2023-09-11T06:40:35,549 Created temporary directory: /tmp/pip-build-tracker-bhisc36f 2023-09-11T06:40:35,550 Initialized build tracking at /tmp/pip-build-tracker-bhisc36f 2023-09-11T06:40:35,551 Created build tracker: /tmp/pip-build-tracker-bhisc36f 2023-09-11T06:40:35,551 Entered build tracker: /tmp/pip-build-tracker-bhisc36f 2023-09-11T06:40:35,552 Created temporary directory: /tmp/pip-wheel-j4vh2rau 2023-09-11T06:40:35,555 Created temporary directory: /tmp/pip-ephem-wheel-cache-2iqy5z_3 2023-09-11T06:40:35,577 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T06:40:35,581 2 location(s) to search for versions of compare-reads: 2023-09-11T06:40:35,581 * https://pypi.org/simple/compare-reads/ 2023-09-11T06:40:35,581 * https://www.piwheels.org/simple/compare-reads/ 2023-09-11T06:40:35,581 Fetching project page and analyzing links: https://pypi.org/simple/compare-reads/ 2023-09-11T06:40:35,582 Getting page https://pypi.org/simple/compare-reads/ 2023-09-11T06:40:35,584 Found index url https://pypi.org/simple/ 2023-09-11T06:40:35,835 Fetched page https://pypi.org/simple/compare-reads/ as application/vnd.pypi.simple.v1+json 2023-09-11T06:40:35,838 Found link https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.0 2023-09-11T06:40:35,840 Found link https://files.pythonhosted.org/packages/72/64/1366b20e77d55b4277a02b3015b72c81a40705128311898f17bc1d2cd261/compare-reads-0.0.1.tar.gz (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*), version: 0.0.1 2023-09-11T06:40:35,841 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/6d/ed/427b56f3d3ec34bb0bcd08bc20a10c7357cb54520af28d2b48c69c6aa27e/compare_reads-0.0.1-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,841 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/80/39/821df71efdefedde84e5b4e864ffc2f37a5397a4efebd6d4c95a24357a9e/compare_reads-0.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,842 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/a7/e3/afbcba872088f01073254d7d2b1e0ce96816353e7a5693f634a586d7b43e/compare_reads-0.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,842 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/e6/e1/9ecdb42750123ead9f7b5856daeccfbe8c6dd076fc592dbfb1bfa27e210b/compare_reads-0.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,843 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/8b/49/9bb089dfa181c376f5ed74dd8597d576fb5574668cacef326682bbf909a5/compare_reads-0.0.1-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,844 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/ba/4e/b4d0336569d7898aed9eb879f211f69661fb7347876a9a0b69f9c39e5aff/compare_reads-0.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,844 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/db/5e/e05f247c44e89224cb4aaf28a6b62b0ba06fc0e07544a0822d4fc2eafa96/compare_reads-0.0.1-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,845 Skipping link: No binaries permitted for compare-reads: https://files.pythonhosted.org/packages/54/a9/dea8942b4ac2ef17c6c7afdce1d28bb549682e29255618c2d612649f8f76/compare_reads-0.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:35,846 Fetching project page and analyzing links: https://www.piwheels.org/simple/compare-reads/ 2023-09-11T06:40:35,846 Getting page https://www.piwheels.org/simple/compare-reads/ 2023-09-11T06:40:35,847 Found index url https://www.piwheels.org/simple/ 2023-09-11T06:40:37,558 Fetched page https://www.piwheels.org/simple/compare-reads/ as text/html 2023-09-11T06:40:37,568 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv6l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,569 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp34-cp34m-linux_armv7l.whl#sha256=890999176564f850dfccb60c65ecfd0ee855d1e8714aebcb71d231752b6b344b (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,569 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv6l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,570 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp35-cp35m-linux_armv7l.whl#sha256=dfdc09dc202249b6ef89b3b7b26ccb1dc12a3a5b4817feb9277062168d2ac3b7 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,571 