2023-09-11T02:01:30,263 Created temporary directory: /tmp/pip-build-tracker-jg9r84jg 2023-09-11T02:01:30,264 Initialized build tracking at /tmp/pip-build-tracker-jg9r84jg 2023-09-11T02:01:30,265 Created build tracker: /tmp/pip-build-tracker-jg9r84jg 2023-09-11T02:01:30,265 Entered build tracker: /tmp/pip-build-tracker-jg9r84jg 2023-09-11T02:01:30,266 Created temporary directory: /tmp/pip-wheel-k6au8bgf 2023-09-11T02:01:30,269 Created temporary directory: /tmp/pip-ephem-wheel-cache-1hf_9uki 2023-09-11T02:01:30,290 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T02:01:30,294 2 location(s) to search for versions of deeptoolsintervals: 2023-09-11T02:01:30,294 * https://pypi.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,294 * https://www.piwheels.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,295 Fetching project page and analyzing links: https://pypi.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,295 Getting page https://pypi.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,297 Found index url https://pypi.org/simple/ 2023-09-11T02:01:30,512 Fetched page https://pypi.org/simple/deeptoolsintervals/ as application/vnd.pypi.simple.v1+json 2023-09-11T02:01:30,514 Found link https://files.pythonhosted.org/packages/da/1a/af0e167859b4302a666729c25cbcab02cc147c29a11e0b8768ce324960ff/deeptoolsintervals-0.1.7.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.7 2023-09-11T02:01:30,514 Found link https://files.pythonhosted.org/packages/5e/a6/fa0ec5fb29f0ab041ce69e6e837e04a831022bb5b1e2e8b524491d53b8a3/deeptoolsintervals-0.1.8.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.8 2023-09-11T02:01:30,515 Found link https://files.pythonhosted.org/packages/ac/1f/d10d6ad23c86c62d90d867d0506881a392ec6ef06885b858eaab868dd356/deeptoolsintervals-0.1.9.tar.gz (from https://pypi.org/simple/deeptoolsintervals/), version: 0.1.9 2023-09-11T02:01:30,516 Fetching project page and analyzing links: https://www.piwheels.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,517 Getting page https://www.piwheels.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,518 Found index url https://www.piwheels.org/simple/ 2023-09-11T02:01:30,788 Fetched page https://www.piwheels.org/simple/deeptoolsintervals/ as text/html 2023-09-11T02:01:30,796 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp34-cp34m-linux_armv6l.whl#sha256=a98b482405bd8bd98b21ad30fe6cc5dc228cc630483cffd0fca10115b22e0dda (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,796 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp34-cp34m-linux_armv7l.whl#sha256=a98b482405bd8bd98b21ad30fe6cc5dc228cc630483cffd0fca10115b22e0dda (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,797 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp35-cp35m-linux_armv6l.whl#sha256=bce1bce1e3a3df7623d0f569053b98ac221c03fadeedc82985dce369b306025c (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,798 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp35-cp35m-linux_armv7l.whl#sha256=bce1bce1e3a3df7623d0f569053b98ac221c03fadeedc82985dce369b306025c (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,798 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp37-cp37m-linux_armv6l.whl#sha256=464d7cae1869359903217d944b97a89851f2e60b32febc1ad38315c9cd36aecb (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,799 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp37-cp37m-linux_armv7l.whl#sha256=464d7cae1869359903217d944b97a89851f2e60b32febc1ad38315c9cd36aecb (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,799 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp39-cp39-linux_armv6l.whl#sha256=eb0bac224f6b668a0df7e6e9b0b6134c995314abbcc98512494c9c1cb7ad5b41 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,800 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.7-cp39-cp39-linux_armv7l.whl#sha256=eb0bac224f6b668a0df7e6e9b0b6134c995314abbcc98512494c9c1cb7ad5b41 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,801 Skipping link: No binaries permitted for deeptoolsintervals: 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https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp37-cp37m-linux_armv6l.whl#sha256=11923297523d08eb35fdb7f7759be6811ff716b3b3ea5d33740187c4cf0165b1 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,808 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp37-cp37m-linux_armv7l.whl#sha256=11923297523d08eb35fdb7f7759be6811ff716b3b3ea5d33740187c4cf0165b1 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,808 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp39-cp39-linux_armv6l.whl#sha256=2f13db26292dccd89ee311342a772297b96151bda8a0a5ead0808ce09a9c8923 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,809 Skipping link: No binaries permitted for deeptoolsintervals: https://www.piwheels.org/simple/deeptoolsintervals/deeptoolsintervals-0.1.9-cp39-cp39-linux_armv7l.whl#sha256=2f13db26292dccd89ee311342a772297b96151bda8a0a5ead0808ce09a9c8923 (from https://www.piwheels.org/simple/deeptoolsintervals/) 2023-09-11T02:01:30,809 Skipping link: not a file: https://www.piwheels.