2023-09-11T06:39:48,684 Created temporary directory: /tmp/pip-build-tracker-i_43qm9y 2023-09-11T06:39:48,685 Initialized build tracking at /tmp/pip-build-tracker-i_43qm9y 2023-09-11T06:39:48,686 Created build tracker: /tmp/pip-build-tracker-i_43qm9y 2023-09-11T06:39:48,686 Entered build tracker: /tmp/pip-build-tracker-i_43qm9y 2023-09-11T06:39:48,687 Created temporary directory: /tmp/pip-wheel-hyjvpn7i 2023-09-11T06:39:48,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-_ksxzaui 2023-09-11T06:39:48,711 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T06:39:48,715 2 location(s) to search for versions of teca: 2023-09-11T06:39:48,715 * https://pypi.org/simple/teca/ 2023-09-11T06:39:48,715 * https://www.piwheels.org/simple/teca/ 2023-09-11T06:39:48,716 Fetching project page and analyzing links: https://pypi.org/simple/teca/ 2023-09-11T06:39:48,717 Getting page https://pypi.org/simple/teca/ 2023-09-11T06:39:48,718 Found index url https://pypi.org/simple/ 2023-09-11T06:39:48,933 Fetched page https://pypi.org/simple/teca/ as application/vnd.pypi.simple.v1+json 2023-09-11T06:39:48,935 Found link https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz (from https://pypi.org/simple/teca/), version: 2.2.1 2023-09-11T06:39:48,936 Found link https://files.pythonhosted.org/packages/10/27/510206a68b8456016add7c84da0ea738229ccfd9a6eb4ee0324dff0080af/teca-2.2.2.tar.gz (from https://pypi.org/simple/teca/), version: 2.2.2 2023-09-11T06:39:48,936 Found link https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 3.0.0 2023-09-11T06:39:48,937 Found link https://files.pythonhosted.org/packages/e5/4a/820ff10f8df871229d44d74b2d31a224323e77d9f5215a2af5b4ec8f21a0/teca-4.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 4.0.0 2023-09-11T06:39:48,938 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/70/4b/3ecb17552872c808d9b3f16d428780dae6a6fbb1c3dfdf1fa7af11141f2c/teca-4.1.0-py3.9-linux-x86_64.egg (from https://pypi.org/simple/teca/) 2023-09-11T06:39:48,938 Found link https://files.pythonhosted.org/packages/5f/83/21a8fdb68f6211299f8154270d1e8dbac541f1fde15c15dde0c7cb46e143/teca-4.1.0.tar.gz (from https://pypi.org/simple/teca/), version: 4.1.0 2023-09-11T06:39:48,939 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/02/87/d3fb6e72ef7bbf27d7494c2bdb1b0ec9b345f9cf5bb981862166d7b33c2d/teca-5.0.0-py3.10-linux-x86_64.egg (from https://pypi.org/simple/teca/) 2023-09-11T06:39:48,940 Found link https://files.pythonhosted.org/packages/4b/f7/68ffe8d60a51859e31d5b5063a454354cd2a2c79440d82f7de6255a42849/teca-5.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 5.0.0 2023-09-11T06:39:48,941 Fetching project page and analyzing links: https://www.piwheels.org/simple/teca/ 2023-09-11T06:39:48,942 Getting page https://www.piwheels.org/simple/teca/ 2023-09-11T06:39:48,943 Found index url https://www.piwheels.org/simple/ 2023-09-11T06:39:49,210 Fetched page https://www.piwheels.org/simple/teca/ as text/html 2023-09-11T06:39:49,212 Skipping link: not a file: https://www.piwheels.org/simple/teca/ 2023-09-11T06:39:49,213 Skipping link: not a file: https://pypi.org/simple/teca/ 2023-09-11T06:39:49,240 Given no hashes to check 1 links for project 'teca': discarding no candidates 2023-09-11T06:39:49,267 Collecting teca==2.2.1 2023-09-11T06:39:49,270 Created temporary directory: /tmp/pip-unpack-0rp2gdnf 2023-09-11T06:39:50,388 Downloading teca-2.2.1.tar.gz (22.6 MB) 2023-09-11T06:39:57,227 Added teca==2.2.1 from https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-i_43qm9y' 2023-09-11T06:39:57,229 Running setup.py (path:/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/setup.py) egg_info for package teca 2023-09-11T06:39:57,230 Created temporary directory: /tmp/pip-pip-egg-info-6juza_mt 2023-09-11T06:39:57,230 Preparing metadata (setup.py): started 2023-09-11T06:39:57,231 Running command python setup.py egg_info 2023-09-11T06:39:58,257 