2023-09-11T20:23:42,668 Created temporary directory: /tmp/pip-build-tracker-qo3xvg4z
2023-09-11T20:23:42,670 Initialized build tracking at /tmp/pip-build-tracker-qo3xvg4z
2023-09-11T20:23:42,670 Created build tracker: /tmp/pip-build-tracker-qo3xvg4z
2023-09-11T20:23:42,671 Entered build tracker: /tmp/pip-build-tracker-qo3xvg4z
2023-09-11T20:23:42,672 Created temporary directory: /tmp/pip-wheel-c_bkgasw
2023-09-11T20:23:42,675 Created temporary directory: /tmp/pip-ephem-wheel-cache-7uy_tjcw
2023-09-11T20:23:42,699 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-11T20:23:42,705 2 location(s) to search for versions of py-popgen:
2023-09-11T20:23:42,705 * https://pypi.org/simple/py-popgen/
2023-09-11T20:23:42,705 * https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:23:42,707 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2023-09-11T20:23:42,709 Getting page https://pypi.org/simple/py-popgen/
2023-09-11T20:23:42,712 Found index url https://pypi.org/simple/
2023-09-11T20:23:42,868 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2023-09-11T20:23:42,872   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2023-09-11T20:23:42,873   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2023-09-11T20:23:42,875   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2023-09-11T20:23:42,877   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2023-09-11T20:23:42,878   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2023-09-11T20:23:42,880   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2023-09-11T20:23:42,882   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2023-09-11T20:23:42,883   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2023-09-11T20:23:42,885   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2023-09-11T20:23:42,887   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2023-09-11T20:23:42,888   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2023-09-11T20:23:42,889   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2023-09-11T20:23:42,890   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:42,891   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2023-09-11T20:23:42,892   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2023-09-11T20:23:42,893   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2023-09-11T20:23:42,894 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:23:42,895 Getting page https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:23:42,896 Found index url https://www.piwheels.org/simple/
2023-09-11T20:23:43,159 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2023-09-11T20:23:43,168   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:43,169   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:43,170   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:43,170   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:43,171   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-11T20:23:43,172   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,172   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,173   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,174   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,175   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,176   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,176   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,176   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,177   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,178   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,178   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,179   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,179   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,180   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,181   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,182   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,182   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,182   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,183   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv7l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,183   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv6l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,184   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,185   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,185   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,186   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-11T20:23:43,187   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:23:43,188   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2023-09-11T20:23:43,190 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2023-09-11T20:23:43,190 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2023-09-11T20:23:43,212 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2023-09-11T20:23:43,234 Collecting py-popgen==0.1.2
2023-09-11T20:23:43,236   Created temporary directory: /tmp/pip-unpack-4d5lnalp
2023-09-11T20:23:44,318   Downloading py-popgen-0.1.2.tar.gz (27.2 MB)
2023-09-11T20:23:54,444   Added py-popgen==0.1.2 from https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-qo3xvg4z'
2023-09-11T20:23:54,445   Running setup.py (path:/tmp/pip-wheel-c_bkgasw/py-popgen_7e6ce4264029414da908727e8a1a8a23/setup.py) egg_info for package py-popgen
2023-09-11T20:23:54,446   Created temporary directory: /tmp/pip-pip-egg-info-08vhuu9y
2023-09-11T20:23:54,447   Preparing metadata (setup.py): started
2023-09-11T20:23:54,448   Running command python setup.py egg_info
2023-09-11T20:23:56,623   /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-c_bkgasw/py-popgen_7e6ce4264029414da908727e8a1a8a23/pgpipe/test_cython.pyx
2023-09-11T20:23:56,623     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-11T20:23:56,902   Compiling pgpipe/test_cython.pyx because it changed.
