2023-09-11T02:48:49,364 Created temporary directory: /tmp/pip-build-tracker-sqlj18bc 2023-09-11T02:48:49,365 Initialized build tracking at /tmp/pip-build-tracker-sqlj18bc 2023-09-11T02:48:49,365 Created build tracker: /tmp/pip-build-tracker-sqlj18bc 2023-09-11T02:48:49,366 Entered build tracker: /tmp/pip-build-tracker-sqlj18bc 2023-09-11T02:48:49,367 Created temporary directory: /tmp/pip-wheel-8vofjrl8 2023-09-11T02:48:49,369 Created temporary directory: /tmp/pip-ephem-wheel-cache-wju4x3iq 2023-09-11T02:48:49,391 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T02:48:49,395 2 location(s) to search for versions of parmed: 2023-09-11T02:48:49,395 * https://pypi.org/simple/parmed/ 2023-09-11T02:48:49,395 * https://www.piwheels.org/simple/parmed/ 2023-09-11T02:48:49,396 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-11T02:48:49,396 Getting page https://pypi.org/simple/parmed/ 2023-09-11T02:48:49,398 Found index url https://pypi.org/simple/ 2023-09-11T02:48:49,629 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-11T02:48:49,633 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-11T02:48:49,633 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-11T02:48:49,634 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-11T02:48:49,635 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-11T02:48:49,635 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-11T02:48:49,636 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-11T02:48:49,637 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-11T02:48:49,637 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-11T02:48:49,638 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-11T02:48:49,639 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-11T02:48:49,640 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-11T02:48:49,640 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-11T02:48:49,641 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-11T02:48:49,642 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-11T02:48:49,643 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-11T02:48:49,644 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-11T02:48:49,644 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-11T02:48:49,646 Found index url https://www.piwheels.org/simple/ 2023-09-11T02:48:49,932 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-11T02:48:49,958 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,032 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,033 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,034 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,035 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,035 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,036 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-11T02:48:50,036 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-11T02:48:50,037 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-11T02:48:50,069 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-11T02:48:50,089 Collecting parmed==3.1.0 2023-09-11T02:48:50,091 Created temporary directory: /tmp/pip-unpack-iy_ci1q1 2023-09-11T02:48:51,566 Downloading ParmEd-3.1.0.tar.gz (1.6 MB) 2023-09-11T02:48:52,458 Added parmed==3.1.0 from https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-sqlj18bc' 2023-09-11T02:48:52,460 Running setup.py (path:/tmp/pip-wheel-8vofjrl8/parmed_9d4e8ec30b494c29970d4bd7d85d0480/setup.py) egg_info for package parmed 2023-09-11T02:48:52,460 Created temporary directory: /tmp/pip-pip-egg-info-iehwb55e 2023-09-11T02:48:52,461 Preparing metadata (setup.py): started 2023-09-11T02:48:52,462 Running command python setup.py egg_info 2023-09-11T02:48:53,535 running egg_info 2023-09-11T02:48:53,536 creating /tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info 2023-09-11T02:48:53,561 writing /tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/PKG-INFO 2023-09-11T02:48:53,564 writing dependency_links to /tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/dependency_links.txt 2023-09-11T02:48:53,565 writing entry points to /tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/entry_points.txt 2023-09-11T02:48:53,567 writing top-level names to /tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/top_level.txt 2023-09-11T02:48:53,568 writing manifest file '/tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/SOURCES.txt' 2023-09-11T02:48:53,639 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-11T02:48:53,662 reading manifest file '/tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/SOURCES.txt' 2023-09-11T02:48:53,663 reading manifest template 'MANIFEST.in' 2023-09-11T02:48:53,684 writing manifest file '/tmp/pip-pip-egg-info-iehwb55e/ParmEd.egg-info/SOURCES.txt' 2023-09-11T02:48:53,793 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T02:48:53,796 Source in /tmp/pip-wheel-8vofjrl8/parmed_9d4e8ec30b494c29970d4bd7d85d0480 has version 3.1.0, which satisfies requirement parmed==3.1.0 from https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz 2023-09-11T02:48:53,797 Removed parmed==3.1.0 from https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-sqlj18bc' 2023-09-11T02:48:53,801 Created temporary directory: /tmp/pip-unpack-v2ckeim5 2023-09-11T02:48:53,802 Created temporary directory: /tmp/pip-unpack-fmwe42tb 2023-09-11T02:48:53,804 Building wheels for collected packages: parmed 2023-09-11T02:48:53,808 Created temporary directory: /tmp/pip-wheel-o5pq5itz 2023-09-11T02:48:53,808 Building wheel for parmed (setup.py): started 2023-09-11T02:48:53,809 Destination directory: /tmp/pip-wheel-o5pq5itz 2023-09-11T02:48:53,810 Running command python setup.py bdist_wheel 2023-09-11T02:48:54,840 running bdist_wheel 2023-09-11T02:48:54,937 running build 2023-09-11T02:48:54,938 running build_py 2023-09-11T02:48:54,944 creating build 2023-09-11T02:48:54,944 creating build/lib.linux-armv7l-cpython-311 2023-09-11T02:48:54,946 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,948 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,953 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,957 