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv6l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,572 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp37-cp37m-linux_armv7l.whl#sha256=072a516562b024c76fafac72cac908465a4e81d9b7ed8b06c0c6fb8157944c8d (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,573 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv6l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,574 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.0-cp39-cp39-linux_armv7l.whl#sha256=c339bf70f7618bbdb367cba8a19760a7489fbddce98d940870cdcd93a0c747da (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,574 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv6l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,575 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp34-cp34m-linux_armv7l.whl#sha256=f88b17bf210558a20d2b50d3c9020f1846c970b49699601e2f2959ad0a05ca07 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,576 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv6l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,577 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp35-cp35m-linux_armv7l.whl#sha256=a02971028330da741ca1400412ec767f2c0932b6e9ceea073f466f62c7d0aa40 (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,578 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv6l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,578 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp37-cp37m-linux_armv7l.whl#sha256=3ebdaa5eabbde951e3786336da6c19fb0a8e9188fa92ed51f5a8178b942de61f (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,579 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,580 Skipping link: No binaries permitted for compare-reads: https://www.piwheels.org/simple/compare-reads/compare_reads-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=d98030ce2a08e81dbb08a24cc7a5fb7269dc1ebf4197b923fcc42700ffc03fcb (from https://www.piwheels.org/simple/compare-reads/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*) 2023-09-11T06:40:37,580 Skipping link: not a file: https://www.piwheels.org/simple/compare-reads/ 2023-09-11T06:40:37,581 Skipping link: not a file: https://pypi.org/simple/compare-reads/ 2023-09-11T06:40:37,614 Given no hashes to check 1 links for project 'compare-reads': discarding no candidates 2023-09-11T06:40:37,646 Collecting compare-reads==0.0.0 2023-09-11T06:40:37,650 Created temporary directory: /tmp/pip-unpack-unjrh1pf 2023-09-11T06:40:37,877 Downloading compare-reads-0.0.0.tar.gz (46 kB) 2023-09-11T06:40:37,993 Added compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-bhisc36f' 2023-09-11T06:40:37,995 Running setup.py (path:/tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/setup.py) egg_info for package compare-reads 2023-09-11T06:40:37,996 Created temporary directory: /tmp/pip-pip-egg-info-riuecuys 2023-09-11T06:40:37,996 Preparing metadata (setup.py): started 2023-09-11T06:40:37,997 Running command python setup.py egg_info 2023-09-11T06:40:38,717 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-11T06:40:38,717 !! 2023-09-11T06:40:38,718 ******************************************************************************** 2023-09-11T06:40:38,719 Requirements should be satisfied by a PEP 517 installer. 2023-09-11T06:40:38,720 If you are using pip, you can try `pip install --use-pep517`. 2023-09-11T06:40:38,720 ******************************************************************************** 2023-09-11T06:40:38,721 !! 2023-09-11T06:40:38,722 dist.fetch_build_eggs(dist.setup_requires) 2023-09-11T06:40:44,207 running egg_info 2023-09-11T06:40:44,208 creating /tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info 2023-09-11T06:40:44,233 writing /tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/PKG-INFO 2023-09-11T06:40:44,237 writing dependency_links to /tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/dependency_links.txt 2023-09-11T06:40:44,239 writing requirements to /tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/requires.txt 2023-09-11T06:40:44,240 writing top-level names to /tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/top_level.txt 