2023-09-11T00:17:50,679 Created temporary directory: /tmp/pip-build-tracker-xxfq2k6b
2023-09-11T00:17:50,680 Initialized build tracking at /tmp/pip-build-tracker-xxfq2k6b
2023-09-11T00:17:50,681 Created build tracker: /tmp/pip-build-tracker-xxfq2k6b
2023-09-11T00:17:50,681 Entered build tracker: /tmp/pip-build-tracker-xxfq2k6b
2023-09-11T00:17:50,682 Created temporary directory: /tmp/pip-wheel-l5c0x52p
2023-09-11T00:17:50,685 Created temporary directory: /tmp/pip-ephem-wheel-cache-g8yrqzpi
2023-09-11T00:17:50,707 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-11T00:17:50,710 2 location(s) to search for versions of hmm-kit:
2023-09-11T00:17:50,710 * https://pypi.org/simple/hmm-kit/
2023-09-11T00:17:50,710 * https://www.piwheels.org/simple/hmm-kit/
2023-09-11T00:17:50,711 Fetching project page and analyzing links: https://pypi.org/simple/hmm-kit/
2023-09-11T00:17:50,712 Getting page https://pypi.org/simple/hmm-kit/
2023-09-11T00:17:50,713 Found index url https://pypi.org/simple/
2023-09-11T00:17:50,855 Fetched page https://pypi.org/simple/hmm-kit/ as application/vnd.pypi.simple.v1+json
2023-09-11T00:17:50,858   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c7/9a/8c0ce2dbd213f7170b4c788050d2a41b1732bca1178586bc9720619231e6/hmm_kit-0.1-py2.7-linux-x86_64.egg (from https://pypi.org/simple/hmm-kit/)
2023-09-11T00:17:50,858   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/02/27/2cc4cbbdb9e565d604a8d55ede5497cc65c0a5f0275a59c214e8983626e1/hmm_kit-0.1-py3.6-linux-x86_64.egg (from https://pypi.org/simple/hmm-kit/)
2023-09-11T00:17:50,859   Found link https://files.pythonhosted.org/packages/2c/9d/be59085bdca5bee636c73e181f59f8028907610c42fc9df24f2f2e51f930/hmm_kit-0.1.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.1
2023-09-11T00:17:50,860   Found link https://files.pythonhosted.org/packages/ea/95/33cbefe7eb18093ff50a57904533fb1803cf6e67f3ead128a87d3ede14a4/hmm_kit-0.1.1.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.1.1
2023-09-11T00:17:50,860   Found link https://files.pythonhosted.org/packages/58/98/19298072ec14929245012098ca657aedff1210e6445cd630b9be46c6e59f/hmm_kit-0.2.0.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.2.0
2023-09-11T00:17:50,861   Found link https://files.pythonhosted.org/packages/0c/97/cb151084e460a53ae2e1f1a1e1735ee0aa22e88b555bdd2bd258e8466fef/hmm_kit-0.3.0.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.3.0
2023-09-11T00:17:50,862 Fetching project page and analyzing links: https://www.piwheels.org/simple/hmm-kit/
2023-09-11T00:17:50,863 Getting page https://www.piwheels.org/simple/hmm-kit/
2023-09-11T00:17:50,865 Found index url https://www.piwheels.org/simple/
2023-09-11T00:17:51,138 Fetched page https://www.piwheels.org/simple/hmm-kit/ as text/html
2023-09-11T00:17:51,139 Skipping link: not a file: https://www.piwheels.org/simple/hmm-kit/
2023-09-11T00:17:51,140 Skipping link: not a file: https://pypi.org/simple/hmm-kit/
2023-09-11T00:17:51,160 Given no hashes to check 1 links for project 'hmm-kit': discarding no candidates
2023-09-11T00:17:51,179 Collecting hmm-kit==0.2.0
2023-09-11T00:17:51,181   Created temporary directory: /tmp/pip-unpack-qahs5wog
2023-09-11T00:17:51,394   Downloading hmm_kit-0.2.0.tar.gz (85 kB)
2023-09-11T00:17:51,497   Added hmm-kit==0.2.0 from https://files.pythonhosted.org/packages/58/98/19298072ec14929245012098ca657aedff1210e6445cd630b9be46c6e59f/hmm_kit-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-xxfq2k6b'
2023-09-11T00:17:51,499   Running setup.py (path:/tmp/pip-wheel-l5c0x52p/hmm-kit_b2f513b39a05443888e612d4db62567d/setup.py) egg_info for package hmm-kit
2023-09-11T00:17:51,500   Created temporary directory: /tmp/pip-pip-egg-info-dendvkij
2023-09-11T00:17:51,500   Preparing metadata (setup.py): started
2023-09-11T00:17:51,502   Running command python setup.py egg_info
2023-09-11T00:17:52,538   Traceback (most recent call last):
2023-09-11T00:17:52,538     File "<string>", line 2, in <module>
2023-09-11T00:17:52,538     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-11T00:17:52,539     File "/tmp/pip-wheel-l5c0x52p/hmm-kit_b2f513b39a05443888e612d4db62567d/setup.py", line 12, in <module>
2023-09-11T00:17:52,540       ext_modules = cythonize(['hmm_kit/_hmmc.pyx'])
2023-09-11T00:17:52,540                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,541     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 990, in cythonize
2023-09-11T00:17:52,542       module_list, module_metadata = create_extension_list(
2023-09-11T00:17:52,542                                      ^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,543     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 825, in create_extension_list
2023-09-11T00:17:52,544       for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern):
2023-09-11T00:17:52,545     File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 119, in nonempty
2023-09-11T00:17:52,546       raise ValueError(error_msg)
2023-09-11T00:17:52,546   ValueError: 'hmm_kit/_hmmc.pyx' doesn't match any files
2023-09-11T00:17:52,652   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-11T00:17:52,665   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-11T00:17:52,665   exec(compile('"'"''"'"''"'"'
2023-09-11T00:17:52,665   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-11T00:17:52,665   #
2023-09-11T00:17:52,665   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-11T00:17:52,665   #   import from `distutils.core` to work with newer packaging standards.