2023-09-11T20:23:56,902   [1/1] Cythonizing pgpipe/test_cython.pyx
2023-09-11T20:23:57,365   running egg_info
2023-09-11T20:23:57,366   creating /tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info
2023-09-11T20:23:57,390   writing /tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/PKG-INFO
2023-09-11T20:23:57,393   writing dependency_links to /tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/dependency_links.txt
2023-09-11T20:23:57,395   writing requirements to /tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/requires.txt
2023-09-11T20:23:57,396   writing top-level names to /tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/top_level.txt
2023-09-11T20:23:57,397   writing manifest file '/tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:23:57,520   reading manifest file '/tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:23:57,522   reading manifest template 'MANIFEST.in'
2023-09-11T20:23:57,534   writing manifest file '/tmp/pip-pip-egg-info-08vhuu9y/py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:23:57,764   Preparing metadata (setup.py): finished with status 'done'
2023-09-11T20:23:57,769   Source in /tmp/pip-wheel-c_bkgasw/py-popgen_7e6ce4264029414da908727e8a1a8a23 has version 0.1.2, which satisfies requirement py-popgen==0.1.2 from https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz
2023-09-11T20:23:57,770   Removed py-popgen==0.1.2 from https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-qo3xvg4z'
2023-09-11T20:23:57,778 Created temporary directory: /tmp/pip-unpack-wpljjcu0
2023-09-11T20:23:57,779 Created temporary directory: /tmp/pip-unpack-yk5zaz9_
2023-09-11T20:23:57,788 Building wheels for collected packages: py-popgen
2023-09-11T20:23:57,792   Created temporary directory: /tmp/pip-wheel-rw5t9e2s
2023-09-11T20:23:57,793   Building wheel for py-popgen (setup.py): started
2023-09-11T20:23:57,794   Destination directory: /tmp/pip-wheel-rw5t9e2s
2023-09-11T20:23:57,795   Running command python setup.py bdist_wheel
2023-09-11T20:23:59,271   running bdist_wheel
2023-09-11T20:23:59,366   running build
2023-09-11T20:23:59,367   running build_py
2023-09-11T20:23:59,394   creating build
2023-09-11T20:23:59,395   creating build/lib.linux-armv7l-cpython-311
2023-09-11T20:23:59,396   creating build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,397   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,399   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,401   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,403   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,406   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,408   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,410   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,412   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,415   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,417   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,419   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,421   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,422   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,425   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,428   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,430   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,432   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,434   copying pgpipe/vcf_filter_bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,437   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,439   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,441   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,442   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,445   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,446   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,449   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,451   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,453   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,456   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,459   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,461   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,463   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,465   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,467   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,469   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,471   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,474   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,476   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,478   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,480   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,482   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,484   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,487   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,489   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,491   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,494   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,495   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,497   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,501   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,504   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,506   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,508   copying pgpipe/bed_tasks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,510   running egg_info
2023-09-11T20:23:59,564   writing py_popgen.egg-info/PKG-INFO
