2023-09-11T16:30:50,610 Created temporary directory: /tmp/pip-build-tracker-zvu53lic
2023-09-11T16:30:50,611 Initialized build tracking at /tmp/pip-build-tracker-zvu53lic
2023-09-11T16:30:50,611 Created build tracker: /tmp/pip-build-tracker-zvu53lic
2023-09-11T16:30:50,612 Entered build tracker: /tmp/pip-build-tracker-zvu53lic
2023-09-11T16:30:50,613 Created temporary directory: /tmp/pip-wheel-y3ypgl0u
2023-09-11T16:30:50,615 Created temporary directory: /tmp/pip-ephem-wheel-cache-4y58l186
2023-09-11T16:30:50,640 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-11T16:30:50,643 2 location(s) to search for versions of unifrac:
2023-09-11T16:30:50,643 * https://pypi.org/simple/unifrac/
2023-09-11T16:30:50,643 * https://www.piwheels.org/simple/unifrac/
2023-09-11T16:30:50,644 Fetching project page and analyzing links: https://pypi.org/simple/unifrac/
2023-09-11T16:30:50,645 Getting page https://pypi.org/simple/unifrac/
2023-09-11T16:30:50,646 Found index url https://pypi.org/simple/
2023-09-11T16:30:50,863 Fetched page https://pypi.org/simple/unifrac/ as application/vnd.pypi.simple.v1+json
2023-09-11T16:30:50,864   Found link https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.10.0
2023-09-11T16:30:50,865   Found link https://files.pythonhosted.org/packages/c4/fe/bf6d6113ab675272f6eb6e593d6842e4f2c074ee9152b6f4316a621462f7/unifrac-0.20.1.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.1
2023-09-11T16:30:50,866   Found link https://files.pythonhosted.org/packages/ef/40/fcc8a73f40b27682661cad19dac3fbc0ed4f5cd3593d86939b2eb7309956/unifrac-0.20.3.tar.gz (from https://pypi.org/simple/unifrac/), version: 0.20.3
2023-09-11T16:30:50,867 Fetching project page and analyzing links: https://www.piwheels.org/simple/unifrac/
2023-09-11T16:30:50,867 Getting page https://www.piwheels.org/simple/unifrac/
2023-09-11T16:30:50,869 Found index url https://www.piwheels.org/simple/
2023-09-11T16:30:51,376 Fetched page https://www.piwheels.org/simple/unifrac/ as text/html
2023-09-11T16:30:51,377 Skipping link: not a file: https://www.piwheels.org/simple/unifrac/
2023-09-11T16:30:51,378 Skipping link: not a file: https://pypi.org/simple/unifrac/
2023-09-11T16:30:51,398 Given no hashes to check 1 links for project 'unifrac': discarding no candidates
2023-09-11T16:30:51,423 Collecting unifrac==0.10.0
2023-09-11T16:30:51,426   Created temporary directory: /tmp/pip-unpack-el2lkuzr
2023-09-11T16:30:51,693   Downloading unifrac-0.10.0.tar.gz (219 kB)
2023-09-11T16:30:51,921   Added unifrac==0.10.0 from https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-zvu53lic'
2023-09-11T16:30:51,923   Running setup.py (path:/tmp/pip-wheel-y3ypgl0u/unifrac_1a73d600cb104e478a27a5b35f584319/setup.py) egg_info for package unifrac
2023-09-11T16:30:51,924   Created temporary directory: /tmp/pip-pip-egg-info-5s9b9tk6
2023-09-11T16:30:51,925   Preparing metadata (setup.py): started
2023-09-11T16:30:51,926   Running command python setup.py egg_info
2023-09-11T16:30:52,561   Traceback (most recent call last):
2023-09-11T16:30:52,561     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-11T16:30:52,561       from . import multiarray
2023-09-11T16:30:52,562     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-11T16:30:52,563       from . import overrides
2023-09-11T16:30:52,563     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-11T16:30:52,564       from numpy.core._multiarray_umath import (
2023-09-11T16:30:52,564   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-11T16:30:52,566   During handling of the above exception, another exception occurred:

2023-09-11T16:30:52,568   Traceback (most recent call last):
2023-09-11T16:30:52,569     File "<string>", line 2, in <module>
2023-09-11T16:30:52,570     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-11T16:30:52,570     File "/tmp/pip-wheel-y3ypgl0u/unifrac_1a73d600cb104e478a27a5b35f584319/setup.py", line 11, in <module>
2023-09-11T16:30:52,571       import numpy as np
2023-09-11T16:30:52,572     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-11T16:30:52,572       from . import core
2023-09-11T16:30:52,573     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-11T16:30:52,574       raise ImportError(msg)
2023-09-11T16:30:52,574   ImportError:

2023-09-11T16:30:52,576   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-11T16:30:52,577   Importing the numpy C-extensions failed. This error can happen for
2023-09-11T16:30:52,578   many reasons, often due to issues with your setup or how NumPy was
2023-09-11T16:30:52,578   installed.

2023-09-11T16:30:52,580   We have compiled some common reasons and troubleshooting tips at:

2023-09-11T16:30:52,581       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-11T16:30:52,583   Please note and check the following:

2023-09-11T16:30:52,584     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-11T16:30:52,585     * The NumPy version is: "1.25.2"

2023-09-11T16:30:52,586   and make sure that they are the versions you expect.
2023-09-11T16:30:52,587   Please carefully study the documentation linked above for further help.

