2023-09-11T10:41:32,816 Created temporary directory: /tmp/pip-build-tracker-zxt1yxi9 2023-09-11T10:41:32,817 Initialized build tracking at /tmp/pip-build-tracker-zxt1yxi9 2023-09-11T10:41:32,818 Created build tracker: /tmp/pip-build-tracker-zxt1yxi9 2023-09-11T10:41:32,818 Entered build tracker: /tmp/pip-build-tracker-zxt1yxi9 2023-09-11T10:41:32,819 Created temporary directory: /tmp/pip-wheel-_ak4l2rn 2023-09-11T10:41:32,822 Created temporary directory: /tmp/pip-ephem-wheel-cache-78bxfi5o 2023-09-11T10:41:32,843 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T10:41:32,847 2 location(s) to search for versions of parmed: 2023-09-11T10:41:32,847 * https://pypi.org/simple/parmed/ 2023-09-11T10:41:32,847 * https://www.piwheels.org/simple/parmed/ 2023-09-11T10:41:32,848 Fetching project page and analyzing links: https://pypi.org/simple/parmed/ 2023-09-11T10:41:32,849 Getting page https://pypi.org/simple/parmed/ 2023-09-11T10:41:32,850 Found index url https://pypi.org/simple/ 2023-09-11T10:41:33,066 Fetched page https://pypi.org/simple/parmed/ as application/vnd.pypi.simple.v1+json 2023-09-11T10:41:33,070 Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz (from https://pypi.org/simple/parmed/), version: 2.1.10 2023-09-11T10:41:33,070 Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.0 2023-09-11T10:41:33,071 Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz (from https://pypi.org/simple/parmed/), version: 2.5.1 2023-09-11T10:41:33,071 Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.2 2023-09-11T10:41:33,072 Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz (from https://pypi.org/simple/parmed/), version: 2.7.3 2023-09-11T10:41:33,073 Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.0 2023-09-11T10:41:33,074 Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.1 2023-09-11T10:41:33,074 Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.0.3 2023-09-11T10:41:33,075 Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.1.0 2023-09-11T10:41:33,076 Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz (from https://pypi.org/simple/parmed/), version: 3.2.0 2023-09-11T10:41:33,077 Found link https://files.pythonhosted.org/packages/24/d1/dafba1bdb2f395de37efa51355e093843bb05e7a6dfb5373403ff9af2575/ParmEd-3.4.2.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.2 2023-09-11T10:41:33,077 Found link https://files.pythonhosted.org/packages/56/75/422fa404b42999d6346545b63542d8c1e30f1cc31e5fc884bb7c9a3995c8/ParmEd-3.4.3.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.3 2023-09-11T10:41:33,078 Found link https://files.pythonhosted.org/packages/74/f2/6f19ed34378c32ac1b5304f58bc6e6086e14a725af589c7b3fa35deaff07/ParmEd-3.4.4.tar.gz (from https://pypi.org/simple/parmed/), version: 3.4.4 2023-09-11T10:41:33,079 Found link https://files.pythonhosted.org/packages/6b/b6/040189f8ecb7fc2233d408b2c575ca0a1383c2fe6945c3462015c156bae5/ParmEd-4.0.0.tar.gz (from https://pypi.org/simple/parmed/), version: 4.0.0 2023-09-11T10:41:33,080 Found link https://files.pythonhosted.org/packages/dc/85/01007d38fe0945398c5e0ec7c7ce2d9cc433289bf05e32393c8e48e71cd4/ParmEd-4.1.0.tar.gz (from https://pypi.org/simple/parmed/) (requires-python:>=3.8), version: 4.1.0 2023-09-11T10:41:33,081 Fetching project page and analyzing links: https://www.piwheels.org/simple/parmed/ 2023-09-11T10:41:33,082 Getting page https://www.piwheels.org/simple/parmed/ 2023-09-11T10:41:33,083 Found index url https://www.piwheels.org/simple/ 2023-09-11T10:41:33,358 Fetched page https://www.piwheels.org/simple/parmed/ as text/html 2023-09-11T10:41:33,385 Skipping link: No binaries permitted for parmed: 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https://www.piwheels.org/simple/parmed/ParmEd-2.5.0-cp37-cp37m-linux_armv6l.whl#sha256=8cd5f3d69097b934b7ee66a577dbed5393d2a6998be794bc350fedb675960e64 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,443 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,444 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,444 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,445 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=e0534a25b390e9bc78d69f0efe9459ee04206f616c997a738a2fe47e4b32b697 (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,445 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv6l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,446 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp34-cp34m-linux_armv7l.whl#sha256=6b0dd3f2441783503ee0e302bc79578fafea899959437e1f410325427e4e27db (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,446 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,447 Skipping link: No binaries permitted for parmed: https://www.piwheels.org/simple/parmed/ParmEd-2.1.10-cp37-cp37m-linux_armv6l.whl#sha256=1854e07427c63691c54378dd17a4aa7885d24280196bc0b895bc45187d1161be (from https://www.piwheels.org/simple/parmed/) 2023-09-11T10:41:33,447 Skipping link: not a file: https://www.piwheels.org/simple/parmed/ 2023-09-11T10:41:33,448 Skipping link: not a file: https://pypi.org/simple/parmed/ 2023-09-11T10:41:33,468 Given no hashes to check 1 links for project 'parmed': discarding no candidates 2023-09-11T10:41:33,485 Collecting parmed==3.2.0 2023-09-11T10:41:33,488 Created temporary directory: /tmp/pip-unpack-u7ewteo_ 2023-09-11T10:41:33,953 Downloading ParmEd-3.2.0.tar.gz (2.2 MB) 2023-09-11T10:41:35,661 Added parmed==3.2.0 from https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-zxt1yxi9' 2023-09-11T10:41:35,663 Running setup.py (path:/tmp/pip-wheel-_ak4l2rn/parmed_d1c43929ec644b56abecf1a4b55130eb/setup.py) egg_info for package parmed 2023-09-11T10:41:35,664 Created temporary