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,963 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,969 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,975 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,977 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,983 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,986 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,991 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,993 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,996 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:54,997 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T02:48:55,000 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,001 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,004 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,007 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,010 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,013 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,015 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,017 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,020 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,022 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,025 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,027 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,032 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T02:48:55,036 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T02:48:55,037 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T02:48:55,040 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T02:48:55,042 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T02:48:55,044 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,045 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,047 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,049 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,051 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,054 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T02:48:55,057 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,057 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,059 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,061 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,063 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,066 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,068 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,069 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,071 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,073 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,076 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,078 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,080 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T02:48:55,083 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,084 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,087 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,088 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,090 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,092 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,095 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T02:48:55,097 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,098 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,101 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,103 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,106 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,109 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T02:48:55,112 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,113 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T02:48:55,114 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T02:48:55,116 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T02:48:55,118 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T02:48:55,120 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T02:48:55,123 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T02:48:55,124 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T02:48:55,126 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T02:48:55,128 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T02:48:55,129 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T02:48:55,130 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T02:48:55,133 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,137 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,139 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,141 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,143 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,145 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,148 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T02:48:55,151 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,151 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,152 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,154 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,156 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,158 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,160 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,162 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,164 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,166 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,169 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,171 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,173 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T02:48:55,176 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,177 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,179 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,181 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,183 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,186 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,189 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T02:48:55,191 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,194 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,196 