2023-09-11T20:16:42,749 Created temporary directory: /tmp/pip-build-tracker-crc68q8l
2023-09-11T20:16:42,750 Initialized build tracking at /tmp/pip-build-tracker-crc68q8l
2023-09-11T20:16:42,750 Created build tracker: /tmp/pip-build-tracker-crc68q8l
2023-09-11T20:16:42,751 Entered build tracker: /tmp/pip-build-tracker-crc68q8l
2023-09-11T20:16:42,751 Created temporary directory: /tmp/pip-wheel-3qmuw19w
2023-09-11T20:16:42,754 Created temporary directory: /tmp/pip-ephem-wheel-cache-g6i9q1gf
2023-09-11T20:16:42,779 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-11T20:16:42,782 2 location(s) to search for versions of py-popgen:
2023-09-11T20:16:42,782 * https://pypi.org/simple/py-popgen/
2023-09-11T20:16:42,782 * https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:42,783 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2023-09-11T20:16:42,784 Getting page https://pypi.org/simple/py-popgen/
2023-09-11T20:16:42,786 Found index url https://pypi.org/simple/
2023-09-11T20:16:43,036 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2023-09-11T20:16:43,039   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2023-09-11T20:16:43,040   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2023-09-11T20:16:43,042   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2023-09-11T20:16:43,044   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2023-09-11T20:16:43,045   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2023-09-11T20:16:43,047   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2023-09-11T20:16:43,049   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2023-09-11T20:16:43,051   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2023-09-11T20:16:43,052   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2023-09-11T20:16:43,054   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2023-09-11T20:16:43,055   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2023-09-11T20:16:43,056   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2023-09-11T20:16:43,057   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,058   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2023-09-11T20:16:43,059   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2023-09-11T20:16:43,060   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2023-09-11T20:16:43,061 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:43,061 Getting page https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:43,063 Found index url https://www.piwheels.org/simple/
2023-09-11T20:16:43,347 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2023-09-11T20:16:43,355   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:16:43,356   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:16:43,356   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,357   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,358   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,358   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,359   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,359   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,360   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,361   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,361   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,361   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,362   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,362   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,363   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,364   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,364   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,365   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,365   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,366   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,367   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,367   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,368   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,368   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,368   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,369   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:43,369   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:43,370 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:43,370 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2023-09-11T20:16:43,391 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2023-09-11T20:16:43,409 Collecting py-popgen==0.1
2023-09-11T20:16:43,411   Created temporary directory: /tmp/pip-unpack-91hlpysg
2023-09-11T20:16:43,945   Downloading py-popgen-0.1.tar.gz (27.2 MB)
2023-09-11T20:16:54,965   Added py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz to build tracker '/tmp/pip-build-tracker-crc68q8l'
2023-09-11T20:16:54,967   Running setup.py (path:/tmp/pip-wheel-3qmuw19w/py-popgen_34b65d9dddc64a1c807320e0d22234c0/setup.py) egg_info for package py-popgen
2023-09-11T20:16:54,968   Created temporary directory: /tmp/pip-pip-egg-info-jsmaa7k1
2023-09-11T20:16:54,968   Preparing metadata (setup.py): started
2023-09-11T20:16:54,970   Running command python setup.py egg_info
2023-09-11T20:16:57,188   /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-3qmuw19w/py-popgen_34b65d9dddc64a1c807320e0d22234c0/pgpipe/test_cython.pyx
2023-09-11T20:16:57,188     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-11T20:16:57,465   Compiling pgpipe/test_cython.pyx because it changed.
