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https://files.pythonhosted.org/packages/b0/60/38fa4b80f4ae92a8fa2167a156c2322149c5b4eb50f89df0c56bc634ce48/pycoalescence-1.2.9.post1.tar.gz (from https://pypi.org/simple/pycoalescence/), version: 1.2.9.post1 2023-09-11T23:25:52,744 Found link https://files.pythonhosted.org/packages/60/05/d06788d9887dfd8897619154a9dd4f000b7cd3e5e6247616a10ef36a18d5/pycoalescence-1.2.9.post2.tar.gz (from https://pypi.org/simple/pycoalescence/), version: 1.2.9.post2 2023-09-11T23:25:52,745 Found link https://files.pythonhosted.org/packages/33/85/5dab7b0138a13280254e4021160e78ff68b2ea3af8fba576e26968ec504d/pycoalescence-1.2.9.post3.tar.gz (from https://pypi.org/simple/pycoalescence/), version: 1.2.9.post3 2023-09-11T23:25:52,745 Fetching project page and analyzing links: https://www.piwheels.org/simple/pycoalescence/ 2023-09-11T23:25:52,746 Getting page https://www.piwheels.org/simple/pycoalescence/ 2023-09-11T23:25:52,747 Found index url https://www.piwheels.org/simple/ 2023-09-11T23:25:54,386 Fetched page https://www.piwheels.org/simple/pycoalescence/ as text/html 2023-09-11T23:25:54,388 Skipping link: not a file: https://www.piwheels.org/simple/pycoalescence/ 2023-09-11T23:25:54,389 Skipping link: not a file: https://pypi.org/simple/pycoalescence/ 2023-09-11T23:25:54,439 Given no hashes to check 1 links for project 'pycoalescence': discarding no candidates 2023-09-11T23:25:54,473 Collecting pycoalescence==1.2.7.post6 2023-09-11T23:25:54,476 Created temporary directory: /tmp/pip-unpack-w8tdu__n 2023-09-11T23:25:54,695 Downloading pycoalescence-1.2.7.post6.tar.gz (329 kB) 2023-09-11T23:25:55,046 Added pycoalescence==1.2.7.post6 from https://files.pythonhosted.org/packages/88/41/b0733d6e992156bc4366b8c5f04c024ac96f049984c2c69fdba2abd7fd20/pycoalescence-1.2.7.post6.tar.gz to build tracker '/tmp/pip-build-tracker-kyl8hu4s' 2023-09-11T23:25:55,047 Running setup.py (path:/tmp/pip-wheel-484bqmyt/pycoalescence_27acedaeef6f4678ba1d81d79a407c50/setup.py) egg_info for package pycoalescence 2023-09-11T23:25:55,048 Created temporary directory: /tmp/pip-pip-egg-info-hanr0kl6 2023-09-11T23:25:55,049 Preparing metadata (setup.py): started 2023-09-11T23:25:55,050 Running command python setup.py egg_info 2023-09-11T23:25:55,743 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:55,743 !! 2023-09-11T23:25:55,745 ******************************************************************************** 2023-09-11T23:25:55,745 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:55,746 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:55,747 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:55,748 or your builds will no longer be supported. 2023-09-11T23:25:55,749 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:55,749 ******************************************************************************** 2023-09-11T23:25:55,751 !! 2023-09-11T23:25:55,751 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:56,107 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:56,108 !! 2023-09-11T23:25:56,109 ******************************************************************************** 2023-09-11T23:25:56,110 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:56,110 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:56,112 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:56,112 or your builds will no longer be supported. 2023-09-11T23:25:56,114 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:56,114 ******************************************************************************** 2023-09-11T23:25:56,115 !! 2023-09-11T23:25:56,115 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:56,147 INFO:root:running egg_info 2023-09-11T23:25:56,148 INFO:root:creating /tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info 2023-09-11T23:25:56,172 INFO:root:writing /tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/PKG-INFO 2023-09-11T23:25:56,177 INFO:root:writing dependency_links to /tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/dependency_links.txt 2023-09-11T23:25:56,179 INFO:root:writing requirements to /tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/requires.txt 2023-09-11T23:25:56,180 INFO:root:writing top-level names to /tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/top_level.txt 2023-09-11T23:25:56,182 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/SOURCES.txt' 2023-09-11T23:25:56,260 INFO:root:reading manifest file '/tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/SOURCES.txt' 2023-09-11T23:25:56,261 INFO:root:reading manifest template 'MANIFEST.in' 2023-09-11T23:25:56,264 WARNING:root:warning: no directories found matching 'pycoalescence/sample' 2023-09-11T23:25:56,265 WARNING:root:warning: no files found matching 'pycoalescence/lib/configure' 2023-09-11T23:25:56,266 WARNING:root:warning: no files found matching 'pycoalescence/lib/Makefile' 2023-09-11T23:25:56,370 WARNING:root:warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-11T23:25:56,371 WARNING:root:warning: no previously-included files found matching 'pycoalescence/lib/necsim/main.cpp' 2023-09-11T23:25:56,372 WARNING:root:no previously-included directories found matching 'pycoalescence/lib/cmake-*' 2023-09-11T23:25:56,372 WARNING:root:no previously-included directories found