directory: /tmp/pip-pip-egg-info-sx33gvcd 2023-09-11T10:41:35,664 Preparing metadata (setup.py): started 2023-09-11T10:41:35,665 Running command python setup.py egg_info 2023-09-11T10:41:36,704 running egg_info 2023-09-11T10:41:36,706 creating /tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info 2023-09-11T10:41:36,730 writing /tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/PKG-INFO 2023-09-11T10:41:36,732 writing dependency_links to /tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/dependency_links.txt 2023-09-11T10:41:36,734 writing entry points to /tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/entry_points.txt 2023-09-11T10:41:36,736 writing top-level names to /tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/top_level.txt 2023-09-11T10:41:36,737 writing manifest file '/tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/SOURCES.txt' 2023-09-11T10:41:36,806 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-11T10:41:36,830 reading manifest file '/tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/SOURCES.txt' 2023-09-11T10:41:36,831 reading manifest template 'MANIFEST.in' 2023-09-11T10:41:36,865 writing manifest file '/tmp/pip-pip-egg-info-sx33gvcd/ParmEd.egg-info/SOURCES.txt' 2023-09-11T10:41:36,974 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T10:41:36,977 Source in /tmp/pip-wheel-_ak4l2rn/parmed_d1c43929ec644b56abecf1a4b55130eb has version 3.2.0, which satisfies requirement parmed==3.2.0 from https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz 2023-09-11T10:41:36,978 Removed parmed==3.2.0 from https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-zxt1yxi9' 2023-09-11T10:41:36,982 Created temporary directory: /tmp/pip-unpack-n2_sc9ob 2023-09-11T10:41:36,983 Created temporary directory: /tmp/pip-unpack-7w7b3jhn 2023-09-11T10:41:36,985 Building wheels for collected packages: parmed 2023-09-11T10:41:36,988 Created temporary directory: /tmp/pip-wheel-5ncrsc1p 2023-09-11T10:41:36,989 Building wheel for parmed (setup.py): started 2023-09-11T10:41:36,990 Destination directory: /tmp/pip-wheel-5ncrsc1p 2023-09-11T10:41:36,991 Running command python setup.py bdist_wheel 2023-09-11T10:41:38,269 running bdist_wheel 2023-09-11T10:41:38,365 running build 2023-09-11T10:41:38,366 running build_py 2023-09-11T10:41:38,370 creating build 2023-09-11T10:41:38,371 creating build/lib.linux-armv7l-cpython-311 2023-09-11T10:41:38,372 creating build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,373 copying parmed/geometry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,375 copying parmed/structure.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,380 copying parmed/residue.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,382 copying parmed/_version.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,384 copying parmed/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,386 copying parmed/scripts.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,388 copying parmed/periodic_table.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,390 copying parmed/constants.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,392 copying parmed/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,393 copying parmed/vec3.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,395 copying parmed/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,398 copying parmed/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,402 copying parmed/symmetry.py -> build/lib.linux-armv7l-cpython-311/parmed 2023-09-11T10:41:38,405 creating build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,406 copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,409 copying parmed/amber/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,411 copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,415 copying parmed/amber/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,418 copying parmed/amber/offlib.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,420 copying parmed/amber/mask.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,423 copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,426 copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,429 copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,432 copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,435 copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,437 copying parmed/amber/readparm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber 2023-09-11T10:41:38,439 creating build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T10:41:38,440 copying parmed/modeller/residue.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T10:41:38,443 copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T10:41:38,445 copying parmed/modeller/standardtemplates.py -> build/lib.linux-armv7l-cpython-311/parmed/modeller 2023-09-11T10:41:38,447 creating build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,448 copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,449 copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,452 copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,454 copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,456 copying parmed/tinker/system.py -> build/lib.linux-armv7l-cpython-311/parmed/tinker 2023-09-11T10:41:38,459 creating build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,460 copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,462 copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,464 copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,466 copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,468 copying parmed/unit/quantity.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,471 copying parmed/unit/constants.