2023-09-11T20:16:57,466   [1/1] Cythonizing pgpipe/test_cython.pyx
2023-09-11T20:16:57,910   running egg_info
2023-09-11T20:16:57,911   creating /tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info
2023-09-11T20:16:57,935   writing /tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/PKG-INFO
2023-09-11T20:16:57,938   writing dependency_links to /tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/dependency_links.txt
2023-09-11T20:16:57,940   writing requirements to /tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/requires.txt
2023-09-11T20:16:57,941   writing top-level names to /tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/top_level.txt
2023-09-11T20:16:57,943   writing manifest file '/tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:16:58,068   reading manifest file '/tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:16:58,070   reading manifest template 'MANIFEST.in'
2023-09-11T20:16:58,082   writing manifest file '/tmp/pip-pip-egg-info-jsmaa7k1/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:16:58,312   Preparing metadata (setup.py): finished with status 'done'
2023-09-11T20:16:58,316   Source in /tmp/pip-wheel-3qmuw19w/py-popgen_34b65d9dddc64a1c807320e0d22234c0 has version 0.1, which satisfies requirement py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz
2023-09-11T20:16:58,317   Removed py-popgen==0.1 from https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz from build tracker '/tmp/pip-build-tracker-crc68q8l'
2023-09-11T20:16:58,325 Created temporary directory: /tmp/pip-unpack-kubw748s
2023-09-11T20:16:58,326 Created temporary directory: /tmp/pip-unpack-ezv9l6zo
2023-09-11T20:16:58,334 Building wheels for collected packages: py-popgen
2023-09-11T20:16:58,338   Created temporary directory: /tmp/pip-wheel-0p6138vl
2023-09-11T20:16:58,339   Building wheel for py-popgen (setup.py): started
2023-09-11T20:16:58,340   Destination directory: /tmp/pip-wheel-0p6138vl
2023-09-11T20:16:58,341   Running command python setup.py bdist_wheel
2023-09-11T20:16:59,836   running bdist_wheel
2023-09-11T20:16:59,930   running build
2023-09-11T20:16:59,931   running build_py
2023-09-11T20:16:59,959   creating build
2023-09-11T20:16:59,959   creating build/lib.linux-armv7l-cpython-311
2023-09-11T20:16:59,960   creating build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,962   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,964   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,966   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,968   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,971   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,974   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,976   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,978   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,981   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,983   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,985   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,987   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,990   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,993   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,996   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:16:59,998   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,001   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,004   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,005   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,008   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,009   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,011   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,013   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,016   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,018   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,021   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,023   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,026   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,029   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,032   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,034   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,036   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,038   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,041   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,043   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,046   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,049   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,051   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,052   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,054   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,056   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,059   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,061   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,063   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,065   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,067   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,069   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,071   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,074   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,076   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,078   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,080   running egg_info
2023-09-11T20:17:00,134   writing py_popgen.egg-info/PKG-INFO