2023-09-11T20:23:59,567   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2023-09-11T20:23:59,568   writing requirements to py_popgen.egg-info/requires.txt
2023-09-11T20:23:59,569   writing top-level names to py_popgen.egg-info/top_level.txt
2023-09-11T20:23:59,597   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:23:59,600   reading manifest template 'MANIFEST.in'
2023-09-11T20:23:59,617   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-11T20:23:59,620   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,626   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,630   running build_ext
2023-09-11T20:23:59,637   building 'pgpipe.test_cython' extension
2023-09-11T20:23:59,637   creating build/temp.linux-armv7l-cpython-311
2023-09-11T20:23:59,638   creating build/temp.linux-armv7l-cpython-311/pgpipe
2023-09-11T20:23:59,639   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o
2023-09-11T20:24:00,016   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2023-09-11T20:24:00,018   pgpipe/test_cython.c:2802:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:24:00,018    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:24:00,019         |                 ^
2023-09-11T20:24:00,020   pgpipe/test_cython.c:2802:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:24:00,021    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-11T20:24:00,022         |                                           ^
2023-09-11T20:24:00,030   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2023-09-11T20:24:00,033   pgpipe/test_cython.c:3277:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:24:00,033    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:24:00,034         |                 ^
2023-09-11T20:24:00,035   pgpipe/test_cython.c:3277:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-11T20:24:00,036    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-11T20:24:00,037         |                                           ^
2023-09-11T20:24:03,380   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so
2023-09-11T20:24:03,482   running build_scripts
2023-09-11T20:24:03,483   creating build/scripts-3.11
2023-09-11T20:24:03,484   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.11
2023-09-11T20:24:03,487   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.11
2023-09-11T20:24:03,490   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.11
2023-09-11T20:24:03,492   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.11
2023-09-11T20:24:03,496   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.11
2023-09-11T20:24:03,501   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.11
2023-09-11T20:24:03,503   copying and adjusting pgpipe/bed_tasks.py -> build/scripts-3.11
2023-09-11T20:24:03,505   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.11
2023-09-11T20:24:03,507   copying and adjusting pgpipe/convert.py -> build/scripts-3.11
2023-09-11T20:24:03,509   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.11
2023-09-11T20:24:03,511   copying and adjusting pgpipe/admixture.py -> build/scripts-3.11
2023-09-11T20:24:03,514   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.11
2023-09-11T20:24:03,516   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.11
2023-09-11T20:24:03,518   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.11
2023-09-11T20:24:03,521   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.11
2023-09-11T20:24:03,523   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.11
2023-09-11T20:24:03,525   changing mode of build/scripts-3.11/vcf_filter.py from 644 to 755
2023-09-11T20:24:03,525   changing mode of build/scripts-3.11/vcf_calc.py from 644 to 755
2023-09-11T20:24:03,526   changing mode of build/scripts-3.11/vcf_split.py from 644 to 755
2023-09-11T20:24:03,526   changing mode of build/scripts-3.11/vcf_phase.py from 644 to 755
2023-09-11T20:24:03,527   changing mode of build/scripts-3.11/four_gamete.py from 644 to 755
2023-09-11T20:24:03,527   changing mode of build/scripts-3.11/stat_sampler.py from 644 to 755
2023-09-11T20:24:03,528   changing mode of build/scripts-3.11/bed_tasks.py from 644 to 755
2023-09-11T20:24:03,528   changing mode of build/scripts-3.11/informative_loci_filter.py from 644 to 755
2023-09-11T20:24:03,529   changing mode of build/scripts-3.11/convert.py from 644 to 755
2023-09-11T20:24:03,529   changing mode of build/scripts-3.11/vcf_to_ima.py from 644 to 755
2023-09-11T20:24:03,530   changing mode of build/scripts-3.11/admixture.py from 644 to 755
2023-09-11T20:24:03,530   changing mode of build/scripts-3.11/plink_ld.py from 644 to 755
2023-09-11T20:24:03,531   changing mode of build/scripts-3.11/ima3_wrapper.py from 644 to 755
2023-09-11T20:24:03,531   changing mode of build/scripts-3.11/eigenstrat_fstats.py from 644 to 755
2023-09-11T20:24:03,532   changing mode of build/scripts-3.11/vcf_liftover.py from 644 to 755
2023-09-11T20:24:03,532   changing mode of build/scripts-3.11/vcf_utilities.py from 644 to 755
2023-09-11T20:24:03,556   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-11T20:24:03,557   !!

2023-09-11T20:24:03,558           ********************************************************************************
2023-09-11T20:24:03,559           Please avoid running ``setup.py`` directly.
2023-09-11T20:24:03,560           Instead, use pypa/build, pypa/installer or other
2023-09-11T20:24:03,560           standards-based tools.

2023-09-11T20:24:03,561           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-11T20:24:03,562           ********************************************************************************

2023-09-11T20:24:03,563   !!