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,810 Skipping link: not a file: https://pypi.org/simple/deeptoolsintervals/ 2023-09-11T02:01:30,829 Given no hashes to check 1 links for project 'deeptoolsintervals': discarding no candidates 2023-09-11T02:01:30,847 Collecting deeptoolsintervals==0.1.7 2023-09-11T02:01:30,849 Created temporary directory: /tmp/pip-unpack-gqe8y8c7 2023-09-11T02:01:31,073 Downloading deeptoolsintervals-0.1.7.tar.gz (40 kB) 2023-09-11T02:01:31,161 Added deeptoolsintervals==0.1.7 from https://files.pythonhosted.org/packages/da/1a/af0e167859b4302a666729c25cbcab02cc147c29a11e0b8768ce324960ff/deeptoolsintervals-0.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-jg9r84jg' 2023-09-11T02:01:31,163 Running setup.py (path:/tmp/pip-wheel-k6au8bgf/deeptoolsintervals_2cc5640851684c27b69da90be223938d/setup.py) egg_info for package deeptoolsintervals 2023-09-11T02:01:31,164 Created temporary directory: /tmp/pip-pip-egg-info-1b8_0e0x 2023-09-11T02:01:31,164 Preparing metadata (setup.py): started 2023-09-11T02:01:31,166 Running command python setup.py egg_info 2023-09-11T02:01:31,638 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' 2023-09-11T02:01:31,638 warnings.warn(msg) 2023-09-11T02:01:32,168 running egg_info 2023-09-11T02:01:32,170 creating /tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info 2023-09-11T02:01:32,197 writing /tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/PKG-INFO 2023-09-11T02:01:32,201 writing dependency_links to /tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/dependency_links.txt 2023-09-11T02:01:32,203 writing top-level names to /tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/top_level.txt 2023-09-11T02:01:32,205 writing manifest file '/tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/SOURCES.txt' 2023-09-11T02:01:32,305 reading manifest file '/tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/SOURCES.txt' 2023-09-11T02:01:32,307 reading manifest template 'MANIFEST.in' 2023-09-11T02:01:32,308 warning: no files found matching 'deeptoolsintervals/tree.*' 2023-09-11T02:01:32,312 warning: no previously-included files found matching 'deeptoolsintervals.egg-info/*' 2023-09-11T02:01:32,313 warning: no previously-included files found matching 'dist/' 2023-09-11T02:01:32,314 writing manifest file '/tmp/pip-pip-egg-info-1b8_0e0x/deeptoolsintervals.egg-info/SOURCES.txt' 2023-09-11T02:01:32,423 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T02:01:32,426 Source in /tmp/pip-wheel-k6au8bgf/deeptoolsintervals_2cc5640851684c27b69da90be223938d has version 0.1.7, which satisfies requirement deeptoolsintervals==0.1.7 from https://files.pythonhosted.org/packages/da/1a/af0e167859b4302a666729c25cbcab02cc147c29a11e0b8768ce324960ff/deeptoolsintervals-0.1.7.tar.gz 2023-09-11T02:01:32,427 Removed deeptoolsintervals==0.1.7 from https://files.pythonhosted.org/packages/da/1a/af0e167859b4302a666729c25cbcab02cc147c29a11e0b8768ce324960ff/deeptoolsintervals-0.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-jg9r84jg' 2023-09-11T02:01:32,431 Created temporary directory: /tmp/pip-unpack-k72fdd_o 2023-09-11T02:01:32,432 Created temporary directory: /tmp/pip-unpack-oe4pja_m 2023-09-11T02:01:32,434 Building wheels for collected packages: deeptoolsintervals 2023-09-11T02:01:32,438 Created temporary directory: /tmp/pip-wheel-o2vytjp2 2023-09-11T02:01:32,439 Building wheel for deeptoolsintervals (setup.py): started 2023-09-11T02:01:32,440 Destination directory: /tmp/pip-wheel-o2vytjp2 2023-09-11T02:01:32,440 Running command python setup.py bdist_wheel 2023-09-11T02:01:32,941 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'classifier' 2023-09-11T02:01:32,942 warnings.warn(msg) 2023-09-11T02:01:33,462 running bdist_wheel 2023-09-11T02:01:33,557 running build 2023-09-11T02:01:33,558 running build_py 2023-09-11T02:01:33,584 creating build 2023-09-11T02:01:33,585 creating build/lib.linux-armv7l-cpython-311 2023-09-11T02:01:33,586 creating build/lib.linux-armv7l-cpython-311/deeptoolsintervals 2023-09-11T02:01:33,587 copying deeptoolsintervals/__init__.py -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals 2023-09-11T02:01:33,589 copying deeptoolsintervals/parse.py -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals 2023-09-11T02:01:33,592 copying deeptoolsintervals/enrichment.py -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals 2023-09-11T02:01:33,593 running egg_info 2023-09-11T02:01:33,649 writing deeptoolsintervals.egg-info/PKG-INFO 2023-09-11T02:01:33,652 writing dependency_links to deeptoolsintervals.egg-info/dependency_links.txt 2023-09-11T02:01:33,654 writing top-level names to deeptoolsintervals.egg-info/top_level.txt 2023-09-11T02:01:33,680 reading manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' 2023-09-11T02:01:33,682 reading manifest template 'MANIFEST.in' 2023-09-11T02:01:33,683 warning: no files found matching 'deeptoolsintervals/tree.*' 2023-09-11T02:01:33,686 warning: no previously-included files found matching 'dist/' 2023-09-11T02:01:33,689 writing manifest file 'deeptoolsintervals.egg-info/SOURCES.txt' 2023-09-11T02:01:33,691 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.test' is absent from the `packages` configuration. 2023-09-11T02:01:33,691 !! 2023-09-11T02:01:33,692 ******************************************************************************** 2023-09-11T02:01:33,693 ############################ 2023-09-11T02:01:33,693 # Package would be ignored # 2023-09-11T02:01:33,694 ############################ 2023-09-11T02:01:33,694 Python recognizes 'deeptoolsintervals.test' as an importable package[^1], 2023-09-11T02:01:33,695 but it is absent from setuptools' `packages` configuration. 2023-09-11T02:01:33,696 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-11T02:01:33,697 package, please make sure that 'deeptoolsintervals.test' is explicitly added 2023-09-11T02:01:33,697 to the `packages` configuration field. 2023-09-11T02:01:33,698 Alternatively, you can also rely on setuptools' discovery methods 2023-09-11T02:01:33,699 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-11T02:01:33,699 instead of `find_packages(...)`/`find:`). 2023-09-11T02:01:33,700 You can read more about "package discovery" on setuptools documentation page: 2023-09-11T02:01:33,701 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-11T02:01:33,702 If you don't want 'deeptoolsintervals.test' to be distributed and are 2023-09-11T02:01:33,702 already explicitly excluding 'deeptoolsintervals.test' via 2023-09-11T02:01:33,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-11T02:01:33,703 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-11T02:01:33,703 combination with a more fine grained `package-data` configuration. 2023-09-11T02:01:33,704 You can read more about "package data files" on setuptools documentation page: 2023-09-11T02:01:33,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-11T02:01:33,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-11T02:01:33,707 even if it does not contain any `.py` files. 2023-09-11T02:01:33,708 On the other hand, currently there is no concept of package data 2023-09-11T02:01:33,708 directory, all directories are treated like packages. 2023-09-11T02:01:33,709 ******************************************************************************** 2023-09-11T02:01:33,710 !! 2023-09-11T02:01:33,710 check.warn(importable) 2023-09-11T02:01:33,711 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'deeptoolsintervals.tree' is absent from the `packages` configuration. 2023-09-11T02:01:33,711 !! 2023-09-11T02:01:33,712 ******************************************************************************** 2023-09-11T02:01:33,712 ############################ 2023-09-11T02:01:33,713 # Package would be ignored # 2023-09-11T02:01:33,713 ############################ 2023-09-11T02:01:33,714 Python recognizes 'deeptoolsintervals.tree' as an importable package[^1], 2023-09-11T02:01:33,714 but it is absent from setuptools' `packages` configuration. 2023-09-11T02:01:33,715 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-11T02:01:33,716 package, please make sure that 'deeptoolsintervals.tree' is explicitly added 2023-09-11T02:01:33,716 to the `packages` configuration field. 2023-09-11T02:01:33,717 Alternatively, you can also rely on setuptools' discovery methods 2023-09-11T02:01:33,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-11T02:01:33,718 instead of `find_packages(...)`/`find:`). 