2023-09-11T20:17:00,136   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2023-09-11T20:17:00,138   writing requirements to py_popgen.egg-info/requires.txt
2023-09-11T20:17:00,139   writing top-level names to py_popgen.egg-info/top_level.txt
2023-09-11T20:17:00,167   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:00,170   reading manifest template 'MANIFEST.in'
2023-09-11T20:17:00,186   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:00,189   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,195   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,199   running build_ext
2023-09-11T20:17:00,205   building 'pgpipe.test_cython' extension
2023-09-11T20:17:00,206   creating build/temp.linux-armv7l-cpython-311
2023-09-11T20:17:00,206   creating build/temp.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:00,207   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o
2023-09-11T20:17:00,587   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2023-09-11T20:17:00,589   pgpipe/test_cython.c:2802:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:00,589    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:17:00,590         |                 ^
2023-09-11T20:17:00,591   pgpipe/test_cython.c:2802:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:00,592    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:17:00,593         |                                           ^
2023-09-11T20:17:00,602   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2023-09-11T20:17:00,604   pgpipe/test_cython.c:3277:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:00,605    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:17:00,606         |                 ^
2023-09-11T20:17:00,607   pgpipe/test_cython.c:3277:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:00,608    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:17:00,609         |                                           ^
2023-09-11T20:17:03,963   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so
2023-09-11T20:17:04,065   running build_scripts
2023-09-11T20:17:04,066   creating build/scripts-3.11
2023-09-11T20:17:04,066   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.11
2023-09-11T20:17:04,070   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.11
2023-09-11T20:17:04,073   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.11
2023-09-11T20:17:04,075   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.11
2023-09-11T20:17:04,078   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.11
2023-09-11T20:17:04,082   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.11
2023-09-11T20:17:04,084   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.11
2023-09-11T20:17:04,086   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.11
2023-09-11T20:17:04,088   copying and adjusting pgpipe/convert.py -> build/scripts-3.11
2023-09-11T20:17:04,091   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.11
2023-09-11T20:17:04,093   copying and adjusting pgpipe/admixture.py -> build/scripts-3.11
2023-09-11T20:17:04,095   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.11
2023-09-11T20:17:04,098   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.11
2023-09-11T20:17:04,100   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.11
2023-09-11T20:17:04,102   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.11
2023-09-11T20:17:04,104   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.11
2023-09-11T20:17:04,106   changing mode of build/scripts-3.11/vcf_filter.py from 644 to 755
2023-09-11T20:17:04,107   changing mode of build/scripts-3.11/vcf_calc.py from 644 to 755
2023-09-11T20:17:04,107   changing mode of build/scripts-3.11/vcf_split.py from 644 to 755
2023-09-11T20:17:04,107   changing mode of build/scripts-3.11/vcf_phase.py from 644 to 755
2023-09-11T20:17:04,108   changing mode of build/scripts-3.11/four_gamete.py from 644 to 755
2023-09-11T20:17:04,108   changing mode of build/scripts-3.11/stat_sampler.py from 644 to 755
2023-09-11T20:17:04,109   changing mode of build/scripts-3.11/bed_tasks.py from 644 to 755
2023-09-11T20:17:04,109   changing mode of build/scripts-3.11/informative_loci_filter.py from 644 to 755
2023-09-11T20:17:04,110   changing mode of build/scripts-3.11/convert.py from 644 to 755
2023-09-11T20:17:04,110   changing mode of build/scripts-3.11/vcf_to_ima.py from 644 to 755
2023-09-11T20:17:04,111   changing mode of build/scripts-3.11/admixture.py from 644 to 755
2023-09-11T20:17:04,111   changing mode of build/scripts-3.11/plink_ld.py from 644 to 755
2023-09-11T20:17:04,111   changing mode of build/scripts-3.11/ima3_wrapper.py from 644 to 755
2023-09-11T20:17:04,112   changing mode of build/scripts-3.11/eigenstrat_fstats.py from 644 to 755
2023-09-11T20:17:04,112   changing mode of build/scripts-3.11/vcf_liftover.py from 644 to 755
2023-09-11T20:17:04,113   changing mode of build/scripts-3.11/vcf_utilities.py from 644 to 755
2023-09-11T20:17:04,136   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-11T20:17:04,136   !!

2023-09-11T20:17:04,137           ********************************************************************************
2023-09-11T20:17:04,138           Please avoid running ``setup.py`` directly.
2023-09-11T20:17:04,138           Instead, use pypa/build, pypa/installer or other
2023-09-11T20:17:04,139           standards-based tools.

2023-09-11T20:17:04,140           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-11T20:17:04,141           ********************************************************************************

2023-09-11T20:17:04,142   !!
