2023-09-11T20:16:44,779 Created temporary directory: /tmp/pip-build-tracker-9kgy02f_
2023-09-11T20:16:44,780 Initialized build tracking at /tmp/pip-build-tracker-9kgy02f_
2023-09-11T20:16:44,781 Created build tracker: /tmp/pip-build-tracker-9kgy02f_
2023-09-11T20:16:44,781 Entered build tracker: /tmp/pip-build-tracker-9kgy02f_
2023-09-11T20:16:44,782 Created temporary directory: /tmp/pip-wheel-k4bxc20v
2023-09-11T20:16:44,785 Created temporary directory: /tmp/pip-ephem-wheel-cache-fqruzrmu
2023-09-11T20:16:44,811 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-11T20:16:44,815 2 location(s) to search for versions of py-popgen:
2023-09-11T20:16:44,815 * https://pypi.org/simple/py-popgen/
2023-09-11T20:16:44,815 * https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:44,816 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2023-09-11T20:16:44,817 Getting page https://pypi.org/simple/py-popgen/
2023-09-11T20:16:44,818 Found index url https://pypi.org/simple/
2023-09-11T20:16:44,962 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2023-09-11T20:16:44,966   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2023-09-11T20:16:44,967   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2023-09-11T20:16:44,969   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2023-09-11T20:16:44,970   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2023-09-11T20:16:44,972   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2023-09-11T20:16:44,974   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2023-09-11T20:16:44,975   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2023-09-11T20:16:44,977   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2023-09-11T20:16:44,979   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2023-09-11T20:16:44,980   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2023-09-11T20:16:44,982   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2023-09-11T20:16:44,983   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2023-09-11T20:16:44,984   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:44,985   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2023-09-11T20:16:44,986   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2023-09-11T20:16:44,987   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2023-09-11T20:16:44,988 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:44,988 Getting page https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:44,989 Found index url https://www.piwheels.org/simple/
2023-09-11T20:16:45,456 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2023-09-11T20:16:45,464   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:16:45,465   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:16:45,466   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,466   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,467   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,468   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,468   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,469   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,470   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,470   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,470   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:45,471   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:45,471   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:45,472   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:45,473   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,473   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,474   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,474   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,475   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,476   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,476   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,477   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,477   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,478   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,478   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,479   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:16:45,479   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:16:45,480 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:16:45,481 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2023-09-11T20:16:45,501 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2023-09-11T20:16:45,518 Collecting py-popgen==0.1.1
2023-09-11T20:16:45,521   Created temporary directory: /tmp/pip-unpack-tnl9_mc5
2023-09-11T20:16:46,253   Downloading py-popgen-0.1.1.tar.gz (27.2 MB)
2023-09-11T20:16:57,036   Added py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-9kgy02f_'
2023-09-11T20:16:57,038   Running setup.py (path:/tmp/pip-wheel-k4bxc20v/py-popgen_f2cedd7dd4814a7282e33665817e3cad/setup.py) egg_info for package py-popgen
2023-09-11T20:16:57,039   Created temporary directory: /tmp/pip-pip-egg-info-ljteekcb
2023-09-11T20:16:57,040   Preparing metadata (setup.py): started
2023-09-11T20:16:57,041   Running command python setup.py egg_info
2023-09-11T20:16:59,195   /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-k4bxc20v/py-popgen_f2cedd7dd4814a7282e33665817e3cad/pgpipe/test_cython.pyx
2023-09-11T20:16:59,195     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-11T20:16:59,473   Compiling pgpipe/test_cython.pyx because it changed.