2023-09-11T06:40:44,241 writing manifest file '/tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/SOURCES.txt' 2023-09-11T06:40:44,319 reading manifest file '/tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/SOURCES.txt' 2023-09-11T06:40:44,321 reading manifest template 'MANIFEST.in' 2023-09-11T06:40:44,329 warning: no files found matching 'appveyor.yml' 2023-09-11T06:40:44,330 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-09-11T06:40:44,331 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-09-11T06:40:44,331 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-09-11T06:40:44,332 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-09-11T06:40:44,333 adding license file 'LICENSE' 2023-09-11T06:40:44,333 adding license file 'AUTHORS.rst' 2023-09-11T06:40:44,335 writing manifest file '/tmp/pip-pip-egg-info-riuecuys/compare_reads.egg-info/SOURCES.txt' 2023-09-11T06:40:44,446 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T06:40:44,450 Source in /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e has version 0.0.0, which satisfies requirement compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz 2023-09-11T06:40:44,451 Removed compare-reads==0.0.0 from https://files.pythonhosted.org/packages/45/ba/ccbe06383c0d8974562aa87510b776985307b350d42d3d074361c79a7af1/compare-reads-0.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-bhisc36f' 2023-09-11T06:40:44,459 Created temporary directory: /tmp/pip-unpack-1hw20n_q 2023-09-11T06:40:44,460 Created temporary directory: /tmp/pip-unpack-sb4h7bfr 2023-09-11T06:40:44,464 Building wheels for collected packages: compare-reads 2023-09-11T06:40:44,469 Created temporary directory: /tmp/pip-wheel-j7o32_xv 2023-09-11T06:40:44,469 Building wheel for compare-reads (setup.py): started 2023-09-11T06:40:44,471 Destination directory: /tmp/pip-wheel-j7o32_xv 2023-09-11T06:40:44,471 Running command python setup.py bdist_wheel 2023-09-11T06:40:45,196 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-09-11T06:40:45,196 !! 2023-09-11T06:40:45,198 ******************************************************************************** 2023-09-11T06:40:45,198 Requirements should be satisfied by a PEP 517 installer. 2023-09-11T06:40:45,199 If you are using pip, you can try `pip install --use-pep517`. 2023-09-11T06:40:45,199 ******************************************************************************** 2023-09-11T06:40:45,201 !! 2023-09-11T06:40:45,201 dist.fetch_build_eggs(dist.setup_requires) 2023-09-11T06:40:45,703 running bdist_wheel 2023-09-11T06:40:45,777 running build 2023-09-11T06:40:45,777 running build_py 2023-09-11T06:40:45,805 creating build 2023-09-11T06:40:45,805 creating build/lib.linux-armv7l-cpython-311 2023-09-11T06:40:45,806 creating build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,807 copying src/compare_reads/__init__.py -> build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,809 running egg_info 2023-09-11T06:40:45,859 writing src/compare_reads.egg-info/PKG-INFO 2023-09-11T06:40:45,862 writing dependency_links to src/compare_reads.egg-info/dependency_links.txt 2023-09-11T06:40:45,864 writing requirements to src/compare_reads.egg-info/requires.txt 2023-09-11T06:40:45,865 writing top-level names to src/compare_reads.egg-info/top_level.txt 2023-09-11T06:40:45,893 reading manifest file 'src/compare_reads.egg-info/SOURCES.txt' 2023-09-11T06:40:45,895 reading manifest template 'MANIFEST.in' 2023-09-11T06:40:45,900 warning: no files found matching 'appveyor.yml' 2023-09-11T06:40:45,901 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-09-11T06:40:45,902 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-09-11T06:40:45,903 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-09-11T06:40:45,904 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-09-11T06:40:45,904 adding license file 'LICENSE' 2023-09-11T06:40:45,905 adding license file 'AUTHORS.rst' 2023-09-11T06:40:45,907 writing manifest file 'src/compare_reads.egg-info/SOURCES.txt' 2023-09-11T06:40:45,910 copying src/compare_reads/_compare_reads.c -> build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,916 copying src/compare_reads/_compare_reads.pxd -> build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,918 copying src/compare_reads/_compare_reads.pyx -> build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,920 copying src/compare_reads/strnum_cmp.c -> build/lib.linux-armv7l-cpython-311/compare_reads 2023-09-11T06:40:45,922 running build_ext 2023-09-11T06:40:47,582 Compiling src/compare_reads/_compare_reads.pyx because it changed. 