2023-09-11T20:17:04,143     self.initialize_options()
2023-09-11T20:17:04,160   installing to build/bdist.linux-armv7l/wheel
2023-09-11T20:17:04,161   running install
2023-09-11T20:17:04,184   running install_lib
2023-09-11T20:17:04,208   creating build/bdist.linux-armv7l
2023-09-11T20:17:04,209   creating build/bdist.linux-armv7l/wheel
2023-09-11T20:17:04,211   creating build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,212   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,215   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,218   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,220   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,222   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,224   copying build/lib.linux-armv7l-cpython-311/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,227   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,229   copying build/lib.linux-armv7l-cpython-311/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,232   copying build/lib.linux-armv7l-cpython-311/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,234   copying build/lib.linux-armv7l-cpython-311/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,236   copying build/lib.linux-armv7l-cpython-311/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,238   copying build/lib.linux-armv7l-cpython-311/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,240   copying build/lib.linux-armv7l-cpython-311/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,243   copying build/lib.linux-armv7l-cpython-311/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,245   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,247   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,249   copying build/lib.linux-armv7l-cpython-311/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,252   copying build/lib.linux-armv7l-cpython-311/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,254   copying build/lib.linux-armv7l-cpython-311/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,256   copying build/lib.linux-armv7l-cpython-311/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,258   copying build/lib.linux-armv7l-cpython-311/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,260   copying build/lib.linux-armv7l-cpython-311/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,261   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,263   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,266   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,272   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,275   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,283   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,288   copying build/lib.linux-armv7l-cpython-311/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,289   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,292   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,295   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,297   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,299   copying build/lib.linux-armv7l-cpython-311/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,301   copying build/lib.linux-armv7l-cpython-311/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,303   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,306   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,308   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,311   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,313   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,316   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,317   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,320   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,321   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,324   copying build/lib.linux-armv7l-cpython-311/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,326   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,328   copying build/lib.linux-armv7l-cpython-311/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,330   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,331   copying build/lib.linux-armv7l-cpython-311/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,334   copying build/lib.linux-armv7l-cpython-311/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,336   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,338   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,341   copying build/lib.linux-armv7l-cpython-311/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,343   copying build/lib.linux-armv7l-cpython-311/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:04,345   running install_egg_info