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,198 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,200 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,202 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,204 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,206 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T02:48:55,209 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,209 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,213 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,216 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,218 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,219 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T02:48:55,223 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,224 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,226 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,228 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,230 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,232 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,234 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,237 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,239 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,241 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,243 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,246 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,248 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T02:48:55,254 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T02:48:55,255 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T02:48:55,257 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T02:48:55,259 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,260 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,263 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,265 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,266 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,268 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,270 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T02:48:55,274 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T02:48:55,275 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T02:48:55,277 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T02:48:55,279 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T02:48:55,284 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-11T02:48:55,285 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-11T02:48:55,298 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-11T02:48:55,299 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.1.0' 2023-09-11T02:48:55,300 running build_ext 2023-09-11T02:48:55,817 building 'parmed.amber._rdparm' extension 2023-09-11T02:48:55,818 creating build/temp.linux-armv7l-cpython-311 2023-09-11T02:48:55,818 creating build/temp.linux-armv7l-cpython-311/src 2023-09-11T02:48:55,819 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-8vofjrl8/parmed_9d4e8ec30b494c29970d4bd7d85d0480/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-11T02:49:01,454 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-8vofjrl8/parmed_9d4e8ec30b494c29970d4bd7d85d0480/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-11T02:49:04,597 In file included from /usr/include/c++/12/vector:70, 2023-09-11T02:49:04,598 from src/readparm.h:8, 2023-09-11T02:49:04,598 from src/readparm.cpp:10: 2023-09-11T02:49:04,599 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-11T02:49:04,600 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T02:49:04,601 439 | vector<_Tp, _Alloc>:: 2023-09-11T02:49:04,601 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T02:49:05,685 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-11T02:49:05,686 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-11T02:49:05,687 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-11T02:49:05,687 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T02:49:05,815 In file included from /usr/include/c++/12/vector:64: 2023-09-11T02:49:05,815 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T02:49:05,816 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-11T02:49:05,817 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T02:49:05,817 1287 | _M_realloc_insert(end(), __x); 2023-09-11T02:49:05,818 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T02:49:05,820 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T02:49:05,820 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-11T02:49:05,821 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T02:49:05,822 1287 | _M_realloc_insert(end(), __x); 2023-09-11T02:49:05,822 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T02:49:05,825 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T02:49:05,825 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-11T02:49:05,826 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T02:49:05,826 1287 | _M_realloc_insert(end(), __x); 2023-09-11T02:49:05,827 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T02:49:07,572 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-11T02:49:07,867 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-11T02:49:07,868 !! 2023-09-11T02:49:07,869 ******************************************************************************** 2023-09-11T02:49:07,869 Please avoid running ``setup.py`` directly. 2023-09-11T02:49:07,870 Instead, use pypa/build, pypa/installer or other 2023-09-11T02:49:07,870 standards-based tools. 2023-09-11T02:49:07,872 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-11T02:49:07,872 ******************************************************************************** 2023-09-11T02:49:07,873 !! 