2023-09-11T16:30:52,589   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-11T16:30:52,651   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-11T16:30:52,663   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-11T16:30:52,663   exec(compile('"'"''"'"''"'"'
2023-09-11T16:30:52,663   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-11T16:30:52,663   #
2023-09-11T16:30:52,663   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-11T16:30:52,663   #   import from `distutils.core` to work with newer packaging standards.
2023-09-11T16:30:52,663   # - It provides a clear error message when setuptools is not installed.
2023-09-11T16:30:52,663   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-11T16:30:52,663   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-11T16:30:52,663   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-11T16:30:52,663   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-11T16:30:52,663   import os, sys, tokenize
2023-09-11T16:30:52,663   
2023-09-11T16:30:52,663   try:
2023-09-11T16:30:52,663       import setuptools
2023-09-11T16:30:52,663   except ImportError as error:
2023-09-11T16:30:52,663       print(
2023-09-11T16:30:52,663           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-11T16:30:52,663           "the build environment.",
2023-09-11T16:30:52,663           file=sys.stderr,
2023-09-11T16:30:52,663       )
2023-09-11T16:30:52,663       sys.exit(1)
2023-09-11T16:30:52,663   
2023-09-11T16:30:52,663   __file__ = %r
2023-09-11T16:30:52,663   sys.argv[0] = __file__
2023-09-11T16:30:52,663   
2023-09-11T16:30:52,663   if os.path.exists(__file__):
2023-09-11T16:30:52,663       filename = __file__
2023-09-11T16:30:52,663       with tokenize.open(__file__) as f:
2023-09-11T16:30:52,663           setup_py_code = f.read()
2023-09-11T16:30:52,663   else:
2023-09-11T16:30:52,663       filename = "<auto-generated setuptools caller>"
2023-09-11T16:30:52,663       setup_py_code = "from setuptools import setup; setup()"
2023-09-11T16:30:52,663   
2023-09-11T16:30:52,663   exec(compile(setup_py_code, filename, "exec"))
2023-09-11T16:30:52,663   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-y3ypgl0u/unifrac_1a73d600cb104e478a27a5b35f584319/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-5s9b9tk6[/]
2023-09-11T16:30:52,664   [bold magenta]cwd[/]: /tmp/pip-wheel-y3ypgl0u/unifrac_1a73d600cb104e478a27a5b35f584319/
2023-09-11T16:30:52,665   Preparing metadata (setup.py): finished with status 'error'
2023-09-11T16:30:52,666 ERROR: [present-rich] metadata generation failed
2023-09-11T16:30:52,672 Exception information:
2023-09-11T16:30:52,672 Traceback (most recent call last):
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-11T16:30:52,672     call_subprocess(
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-11T16:30:52,672     raise error
2023-09-11T16:30:52,672 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-11T16:30:52,672 
2023-09-11T16:30:52,672 The above exception was the direct cause of the following exception:
2023-09-11T16:30:52,672 
2023-09-11T16:30:52,672 Traceback (most recent call last):
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-11T16:30:52,672     status = run_func(*args)
2023-09-11T16:30:52,672              ^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-11T16:30:52,672     return func(self, options, args)
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-11T16:30:52,672     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-11T16:30:52,672                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-11T16:30:52,672     result = self._result = resolver.resolve(
2023-09-11T16:30:52,672                             ^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-11T16:30:52,672     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-11T16:30:52,672             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-11T16:30:52,672     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-11T16:30:52,672     if not criterion.candidates:
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-11T16:30:52,672     return bool(self._sequence)
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-11T16:30:52,672     return any(self)
2023-09-11T16:30:52,672            ^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-11T16:30:52,672     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-11T16:30:52,672     candidate = func()
2023-09-11T16:30:52,672                 ^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-11T16:30:52,672     self._link_candidate_cache[link] = LinkCandidate(
2023-09-11T16:30:52,672                                        ^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-11T16:30:52,672     super().__init__(
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-11T16:30:52,672     self.dist = self._prepare()
2023-09-11T16:30:52,672                 ^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-11T16:30:52,672     dist = self._prepare_distribution()
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-11T16:30:52,672     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-11T16:30:52,672     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-11T16:30:52,672     dist = _get_prepared_distribution(
2023-09-11T16:30:52,672            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-11T16:30:52,672     abstract_dist.prepare_distribution_metadata(
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-11T16:30:52,672     self.req.prepare_metadata()
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-11T16:30:52,672     self.metadata_directory = generate_metadata_legacy(
2023-09-11T16:30:52,672                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-11T16:30:52,672   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-11T16:30:52,672     raise MetadataGenerationFailed(package_details=details) from error
2023-09-11T16:30:52,672 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-11T16:30:52,684 Removed unifrac==0.10.0 from https://files.pythonhosted.org/packages/be/89/683b0925dadf0c63f015aba45e56d943a738caa70f736233e8654dc4a713/unifrac-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-zvu53lic'
2023-09-11T16:30:52,685 Removed build tracker: '/tmp/pip-build-tracker-zvu53lic'