running egg_info 2023-09-11T06:39:58,258 creating /tmp/pip-pip-egg-info-6juza_mt/teca.egg-info 2023-09-11T06:39:58,282 writing /tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/PKG-INFO 2023-09-11T06:39:58,285 writing dependency_links to /tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/dependency_links.txt 2023-09-11T06:39:58,287 writing requirements to /tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/requires.txt 2023-09-11T06:39:58,288 writing top-level names to /tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/top_level.txt 2023-09-11T06:39:58,289 writing manifest file '/tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/SOURCES.txt' 2023-09-11T06:39:58,338 reading manifest file '/tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/SOURCES.txt' 2023-09-11T06:39:58,340 reading manifest template 'MANIFEST.in' 2023-09-11T06:39:58,459 warning: no previously-included files matching '*.pdf' found anywhere in distribution 2023-09-11T06:39:58,461 warning: no previously-included files matching '*.sw?' found anywhere in distribution 2023-09-11T06:39:58,461 adding license file 'LICENSE.md' 2023-09-11T06:39:58,471 writing manifest file '/tmp/pip-pip-egg-info-6juza_mt/teca.egg-info/SOURCES.txt' 2023-09-11T06:39:58,582 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T06:39:58,586 Source in /tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c has version 2.2.1, which satisfies requirement teca==2.2.1 from https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz 2023-09-11T06:39:58,587 Removed teca==2.2.1 from https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-i_43qm9y' 2023-09-11T06:39:58,591 Created temporary directory: /tmp/pip-unpack-2li5ec55 2023-09-11T06:39:58,592 Created temporary directory: /tmp/pip-unpack-6vsyqiox 2023-09-11T06:39:58,597 Building wheels for collected packages: teca 2023-09-11T06:39:58,601 Created temporary directory: /tmp/pip-wheel-4eatyxsa 2023-09-11T06:39:58,602 Building wheel for teca (setup.py): started 2023-09-11T06:39:58,603 Destination directory: /tmp/pip-wheel-4eatyxsa 2023-09-11T06:39:58,604 Running command python setup.py bdist_wheel 2023-09-11T06:39:59,581 running bdist_wheel 2023-09-11T06:39:59,650 running build 2023-09-11T06:39:59,651 running build_ext 2023-09-11T06:39:59,980 -- The C compiler identification is GNU 12.2.0 2023-09-11T06:40:00,282 -- The CXX compiler identification is GNU 12.2.0 2023-09-11T06:40:00,613 -- The Fortran compiler identification is GNU 12.2.0 2023-09-11T06:40:00,724 -- Detecting C compiler ABI info 2023-09-11T06:40:01,115 -- Detecting C compiler ABI info - done 2023-09-11T06:40:01,156 -- Check for working C compiler: /usr/bin/cc - skipped 2023-09-11T06:40:01,158 -- Detecting C compile features 2023-09-11T06:40:01,161 -- Detecting C compile features - done 2023-09-11T06:40:01,179 -- Detecting CXX compiler ABI info 2023-09-11T06:40:01,621 -- Detecting CXX compiler ABI info - done 2023-09-11T06:40:01,674 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-09-11T06:40:01,676 -- Detecting CXX compile features 2023-09-11T06:40:01,679 -- Detecting CXX compile features - done 2023-09-11T06:40:01,698 -- Detecting Fortran compiler ABI info 2023-09-11T06:40:02,134 -- Detecting Fortran compiler ABI info - done 2023-09-11T06:40:02,179 -- Check for working Fortran compiler: /usr/bin/gfortran - skipped 2023-09-11T06:40:02,186 -- Configuring a Release build 2023-09-11T06:40:02,187 -- Check for c++ regex support 2023-09-11T06:40:11,558 -- Check for c++ regex support -- enabled 2023-09-11T06:40:12,335 -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") 2023-09-11T06:40:16,569 -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") 2023-09-11T06:40:21,094 -- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/libmpi_usempif08.so (found version "3.1") 2023-09-11T06:40:21,095 -- Found MPI: TRUE (found version "3.1") 2023-09-11T06:40:21,097 -- MPI features -- enabled 2023-09-11T06:40:21,120 -- Could NOT find NetCDF (missing: NETCDF_LIBRARIES NETCDF_INCLUDE_DIRS) 2023-09-11T06:40:21,120 CMake Error at CMakeLists.txt:112 (message): 2023-09-11T06:40:21,121 NetCDF features -- required but not found. set NETCDF_DIR to enable. 