2023-09-11T20:16:59,474   [1/1] Cythonizing pgpipe/test_cython.pyx
2023-09-11T20:16:59,924   running egg_info
2023-09-11T20:16:59,926   creating /tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info
2023-09-11T20:16:59,950   writing /tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/PKG-INFO
2023-09-11T20:16:59,953   writing dependency_links to /tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/dependency_links.txt
2023-09-11T20:16:59,955   writing requirements to /tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/requires.txt
2023-09-11T20:16:59,956   writing top-level names to /tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/top_level.txt
2023-09-11T20:16:59,957   writing manifest file '/tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:00,084   reading manifest file '/tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:00,086   reading manifest template 'MANIFEST.in'
2023-09-11T20:17:00,097   writing manifest file '/tmp/pip-pip-egg-info-ljteekcb/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:00,325   Preparing metadata (setup.py): finished with status 'done'
2023-09-11T20:17:00,329   Source in /tmp/pip-wheel-k4bxc20v/py-popgen_f2cedd7dd4814a7282e33665817e3cad has version 0.1.1, which satisfies requirement py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz
2023-09-11T20:17:00,330   Removed py-popgen==0.1.1 from https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-9kgy02f_'
2023-09-11T20:17:00,338 Created temporary directory: /tmp/pip-unpack-hxu3ij3a
2023-09-11T20:17:00,339 Created temporary directory: /tmp/pip-unpack-hrr49zhq
2023-09-11T20:17:00,347 Building wheels for collected packages: py-popgen
2023-09-11T20:17:00,351   Created temporary directory: /tmp/pip-wheel-mnk_b033
2023-09-11T20:17:00,352   Building wheel for py-popgen (setup.py): started
2023-09-11T20:17:00,353   Destination directory: /tmp/pip-wheel-mnk_b033
2023-09-11T20:17:00,354   Running command python setup.py bdist_wheel
2023-09-11T20:17:01,832   running bdist_wheel
2023-09-11T20:17:01,927   running build
2023-09-11T20:17:01,928   running build_py
2023-09-11T20:17:01,955   creating build
2023-09-11T20:17:01,955   creating build/lib.linux-armv7l-cpython-311
2023-09-11T20:17:01,956   creating build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,957   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,960   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,962   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,964   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,967   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,969   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,971   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,974   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,976   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,979   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,983   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,984   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,987   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,990   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,992   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,995   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,997   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:01,999   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,002   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,004   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,007   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,009   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,011   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,013   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,016   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,018   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,020   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,022   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,024   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,026   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,028   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,030   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,032   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,034   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,037   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,039   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,041   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,044   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,047   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,049   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,051   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,053   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,056   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,058   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,060   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,062   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,065   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,067   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,069   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,071   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,074   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,076   running egg_info
2023-09-11T20:17:02,130   writing py_popgen.egg-info/PKG-INFO
2023-09-11T20:17:02,133   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2023-09-11T20:17:02,135   writing requirements to py_popgen.egg-info/requires.txt