2023-09-11T20:17:04,374   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1-py3.11.egg-info
2023-09-11T20:17:04,383   running install_scripts
2023-09-11T20:17:04,384   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.data
2023-09-11T20:17:04,384   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,385   copying build/scripts-3.11/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,388   copying build/scripts-3.11/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,390   copying build/scripts-3.11/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,392   copying build/scripts-3.11/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,394   copying build/scripts-3.11/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,397   copying build/scripts-3.11/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,400   copying build/scripts-3.11/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,402   copying build/scripts-3.11/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,405   copying build/scripts-3.11/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,407   copying build/scripts-3.11/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,410   copying build/scripts-3.11/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,412   copying build/scripts-3.11/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,415   copying build/scripts-3.11/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,417   copying build/scripts-3.11/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,420   copying build/scripts-3.11/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,422   copying build/scripts-3.11/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts
2023-09-11T20:17:04,425   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_utilities.py to 755
2023-09-11T20:17:04,425   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/convert.py to 755
2023-09-11T20:17:04,426   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/stat_sampler.py to 755
2023-09-11T20:17:04,426   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/informative_loci_filter.py to 755
2023-09-11T20:17:04,427   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/eigenstrat_fstats.py to 755
2023-09-11T20:17:04,427   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/four_gamete.py to 755
2023-09-11T20:17:04,428   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_liftover.py to 755
2023-09-11T20:17:04,428   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/bed_tasks.py to 755
2023-09-11T20:17:04,428   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_calc.py to 755
2023-09-11T20:17:04,429   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/admixture.py to 755
2023-09-11T20:17:04,429   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/plink_ld.py to 755
2023-09-11T20:17:04,430   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_phase.py to 755
2023-09-11T20:17:04,430   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_split.py to 755
2023-09-11T20:17:04,431   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/ima3_wrapper.py to 755
2023-09-11T20:17:04,432   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_to_ima.py to 755
2023-09-11T20:17:04,432   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.data/scripts/vcf_filter.py to 755
2023-09-11T20:17:04,479   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.dist-info/WHEEL
2023-09-11T20:17:04,481   creating '/tmp/pip-wheel-0p6138vl/py_popgen-0.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-11T20:17:04,484   adding 'pgpipe/__init__.py'
2023-09-11T20:17:04,486   adding 'pgpipe/admixtools.py'
2023-09-11T20:17:04,489   adding 'pgpipe/admixture.py'
2023-09-11T20:17:04,490   adding 'pgpipe/argparse_sets.py'
2023-09-11T20:17:04,493   adding 'pgpipe/bcftools.py'
2023-09-11T20:17:04,495   adding 'pgpipe/beagle.py'
2023-09-11T20:17:04,496   adding 'pgpipe/bed_invert.py'
2023-09-11T20:17:04,499   adding 'pgpipe/bed_tasks.py'
2023-09-11T20:17:04,500   adding 'pgpipe/bedtools.py'
2023-09-11T20:17:04,502   adding 'pgpipe/convert.py'
2023-09-11T20:17:04,505   adding 'pgpipe/eigenstrat_fstats.py'
2023-09-11T20:17:04,507   adding 'pgpipe/extend_loci.py'
2023-09-11T20:17:04,508   adding 'pgpipe/fasta.py'
2023-09-11T20:17:04,509   adding 'pgpipe/fasta_utilities.py'