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,472 copying parmed/unit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,474 copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,476 copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,477 copying parmed/unit/prefix.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,479 copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,482 copying parmed/unit/unit.py -> build/lib.linux-armv7l-cpython-311/parmed/unit 2023-09-11T10:41:38,485 creating build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,486 copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,488 copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,490 copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,492 copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,494 copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,496 copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-cpython-311/parmed/amber/mdin 2023-09-11T10:41:38,498 creating build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,499 copying parmed/charmm/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,501 copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,504 copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,506 copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,509 copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-cpython-311/parmed/charmm 2023-09-11T10:41:38,511 creating build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,512 creating build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T10:41:38,513 copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T10:41:38,515 copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T10:41:38,517 copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T10:41:38,519 copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx 2023-09-11T10:41:38,521 creating build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T10:41:38,522 copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T10:41:38,524 copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rosetta 2023-09-11T10:41:38,526 creating build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T10:41:38,527 copying parmed/rdkit/rdkit.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T10:41:38,529 copying parmed/rdkit/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/rdkit 2023-09-11T10:41:38,531 copying parmed/formats/psf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,533 copying parmed/formats/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,535 copying parmed/formats/pqr.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,537 copying parmed/formats/pdb.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,541 copying parmed/formats/mol2.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,544 copying parmed/formats/registry.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,546 copying parmed/formats/sdf.py -> build/lib.linux-armv7l-cpython-311/parmed/formats 2023-09-11T10:41:38,548 creating build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,549 creating build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,550 copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,552 copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,553 copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,556 copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,558 copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,560 copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,562 copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,563 copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,566 copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,568 copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,570 copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat 2023-09-11T10:41:38,572 creating build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,573 copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,576 copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,578 copying parmed/openmm/utils.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,580 copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,582 copying parmed/openmm/parameters.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,584 copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-cpython-311/parmed/openmm 2023-09-11T10:41:38,587 copying parmed/utils/timer.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,588 copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,591 copying parmed/utils/decorators.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,593 copying parmed/utils/six.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,595 copying parmed/utils/io.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,597 copying parmed/utils/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,599 copying parmed/utils/pairlist.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,601 copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-cpython-311/parmed/utils 2023-09-11T10:41:38,603 creating build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,604 copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,606 copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,609 copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,612 copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,614 copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-cpython-311/parmed/gromacs 2023-09-11T10:41:38,617 creating build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,617 copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,620 copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,621 copying parmed/tools/logos.