2023-09-11T06:40:47,583 [1/1] Cythonizing src/compare_reads/_compare_reads.pyx 2023-09-11T06:40:48,628 /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/src/compare_reads/_compare_reads.pxd 2023-09-11T06:40:48,629 tree = Parsing.p_module(s, pxd, full_module_name) 2023-09-11T06:40:51,725 building 'compare_reads._compare_reads' extension 2023-09-11T06:40:51,726 creating build/temp.linux-armv7l-cpython-311 2023-09-11T06:40:51,726 creating build/temp.linux-armv7l-cpython-311/src 2023-09-11T06:40:51,727 creating build/temp.linux-armv7l-cpython-311/src/compare_reads 2023-09-11T06:40:51,728 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/compare_reads -I/usr/include/python3.11 -I/tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam -I/tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib -I/tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/samtools -c src/compare_reads/_compare_reads.c -o build/temp.linux-armv7l-cpython-311/src/compare_reads/_compare_reads.o 2023-09-11T06:40:52,580 In file included from /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/pysam_stream.h:4, 2023-09-11T06:40:52,581 from src/compare_reads/_compare_reads.c:1214: 2023-09-11T06:40:52,582 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:185:19: warning: ‘kseq_read’ defined but not used [-Wunused-function] 2023-09-11T06:40:52,582 185 | SCOPE int kseq_read(kseq_t *seq) \ 2023-09-11T06:40:52,583 | ^~~~~~~~~ 2023-09-11T06:40:52,583 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:238:9: note: in expansion of macro ‘__KSEQ_READ’ 2023-09-11T06:40:52,584 238 | __KSEQ_READ(SCOPE) 2023-09-11T06:40:52,584 | ^~~~~~~~~~~ 2023-09-11T06:40:52,585 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2023-09-11T06:40:52,585 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2023-09-11T06:40:52,586 | ^~~~~~~~~~ 2023-09-11T06:40:52,587 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2023-09-11T06:40:52,588 9 | KSEQ_INIT(BGZF *, bgzf_read) 2023-09-11T06:40:52,588 | ^~~~~~~~~ 2023-09-11T06:40:52,589 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:171:20: warning: ‘kseq_destroy’ defined but not used [-Wunused-function] 2023-09-11T06:40:52,590 171 | SCOPE void kseq_destroy(kseq_t *ks) \ 2023-09-11T06:40:52,590 | ^~~~~~~~~~~~ 2023-09-11T06:40:52,591 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:237:9: note: in expansion of macro ‘__KSEQ_BASIC’ 2023-09-11T06:40:52,591 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2023-09-11T06:40:52,592 | ^~~~~~~~~~~~ 2023-09-11T06:40:52,593 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2023-09-11T06:40:52,593 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2023-09-11T06:40:52,594 | ^~~~~~~~~~ 2023-09-11T06:40:52,594 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2023-09-11T06:40:52,595 9 | KSEQ_INIT(BGZF *, bgzf_read) 2023-09-11T06:40:52,595 | ^~~~~~~~~ 2023-09-11T06:40:52,596 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:165:23: warning: ‘kseq_init’ defined but not used [-Wunused-function] 2023-09-11T06:40:52,597 165 | SCOPE kseq_t *kseq_init(type_t fd) \ 2023-09-11T06:40:52,597 | ^~~~~~~~~ 2023-09-11T06:40:52,598 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:237:9: note: in expansion of macro ‘__KSEQ_BASIC’ 2023-09-11T06:40:52,598 237 | __KSEQ_BASIC(SCOPE, type_t) \ 2023-09-11T06:40:52,599 | ^~~~~~~~~~~~ 2023-09-11T06:40:52,600 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/include/htslib/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’ 2023-09-11T06:40:52,600 240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read) 2023-09-11T06:40:52,601 | ^~~~~~~~~~ 2023-09-11T06:40:52,601 /tmp/pip-wheel-j4vh2rau/compare-reads_99a110ead12040559b5781186de1cc7e/.eggs/pysam-0.21.0-py3.11-linux-armv7l.egg/pysam/pysam_stream.h:9:1: note: in expansion of macro ‘KSEQ_INIT’ 2023-09-11T06:40:52,602 9 | KSEQ_INIT(BGZF *, bgzf_read) 2023-09-11T06:40:52,603 | ^~~~~~~~~ 2023-09-11T06:40:55,681 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/compare_reads/_compare_reads.