2023-09-11T06:40:21,122 -- Configuring incomplete, errors occurred! 2023-09-11T06:40:21,123 See also "/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/build/temp.linux-armv7l-cpython-311/CMakeFiles/CMakeOutput.log". 2023-09-11T06:40:21,140 ================================================================ 2023-09-11T06:40:21,141 An error ocured building TECA. This is usually a symptom 2023-09-11T06:40:21,141 of a missing dependency. The error messages above will indicate 2023-09-11T06:40:21,142 which package is missing. Install the development package for 2023-09-11T06:40:21,142 the missing dependency using your system's package manager 2023-09-11T06:40:21,143 ================================================================ 2023-09-11T06:40:21,144 Traceback (most recent call last): 2023-09-11T06:40:21,144 File "", line 2, in 2023-09-11T06:40:21,144 File "", line 34, in 2023-09-11T06:40:21,145 File "/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/setup.py", line 97, in 2023-09-11T06:40:21,145 setup(name='teca', 2023-09-11T06:40:21,146 File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup 2023-09-11T06:40:21,146 return distutils.core.setup(**attrs) 2023-09-11T06:40:21,147 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T06:40:21,147 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup 2023-09-11T06:40:21,148 return run_commands(dist) 2023-09-11T06:40:21,149 ^^^^^^^^^^^^^^^^^^ 2023-09-11T06:40:21,149 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-09-11T06:40:21,150 dist.run_commands() 2023-09-11T06:40:21,150 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-09-11T06:40:21,151 self.run_command(cmd) 2023-09-11T06:40:21,151 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-11T06:40:21,152 super().run_command(command) 2023-09-11T06:40:21,153 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-11T06:40:21,153 cmd_obj.run() 2023-09-11T06:40:21,154 File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 325, in run 2023-09-11T06:40:21,155 self.run_command("build") 2023-09-11T06:40:21,156 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-11T06:40:21,157 self.distribution.run_command(command) 2023-09-11T06:40:21,158 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-11T06:40:21,159 super().run_command(command) 2023-09-11T06:40:21,160 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-11T06:40:21,161 cmd_obj.run() 2023-09-11T06:40:21,161 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run 2023-09-11T06:40:21,162 self.run_command(cmd_name) 2023-09-11T06:40:21,163 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-09-11T06:40:21,164 self.distribution.run_command(command) 2023-09-11T06:40:21,165 File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command 2023-09-11T06:40:21,166 super().run_command(command) 2023-09-11T06:40:21,167 File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-09-11T06:40:21,168 cmd_obj.run() 2023-09-11T06:40:21,168 File "/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/setup.py", line 34, in run 2023-09-11T06:40:21,169 self.build_extension(ext) 2023-09-11T06:40:21,170 File "/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/setup.py", line 72, in build_extension 2023-09-11T06:40:21,171 subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp) 2023-09-11T06:40:21,171 File "/usr/lib/python3.11/subprocess.py", line 413, in check_call 2023-09-11T06:40:21,172 raise CalledProcessError(retcode, cmd) 2023-09-11T06:40:21,173 subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c', '-DCMAKE_INSTALL_PREFIX=/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/build/lib.linux-armv7l-cpython-311', '-DLIB_PREFIX=.', '-DREQUIRE_PYTHON=TRUE', '-DREQUIRE_MPI=TRUE', '-DREQUIRE_UDUNITS=TRUE', '-DREQUIRE_NETCDF=TRUE', '-DREQUIRE_BOOST=TRUE', '-DTECA_PYTHON_VERSION=3', '-DTECA_VERSION=2.2.1(PyPi)', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1. 