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,624 copying parmed/tools/add1264.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,626 copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,628 copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,630 copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,632 copying parmed/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,634 copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,636 copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,638 copying parmed/tools/actions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,644 copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-cpython-311/parmed/tools 2023-09-11T10:41:38,646 creating build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T10:41:38,647 copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T10:41:38,649 copying parmed/namd/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/namd 2023-09-11T10:41:38,651 creating build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,652 copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,655 copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,657 copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,659 copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,661 copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,663 copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/gui 2023-09-11T10:41:38,665 creating build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T10:41:38,666 copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T10:41:38,668 copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T10:41:38,670 copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-cpython-311/parmed/tools/simulations 2023-09-11T10:41:38,675 creating build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-11T10:41:38,676 copying parmed/modeller/data/standard_residues.lib -> build/lib.linux-armv7l-cpython-311/parmed/modeller/data 2023-09-11T10:41:38,690 UPDATING build/lib.linux-armv7l-cpython-311/parmed/_version.py 2023-09-11T10:41:38,691 set build/lib.linux-armv7l-cpython-311/parmed/_version.py to '3.2.0' 2023-09-11T10:41:38,691 running build_ext 2023-09-11T10:41:39,197 building 'parmed.amber._rdparm' extension 2023-09-11T10:41:39,198 creating build/temp.linux-armv7l-cpython-311 2023-09-11T10:41:39,199 creating build/temp.linux-armv7l-cpython-311/src 2023-09-11T10:41:39,199 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-_ak4l2rn/parmed_d1c43929ec644b56abecf1a4b55130eb/src -I/usr/include/python3.11 -c src/_rdparm.cpp -o build/temp.linux-armv7l-cpython-311/src/_rdparm.o 2023-09-11T10:41:44,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-_ak4l2rn/parmed_d1c43929ec644b56abecf1a4b55130eb/src -I/usr/include/python3.11 -c src/readparm.cpp -o build/temp.linux-armv7l-cpython-311/src/readparm.o 2023-09-11T10:41:48,001 In file included from /usr/include/c++/12/vector:70, 2023-09-11T10:41:48,002 from src/readparm.h:8, 2023-09-11T10:41:48,002 from src/readparm.cpp:10: 2023-09-11T10:41:48,003 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator]’: 2023-09-11T10:41:48,004 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-09-11T10:41:48,004 439 | vector<_Tp, _Alloc>:: 2023-09-11T10:41:48,005 | ^~~~~~~~~~~~~~~~~~~ 2023-09-11T10:41:49,086 src/readparm.cpp: In function ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’: 2023-09-11T10:41:49,087 src/readparm.cpp:143:28: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation] 2023-09-11T10:41:49,088 143 | strncpy(d.c, word.c_str(), MAX_HOLLERITH_SIZE); 2023-09-11T10:41:49,088 | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-09-11T10:41:49,214 In file included from /usr/include/c++/12/vector:64: 2023-09-11T10:41:49,214 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T10:41:49,215 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:128:48: 2023-09-11T10:41:49,216 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:41:49,217 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:41:49,218 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:41:49,218 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T10:41:49,219 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:135:48: 2023-09-11T10:41:49,219 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:41:49,220 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:41:49,220 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:41:49,221 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = ParmData; _Alloc = std::allocator]’, 2023-09-11T10:41:49,221 inlined from ‘ExitStatus readparm(const std::string&, std::vector >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:144:48: 2023-09-11T10:41:49,222 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-09-11T10:41:49,222 1287 | _M_realloc_insert(end(), __x); 2023-09-11T10:41:49,223 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-09-11T10:41:50,967 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/_rdparm.o build/temp.linux-armv7l-cpython-311/src/readparm.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so 2023-09-11T10:41:51,262 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-09-11T10:41:51,262 !! 2023-09-11T10:41:51,264 ******************************************************************************** 2023-09-11T10:41:51,264 Please avoid running ``setup.py`` directly. 2023-09-11T10:41:51,265 Instead, use pypa/build, pypa/installer or other 2023-09-11T10:41:51,265 standards-based tools. 2023-09-11T10:41:51,266 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-09-11T10:41:51,267 ******************************************************************************** 2023-09-11T10:41:51,268 !! 