2023-09-11T20:24:03,564     self.initialize_options()
2023-09-11T20:24:03,584   installing to build/bdist.linux-armv7l/wheel
2023-09-11T20:24:03,584   running install
2023-09-11T20:24:03,608   running install_lib
2023-09-11T20:24:03,632   creating build/bdist.linux-armv7l
2023-09-11T20:24:03,632   creating build/bdist.linux-armv7l/wheel
2023-09-11T20:24:03,635   creating build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,636   copying build/lib.linux-armv7l-cpython-311/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,638   copying build/lib.linux-armv7l-cpython-311/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,640   copying build/lib.linux-armv7l-cpython-311/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,643   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,646   copying build/lib.linux-armv7l-cpython-311/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,648   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,650   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,652   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,655   copying build/lib.linux-armv7l-cpython-311/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,657   copying build/lib.linux-armv7l-cpython-311/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,659   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,666   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,668   copying build/lib.linux-armv7l-cpython-311/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,670   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,673   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,675   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,678   copying build/lib.linux-armv7l-cpython-311/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,680   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,684   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,687   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,689   copying build/lib.linux-armv7l-cpython-311/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,691   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,693   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,695   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,697   copying build/lib.linux-armv7l-cpython-311/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,699   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,702   copying build/lib.linux-armv7l-cpython-311/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,704   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,707   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,709   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,712   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,714   copying build/lib.linux-armv7l-cpython-311/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,717   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,719   copying build/lib.linux-armv7l-cpython-311/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,722   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,723   copying build/lib.linux-armv7l-cpython-311/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,726   copying build/lib.linux-armv7l-cpython-311/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,728   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,731   copying build/lib.linux-armv7l-cpython-311/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,732   copying build/lib.linux-armv7l-cpython-311/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,734   copying build/lib.linux-armv7l-cpython-311/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,736   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,738   copying build/lib.linux-armv7l-cpython-311/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,741   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,743   copying build/lib.linux-armv7l-cpython-311/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,745   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,748   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,750   copying build/lib.linux-armv7l-cpython-311/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,751   copying build/lib.linux-armv7l-cpython-311/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,753   copying build/lib.linux-armv7l-cpython-311/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,756   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,757   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,760   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,762   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_tasks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-11T20:24:03,764   running install_egg_info
