as error: 2023-09-10T23:38:27,347 print( 2023-09-10T23:38:27,347 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-10T23:38:27,347 "the build environment.", 2023-09-10T23:38:27,347 file=sys.stderr, 2023-09-10T23:38:27,347 ) 2023-09-10T23:38:27,347 sys.exit(1) 2023-09-10T23:38:27,347 2023-09-10T23:38:27,347 __file__ = %r 2023-09-10T23:38:27,347 sys.argv[0] = __file__ 2023-09-10T23:38:27,347 2023-09-10T23:38:27,347 if os.path.exists(__file__): 2023-09-10T23:38:27,347 filename = __file__ 2023-09-10T23:38:27,347 with tokenize.open(__file__) as f: 2023-09-10T23:38:27,347 setup_py_code = f.read() 2023-09-10T23:38:27,347 else: 2023-09-10T23:38:27,347 filename = "" 2023-09-10T23:38:27,347 setup_py_code = "from setuptools import setup; setup()" 2023-09-10T23:38:27,347 2023-09-10T23:38:27,347 exec(compile(setup_py_code, filename, "exec")) 2023-09-10T23:38:27,347 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-r9ymqp6h/ssw-aligner_771c7a68461a47e3b150c99db6edf831/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-o3pbpcf9[/] 2023-09-10T23:38:27,347 [bold magenta]cwd[/]: /tmp/pip-wheel-r9ymqp6h/ssw-aligner_771c7a68461a47e3b150c99db6edf831/ 2023-09-10T23:38:27,348 Preparing metadata (setup.py): finished with status 'error' 2023-09-10T23:38:27,350 ERROR: [present-rich] metadata generation failed 2023-09-10T23:38:27,355 Exception information: 2023-09-10T23:38:27,355 Traceback (most recent call last): 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-10T23:38:27,355 call_subprocess( 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-10T23:38:27,355 raise error 2023-09-10T23:38:27,355 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-10T23:38:27,355 2023-09-10T23:38:27,355 The above exception was the direct cause of the following exception: 2023-09-10T23:38:27,355 2023-09-10T23:38:27,355 Traceback (most recent call last): 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-10T23:38:27,355 status = run_func(*args) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-10T23:38:27,355 return func(self, options, args) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-10T23:38:27,355 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-10T23:38:27,355 result = self._result = resolver.resolve( 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-10T23:38:27,355 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-10T23:38:27,355 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-10T23:38:27,355 if not criterion.candidates: 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-10T23:38:27,355 return bool(self._sequence) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-10T23:38:27,355 return any(self) 2023-09-10T23:38:27,355 ^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-10T23:38:27,355 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-10T23:38:27,355 candidate = func() 2023-09-10T23:38:27,355 ^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-10T23:38:27,355 self._link_candidate_cache[link] = LinkCandidate( 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-10T23:38:27,355 super().__init__( 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-10T23:38:27,355 self.dist = self._prepare() 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-10T23:38:27,355 dist = self._prepare_distribution() 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-10T23:38:27,355 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-10T23:38:27,355 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-10T23:38:27,355 dist = _get_prepared_distribution( 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-10T23:38:27,355 abstract_dist.prepare_distribution_metadata( 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-10T23:38:27,355 self.req.prepare_metadata() 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-10T23:38:27,355 self.metadata_directory = generate_metadata_legacy( 2023-09-10T23:38:27,355 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-10T23:38:27,355 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-10T23:38:27,355 raise MetadataGenerationFailed(package_details=details) from error 2023-09-10T23:38:27,355 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-10T23:38:27,368 Removed ssw-aligner==0.0.6 from https://files.pythonhosted.org/packages/fe/60/131861d0d4250f27a65db140a09f8a208e5db084135ddbe7c7c580b45add/ssw_aligner-0.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-zt3g28e2' 2023-09-10T23:38:27,369 Removed build tracker: '/tmp/pip-build-tracker-zt3g28e2'