2023-09-11T10:41:51,269 self.initialize_options() 2023-09-11T10:41:51,290 installing to build/bdist.linux-armv7l/wheel 2023-09-11T10:41:51,290 running install 2023-09-11T10:41:51,314 running install_lib 2023-09-11T10:41:51,338 creating build/bdist.linux-armv7l 2023-09-11T10:41:51,339 creating build/bdist.linux-armv7l/wheel 2023-09-11T10:41:51,341 creating build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,342 copying build/lib.linux-armv7l-cpython-311/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,344 creating build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,345 copying build/lib.linux-armv7l-cpython-311/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,348 copying build/lib.linux-armv7l-cpython-311/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,349 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,352 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,355 copying build/lib.linux-armv7l-cpython-311/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,357 copying build/lib.linux-armv7l-cpython-311/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,360 creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T10:41:51,361 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T10:41:51,363 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T10:41:51,365 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T10:41:51,367 copying build/lib.linux-armv7l-cpython-311/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx 2023-09-11T10:41:51,369 copying build/lib.linux-armv7l-cpython-311/parmed/formats/sdf.py -> build/bdist.linux-armv7l/wheel/parmed/formats 2023-09-11T10:41:51,371 copying build/lib.linux-armv7l-cpython-311/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,375 copying build/lib.linux-armv7l-cpython-311/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,378 creating build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T10:41:51,379 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T10:41:51,381 copying build/lib.linux-armv7l-cpython-311/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta 2023-09-11T10:41:51,383 creating build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,384 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,386 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,389 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,391 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,392 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,395 copying build/lib.linux-armv7l-cpython-311/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm 2023-09-11T10:41:51,398 creating build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,399 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,401 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,404 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,405 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,409 copying build/lib.linux-armv7l-cpython-311/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm 2023-09-11T10:41:51,411 copying build/lib.linux-armv7l-cpython-311/parmed/_version.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,412 copying build/lib.linux-armv7l-cpython-311/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,415 copying build/lib.linux-armv7l-cpython-311/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,417 copying build/lib.linux-armv7l-cpython-311/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,420 creating build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,421 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,435 copying build/lib.linux-armv7l-cpython-311/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,439 creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,440 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,442 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,444 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,446 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,448 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,450 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin 2023-09-11T10:41:51,451 copying build/lib.linux-armv7l-cpython-311/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,453 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,458 copying build/lib.linux-armv7l-cpython-311/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,461 copying build/lib.linux-armv7l-cpython-311/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,463 copying build/lib.linux-armv7l-cpython-311/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,466 copying build/lib.linux-armv7l-cpython-311/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,469 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,471 copying build/lib.linux-armv7l-cpython-311/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,475 copying build/lib.linux-armv7l-cpython-311/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,478 copying build/lib.linux-armv7l-cpython-311/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,480 copying build/lib.linux-armv7l-cpython-311/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber 2023-09-11T10:41:51,483 creating build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,484 copying build/lib.linux-armv7l-cpython-311/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,486 copying build/lib.linux-armv7l-cpython-311/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,488 copying build/lib.linux-armv7l-cpython-311/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,490 copying