2023-09-11T01:49:24,936 Created temporary directory: /tmp/pip-build-tracker-o3t1lvsv 2023-09-11T01:49:24,937 Initialized build tracking at /tmp/pip-build-tracker-o3t1lvsv 2023-09-11T01:49:24,938 Created build tracker: /tmp/pip-build-tracker-o3t1lvsv 2023-09-11T01:49:24,938 Entered build tracker: /tmp/pip-build-tracker-o3t1lvsv 2023-09-11T01:49:24,939 Created temporary directory: /tmp/pip-wheel-4sxo0il2 2023-09-11T01:49:24,942 Created temporary directory: /tmp/pip-ephem-wheel-cache-wsr07i7y 2023-09-11T01:49:24,963 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T01:49:24,967 2 location(s) to search for versions of hmm-kit: 2023-09-11T01:49:24,967 * https://pypi.org/simple/hmm-kit/ 2023-09-11T01:49:24,967 * https://www.piwheels.org/simple/hmm-kit/ 2023-09-11T01:49:24,968 Fetching project page and analyzing links: https://pypi.org/simple/hmm-kit/ 2023-09-11T01:49:24,968 Getting page https://pypi.org/simple/hmm-kit/ 2023-09-11T01:49:24,970 Found index url https://pypi.org/simple/ 2023-09-11T01:49:25,108 Fetched page https://pypi.org/simple/hmm-kit/ as application/vnd.pypi.simple.v1+json 2023-09-11T01:49:25,110 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c7/9a/8c0ce2dbd213f7170b4c788050d2a41b1732bca1178586bc9720619231e6/hmm_kit-0.1-py2.7-linux-x86_64.egg (from https://pypi.org/simple/hmm-kit/) 2023-09-11T01:49:25,111 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/02/27/2cc4cbbdb9e565d604a8d55ede5497cc65c0a5f0275a59c214e8983626e1/hmm_kit-0.1-py3.6-linux-x86_64.egg (from https://pypi.org/simple/hmm-kit/) 2023-09-11T01:49:25,112 Found link https://files.pythonhosted.org/packages/2c/9d/be59085bdca5bee636c73e181f59f8028907610c42fc9df24f2f2e51f930/hmm_kit-0.1.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.1 2023-09-11T01:49:25,112 Found link https://files.pythonhosted.org/packages/ea/95/33cbefe7eb18093ff50a57904533fb1803cf6e67f3ead128a87d3ede14a4/hmm_kit-0.1.1.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.1.1 2023-09-11T01:49:25,113 Found link https://files.pythonhosted.org/packages/58/98/19298072ec14929245012098ca657aedff1210e6445cd630b9be46c6e59f/hmm_kit-0.2.0.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.2.0 2023-09-11T01:49:25,114 Found link https://files.pythonhosted.org/packages/0c/97/cb151084e460a53ae2e1f1a1e1735ee0aa22e88b555bdd2bd258e8466fef/hmm_kit-0.3.0.tar.gz (from https://pypi.org/simple/hmm-kit/), version: 0.3.0 2023-09-11T01:49:25,115 Fetching project page and analyzing links: https://www.piwheels.org/simple/hmm-kit/ 2023-09-11T01:49:25,116 Getting page https://www.piwheels.org/simple/hmm-kit/ 2023-09-11T01:49:25,117 Found index url https://www.piwheels.org/simple/ 2023-09-11T01:49:25,368 Fetched page https://www.piwheels.org/simple/hmm-kit/ as text/html 2023-09-11T01:49:25,369 Skipping link: not a file: https://www.piwheels.org/simple/hmm-kit/ 2023-09-11T01:49:25,370 Skipping link: not a file: https://pypi.org/simple/hmm-kit/ 2023-09-11T01:49:25,389 Given no hashes to check 1 links for project 'hmm-kit': discarding no candidates 2023-09-11T01:49:25,407 Collecting hmm-kit==0.3.0 2023-09-11T01:49:25,409 Created temporary directory: /tmp/pip-unpack-dxyg3wiz 2023-09-11T01:49:25,621 Downloading hmm_kit-0.3.0.tar.gz (85 kB) 2023-09-11T01:49:25,722 Added hmm-kit==0.3.0 from https://files.pythonhosted.org/packages/0c/97/cb151084e460a53ae2e1f1a1e1735ee0aa22e88b555bdd2bd258e8466fef/hmm_kit-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-o3t1lvsv' 2023-09-11T01:49:25,723 Running setup.py (path:/tmp/pip-wheel-4sxo0il2/hmm-kit_ed2c0fba8f054395992a66c625c78629/setup.py) egg_info for package hmm-kit 2023-09-11T01:49:25,724 Created temporary directory: /tmp/pip-pip-egg-info-vnhr803u 2023-09-11T01:49:25,725 Preparing metadata (setup.py): started 2023-09-11T01:49:25,726 Running command python setup.py egg_info 2023-09-11T01:49:26,806 Traceback (most recent call last): 2023-09-11T01:49:26,806 File "", line 2, in 2023-09-11T01:49:26,807 File "", line 34, in 2023-09-11T01:49:26,807 File "/tmp/pip-wheel-4sxo0il2/hmm-kit_ed2c0fba8f054395992a66c625c78629/setup.py", line 12, in 2023-09-11T01:49:26,808 ext_modules = cythonize(['hmm_kit/_hmmc.pyx']) 2023-09-11T01:49:26,808 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,809 File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 990, in cythonize 2023-09-11T01:49:26,809 module_list, module_metadata = create_extension_list( 2023-09-11T01:49:26,810 ^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,811 File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 825, in create_extension_list 2023-09-11T01:49:26,812 for file in nonempty(sorted(extended_iglob(filepattern)), "'%s' doesn't match any files" % filepattern): 2023-09-11T01:49:26,813 File "/usr/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 119, in nonempty 2023-09-11T01:49:26,813 raise ValueError(error_msg) 2023-09-11T01:49:26,814 ValueError: 'hmm_kit/_hmmc.pyx' doesn't match any files 2023-09-11T01:49:26,920 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-11T01:49:26,933 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-11T01:49:26,933 exec(compile('"'"''"'"''"'"' 2023-09-11T01:49:26,933 # This is -- a caller that pip uses to run setup.py 2023-09-11T01:49:26,933 # 2023-09-11T01:49:26,933 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-11T01:49:26,933 # import from `distutils.core` to work with newer packaging standards. 