2023-09-11T02:01:33,720 You can read more about "package discovery" on setuptools documentation page: 2023-09-11T02:01:33,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-11T02:01:33,722 If you don't want 'deeptoolsintervals.tree' to be distributed and are 2023-09-11T02:01:33,722 already explicitly excluding 'deeptoolsintervals.tree' via 2023-09-11T02:01:33,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-11T02:01:33,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-11T02:01:33,724 combination with a more fine grained `package-data` configuration. 2023-09-11T02:01:33,725 You can read more about "package data files" on setuptools documentation page: 2023-09-11T02:01:33,726 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-11T02:01:33,727 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-11T02:01:33,727 even if it does not contain any `.py` files. 2023-09-11T02:01:33,728 On the other hand, currently there is no concept of package data 2023-09-11T02:01:33,729 directory, all directories are treated like packages. 2023-09-11T02:01:33,729 ******************************************************************************** 2023-09-11T02:01:33,730 !! 2023-09-11T02:01:33,730 check.warn(importable) 2023-09-11T02:01:33,731 creating build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,731 copying deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,731 copying deeptoolsintervals/test/GRCh38.84.bed -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,732 copying deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,732 copying deeptoolsintervals/test/GRCh38.84.bed2 -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,733 copying deeptoolsintervals/test/GRCh38.84.bed6 -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,733 copying deeptoolsintervals/test/GRCh38.84.gtf.gz -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,734 copying deeptoolsintervals/test/GRCh38.84.labels.bed -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,734 copying deeptoolsintervals/test/noOverlaps.bed -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,735 copying deeptoolsintervals/test/strands.bed -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test 2023-09-11T02:01:33,735 creating build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,736 copying deeptoolsintervals/tree/findOverlaps.c -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,736 copying deeptoolsintervals/tree/gtf.c -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,737 copying deeptoolsintervals/tree/gtf.h -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,737 copying deeptoolsintervals/tree/hashTable.c -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,738 copying deeptoolsintervals/tree/kseq.h -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,738 copying deeptoolsintervals/tree/kstring.h -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,739 copying deeptoolsintervals/tree/murmur3.c -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,739 copying deeptoolsintervals/tree/murmur3.h -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,740 copying deeptoolsintervals/tree/tree.c -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,740 copying deeptoolsintervals/tree/tree.h -> build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:33,742 running build_ext 2023-09-11T02:01:34,247 building 'deeptoolsintervals.tree' extension 2023-09-11T02:01:34,248 creating build/temp.linux-armv7l-cpython-311 2023-09-11T02:01:34,249 creating build/temp.linux-armv7l-cpython-311/deeptoolsintervals 2023-09-11T02:01:34,250 creating build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree 2023-09-11T02:01:34,251 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/findOverlaps.c -o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/findOverlaps.o 2023-09-11T02:01:36,261 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/gtf.c -o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/gtf.o 2023-09-11T02:01:36,365 deeptoolsintervals/tree/gtf.c: In function ‘destroyGTFtree’: 2023-09-11T02:01:36,365 deeptoolsintervals/tree/gtf.c:58:15: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-09-11T02:01:36,366 58 | for(i=0; in_targets; i++) { 2023-09-11T02:01:36,366 | ^ 2023-09-11T02:01:37,261 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/hashTable.c -o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/hashTable.o 2023-09-11T02:01:37,365 deeptoolsintervals/tree/hashTable.c: In function ‘rehashHT’: 2023-09-11T02:01:37,366 deeptoolsintervals/tree/hashTable.c:55:15: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-11T02:01:37,366 55 | for(i=0; il; i++) { 2023-09-11T02:01:37,367 | ^ 2023-09-11T02:01:37,367 deeptoolsintervals/tree/hashTable.c: In function ‘growHT’: 2023-09-11T02:01:37,368 