build/lib.linux-armv7l-cpython-311/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,493 copying build/lib.linux-armv7l-cpython-311/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,495 creating build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,496 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,500 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,502 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,504 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,506 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,508 copying build/lib.linux-armv7l-cpython-311/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui 2023-09-11T10:41:51,510 creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T10:41:51,510 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T10:41:51,513 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T10:41:51,514 copying build/lib.linux-armv7l-cpython-311/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations 2023-09-11T10:41:51,518 copying build/lib.linux-armv7l-cpython-311/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,520 copying build/lib.linux-armv7l-cpython-311/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,522 copying build/lib.linux-armv7l-cpython-311/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,524 copying build/lib.linux-armv7l-cpython-311/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,526 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,529 copying build/lib.linux-armv7l-cpython-311/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,534 copying build/lib.linux-armv7l-cpython-311/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools 2023-09-11T10:41:51,536 copying build/lib.linux-armv7l-cpython-311/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,538 copying build/lib.linux-armv7l-cpython-311/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,540 copying build/lib.linux-armv7l-cpython-311/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,542 copying build/lib.linux-armv7l-cpython-311/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,545 creating build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T10:41:51,546 copying build/lib.linux-armv7l-cpython-311/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T10:41:51,548 copying build/lib.linux-armv7l-cpython-311/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd 2023-09-11T10:41:51,549 copying build/lib.linux-armv7l-cpython-311/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,556 copying build/lib.linux-armv7l-cpython-311/parmed/symmetry.py -> build/bdist.linux-armv7l/wheel/parmed 2023-09-11T10:41:51,558 creating build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T10:41:51,559 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/rdkit.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T10:41:51,561 copying build/lib.linux-armv7l-cpython-311/parmed/rdkit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rdkit 2023-09-11T10:41:51,563 creating build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,564 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,566 copying build/lib.linux-armv7l-cpython-311/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,568 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,570 copying build/lib.linux-armv7l-cpython-311/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,572 copying build/lib.linux-armv7l-cpython-311/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,575 copying build/lib.linux-armv7l-cpython-311/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,576 copying build/lib.linux-armv7l-cpython-311/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,578 copying build/lib.linux-armv7l-cpython-311/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,580 copying build/lib.linux-armv7l-cpython-311/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,582 copying build/lib.linux-armv7l-cpython-311/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,584 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,587 copying build/lib.linux-armv7l-cpython-311/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit 2023-09-11T10:41:51,590 creating build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,590 copying build/lib.linux-armv7l-cpython-311/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,592 copying build/lib.linux-armv7l-cpython-311/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,595 copying build/lib.linux-armv7l-cpython-311/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,597 copying build/lib.linux-armv7l-cpython-311/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,599 copying build/lib.linux-armv7l-cpython-311/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,601 copying build/lib.linux-armv7l-cpython-311/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,604 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pairlist.