2023-09-11T20:17:02,136   writing top-level names to py_popgen.egg-info/top_level.txt
2023-09-11T20:17:02,164   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:02,167   reading manifest template 'MANIFEST.in'
2023-09-11T20:17:02,184   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:17:02,186   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,194   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,197   running build_ext
2023-09-11T20:17:02,204   building 'pgpipe.test_cython' extension
2023-09-11T20:17:02,205   creating build/temp.linux-armv7l-cpython-311
2023-09-11T20:17:02,206   creating build/temp.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:17:02,206   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o
2023-09-11T20:17:02,578   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2023-09-11T20:17:02,580   pgpipe/test_cython.c:2802:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:02,581    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:17:02,581         |                 ^
2023-09-11T20:17:02,583   pgpipe/test_cython.c:2802:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:02,584    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:17:02,585         |                                           ^
2023-09-11T20:17:02,594   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2023-09-11T20:17:02,597   pgpipe/test_cython.c:3277:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:02,597    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:17:02,598         |                 ^
2023-09-11T20:17:02,600   pgpipe/test_cython.c:3277:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:17:02,601    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:17:02,601         |                                           ^
2023-09-11T20:17:05,963   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so
2023-09-11T20:17:06,065   running build_scripts
2023-09-11T20:17:06,066   creating build/scripts-3.11
2023-09-11T20:17:06,067   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.11
2023-09-11T20:17:06,070   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.11
2023-09-11T20:17:06,073   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.11
2023-09-11T20:17:06,076   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.11
2023-09-11T20:17:06,078   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.11
2023-09-11T20:17:06,082   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.11
2023-09-11T20:17:06,084   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.11
2023-09-11T20:17:06,086   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.11
2023-09-11T20:17:06,088   copying and adjusting pgpipe/convert.py -> build/scripts-3.11
2023-09-11T20:17:06,090   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.11
2023-09-11T20:17:06,093   copying and adjusting pgpipe/admixture.py -> build/scripts-3.11
2023-09-11T20:17:06,095   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.11
2023-09-11T20:17:06,098   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.11
2023-09-11T20:17:06,100   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.11
2023-09-11T20:17:06,102   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.11
2023-09-11T20:17:06,104   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.11
2023-09-11T20:17:06,106   changing mode of build/scripts-3.11/vcf_filter.py from 644 to 755
2023-09-11T20:17:06,106   changing mode of build/scripts-3.11/vcf_calc.py from 644 to 755
2023-09-11T20:17:06,106   changing mode of build/scripts-3.11/vcf_split.py from 644 to 755
2023-09-11T20:17:06,107   changing mode of build/scripts-3.11/vcf_phase.py from 644 to 755
2023-09-11T20:17:06,107   changing mode of build/scripts-3.11/four_gamete.py from 644 to 755
2023-09-11T20:17:06,108   changing mode of build/scripts-3.11/stat_sampler.py from 644 to 755
2023-09-11T20:17:06,108   changing mode of build/scripts-3.11/bed_tasks.py from 644 to 755
2023-09-11T20:17:06,109   changing mode of build/scripts-3.11/informative_loci_filter.py from 644 to 755
2023-09-11T20:17:06,109   changing mode of build/scripts-3.11/convert.py from 644 to 755
2023-09-11T20:17:06,109   changing mode of build/scripts-3.11/vcf_to_ima.py from 644 to 755
2023-09-11T20:17:06,110   changing mode of build/scripts-3.11/admixture.py from 644 to 755
2023-09-11T20:17:06,110   changing mode of build/scripts-3.11/plink_ld.py from 644 to 755
2023-09-11T20:17:06,111   changing mode of build/scripts-3.11/ima3_wrapper.py from 644 to 755
2023-09-11T20:17:06,111   changing mode of build/scripts-3.11/eigenstrat_fstats.py from 644 to 755
2023-09-11T20:17:06,111   changing mode of build/scripts-3.11/vcf_liftover.py from 644 to 755
2023-09-11T20:17:06,112   changing mode of build/scripts-3.11/vcf_utilities.py from 644 to 755
2023-09-11T20:17:06,136   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-11T20:17:06,137   !!

2023-09-11T20:17:06,138           ********************************************************************************
2023-09-11T20:17:06,138           Please avoid running ``setup.py`` directly.
2023-09-11T20:17:06,139           Instead, use pypa/build, pypa/installer or other
2023-09-11T20:17:06,140           standards-based tools.

2023-09-11T20:17:06,141           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-11T20:17:06,141           ********************************************************************************

2023-09-11T20:17:06,143   !!