deeptoolsintervals/tree/hashTable.c:72:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-11T02:01:37,369 72 | for(i=ht->l; im; i++) { 2023-09-11T02:01:37,369 | ^ 2023-09-11T02:01:37,370 deeptoolsintervals/tree/hashTable.c: In function ‘destroyHT’: 2023-09-11T02:01:37,371 deeptoolsintervals/tree/hashTable.c:103:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-11T02:01:37,372 103 | for(i=0; il; i++) free(ht->str[i]); 2023-09-11T02:01:37,373 | ^ 2023-09-11T02:01:37,373 deeptoolsintervals/tree/hashTable.c:105:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-11T02:01:37,374 105 | for(i=0; im; i++) { 2023-09-11T02:01:37,375 | ^ 2023-09-11T02:01:37,376 deeptoolsintervals/tree/hashTable.c: In function ‘val2strHT’: 2023-09-11T02:01:37,377 deeptoolsintervals/tree/hashTable.c:139:11: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-09-11T02:01:37,377 139 | if(val>=ht->l) return NULL; 2023-09-11T02:01:37,378 | ^~ 2023-09-11T02:01:37,637 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/murmur3.c -o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/murmur3.o 2023-09-11T02:01:38,217 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -I/usr/include/python3.11 -c deeptoolsintervals/tree/tree.c -o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/tree.o 2023-09-11T02:01:38,580 deeptoolsintervals/tree/tree.c: In function ‘Numeric2Uint’: 2023-09-11T02:01:38,580 deeptoolsintervals/tree/tree.c:49:10: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2023-09-11T02:01:38,581 49 | if(l > 0xFFFFFFFF) { 2023-09-11T02:01:38,582 | ^ 2023-09-11T02:01:39,016 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/findOverlaps.o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/gtf.o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/hashTable.o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/murmur3.o build/temp.linux-armv7l-cpython-311/deeptoolsintervals/tree/tree.o -L/usr/lib/arm-linux-gnueabihf -L/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lz -lpython3.11 -o build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree.cpython-311-arm-linux-gnueabihf.so 2023-09-11T02:01:39,169 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-11T02:01:39,170 !! 2023-09-11T02:01:39,171 ******************************************************************************** 2023-09-11T02:01:39,171 Please avoid running ``setup.py`` directly. 2023-09-11T02:01:39,172 Instead, use pypa/build, pypa/installer or other 2023-09-11T02:01:39,172 standards-based tools. 2023-09-11T02:01:39,173 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-11T02:01:39,174 ******************************************************************************** 2023-09-11T02:01:39,175 !! 2023-09-11T02:01:39,175 self.initialize_options() 2023-09-11T02:01:39,194 installing to build/bdist.linux-armv7l/wheel 2023-09-11T02:01:39,194 running install 2023-09-11T02:01:39,217 running install_lib 2023-09-11T02:01:39,242 creating build/bdist.linux-armv7l 2023-09-11T02:01:39,242 creating build/bdist.linux-armv7l/wheel 2023-09-11T02:01:39,244 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals 2023-09-11T02:01:39,245 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,246 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.bed -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,248 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.2.gtf.gz -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,250 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/strands.bed -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,252 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.bed12.bz2 -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,253 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.bed2 -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,255 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.gtf.gz -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,257 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/noOverlaps.bed -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,259 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.bed6 -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,260 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/test/GRCh38.84.labels.bed -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/test 2023-09-11T02:01:39,262 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/deeptoolsintervals 2023-09-11T02:01:39,267 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/__init__.py -> build/bdist.linux-armv7l/wheel/deeptoolsintervals 2023-09-11T02:01:39,269 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/parse.py -> build/bdist.linux-armv7l/wheel/deeptoolsintervals 2023-09-11T02:01:39,271 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/enrichment.py -> build/bdist.linux-armv7l/wheel/deeptoolsintervals 2023-09-11T02:01:39,274 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,275 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/murmur3.h -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,277 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/gtf.h -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,279 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/murmur3.c -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,281 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/findOverlaps.c -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,283 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/hashTable.c -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,285 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/tree.h -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,287 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/kstring.h -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,289 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/tree.c -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,291 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/gtf.c -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,294 copying build/lib.linux-armv7l-cpython-311/deeptoolsintervals/tree/kseq.h -> build/bdist.linux-armv7l/wheel/deeptoolsintervals/tree 2023-09-11T02:01:39,296 running install_egg_info 2023-09-11T02:01:39,326 Copying deeptoolsintervals.egg-info to build/bdist.linux-armv7l/wheel/deeptoolsintervals-0.1.7-py3.11.egg-info 2023-09-11T02:01:39,338 running install_scripts 2023-09-11T02:01:39,388 creating build/bdist.linux-armv7l/wheel/deeptoolsintervals-0.1.7.dist-info/WHEEL 2023-09-11T02:01:39,390 creating '/tmp/pip-wheel-o2vytjp2/deeptoolsintervals-0.1.7-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-11T02:01:39,392 adding 'deeptoolsintervals/__init__.py' 2023-09-11T02:01:39,394 adding 'deeptoolsintervals/enrichment.py' 2023-09-11T02:01:39,398 adding 'deeptoolsintervals/parse.py' 2023-09-11T02:01:39,427 adding 'deeptoolsintervals/tree.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T02:01:39,430 adding 'deeptoolsintervals/test/GRCh38.84.2.gtf.gz' 2023-09-11T02:01:39,432 adding 'deeptoolsintervals/test/GRCh38.84.bed' 2023-09-11T02:01:39,433 adding 'deeptoolsintervals/test/GRCh38.84.bed12.bz2' 2023-09-11T02:01:39,435 adding 'deeptoolsintervals/test/GRCh38.84.bed2' 2023-09-11T02:01:39,436 adding 'deeptoolsintervals/test/GRCh38.84.bed6' 2023-09-11T02:01:39,437 adding 'deeptoolsintervals/test/GRCh38.84.gtf.gz' 2023-09-11T02:01:39,438 adding 'deeptoolsintervals/test/GRCh38.84.labels.bed' 2023-09-11T02:01:39,440 adding 'deeptoolsintervals/test/noOverlaps.bed' 2023-09-11T02:01:39,441 adding 'deeptoolsintervals/test/strands.bed' 2023-09-11T02:01:39,444 adding 'deeptoolsintervals/tree/findOverlaps.c' 2023-09-11T02:01:39,446 adding 'deeptoolsintervals/tree/gtf.c' 2023-09-11T02:01:39,448 adding 'deeptoolsintervals/tree/gtf.h' 2023-09-11T02:01:39,450 adding 'deeptoolsintervals/tree/hashTable.c' 2023-09-11T02:01:39,451 adding 'deeptoolsintervals/tree/kseq.h' 2023-09-11T02:01:39,453 adding 'deeptoolsintervals/tree/kstring.h' 2023-09-11T02:01:39,455 adding 'deeptoolsintervals/tree/murmur3.c' 2023-09-11T02:01:39,456 adding 'deeptoolsintervals/tree/murmur3.h' 2023-09-11T02:01:39,458 adding 'deeptoolsintervals/tree/tree.c' 2023-09-11T02:01:39,460 adding 'deeptoolsintervals/tree/tree.h' 2023-09-11T02:01:39,462 adding 'deeptoolsintervals-0.1.7.dist-info/METADATA' 2023-09-11T02:01:39,463 adding 'deeptoolsintervals-0.1.7.dist-info/WHEEL' 2023-09-11T02:01:39,464 adding 'deeptoolsintervals-0.1.7.dist-info/top_level.txt' 2023-09-11T02:01:39,465 adding 'deeptoolsintervals-0.1.7.dist-info/RECORD' 2023-09-11T02:01:39,467 removing build/bdist.linux-armv7l/wheel 2023-09-11T02:01:39,618 Building wheel for deeptoolsintervals (setup.py): finished with status 'done' 2023-09-11T02:01:39,621 Created wheel for deeptoolsintervals: filename=deeptoolsintervals-0.1.7-cp311-cp311-linux_armv7l.whl size=110406 sha256=dfa3923a42bb5707a468d8b6f97f92bd937a3d3e7ba8710cb2d611d6b5547a77 2023-09-11T02:01:39,623 Stored in directory: /tmp/pip-ephem-wheel-cache-1hf_9uki/wheels/86/70/76/6e890e4f6f5b94e3641027a30bd106b73c66609300331d6857 2023-09-11T02:01:39,632 Successfully built deeptoolsintervals 2023-09-11T02:01:39,639 Removed build tracker: '/tmp/pip-build-tracker-jg9r84jg'