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,606 creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,607 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,609 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,610 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,613 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,615 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,617 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,619 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,620 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,623 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,625 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,627 copying build/lib.linux-armv7l-cpython-311/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat 2023-09-11T10:41:51,629 copying build/lib.linux-armv7l-cpython-311/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils 2023-09-11T10:41:51,631 creating build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,632 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,634 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,637 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,640 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,641 copying build/lib.linux-armv7l-cpython-311/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs 2023-09-11T10:41:51,644 creating build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T10:41:51,645 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T10:41:51,648 creating build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-11T10:41:51,649 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/data/standard_residues.lib -> build/bdist.linux-armv7l/wheel/parmed/modeller/data 2023-09-11T10:41:51,653 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T10:41:51,655 copying build/lib.linux-armv7l-cpython-311/parmed/modeller/standardtemplates.py -> build/bdist.linux-armv7l/wheel/parmed/modeller 2023-09-11T10:41:51,657 creating build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,658 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,659 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,662 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,664 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,667 copying build/lib.linux-armv7l-cpython-311/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker 2023-09-11T10:41:51,669 running install_egg_info 2023-09-11T10:41:51,729 running egg_info 2023-09-11T10:41:51,752 writing ParmEd.egg-info/PKG-INFO 2023-09-11T10:41:51,755 writing dependency_links to ParmEd.egg-info/dependency_links.txt 2023-09-11T10:41:51,757 writing entry points to ParmEd.egg-info/entry_points.txt 2023-09-11T10:41:51,759 writing top-level names to ParmEd.egg-info/top_level.txt 2023-09-11T10:41:51,794 dependency src/CompatabilityMacros.h won't be automatically included in the manifest: the path doesn't exist 2023-09-11T10:41:51,818 reading manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-11T10:41:51,844 reading manifest template 'MANIFEST.in' 2023-09-11T10:41:51,890 writing manifest file 'ParmEd.egg-info/SOURCES.txt' 2023-09-11T10:41:51,892 Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-3.2.0-py3.11.egg-info 2023-09-11T10:41:51,904 running install_scripts 2023-09-11T10:41:51,962 creating build/bdist.linux-armv7l/wheel/ParmEd-3.2.0.dist-info/WHEEL 2023-09-11T10:41:51,965 creating '/tmp/pip-wheel-5ncrsc1p/ParmEd-3.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-09-11T10:41:51,968 adding 'parmed/__init__.py' 2023-09-11T10:41:51,969 adding 'parmed/_version.py' 2023-09-11T10:41:51,971 adding 'parmed/constants.py' 2023-09-11T10:41:51,972 adding 'parmed/exceptions.py' 2023-09-11T10:41:51,974 adding 'parmed/geometry.py' 2023-09-11T10:41:51,977 adding 'parmed/parameters.py' 2023-09-11T10:41:51,980 adding 'parmed/periodic_table.py' 2023-09-11T10:41:51,982 adding 'parmed/residue.py' 2023-09-11T10:41:51,984 adding 'parmed/scripts.py' 2023-09-11T10:41:52,004 adding 'parmed/structure.py' 2023-09-11T10:41:52,007 adding 'parmed/symmetry.py' 2023-09-11T10:41:52,027 adding 'parmed/topologyobjects.py' 2023-09-11T10:41:52,030 adding 'parmed/vec3.py' 2023-09-11T10:41:52,032 adding 'parmed/amber/__init__.py' 2023-09-11T10:41:52,044 adding 'parmed/amber/_amberparm.py' 2023-09-11T10:41:52,048 adding 'parmed/amber/_chamberparm.py' 2023-09-11T10:41:52,209 adding 'parmed/amber/_rdparm.cpython-311-arm-linux-gnueabihf.so' 2023-09-11T10:41:52,221 adding 'parmed/amber/_tinkerparm.py' 2023-09-11T10:41:52,225 adding 'parmed/amber/amberformat.py' 2023-09-11T10:41:52,229 adding 'parmed/amber/asciicrd.py' 2023-09-11T10:41:52,232 adding 'parmed/amber/mask.py' 2023-09-11T10:41:52,235 adding 'parmed/amber/netcdffiles.py' 2023-09-11T10:41:52,238 adding 'parmed/amber/offlib.py' 2023-09-11T10:41:52,242 adding 'parmed/amber/parameters.py' 2023-09-11T10:41:52,244 adding 'parmed/amber/readparm.py' 2023-09-11T10:41:52,249 adding 'parmed/amber/titratable_residues.py' 2023-09-11T10:41:52,251 adding 'parmed/amber/mdin/__init__.py' 2023-09-11T10:41:52,253 adding 'parmed/amber/mdin/cntrl.py' 2023-09-11T10:41:52,254 adding 'parmed/amber/mdin/ewald.py' 2023-09-11T10:41:52,257 adding 'parmed/amber/mdin/mdin.py' 2023-09-11T10:41:52,258 adding 'parmed/amber/mdin/pb.py' 2023-09-11T10:41:52,260 adding 'parmed/amber/mdin/qmmm.py' 2023-09-11T10:41:52,261 adding 'parmed/charmm/__init__.py' 2023-09-11T10:41:52,263 adding 'parmed/charmm/_charmmfile.py' 2023-09-11T10:41:52,265 adding 'parmed/charmm/charmmcrds.py' 2023-09-11T10:41:52,270 adding 'parmed/charmm/parameters.py' 2023-09-11T10:41:52,274 adding 'parmed/charmm/psf.py' 2023-09-11T10:41:52,276 adding 'parmed/formats/__init__.py' 2023-09-11T10:41:52,279 adding 'parmed/formats/mol2.py' 2023-09-11T10:41:52,288 adding 'parmed/formats/pdb.py' 2023-09-11T10:41:52,291 adding 'parmed/formats/pqr.py' 2023-09-11T10:41:52,293 adding 'parmed/formats/psf.py' 2023-09-11T10:41:52,295 adding 'parmed/formats/registry.py' 2023-09-11T10:41:52,296 adding 'parmed/formats/sdf.py' 2023-09-11T10:41:52,300 adding 'parmed/formats/pdbx/PdbxContainers.py' 2023-09-11T10:41:52,302 adding 'parmed/formats/pdbx/PdbxReader.py' 2023-09-11T10:41:52,304 adding 'parmed/formats/pdbx/PdbxWriter.py' 2023-09-11T10:41:52,305 adding 'parmed/formats/pdbx/__init__.py' 2023-09-11T10:41:52,306 adding 'parmed/gromacs/__init__.py' 2023-09-11T10:41:52,309 adding 'parmed/gromacs/_cpp.py' 2023-09-11T10:41:52,310 