2023-09-11T20:17:06,143     self.initialize_options()
2023-09-11T20:17:06,162   installing to build/bdist.linux-armv7l/wheel
2023-09-11T20:17:06,162   running install
2023-09-11T20:17:06,186   running install_lib
2023-09-11T20:17:06,210   creating build/bdist.linux-armv7l
2023-09-11T20:17:06,210   creating build/bdist.linux-armv7l/wheel
2023-09-11T20:17:06,213   creating build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,214   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,217   copying build/lib.linux-armv7l-cpython-311/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,219   copying build/lib.linux-armv7l-cpython-311/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,221   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,224   copying build/lib.linux-armv7l-cpython-311/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,226   copying build/lib.linux-armv7l-cpython-311/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,228   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,235   copying build/lib.linux-armv7l-cpython-311/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,238   copying build/lib.linux-armv7l-cpython-311/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,240   copying build/lib.linux-armv7l-cpython-311/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,242   copying build/lib.linux-armv7l-cpython-311/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,245   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,246   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,249   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,252   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,255   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,258   copying build/lib.linux-armv7l-cpython-311/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,260   copying build/lib.linux-armv7l-cpython-311/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,261   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,264   copying build/lib.linux-armv7l-cpython-311/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,267   copying build/lib.linux-armv7l-cpython-311/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,269   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,272   copying build/lib.linux-armv7l-cpython-311/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,273   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,276   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,279   copying build/lib.linux-armv7l-cpython-311/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,281   copying build/lib.linux-armv7l-cpython-311/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,283   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,285   copying build/lib.linux-armv7l-cpython-311/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,287   copying build/lib.linux-armv7l-cpython-311/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,289   copying build/lib.linux-armv7l-cpython-311/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,291   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,293   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,295   copying build/lib.linux-armv7l-cpython-311/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,298   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,301   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,303   copying build/lib.linux-armv7l-cpython-311/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,305   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,307   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,310   copying build/lib.linux-armv7l-cpython-311/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,312   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,314   copying build/lib.linux-armv7l-cpython-311/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,316   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,318   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,321   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,323   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,325   copying build/lib.linux-armv7l-cpython-311/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,327   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,330   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,332   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,334   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,336   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,338   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,340   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:17:06,347   running install_egg_info