2023-09-11T20:24:03,794   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.2-py3.11.egg-info
2023-09-11T20:24:03,804   running install_scripts
2023-09-11T20:24:03,805   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data
2023-09-11T20:24:03,805   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,806   copying build/scripts-3.11/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,809   copying build/scripts-3.11/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,812   copying build/scripts-3.11/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,814   copying build/scripts-3.11/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,816   copying build/scripts-3.11/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,819   copying build/scripts-3.11/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,822   copying build/scripts-3.11/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,824   copying build/scripts-3.11/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,827   copying build/scripts-3.11/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,829   copying build/scripts-3.11/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,832   copying build/scripts-3.11/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,835   copying build/scripts-3.11/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,837   copying build/scripts-3.11/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,839   copying build/scripts-3.11/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,842   copying build/scripts-3.11/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,844   copying build/scripts-3.11/bed_tasks.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts
2023-09-11T20:24:03,846   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/four_gamete.py to 755
2023-09-11T20:24:03,847   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/stat_sampler.py to 755
2023-09-11T20:24:03,847   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/ima3_wrapper.py to 755
2023-09-11T20:24:03,848   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_split.py to 755
2023-09-11T20:24:03,848   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_phase.py to 755
2023-09-11T20:24:03,849   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/admixture.py to 755
2023-09-11T20:24:03,849   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_calc.py to 755
2023-09-11T20:24:03,850   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/eigenstrat_fstats.py to 755
2023-09-11T20:24:03,851   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_liftover.py to 755
2023-09-11T20:24:03,851   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_filter.py to 755
2023-09-11T20:24:03,852   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_to_ima.py to 755
2023-09-11T20:24:03,852   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/vcf_utilities.py to 755
2023-09-11T20:24:03,853   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/informative_loci_filter.py to 755
2023-09-11T20:24:03,853   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/convert.py to 755
2023-09-11T20:24:03,854   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/plink_ld.py to 755
2023-09-11T20:24:03,854   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.data/scripts/bed_tasks.py to 755
2023-09-11T20:24:03,903   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.2.dist-info/WHEEL
2023-09-11T20:24:03,906   creating '/tmp/pip-wheel-rw5t9e2s/py_popgen-0.1.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-11T20:24:03,908   adding 'pgpipe/__init__.py'
2023-09-11T20:24:03,911   adding 'pgpipe/admixtools.py'
2023-09-11T20:24:03,913   adding 'pgpipe/admixture.py'
2023-09-11T20:24:03,914   adding 'pgpipe/argparse_sets.py'
2023-09-11T20:24:03,917   adding 'pgpipe/bcftools.py'
2023-09-11T20:24:03,918   adding 'pgpipe/beagle.py'
2023-09-11T20:24:03,920   adding 'pgpipe/bed_invert.py'
2023-09-11T20:24:03,922   adding 'pgpipe/bed_tasks.py'
2023-09-11T20:24:03,923   adding 'pgpipe/bedtools.py'
2023-09-11T20:24:03,925   adding 'pgpipe/convert.py'
2023-09-11T20:24:03,928   adding 'pgpipe/eigenstrat_fstats.py'
2023-09-11T20:24:03,930   adding 'pgpipe/extend_loci.py'
2023-09-11T20:24:03,931   adding 'pgpipe/fasta.py'
2023-09-11T20:24:03,932   adding 'pgpipe/fasta_utilities.py'