matching 'pycoalescence/lib/necsim/cmake-*' 2023-09-11T23:25:56,373 WARNING:root:no previously-included directories found matching 'pycoalescence/lib/SimTest' 2023-09-11T23:25:56,374 WARNING:root:warning: no files found matching 'pycoalescence/necsim/libnecsim.so' 2023-09-11T23:25:56,375 WARNING:root:warning: no previously-included files matching '*DS_Store' found anywhere in distribution 2023-09-11T23:25:56,376 INFO:root:adding license file 'LICENSE.txt' 2023-09-11T23:25:56,381 INFO:root:writing manifest file '/tmp/pip-pip-egg-info-hanr0kl6/pycoalescence.egg-info/SOURCES.txt' 2023-09-11T23:25:56,490 Preparing metadata (setup.py): finished with status 'done' 2023-09-11T23:25:56,494 Source in /tmp/pip-wheel-484bqmyt/pycoalescence_27acedaeef6f4678ba1d81d79a407c50 has version 1.2.7.post6, which satisfies requirement pycoalescence==1.2.7.post6 from https://files.pythonhosted.org/packages/88/41/b0733d6e992156bc4366b8c5f04c024ac96f049984c2c69fdba2abd7fd20/pycoalescence-1.2.7.post6.tar.gz 2023-09-11T23:25:56,495 Removed pycoalescence==1.2.7.post6 from https://files.pythonhosted.org/packages/88/41/b0733d6e992156bc4366b8c5f04c024ac96f049984c2c69fdba2abd7fd20/pycoalescence-1.2.7.post6.tar.gz from build tracker '/tmp/pip-build-tracker-kyl8hu4s' 2023-09-11T23:25:56,500 Created temporary directory: /tmp/pip-unpack-rof04331 2023-09-11T23:25:56,501 Created temporary directory: /tmp/pip-unpack-vpf0lw1m 2023-09-11T23:25:56,519 Building wheels for collected packages: pycoalescence 2023-09-11T23:25:56,523 Created temporary directory: /tmp/pip-wheel-qh5kj159 2023-09-11T23:25:56,523 Building wheel for pycoalescence (setup.py): started 2023-09-11T23:25:56,525 Destination directory: /tmp/pip-wheel-qh5kj159 2023-09-11T23:25:56,525 Running command python setup.py bdist_wheel 2023-09-11T23:25:57,138 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:57,138 !! 2023-09-11T23:25:57,139 ******************************************************************************** 2023-09-11T23:25:57,140 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:57,140 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:57,141 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:57,141 or your builds will no longer be supported. 2023-09-11T23:25:57,142 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:57,142 ******************************************************************************** 2023-09-11T23:25:57,143 !! 2023-09-11T23:25:57,144 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:57,500 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:57,500 !! 2023-09-11T23:25:57,501 ******************************************************************************** 2023-09-11T23:25:57,502 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:57,502 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:57,503 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:57,504 or your builds will no longer be supported. 2023-09-11T23:25:57,504 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:57,505 ******************************************************************************** 2023-09-11T23:25:57,506 !! 2023-09-11T23:25:57,507 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:57,532 INFO:root:running bdist_wheel 2023-09-11T23:25:57,602 INFO:root:running build 2023-09-11T23:25:57,602 INFO:root:running build_py 2023-09-11T23:25:57,629 INFO:root:creating build 2023-09-11T23:25:57,629 INFO:root:creating build/lib.linux-armv7l-cpython-311 2023-09-11T23:25:57,630 INFO:root:creating build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,631 INFO:root:copying pycoalescence/helper.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,633 INFO:root:copying pycoalescence/patched_landscape.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,636 INFO:root:copying pycoalescence/landscape.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,638 INFO:root:copying pycoalescence/simulation.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,641 INFO:root:copying pycoalescence/spatial_algorithms.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,643 INFO:root:copying pycoalescence/hpc_setup.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,645 INFO:root:copying pycoalescence/system_operations.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,647 INFO:root:copying pycoalescence/coalescence_tree.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,651 INFO:root:copying pycoalescence/__init__.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,653 INFO:root:copying pycoalescence/future_except.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,654 INFO:root:copying pycoalescence/dispersal_simulation.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,657 INFO:root:copying pycoalescence/fragment_config.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,659 INFO:root:copying pycoalescence/landscape_metrics.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,661 INFO:root:copying pycoalescence/installer.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,663 INFO:root:copying pycoalescence/map.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,666 INFO:root:copying pycoalescence/sqlite_connection.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,668 INFO:root:copying pycoalescence/merger.