2023-09-11T20:17:06,387   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.1-py3.11.egg-info
2023-09-11T20:17:06,400   running install_scripts
2023-09-11T20:17:06,401   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data
2023-09-11T20:17:06,402   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,403   copying build/scripts-3.11/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,407   copying build/scripts-3.11/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,410   copying build/scripts-3.11/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,413   copying build/scripts-3.11/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,416   copying build/scripts-3.11/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,419   copying build/scripts-3.11/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,422   copying build/scripts-3.11/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,426   copying build/scripts-3.11/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,429   copying build/scripts-3.11/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,432   copying build/scripts-3.11/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,435   copying build/scripts-3.11/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,438   copying build/scripts-3.11/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,441   copying build/scripts-3.11/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,444   copying build/scripts-3.11/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,447   copying build/scripts-3.11/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,451   copying build/scripts-3.11/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts
2023-09-11T20:17:06,454   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/admixture.py to 755
2023-09-11T20:17:06,454   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_to_ima.py to 755
2023-09-11T20:17:06,455   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/informative_loci_filter.py to 755
2023-09-11T20:17:06,455   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/four_gamete.py to 755
2023-09-11T20:17:06,455   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/ima3_wrapper.py to 755
2023-09-11T20:17:06,456   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_filter.py to 755
2023-09-11T20:17:06,456   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_phase.py to 755
2023-09-11T20:17:06,457   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/plink_ld.py to 755
2023-09-11T20:17:06,457   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/bed_tasks.py to 755
2023-09-11T20:17:06,458   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/stat_sampler.py to 755
2023-09-11T20:17:06,458   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/convert.py to 755
2023-09-11T20:17:06,459   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_liftover.py to 755
2023-09-11T20:17:06,459   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py to 755
2023-09-11T20:17:06,460   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_split.py to 755
2023-09-11T20:17:06,460   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_calc.py to 755
2023-09-11T20:17:06,461   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.data/scripts/vcf_utilities.py to 755
2023-09-11T20:17:06,510   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.1.dist-info/WHEEL
2023-09-11T20:17:06,513   creating '/tmp/pip-wheel-mnk_b033/py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-11T20:17:06,516   adding 'pgpipe/__init__.py'
2023-09-11T20:17:06,518   adding 'pgpipe/admixtools.py'
2023-09-11T20:17:06,521   adding 'pgpipe/admixture.py'
2023-09-11T20:17:06,523   adding 'pgpipe/argparse_sets.py'
2023-09-11T20:17:06,526   adding 'pgpipe/bcftools.py'
2023-09-11T20:17:06,528   adding 'pgpipe/beagle.py'
2023-09-11T20:17:06,530   adding 'pgpipe/bed_invert.py'
2023-09-11T20:17:06,532   adding 'pgpipe/bed_tasks.py'
2023-09-11T20:17:06,534   adding 'pgpipe/bedtools.py'
2023-09-11T20:17:06,536   adding 'pgpipe/convert.py'
2023-09-11T20:17:06,539   adding 'pgpipe/eigenstrat_fstats.py'
2023-09-11T20:17:06,540   adding 'pgpipe/extend_loci.py'
2023-09-11T20:17:06,541   adding 'pgpipe/fasta.py'
2023-09-11T20:17:06,543   adding 'pgpipe/fasta_utilities.py'