2023-09-11T01:49:26,933 # - It provides a clear error message when setuptools is not installed. 2023-09-11T01:49:26,933 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-11T01:49:26,933 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-11T01:49:26,933 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-11T01:49:26,933 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-11T01:49:26,933 import os, sys, tokenize 2023-09-11T01:49:26,933 2023-09-11T01:49:26,933 try: 2023-09-11T01:49:26,933 import setuptools 2023-09-11T01:49:26,933 except ImportError as error: 2023-09-11T01:49:26,933 print( 2023-09-11T01:49:26,933 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-11T01:49:26,933 "the build environment.", 2023-09-11T01:49:26,933 file=sys.stderr, 2023-09-11T01:49:26,933 ) 2023-09-11T01:49:26,933 sys.exit(1) 2023-09-11T01:49:26,933 2023-09-11T01:49:26,933 __file__ = %r 2023-09-11T01:49:26,933 sys.argv[0] = __file__ 2023-09-11T01:49:26,933 2023-09-11T01:49:26,933 if os.path.exists(__file__): 2023-09-11T01:49:26,933 filename = __file__ 2023-09-11T01:49:26,933 with tokenize.open(__file__) as f: 2023-09-11T01:49:26,933 setup_py_code = f.read() 2023-09-11T01:49:26,933 else: 2023-09-11T01:49:26,933 filename = "" 2023-09-11T01:49:26,933 setup_py_code = "from setuptools import setup; setup()" 2023-09-11T01:49:26,933 2023-09-11T01:49:26,933 exec(compile(setup_py_code, filename, "exec")) 2023-09-11T01:49:26,933 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-4sxo0il2/hmm-kit_ed2c0fba8f054395992a66c625c78629/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-vnhr803u[/] 2023-09-11T01:49:26,934 [bold magenta]cwd[/]: /tmp/pip-wheel-4sxo0il2/hmm-kit_ed2c0fba8f054395992a66c625c78629/ 2023-09-11T01:49:26,934 Preparing metadata (setup.py): finished with status 'error' 2023-09-11T01:49:26,936 ERROR: [present-rich] metadata generation failed 2023-09-11T01:49:26,941 Exception information: 2023-09-11T01:49:26,941 Traceback (most recent call last): 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-11T01:49:26,941 call_subprocess( 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-11T01:49:26,941 raise error 2023-09-11T01:49:26,941 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-11T01:49:26,941 2023-09-11T01:49:26,941 The above exception was the direct cause of the following exception: 2023-09-11T01:49:26,941 2023-09-11T01:49:26,941 Traceback (most recent call last): 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-11T01:49:26,941 status = run_func(*args) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-11T01:49:26,941 return func(self, options, args) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-11T01:49:26,941 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-11T01:49:26,941 result = self._result = resolver.resolve( 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-11T01:49:26,941 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-11T01:49:26,941 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-11T01:49:26,941 if not criterion.candidates: 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-11T01:49:26,941 return bool(self._sequence) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-11T01:49:26,941 return any(self) 2023-09-11T01:49:26,941 ^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-11T01:49:26,941 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-11T01:49:26,941 candidate = func() 2023-09-11T01:49:26,941 ^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-11T01:49:26,941 self._link_candidate_cache[link] = LinkCandidate( 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-11T01:49:26,941 super().__init__( 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-11T01:49:26,941 self.dist = self._prepare() 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-11T01:49:26,941 dist = self._prepare_distribution() 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-11T01:49:26,941 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-11T01:49:26,941 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-11T01:49:26,941 dist = _get_prepared_distribution( 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-11T01:49:26,941 abstract_dist.prepare_distribution_metadata( 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-11T01:49:26,941 self.req.prepare_metadata() 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-11T01:49:26,941 self.metadata_directory = generate_metadata_legacy( 2023-09-11T01:49:26,941 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T01:49:26,941 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-11T01:49:26,941 raise MetadataGenerationFailed(package_details=details) from error 2023-09-11T01:49:26,941 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-11T01:49:26,954 Removed hmm-kit==0.3.0 from https://files.pythonhosted.org/packages/0c/97/cb151084e460a53ae2e1f1a1e1735ee0aa22e88b555bdd2bd258e8466fef/hmm_kit-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-o3t1lvsv' 2023-09-11T01:49:26,955 Removed build tracker: '/tmp/pip-build-tracker-o3t1lvsv'