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/compare_reads/_compare_reads.cpython-311-arm-linux-gnueabihf.so 2023-09-11T06:40:55,816 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-11T06:40:55,817 !! 2023-09-11T06:40:55,818 ******************************************************************************** 2023-09-11T06:40:55,818 Please avoid running ``setup.py`` directly. 2023-09-11T06:40:55,819 Instead, use pypa/build, pypa/installer or other 2023-09-11T06:40:55,820 standards-based tools. 2023-09-11T06:40:55,821 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-11T06:40:55,821 ******************************************************************************** 2023-09-11T06:40:55,822 !! 2023-09-11T06:40:55,823 self.initialize_options() 2023-09-11T06:40:55,843 installing to build/bdist.linux-armv7l/wheel 2023-09-11T06:40:55,843 running install 2023-09-11T06:40:55,867 running install_lib 2023-09-11T06:40:55,894 creating build/bdist.linux-armv7l 2023-09-11T06:40:55,894 creating build/bdist.linux-armv7l/wheel 2023-09-11T06:40:55,896 creating build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,897 copying build/lib.linux-armv7l-cpython-311/compare_reads/__init__.py -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,899 copying build/lib.linux-armv7l-cpython-311/compare_reads/_compare_reads.pyx -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,901 copying build/lib.linux-armv7l-cpython-311/compare_reads/_compare_reads.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,907 copying build/lib.linux-armv7l-cpython-311/compare_reads/strnum_cmp.c -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,909 copying build/lib.linux-armv7l-cpython-311/compare_reads/_compare_reads.pxd -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,912 copying build/lib.linux-armv7l-cpython-311/compare_reads/_compare_reads.c -> build/bdist.linux-armv7l/wheel/compare_reads 2023-09-11T06:40:55,920 running install_egg_info 2023-09-11T06:40:55,948 Copying src/compare_reads.egg-info to build/bdist.linux-armv7l/wheel/compare_reads-0.0.0-py3.11.egg-info 2023-09-11T06:40:55,961 running install_scripts 2023-09-11T06:40:56,017 creating build/bdist.linux-armv7l/wheel/compare_reads-0.0.0.dist-info/WHEEL 2023-09-11T06:40:56,020 creating '/tmp/pip-wheel-j7o32_xv/compare_reads-0.0.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-11T06:40:56,023 adding 'compare_reads/__init__.py' 2023-09-11T06:40:56,041 adding 'compare_reads/_compare_reads.c' 2023-09-11T06:40:56,085 adding 'compare_reads/_compare_reads.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T06:40:56,089 adding 'compare_reads/_compare_reads.pxd' 2023-09-11T06:40:56,091 adding 'compare_reads/_compare_reads.pyx' 2023-09-11T06:40:56,092 adding 'compare_reads/strnum_cmp.c' 2023-09-11T06:40:56,095 adding 'compare_reads-0.0.0.dist-info/AUTHORS.rst' 2023-09-11T06:40:56,096 adding 'compare_reads-0.0.0.dist-info/LICENSE' 2023-09-11T06:40:56,098 adding 'compare_reads-0.0.0.dist-info/METADATA' 2023-09-11T06:40:56,100 adding 'compare_reads-0.0.0.dist-info/WHEEL' 2023-09-11T06:40:56,101 adding 'compare_reads-0.0.0.dist-info/top_level.txt' 2023-09-11T06:40:56,103 adding 'compare_reads-0.0.0.dist-info/RECORD' 2023-09-11T06:40:56,143 removing build/bdist.linux-armv7l/wheel 2023-09-11T06:40:56,503 Building wheel for compare-reads (setup.py): finished with status 'done' 2023-09-11T06:40:56,507 Created wheel for compare-reads: filename=compare_reads-0.0.0-cp311-cp311-linux_armv7l.whl size=126464 sha256=612622231d2bd37be389bdbdd3c75fee191f514fa8c4cea428bb6f67207adb4f 2023-09-11T06:40:56,509 Stored in directory: /tmp/pip-ephem-wheel-cache-2iqy5z_3/wheels/c0/8c/7d/ad231f128c543397082cfce729c7a0ff6bbe7be3314c46a502 2023-09-11T06:40:56,522 Successfully built compare-reads 2023-09-11T06:40:56,532 Removed build tracker: '/tmp/pip-build-tracker-bhisc36f'