2023-09-11T00:17:52,665   # - It provides a clear error message when setuptools is not installed.
2023-09-11T00:17:52,665   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-11T00:17:52,665   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-11T00:17:52,665   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-11T00:17:52,665   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-11T00:17:52,665   import os, sys, tokenize
2023-09-11T00:17:52,665   
2023-09-11T00:17:52,665   try:
2023-09-11T00:17:52,665       import setuptools
2023-09-11T00:17:52,665   except ImportError as error:
2023-09-11T00:17:52,665       print(
2023-09-11T00:17:52,665           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-11T00:17:52,665           "the build environment.",
2023-09-11T00:17:52,665           file=sys.stderr,
2023-09-11T00:17:52,665       )
2023-09-11T00:17:52,665       sys.exit(1)
2023-09-11T00:17:52,665   
2023-09-11T00:17:52,665   __file__ = %r
2023-09-11T00:17:52,665   sys.argv[0] = __file__
2023-09-11T00:17:52,665   
2023-09-11T00:17:52,665   if os.path.exists(__file__):
2023-09-11T00:17:52,665       filename = __file__
2023-09-11T00:17:52,665       with tokenize.open(__file__) as f:
2023-09-11T00:17:52,665           setup_py_code = f.read()
2023-09-11T00:17:52,665   else:
2023-09-11T00:17:52,665       filename = "<auto-generated setuptools caller>"
2023-09-11T00:17:52,665       setup_py_code = "from setuptools import setup; setup()"
2023-09-11T00:17:52,665   
2023-09-11T00:17:52,665   exec(compile(setup_py_code, filename, "exec"))
2023-09-11T00:17:52,665   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-l5c0x52p/hmm-kit_b2f513b39a05443888e612d4db62567d/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-dendvkij[/]
2023-09-11T00:17:52,665   [bold magenta]cwd[/]: /tmp/pip-wheel-l5c0x52p/hmm-kit_b2f513b39a05443888e612d4db62567d/
2023-09-11T00:17:52,666   Preparing metadata (setup.py): finished with status 'error'
2023-09-11T00:17:52,667 ERROR: [present-rich] metadata generation failed
2023-09-11T00:17:52,673 Exception information:
2023-09-11T00:17:52,673 Traceback (most recent call last):
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-11T00:17:52,673     call_subprocess(
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-11T00:17:52,673     raise error
2023-09-11T00:17:52,673 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-11T00:17:52,673 
2023-09-11T00:17:52,673 The above exception was the direct cause of the following exception:
2023-09-11T00:17:52,673 
2023-09-11T00:17:52,673 Traceback (most recent call last):
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-11T00:17:52,673     status = run_func(*args)
2023-09-11T00:17:52,673              ^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-11T00:17:52,673     return func(self, options, args)
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-11T00:17:52,673     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-11T00:17:52,673                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-11T00:17:52,673     result = self._result = resolver.resolve(
2023-09-11T00:17:52,673                             ^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-11T00:17:52,673     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-11T00:17:52,673             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-11T00:17:52,673     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-11T00:17:52,673     if not criterion.candidates:
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-11T00:17:52,673     return bool(self._sequence)
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-11T00:17:52,673     return any(self)
2023-09-11T00:17:52,673            ^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-11T00:17:52,673     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-11T00:17:52,673     candidate = func()
2023-09-11T00:17:52,673                 ^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-11T00:17:52,673     self._link_candidate_cache[link] = LinkCandidate(
2023-09-11T00:17:52,673                                        ^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-11T00:17:52,673     super().__init__(
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-11T00:17:52,673     self.dist = self._prepare()
2023-09-11T00:17:52,673                 ^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-11T00:17:52,673     dist = self._prepare_distribution()
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-11T00:17:52,673     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-11T00:17:52,673     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-11T00:17:52,673     dist = _get_prepared_distribution(
2023-09-11T00:17:52,673            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-11T00:17:52,673     abstract_dist.prepare_distribution_metadata(
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-11T00:17:52,673     self.req.prepare_metadata()
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-11T00:17:52,673     self.metadata_directory = generate_metadata_legacy(
2023-09-11T00:17:52,673                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T00:17:52,673   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-11T00:17:52,673     raise MetadataGenerationFailed(package_details=details) from error
2023-09-11T00:17:52,673 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-11T00:17:52,685 Removed hmm-kit==0.2.0 from https://files.pythonhosted.org/packages/58/98/19298072ec14929245012098ca657aedff1210e6445cd630b9be46c6e59f/hmm_kit-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-xxfq2k6b'
2023-09-11T00:17:52,686 Removed build tracker: '/tmp/pip-build-tracker-xxfq2k6b'