2023-09-11T20:24:03,934   adding 'pgpipe/filter_single_vcf.py'
2023-09-11T20:24:03,938   adding 'pgpipe/four_gamete.py'
2023-09-11T20:24:03,941   adding 'pgpipe/genome_region.py'
2023-09-11T20:24:03,943   adding 'pgpipe/get_nonmissing_chunks.py'
2023-09-11T20:24:03,945   adding 'pgpipe/graph_plotter.py'
2023-09-11T20:24:03,947   adding 'pgpipe/ima3_wrapper.py'
2023-09-11T20:24:03,948   adding 'pgpipe/ima_priors.py'
2023-09-11T20:24:03,949   adding 'pgpipe/ima_to_treemix.py'
2023-09-11T20:24:03,951   adding 'pgpipe/informative_loci_filter.py'
2023-09-11T20:24:03,953   adding 'pgpipe/logging_module.py'
2023-09-11T20:24:03,954   adding 'pgpipe/min_pop_filter.py'
2023-09-11T20:24:03,956   adding 'pgpipe/model.py'
2023-09-11T20:24:03,958   adding 'pgpipe/model_creator.py'
2023-09-11T20:24:03,960   adding 'pgpipe/model_sampler.py'
2023-09-11T20:24:03,962   adding 'pgpipe/parse_functions.py'
2023-09-11T20:24:03,963   adding 'pgpipe/picard.py'
2023-09-11T20:24:03,966   adding 'pgpipe/plink.py'
2023-09-11T20:24:03,968   adding 'pgpipe/plink_ld.py'
2023-09-11T20:24:03,970   adding 'pgpipe/shapeit.py'
2023-09-11T20:24:03,972   adding 'pgpipe/site_stats.py'
2023-09-11T20:24:03,974   adding 'pgpipe/stat_sampler.py'
2023-09-11T20:24:03,975   adding 'pgpipe/subtract_bed.py'
2023-09-11T20:24:04,001   adding 'pgpipe/test_cython.c'
2023-09-11T20:24:04,043   adding 'pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so'
2023-09-11T20:24:04,045   adding 'pgpipe/test_cython.pyx'
2023-09-11T20:24:04,049   adding 'pgpipe/vcf_calc.py'
2023-09-11T20:24:04,053   adding 'pgpipe/vcf_filter.py'
2023-09-11T20:24:04,057   adding 'pgpipe/vcf_filter_bcftools.py'
2023-09-11T20:24:04,060   adding 'pgpipe/vcf_filter_vcftools.py'
2023-09-11T20:24:04,062   adding 'pgpipe/vcf_liftover.py'
2023-09-11T20:24:04,067   adding 'pgpipe/vcf_phase.py'
2023-09-11T20:24:04,070   adding 'pgpipe/vcf_reader_func.py'
2023-09-11T20:24:04,072   adding 'pgpipe/vcf_ref_to_seq.py'
2023-09-11T20:24:04,075   adding 'pgpipe/vcf_sampler.py'
2023-09-11T20:24:04,078   adding 'pgpipe/vcf_split.py'
2023-09-11T20:24:04,080   adding 'pgpipe/vcf_split_pysam.py'
2023-09-11T20:24:04,084   adding 'pgpipe/vcf_to_ima.py'
2023-09-11T20:24:04,086   adding 'pgpipe/vcf_to_treemix.py'
2023-09-11T20:24:04,088   adding 'pgpipe/vcf_utilities.py'
2023-09-11T20:24:04,091   adding 'pgpipe/vcftools.py'
2023-09-11T20:24:04,094   adding 'py_popgen-0.1.2.data/scripts/admixture.py'
2023-09-11T20:24:04,096   adding 'py_popgen-0.1.2.data/scripts/bed_tasks.py'
2023-09-11T20:24:04,099   adding 'py_popgen-0.1.2.data/scripts/convert.py'
2023-09-11T20:24:04,101   adding 'py_popgen-0.1.2.data/scripts/eigenstrat_fstats.py'
2023-09-11T20:24:04,106   adding 'py_popgen-0.1.2.data/scripts/four_gamete.py'
2023-09-11T20:24:04,108   adding 'py_popgen-0.1.2.data/scripts/ima3_wrapper.py'
2023-09-11T20:24:04,110   adding 'py_popgen-0.1.2.data/scripts/informative_loci_filter.py'
2023-09-11T20:24:04,113   adding 'py_popgen-0.1.2.data/scripts/plink_ld.py'
2023-09-11T20:24:04,116   adding 'py_popgen-0.1.2.data/scripts/stat_sampler.py'
2023-09-11T20:24:04,119   adding 'py_popgen-0.1.2.data/scripts/vcf_calc.py'
2023-09-11T20:24:04,123   adding 'py_popgen-0.1.2.data/scripts/vcf_filter.py'
2023-09-11T20:24:04,125   adding 'py_popgen-0.1.2.data/scripts/vcf_liftover.py'
2023-09-11T20:24:04,129   adding 'py_popgen-0.1.2.data/scripts/vcf_phase.py'
2023-09-11T20:24:04,132   adding 'py_popgen-0.1.2.data/scripts/vcf_split.py'
2023-09-11T20:24:04,136   adding 'py_popgen-0.1.2.data/scripts/vcf_to_ima.py'
2023-09-11T20:24:04,138   adding 'py_popgen-0.1.2.data/scripts/vcf_utilities.py'
2023-09-11T20:24:04,140   adding 'py_popgen-0.1.2.dist-info/METADATA'
2023-09-11T20:24:04,141   adding 'py_popgen-0.1.2.dist-info/WHEEL'
2023-09-11T20:24:04,142   adding 'py_popgen-0.1.2.dist-info/top_level.txt'
2023-09-11T20:24:04,143   adding 'py_popgen-0.1.2.dist-info/RECORD'
2023-09-11T20:24:04,149   removing build/bdist.linux-armv7l/wheel
2023-09-11T20:24:04,307   Building wheel for py-popgen (setup.py): finished with status 'done'
2023-09-11T20:24:04,314   Created wheel for py-popgen: filename=py_popgen-0.1.2-cp311-cp311-linux_armv7l.whl size=385477 sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85
2023-09-11T20:24:04,315   Stored in directory: /tmp/pip-ephem-wheel-cache-7uy_tjcw/wheels/1c/b7/64/81a991983614a2e31e17c27235d1c7f8069a7aee0d5320502b
2023-09-11T20:24:04,326 Successfully built py-popgen
2023-09-11T20:24:04,338 Removed build tracker: '/tmp/pip-build-tracker-qo3xvg4z'