2023-09-11T20:17:06,544   adding 'pgpipe/filter_single_vcf.py'
2023-09-11T20:17:06,549   adding 'pgpipe/four_gamete.py'
2023-09-11T20:17:06,552   adding 'pgpipe/genome_region.py'
2023-09-11T20:17:06,554   adding 'pgpipe/get_nonmissing_chunks.py'
2023-09-11T20:17:06,555   adding 'pgpipe/graph_plotter.py'
2023-09-11T20:17:06,557   adding 'pgpipe/ima3_wrapper.py'
2023-09-11T20:17:06,559   adding 'pgpipe/ima_priors.py'
2023-09-11T20:17:06,560   adding 'pgpipe/ima_to_treemix.py'
2023-09-11T20:17:06,562   adding 'pgpipe/informative_loci_filter.py'
2023-09-11T20:17:06,564   adding 'pgpipe/logging_module.py'
2023-09-11T20:17:06,565   adding 'pgpipe/min_pop_filter.py'
2023-09-11T20:17:06,567   adding 'pgpipe/model.py'
2023-09-11T20:17:06,570   adding 'pgpipe/model_creator.py'
2023-09-11T20:17:06,572   adding 'pgpipe/model_sampler.py'
2023-09-11T20:17:06,573   adding 'pgpipe/parse_functions.py'
2023-09-11T20:17:06,575   adding 'pgpipe/picard.py'
2023-09-11T20:17:06,577   adding 'pgpipe/plink.py'
2023-09-11T20:17:06,580   adding 'pgpipe/plink_ld.py'
2023-09-11T20:17:06,582   adding 'pgpipe/shapeit.py'
2023-09-11T20:17:06,583   adding 'pgpipe/site_stats.py'
2023-09-11T20:17:06,586   adding 'pgpipe/stat_sampler.py'
2023-09-11T20:17:06,587   adding 'pgpipe/subtract_bed.py'
2023-09-11T20:17:06,612   adding 'pgpipe/test_cython.c'
2023-09-11T20:17:06,654   adding 'pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so'
2023-09-11T20:17:06,656   adding 'pgpipe/test_cython.pyx'
2023-09-11T20:17:06,660   adding 'pgpipe/vcf_calc.py'
2023-09-11T20:17:06,663   adding 'pgpipe/vcf_filter.py'
2023-09-11T20:17:06,667   adding 'pgpipe/vcf_filter_bcftools.py'
2023-09-11T20:17:06,671   adding 'pgpipe/vcf_filter_vcftools.py'
2023-09-11T20:17:06,673   adding 'pgpipe/vcf_liftover.py'
2023-09-11T20:17:06,677   adding 'pgpipe/vcf_phase.py'
2023-09-11T20:17:06,681   adding 'pgpipe/vcf_reader_func.py'
2023-09-11T20:17:06,683   adding 'pgpipe/vcf_ref_to_seq.py'
2023-09-11T20:17:06,685   adding 'pgpipe/vcf_sampler.py'
2023-09-11T20:17:06,688   adding 'pgpipe/vcf_split.py'
2023-09-11T20:17:06,690   adding 'pgpipe/vcf_split_pysam.py'
2023-09-11T20:17:06,694   adding 'pgpipe/vcf_to_ima.py'
2023-09-11T20:17:06,696   adding 'pgpipe/vcf_to_treemix.py'
2023-09-11T20:17:06,698   adding 'pgpipe/vcf_utilities.py'
2023-09-11T20:17:06,701   adding 'pgpipe/vcftools.py'
2023-09-11T20:17:06,704   adding 'py_popgen-0.1.1.data/scripts/admixture.py'
2023-09-11T20:17:06,706   adding 'py_popgen-0.1.1.data/scripts/bed_tasks.py'
2023-09-11T20:17:06,708   adding 'py_popgen-0.1.1.data/scripts/convert.py'
2023-09-11T20:17:06,711   adding 'py_popgen-0.1.1.data/scripts/eigenstrat_fstats.py'
2023-09-11T20:17:06,716   adding 'py_popgen-0.1.1.data/scripts/four_gamete.py'
2023-09-11T20:17:06,718   adding 'py_popgen-0.1.1.data/scripts/ima3_wrapper.py'
2023-09-11T20:17:06,720   adding 'py_popgen-0.1.1.data/scripts/informative_loci_filter.py'
2023-09-11T20:17:06,722   adding 'py_popgen-0.1.1.data/scripts/plink_ld.py'
2023-09-11T20:17:06,725   adding 'py_popgen-0.1.1.data/scripts/stat_sampler.py'
2023-09-11T20:17:06,728   adding 'py_popgen-0.1.1.data/scripts/vcf_calc.py'
2023-09-11T20:17:06,732   adding 'py_popgen-0.1.1.data/scripts/vcf_filter.py'
2023-09-11T20:17:06,734   adding 'py_popgen-0.1.1.data/scripts/vcf_liftover.py'
2023-09-11T20:17:06,739   adding 'py_popgen-0.1.1.data/scripts/vcf_phase.py'
2023-09-11T20:17:06,741   adding 'py_popgen-0.1.1.data/scripts/vcf_split.py'
2023-09-11T20:17:06,745   adding 'py_popgen-0.1.1.data/scripts/vcf_to_ima.py'
2023-09-11T20:17:06,748   adding 'py_popgen-0.1.1.data/scripts/vcf_utilities.py'
2023-09-11T20:17:06,750   adding 'py_popgen-0.1.1.dist-info/METADATA'
2023-09-11T20:17:06,751   adding 'py_popgen-0.1.1.dist-info/WHEEL'
2023-09-11T20:17:06,751   adding 'py_popgen-0.1.1.dist-info/top_level.txt'
2023-09-11T20:17:06,753   adding 'py_popgen-0.1.1.dist-info/RECORD'
2023-09-11T20:17:06,759   removing build/bdist.linux-armv7l/wheel
2023-09-11T20:17:06,918   Building wheel for py-popgen (setup.py): finished with status 'done'
2023-09-11T20:17:06,925   Created wheel for py-popgen: filename=py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl size=385478 sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8
2023-09-11T20:17:06,926   Stored in directory: /tmp/pip-ephem-wheel-cache-fqruzrmu/wheels/aa/1f/0f/aec8ac9097611b597c7bce8dd7c3657f93f96dcf8c3b312fe9
2023-09-11T20:17:06,937 Successfully built py-popgen
2023-09-11T20:17:06,951 Removed build tracker: '/tmp/pip-build-tracker-9kgy02f_'