2023-09-11T06:40:21,265 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-11T06:40:21,278 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-11T06:40:21,278 exec(compile('"'"''"'"''"'"' 2023-09-11T06:40:21,278 # This is -- a caller that pip uses to run setup.py 2023-09-11T06:40:21,278 # 2023-09-11T06:40:21,278 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-11T06:40:21,278 # import from `distutils.core` to work with newer packaging standards. 2023-09-11T06:40:21,278 # - It provides a clear error message when setuptools is not installed. 2023-09-11T06:40:21,278 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-11T06:40:21,278 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-11T06:40:21,278 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-11T06:40:21,278 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-11T06:40:21,278 import os, sys, tokenize 2023-09-11T06:40:21,278 2023-09-11T06:40:21,278 try: 2023-09-11T06:40:21,278 import setuptools 2023-09-11T06:40:21,278 except ImportError as error: 2023-09-11T06:40:21,278 print( 2023-09-11T06:40:21,278 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-11T06:40:21,278 "the build environment.", 2023-09-11T06:40:21,278 file=sys.stderr, 2023-09-11T06:40:21,278 ) 2023-09-11T06:40:21,278 sys.exit(1) 2023-09-11T06:40:21,278 2023-09-11T06:40:21,278 __file__ = %r 2023-09-11T06:40:21,278 sys.argv[0] = __file__ 2023-09-11T06:40:21,278 2023-09-11T06:40:21,278 if os.path.exists(__file__): 2023-09-11T06:40:21,278 filename = __file__ 2023-09-11T06:40:21,278 with tokenize.open(__file__) as f: 2023-09-11T06:40:21,278 setup_py_code = f.read() 2023-09-11T06:40:21,278 else: 2023-09-11T06:40:21,278 filename = "" 2023-09-11T06:40:21,278 setup_py_code = "from setuptools import setup; setup()" 2023-09-11T06:40:21,278 2023-09-11T06:40:21,278 exec(compile(setup_py_code, filename, "exec")) 2023-09-11T06:40:21,278 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-4eatyxsa[/] 2023-09-11T06:40:21,279 [bold magenta]cwd[/]: /tmp/pip-wheel-hyjvpn7i/teca_f46902be48b246299df81960a3d4392c/ 2023-09-11T06:40:21,280 Building wheel for teca (setup.py): finished with status 'error' 2023-09-11T06:40:21,281 ERROR: Failed building wheel for teca 2023-09-11T06:40:21,282 Running setup.py clean for teca 2023-09-11T06:40:21,284 Running command python setup.py clean 2023-09-11T06:40:22,286 running clean 2023-09-11T06:40:22,332 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-11T06:40:22,347 'build/lib.linux-armv7l-cpython-311' does not exist -- can't clean it 2023-09-11T06:40:22,348 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-11T06:40:22,348 'build/scripts-3.11' does not exist -- can't clean it 2023-09-11T06:40:22,349 removing 'build' 2023-09-11T06:40:22,458 Failed to build teca 2023-09-11T06:40:22,460 ERROR: Failed to build one or more wheels 2023-09-11T06:40:22,461 Exception information: 2023-09-11T06:40:22,461 Traceback (most recent call last): 2023-09-11T06:40:22,461 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-11T06:40:22,461 status = run_func(*args) 2023-09-11T06:40:22,461 ^^^^^^^^^^^^^^^ 2023-09-11T06:40:22,461 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-11T06:40:22,461 return func(self, options, args) 2023-09-11T06:40:22,461 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T06:40:22,461 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-11T06:40:22,461 raise CommandError("Failed to build one or more wheels") 2023-09-11T06:40:22,461 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-11T06:40:22,464 Removed build tracker: '/tmp/pip-build-tracker-i_43qm9y'