2023-09-11T02:49:07,874 self.initialize_options() 2023-09-11T02:49:07,893 installing to build/bdist.linux-armv7l/wheel 2023-09-11T02:49:07,893 running install 2023-09-11T02:49:07,917 running install_lib 2023-09-11T02:49:07,941 creating build/bdist.linux-armv7l 2023-09-11T02:49:07,942 creating build/bdist.linux-armv7l/wheel 2023-09-11T02:49:07,944 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:07,945 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:07,946 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:07,949 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,950 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,953 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,956 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,958 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,960 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,962 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,965 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T02:49:07,966 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T02:49:07,969 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T02:49:07,971 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T02:49:07,973 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T02:49:07,975 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T02:49:07,978 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T02:49:07,979 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T02:49:07,981 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T02:49:07,983 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:07,986 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,986 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,989 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,991 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,994 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,997 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T02:49:07,999 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,001 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,003 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,005 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,010 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,013 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T02:49:08,014 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T02:49:08,016 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T02:49:08,018 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,019 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,022 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,025 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,027 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,030 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,031 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,034 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,036 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,038 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,040 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,042 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T02:49:08,044 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,047 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,048 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,070 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,074 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,076 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,079 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,082 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,085 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T02:49:08,089 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,090 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,094 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,096 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,098 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,100 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T02:49:08,103 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,104 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,106 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,108 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,111 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,113 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T02:49:08,116 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,118 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T02:49:08,119 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T02:49:08,120 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T02:49:08,123 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T02:49:08,127 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,128 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,131 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,133 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,135 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,138 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,140 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,143 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,144 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,147 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,150 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,152 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,154 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,156 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T02:49:08,159 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,161 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,164 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,168 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,172 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T02:49:08,179 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T02:49:08,180 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T02:49:08,183 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T02:49:08,185 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T02:49:08,187 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-11T02:49:08,188 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-11T02:49:08,193 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T02:49:08,194 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T02:49:08,196 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T02:49:08,198 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,199 