2023-09-11T20:17:04,510   adding 'pgpipe/filter_single_vcf.py'
2023-09-11T20:17:04,515   adding 'pgpipe/four_gamete.py'
2023-09-11T20:17:04,518   adding 'pgpipe/genome_region.py'
2023-09-11T20:17:04,520   adding 'pgpipe/get_nonmissing_chunks.py'
2023-09-11T20:17:04,521   adding 'pgpipe/graph_plotter.py'
2023-09-11T20:17:04,523   adding 'pgpipe/ima3_wrapper.py'
2023-09-11T20:17:04,524   adding 'pgpipe/ima_priors.py'
2023-09-11T20:17:04,526   adding 'pgpipe/ima_to_treemix.py'
2023-09-11T20:17:04,528   adding 'pgpipe/informative_loci_filter.py'
2023-09-11T20:17:04,529   adding 'pgpipe/logging_module.py'
2023-09-11T20:17:04,530   adding 'pgpipe/min_pop_filter.py'
2023-09-11T20:17:04,532   adding 'pgpipe/model.py'
2023-09-11T20:17:04,534   adding 'pgpipe/model_creator.py'
2023-09-11T20:17:04,536   adding 'pgpipe/model_sampler.py'
2023-09-11T20:17:04,538   adding 'pgpipe/parse_functions.py'
2023-09-11T20:17:04,539   adding 'pgpipe/picard.py'
2023-09-11T20:17:04,543   adding 'pgpipe/plink.py'
2023-09-11T20:17:04,547   adding 'pgpipe/plink_ld.py'
2023-09-11T20:17:04,550   adding 'pgpipe/shapeit.py'
2023-09-11T20:17:04,552   adding 'pgpipe/site_stats.py'
2023-09-11T20:17:04,556   adding 'pgpipe/stat_sampler.py'
2023-09-11T20:17:04,558   adding 'pgpipe/subtract_bed.py'
2023-09-11T20:17:04,600   adding 'pgpipe/test_cython.c'
2023-09-11T20:17:04,660   adding 'pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so'
2023-09-11T20:17:04,663   adding 'pgpipe/test_cython.pyx'
2023-09-11T20:17:04,666   adding 'pgpipe/vcf_calc.py'
2023-09-11T20:17:04,670   adding 'pgpipe/vcf_filter.py'
2023-09-11T20:17:04,674   adding 'pgpipe/vcf_filter_bcftools.py'
2023-09-11T20:17:04,678   adding 'pgpipe/vcf_filter_vcftools.py'
2023-09-11T20:17:04,680   adding 'pgpipe/vcf_liftover.py'
2023-09-11T20:17:04,685   adding 'pgpipe/vcf_phase.py'
2023-09-11T20:17:04,688   adding 'pgpipe/vcf_reader_func.py'
2023-09-11T20:17:04,690   adding 'pgpipe/vcf_ref_to_seq.py'
2023-09-11T20:17:04,693   adding 'pgpipe/vcf_sampler.py'
2023-09-11T20:17:04,696   adding 'pgpipe/vcf_split.py'
2023-09-11T20:17:04,698   adding 'pgpipe/vcf_split_pysam.py'
2023-09-11T20:17:04,702   adding 'pgpipe/vcf_to_ima.py'
2023-09-11T20:17:04,704   adding 'pgpipe/vcf_to_treemix.py'
2023-09-11T20:17:04,706   adding 'pgpipe/vcf_utilities.py'
2023-09-11T20:17:04,709   adding 'pgpipe/vcftools.py'
2023-09-11T20:17:04,712   adding 'py_popgen-0.1.data/scripts/admixture.py'
2023-09-11T20:17:04,715   adding 'py_popgen-0.1.data/scripts/bed_tasks.py'
2023-09-11T20:17:04,717   adding 'py_popgen-0.1.data/scripts/convert.py'
2023-09-11T20:17:04,720   adding 'py_popgen-0.1.data/scripts/eigenstrat_fstats.py'
2023-09-11T20:17:04,725   adding 'py_popgen-0.1.data/scripts/four_gamete.py'
2023-09-11T20:17:04,727   adding 'py_popgen-0.1.data/scripts/ima3_wrapper.py'
2023-09-11T20:17:04,729   adding 'py_popgen-0.1.data/scripts/informative_loci_filter.py'
2023-09-11T20:17:04,731   adding 'py_popgen-0.1.data/scripts/plink_ld.py'
2023-09-11T20:17:04,734   adding 'py_popgen-0.1.data/scripts/stat_sampler.py'
2023-09-11T20:17:04,737   adding 'py_popgen-0.1.data/scripts/vcf_calc.py'
2023-09-11T20:17:04,741   adding 'py_popgen-0.1.data/scripts/vcf_filter.py'
2023-09-11T20:17:04,743   adding 'py_popgen-0.1.data/scripts/vcf_liftover.py'
2023-09-11T20:17:04,748   adding 'py_popgen-0.1.data/scripts/vcf_phase.py'
2023-09-11T20:17:04,751   adding 'py_popgen-0.1.data/scripts/vcf_split.py'
2023-09-11T20:17:04,754   adding 'py_popgen-0.1.data/scripts/vcf_to_ima.py'
2023-09-11T20:17:04,757   adding 'py_popgen-0.1.data/scripts/vcf_utilities.py'
2023-09-11T20:17:04,759   adding 'py_popgen-0.1.dist-info/METADATA'
2023-09-11T20:17:04,760   adding 'py_popgen-0.1.dist-info/WHEEL'
2023-09-11T20:17:04,760   adding 'py_popgen-0.1.dist-info/top_level.txt'
2023-09-11T20:17:04,762   adding 'py_popgen-0.1.dist-info/RECORD'
2023-09-11T20:17:04,769   removing build/bdist.linux-armv7l/wheel
2023-09-11T20:17:04,927   Building wheel for py-popgen (setup.py): finished with status 'done'
2023-09-11T20:17:04,934   Created wheel for py-popgen: filename=py_popgen-0.1-cp311-cp311-linux_armv7l.whl size=385398 sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0
2023-09-11T20:17:04,936   Stored in directory: /tmp/pip-ephem-wheel-cache-g6i9q1gf/wheels/f0/2b/ff/395e2d560b8ef89a9b21fff141fcf59d402e200e4425c08049
2023-09-11T20:17:04,947 Successfully built py-popgen
2023-09-11T20:17:04,964 Removed build tracker: '/tmp/pip-build-tracker-crc68q8l'