adding 'parmed/gromacs/_gromacsfile.py' 2023-09-11T10:41:52,312 adding 'parmed/gromacs/gromacsgro.py' 2023-09-11T10:41:52,323 adding 'parmed/gromacs/gromacstop.py' 2023-09-11T10:41:52,325 adding 'parmed/modeller/__init__.py' 2023-09-11T10:41:52,330 adding 'parmed/modeller/residue.py' 2023-09-11T10:41:52,331 adding 'parmed/modeller/standardtemplates.py' 2023-09-11T10:41:52,340 adding 'parmed/modeller/data/standard_residues.lib' 2023-09-11T10:41:52,342 adding 'parmed/namd/__init__.py' 2023-09-11T10:41:52,344 adding 'parmed/namd/namdbinfiles.py' 2023-09-11T10:41:52,346 adding 'parmed/openmm/__init__.py' 2023-09-11T10:41:52,351 adding 'parmed/openmm/parameters.py' 2023-09-11T10:41:52,355 adding 'parmed/openmm/reporters.py' 2023-09-11T10:41:52,358 adding 'parmed/openmm/topsystem.py' 2023-09-11T10:41:52,359 adding 'parmed/openmm/utils.py' 2023-09-11T10:41:52,361 adding 'parmed/openmm/xmlfile.py' 2023-09-11T10:41:52,363 adding 'parmed/rdkit/__init__.py' 2023-09-11T10:41:52,364 adding 'parmed/rdkit/rdkit.py' 2023-09-11T10:41:52,366 adding 'parmed/rosetta/__init__.py' 2023-09-11T10:41:52,367 adding 'parmed/rosetta/pose.py' 2023-09-11T10:41:52,368 adding 'parmed/tinker/__init__.py' 2023-09-11T10:41:52,371 adding 'parmed/tinker/parameterfile.py' 2023-09-11T10:41:52,373 adding 'parmed/tinker/system.py' 2023-09-11T10:41:52,375 adding 'parmed/tinker/tinkerfiles.py' 2023-09-11T10:41:52,377 adding 'parmed/tinker/topologyobjects.py' 2023-09-11T10:41:52,379 adding 'parmed/tools/__init__.py' 2023-09-11T10:41:52,400 adding 'parmed/tools/actions.py' 2023-09-11T10:41:52,403 adding 'parmed/tools/add1264.py' 2023-09-11T10:41:52,404 adding 'parmed/tools/addljtype.py' 2023-09-11T10:41:52,406 adding 'parmed/tools/argumentlist.py' 2023-09-11T10:41:52,407 adding 'parmed/tools/changeradii.py' 2023-09-11T10:41:52,409 adding 'parmed/tools/checkvalidity.py' 2023-09-11T10:41:52,411 adding 'parmed/tools/coarsegrain.py' 2023-09-11T10:41:52,412 adding 'parmed/tools/exceptions.py' 2023-09-11T10:41:52,415 adding 'parmed/tools/logos.py' 2023-09-11T10:41:52,417 adding 'parmed/tools/parmed_cmd.py' 2023-09-11T10:41:52,418 adding 'parmed/tools/parmlist.py' 2023-09-11T10:41:52,420 adding 'parmed/tools/gui/__init__.py' 2023-09-11T10:41:52,424 adding 'parmed/tools/gui/_guiactions.py' 2023-09-11T10:41:52,426 adding 'parmed/tools/gui/_guiwidgets.py' 2023-09-11T10:41:52,427 adding 'parmed/tools/gui/guiactions.py' 2023-09-11T10:41:52,429 adding 'parmed/tools/gui/guifiletools.py' 2023-09-11T10:41:52,430 adding 'parmed/tools/gui/guitools.py' 2023-09-11T10:41:52,432 adding 'parmed/tools/simulations/__init__.py' 2023-09-11T10:41:52,436 adding 'parmed/tools/simulations/openmm.py' 2023-09-11T10:41:52,438 adding 'parmed/tools/simulations/sanderapi.py' 2023-09-11T10:41:52,440 adding 'parmed/unit/__init__.py' 2023-09-11T10:41:52,442 adding 'parmed/unit/basedimension.py' 2023-09-11T10:41:52,443 adding 'parmed/unit/baseunit.py' 2023-09-11T10:41:52,445 adding 'parmed/unit/constants.py' 2023-09-11T10:41:52,447 adding 'parmed/unit/mymatrix.py' 2023-09-11T10:41:52,448 adding 'parmed/unit/prefix.py' 2023-09-11T10:41:52,452 adding 'parmed/unit/quantity.py' 2023-09-11T10:41:52,453 adding 'parmed/unit/standard_dimensions.py' 2023-09-11T10:41:52,457 adding 'parmed/unit/unit.py' 2023-09-11T10:41:52,459 adding 'parmed/unit/unit_definitions.py' 2023-09-11T10:41:52,460 adding 'parmed/unit/unit_math.py' 2023-09-11T10:41:52,462 adding 'parmed/unit/unit_operators.py' 2023-09-11T10:41:52,464 adding 'parmed/utils/__init__.py' 2023-09-11T10:41:52,465 adding 'parmed/utils/decorators.py' 2023-09-11T10:41:52,467 adding 'parmed/utils/io.py' 2023-09-11T10:41:52,472 adding 'parmed/utils/netcdf.py' 2023-09-11T10:41:52,474 adding 'parmed/utils/pairlist.py' 2023-09-11T10:41:52,475 adding 'parmed/utils/pandautils.py' 2023-09-11T10:41:52,479 adding 'parmed/utils/six.py' 2023-09-11T10:41:52,481 adding 'parmed/utils/timer.py' 2023-09-11T10:41:52,482 adding 'parmed/utils/fortranformat/FortranRecordReader.py' 2023-09-11T10:41:52,484 adding 'parmed/utils/fortranformat/FortranRecordWriter.py' 2023-09-11T10:41:52,485 adding 'parmed/utils/fortranformat/__init__.py' 2023-09-11T10:41:52,486 adding 'parmed/utils/fortranformat/_edit_descriptors.py' 2023-09-11T10:41:52,487 adding 'parmed/utils/fortranformat/_exceptions.py' 2023-09-11T10:41:52,489 adding 'parmed/utils/fortranformat/_input.py' 2023-09-11T10:41:52,491 adding 'parmed/utils/fortranformat/_lexer.py' 2023-09-11T10:41:52,492 adding 'parmed/utils/fortranformat/_misc.py' 2023-09-11T10:41:52,496 adding 'parmed/utils/fortranformat/_output.py' 2023-09-11T10:41:52,498 adding 'parmed/utils/fortranformat/_parser.py' 2023-09-11T10:41:52,499 adding 'parmed/utils/fortranformat/config.py' 2023-09-11T10:41:52,500 adding 'ParmEd-3.2.0.dist-info/METADATA' 2023-09-11T10:41:52,501 adding 'ParmEd-3.2.0.dist-info/WHEEL' 2023-09-11T10:41:52,502 adding 'ParmEd-3.2.0.dist-info/entry_points.txt' 2023-09-11T10:41:52,503 adding 'ParmEd-3.2.0.dist-info/top_level.txt' 2023-09-11T10:41:52,505 adding 'ParmEd-3.2.0.dist-info/RECORD' 2023-09-11T10:41:52,516 removing build/bdist.linux-armv7l/wheel 2023-09-11T10:41:52,692 Building wheel for parmed (setup.py): finished with status 'done' 2023-09-11T10:41:52,704 Created wheel for parmed: filename=ParmEd-3.2.0-cp311-cp311-linux_armv7l.whl size=872050 sha256=cfa64b41d4859d3cc318c205bda3c5a858197f9fd1afc3a55c92a8038b7500f7 2023-09-11T10:41:52,705 Stored in directory: /tmp/pip-ephem-wheel-cache-78bxfi5o/wheels/09/da/a2/631449d2ee6f204a64001e78e62f195974fd2260ae693519d9 2023-09-11T10:41:52,718 Successfully built parmed 2023-09-11T10:41:52,746 Removed build tracker: '/tmp/pip-build-tracker-zxt1yxi9'