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,202 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,204 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,206 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,208 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,210 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,213 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,215 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T02:49:08,218 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,219 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,221 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,223 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,225 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,227 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,229 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,231 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,233 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,236 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,238 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,240 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T02:49:08,242 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,247 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,250 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,252 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,255 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,256 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,258 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,261 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,262 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,265 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,268 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T02:49:08,270 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T02:49:08,272 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,273 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,275 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,277 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,279 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,282 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,284 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,285 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,287 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,289 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,292 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,294 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,297 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T02:49:08,299 running install_egg_info 2023-09-11T02:49:08,361 running egg_info 2023-09-11T02:49:08,385 writing ParmEd.egg-info/PKG-INFO 2023-09-11T02:49:08,388 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-11T02:49:08,390 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-11T02:49:08,392 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-11T02:49:08,428 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-11T02:49:08,453 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-11T02:49:08,462 reading manifest template 'MANIFEST.in' 2023-09-11T02:49:08,483 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-11T02:49:08,485 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.1.0-py3.11.egg-info 2023-09-11T02:49:08,495 running install_scripts 2023-09-11T02:49:08,547 creating build/bdist.linux-armv7l/wheel/ParmEd-3.1.0.dist-info/WHEEL 2023-09-11T02:49:08,549 creating '/tmp/pip-wheel-o5pq5itz/ParmEd-3.1.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-11T02:49:08,552 adding 'parmed/__init__.py' 2023-09-11T02:49:08,554 adding 'parmed/_version.py' 2023-09-11T02:49:08,555 adding 'parmed/constants.py' 2023-09-11T02:49:08,557 adding 'parmed/exceptions.py' 2023-09-11T02:49:08,559 adding 'parmed/geometry.py' 2023-09-11T02:49:08,562 adding 'parmed/parameters.py' 2023-09-11T02:49:08,565 adding 'parmed/periodic_table.py' 2023-09-11T02:49:08,567 adding 'parmed/residue.py' 2023-09-11T02:49:08,569 adding 'parmed/scripts.py' 2023-09-11T02:49:08,589 adding 'parmed/structure.py' 2023-09-11T02:49:08,592 adding 'parmed/symmetry.py' 2023-09-11T02:49:08,612 adding 'parmed/topologyobjects.py' 2023-09-11T02:49:08,615 adding 'parmed/vec3.py' 2023-09-11T02:49:08,616 adding 'parmed/amber/__init__.py' 2023-09-11T02:49:08,627 adding 'parmed/amber/_amberparm.py' 2023-09-11T02:49:08,632 adding 'parmed/amber/_chamberparm.py' 2023-09-11T02:49:08,795 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T02:49:08,807 adding 'parmed/amber/_tinkerparm.py' 2023-09-11T02:49:08,811 adding 'parmed/amber/amberformat.py' 2023-09-11T02:49:08,814 adding 'parmed/amber/asciicrd.py' 2023-09-11T02:49:08,818 adding 'parmed/amber/mask.py' 2023-09-11T02:49:08,820 adding 'parmed/amber/netcdffiles.py' 2023-09-11T02:49:08,823 adding 'parmed/amber/offlib.py' 2023-09-11T02:49:08,827 adding 'parmed/amber/parameters.py' 2023-09-11T02:49:08,829 adding 'parmed/amber/readparm.py' 2023-09-11T02:49:08,834 adding 'parmed/amber/titratable_residues.py' 2023-09-11T02:49:08,836 adding 'parmed/amber/mdin/__init__.py' 2023-09-11T02:49:08,838 adding 'parmed/amber/mdin/cntrl.py' 2023-09-11T02:49:08,839 adding 'parmed/amber/mdin/ewald.py' 2023-09-11T02:49:08,842 adding 'parmed/amber/mdin/mdin.py' 2023-09-11T02:49:08,843 adding 'parmed/amber/mdin/pb.py' 2023-09-11T02:49:08,844 adding 'parmed/amber/mdin/qmmm.py' 2023-09-11T02:49:08,846 adding 'parmed/charmm/__init__.py' 2023-09-11T02:49:08,848 adding 'parmed/charmm/_charmmfile.py' 2023-09-11T02:49:08,850 adding 'parmed/charmm/charmmcrds.py' 2023-09-11T02:49:08,855 adding 'parmed/charmm/parameters.py' 2023-09-11T02:49:08,859 adding 'parmed/charmm/psf.py' 2023-09-11T02:49:08,861 adding 'parmed/formats/__init__.py' 2023-09-11T02:49:08,864 adding 'parmed/formats/mol2.py' 2023-09-11T02:49:08,872 adding 'parmed/formats/pdb.py' 2023-09-11T02:49:08,875 adding 'parmed/formats/pqr.py' 2023-09-11T02:49:08,877 adding 'parmed/formats/psf.py' 2023-09-11T02:49:08,878 adding 'parmed/formats/registry.py' 2023-09-11T02:49:08,880 adding 'parmed/formats/sdf.py' 2023-09-11T02:49:08,883 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-11T02:49:08,885 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-11T02:49:08,887 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-11T02:49:08,888 adding 'parmed/formats/pdbx/__init__.py' 2023-09-11T02:49:08,890 adding 'parmed/gromacs/__init__.py' 2023-09-11T02:49:08,892 adding 'parmed/gromacs/_cpp.py' 2023-09-11T02:49:08,894 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-11T02:49:08,896 adding 'parmed/gromacs/gromacsgro.py' 2023-09-11T02:49:08,906 adding 'parmed/gromacs/gromacstop.py' 2023-09-11T02:49:08,909 adding 'parmed/modeller/__init__.py' 2023-09-11T02:49:08,913 adding 'parmed/modeller/residue.py' 2023-09-11T02:49:08,915 adding 'parmed/modeller/standardtemplates.py' 2023-09-11T02:49:08,924 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-11T02:49:08,926 adding 'parmed/namd/__init__.py' 2023-09-11T02:49:08,928 adding 'parmed/namd/namdbinfiles.py' 2023-09-11T02:49:08,930 adding 'parmed/openmm/__init__.py' 2023-09-11T02:49:08,935 adding 'parmed/openmm/parameters.py' 2023-09-11T02:49:08,939 adding 'parmed/openmm/reporters.py' 2023-09-11T02:49:08,942 adding 'parmed/openmm/topsystem.py' 2023-09-11T02:49:08,943 adding 'parmed/openmm/utils.py' 2023-09-11T02:49:08,945 adding 'parmed/openmm/xmlfile.py' 2023-09-11T02:49:08,947 adding 'parmed/rdkit/__init__.py' 2023-09-11T02:49:08,948 adding 'parmed/rdkit/rdkit.py' 2023-09-11T02:49:08,950 adding 'parmed/rosetta/__init__.py' 2023-09-11T02:49:08,951 adding 'parmed/rosetta/pose.py' 2023-09-11T02:49:08,953 adding 'parmed/tinker/__init__.py' 2023-09-11T02:49:08,955 adding 'parmed/tinker/parameterfile.py' 2023-09-11T02:49:08,958 adding 'parmed/tinker/system.py' 2023-09-11T02:49:08,960 adding 'parmed/tinker/tinkerfiles.py' 2023-09-11T02:49:08,962 adding 'parmed/tinker/topologyobjects.py' 2023-09-11T02:49:08,964 adding 'parmed/tools/__init__.py' 2023-09-11T02:49:08,985 adding 'parmed/tools/actions.py' 2023-09-11T02:49:08,989 adding 'parmed/tools/add1264.py' 2023-09-11T02:49:08,990 adding 'parmed/tools/addljtype.py' 2023-09-11T02:49:08,992 adding 'parmed/tools/argumentlist.py' 2023-09-11T02:49:08,993 adding 'parmed/tools/changeradii.py' 2023-09-11T02:49:08,996 adding 'parmed/tools/checkvalidity.py' 2023-09-11T02:49:08,997 adding 'parmed/tools/coarsegrain.py' 2023-09-11T02:49:08,999 adding 'parmed/tools/exceptions.py' 2023-09-11T02:49:09,001 adding 'parmed/tools/logos.py' 2023-09-11T02:49:09,004 adding 'parmed/tools/parmed_cmd.py' 2023-09-11T02:49:09,005 adding 'parmed/tools/parmlist.py' 2023-09-11T02:49:09,007 adding 'parmed/tools/gui/__init__.py' 2023-09-11T02:49:09,011 adding 'parmed/tools/gui/_guiactions.py' 2023-09-11T02:49:09,013 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-11T02:49:09,014 adding 'parmed/tools/gui/guiactions.py' 2023-09-11T02:49:09,015 adding 'parmed/tools/gui/guifiletools.py' 2023-09-11T02:49:09,017 adding 'parmed/tools/gui/guitools.py' 2023-09-11T02:49:09,018 adding 'parmed/tools/simulations/__init__.py' 2023-09-11T02:49:09,023 adding 'parmed/tools/simulations/openmm.py' 2023-09-11T02:49:09,025 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-11T02:49:09,027 adding 'parmed/unit/__init__.py' 2023-09-11T02:49:09,029 adding 'parmed/unit/basedimension.py' 2023-09-11T02:49:09,030 adding 'parmed/unit/baseunit.py' 2023-09-11T02:49:09,031 adding 'parmed/unit/constants.py' 2023-09-11T02:49:09,033 adding 'parmed/unit/mymatrix.py' 2023-09-11T02:49:09,035 adding 'parmed/unit/prefix.py' 2023-09-11T02:49:09,039 adding 'parmed/unit/quantity.py' 2023-09-11T02:49:09,040 adding 'parmed/unit/standard_dimensions.py' 2023-09-11T02:49:09,044 adding 'parmed/unit/unit.py' 2023-09-11T02:49:09,046 adding 'parmed/unit/unit_definitions.py' 2023-09-11T02:49:09,048 adding 'parmed/unit/unit_math.py' 2023-09-11T02:49:09,049 adding 'parmed/unit/unit_operators.py' 2023-09-11T02:49:09,051 adding 'parmed/utils/__init__.py' 2023-09-11T02:49:09,053 adding 'parmed/utils/decorators.py' 2023-09-11T02:49:09,054 adding 'parmed/utils/io.py' 2023-09-11T02:49:09,059 adding 'parmed/utils/netcdf.py' 2023-09-11T02:49:09,061 adding 'parmed/utils/pairlist.py' 2023-09-11T02:49:09,063 adding 'parmed/utils/pandautils.py' 2023-09-11T02:49:09,067 adding 'parmed/utils/six.py' 2023-09-11T02:49:09,068 adding 'parmed/utils/timer.py' 2023-09-11T02:49:09,070 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-11T02:49:09,072 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-11T02:49:09,073 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-11T02:49:09,074 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-11T02:49:09,076 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-11T02:49:09,078 adding 'parmed/utils/fortranformat/_input.py' 2023-09-11T02:49:09,079 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-11T02:49:09,081 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-11T02:49:09,084 adding 'parmed/utils/fortranformat/_output.py' 2023-09-11T02:49:09,086 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-11T02:49:09,088 adding 'parmed/utils/fortranformat/config.py' 2023-09-11T02:49:09,089 adding 'ParmEd-3.1.0.dist-info/METADATA' 2023-09-11T02:49:09,090 adding 'ParmEd-3.1.0.dist-info/WHEEL' 2023-09-11T02:49:09,091 adding 'ParmEd-3.1.0.dist-info/entry_points.txt' 2023-09-11T02:49:09,092 adding 'ParmEd-3.1.0.dist-info/top_level.txt' 2023-09-11T02:49:09,094 adding 'ParmEd-3.1.0.dist-info/RECORD' 2023-09-11T02:49:09,105 removing build/bdist.linux-armv7l/wheel 2023-09-11T02:49:09,286 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-11T02:49:09,299 Created wheel for parmed: filename=ParmEd-3.1.0-cp311-cp311-linux_armv7l.whl size=868653 sha256=1b3c32e7ad038d9eb3d9b0ccefe8891ca01213777b981a9241f47f56f30244eb 2023-09-11T02:49:09,300 Stored in directory: /tmp/pip-ephem-wheel-cache-wju4x3iq/wheels/6e/8a/96/1377c6b37ccf07f0de892ae2957ddd83c9d7a4c820076bf9ef 2023-09-11T02:49:09,313 Successfully built parmed 2023-09-11T02:49:09,346 Removed build tracker: '/tmp/pip-build-tracker-sqlj18bc'