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,671 INFO:root:copying pycoalescence/fragments.py -> build/lib.linux-armv7l-cpython-311/pycoalescence 2023-09-11T23:25:57,674 INFO:root:creating build/lib.linux-armv7l-cpython-311/pycoalescence/necsim 2023-09-11T23:25:57,674 INFO:root:copying pycoalescence/necsim/__init__.py -> build/lib.linux-armv7l-cpython-311/pycoalescence/necsim 2023-09-11T23:25:57,677 INFO:root:creating build/lib.linux-armv7l-cpython-311/pycoalescence/reference 2023-09-11T23:25:57,678 INFO:root:copying pycoalescence/reference/parameter_descriptions.json -> build/lib.linux-armv7l-cpython-311/pycoalescence/reference 2023-09-11T23:25:57,681 INFO:root:running build_ext 2023-09-11T23:25:57,684 error: [Errno 2] No such file or directory: 'gdal-config' 2023-09-11T23:25:57,792 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-11T23:25:57,805 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-11T23:25:57,805 exec(compile('"'"''"'"''"'"' 2023-09-11T23:25:57,805 # This is -- a caller that pip uses to run setup.py 2023-09-11T23:25:57,805 # 2023-09-11T23:25:57,805 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-11T23:25:57,805 # import from `distutils.core` to work with newer packaging standards. 2023-09-11T23:25:57,805 # - It provides a clear error message when setuptools is not installed. 2023-09-11T23:25:57,805 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-11T23:25:57,805 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-11T23:25:57,805 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-11T23:25:57,805 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-11T23:25:57,805 import os, sys, tokenize 2023-09-11T23:25:57,805 2023-09-11T23:25:57,805 try: 2023-09-11T23:25:57,805 import setuptools 2023-09-11T23:25:57,805 except ImportError as error: 2023-09-11T23:25:57,805 print( 2023-09-11T23:25:57,805 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-11T23:25:57,805 "the build environment.", 2023-09-11T23:25:57,805 file=sys.stderr, 2023-09-11T23:25:57,805 ) 2023-09-11T23:25:57,805 sys.exit(1) 2023-09-11T23:25:57,805 2023-09-11T23:25:57,805 __file__ = %r 2023-09-11T23:25:57,805 sys.argv[0] = __file__ 2023-09-11T23:25:57,805 2023-09-11T23:25:57,805 if os.path.exists(__file__): 2023-09-11T23:25:57,805 filename = __file__ 2023-09-11T23:25:57,805 with tokenize.open(__file__) as f: 2023-09-11T23:25:57,805 setup_py_code = f.read() 2023-09-11T23:25:57,805 else: 2023-09-11T23:25:57,805 filename = "" 2023-09-11T23:25:57,805 setup_py_code = "from setuptools import setup; setup()" 2023-09-11T23:25:57,805 2023-09-11T23:25:57,805 exec(compile(setup_py_code, filename, "exec")) 2023-09-11T23:25:57,805 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-484bqmyt/pycoalescence_27acedaeef6f4678ba1d81d79a407c50/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-qh5kj159[/] 2023-09-11T23:25:57,806 [bold magenta]cwd[/]: /tmp/pip-wheel-484bqmyt/pycoalescence_27acedaeef6f4678ba1d81d79a407c50/ 2023-09-11T23:25:57,806 Building wheel for pycoalescence (setup.py): finished with status 'error' 2023-09-11T23:25:57,808 ERROR: Failed building wheel for pycoalescence 2023-09-11T23:25:57,809 Running setup.py clean for pycoalescence 2023-09-11T23:25:57,810 Running command python setup.py clean 2023-09-11T23:25:58,425 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:58,425 !! 2023-09-11T23:25:58,426 ******************************************************************************** 2023-09-11T23:25:58,427 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:58,427 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:58,428 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:58,428 or your builds will no longer be supported. 2023-09-11T23:25:58,429 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:58,430 ******************************************************************************** 2023-09-11T23:25:58,430 !! 2023-09-11T23:25:58,431 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:58,796 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:510: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-09-11T23:25:58,797 !! 2023-09-11T23:25:58,798 ******************************************************************************** 2023-09-11T23:25:58,798 Usage of dash-separated 'description-file' will not be supported in future 2023-09-11T23:25:58,799 versions. Please use the underscore name 'description_file' instead. 2023-09-11T23:25:58,800 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-09-11T23:25:58,800 or your builds will no longer be supported. 2023-09-11T23:25:58,801 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-09-11T23:25:58,802 ******************************************************************************** 2023-09-11T23:25:58,803 !! 2023-09-11T23:25:58,804 opt = self.warn_dash_deprecation(opt, section) 2023-09-11T23:25:58,831 INFO:root:running clean 2023-09-11T23:25:58,877 INFO:root:removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-11T23:25:58,878 INFO:root:removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-11T23:25:58,886 WARNING:root:'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-11T23:25:58,886 WARNING:root:'build/scripts-3.11' does not exist -- can't clean it 2023-09-11T23:25:58,887 INFO:root:removing 'build' 2023-09-11T23:25:58,993 Failed to build pycoalescence 2023-09-11T23:25:58,995 ERROR: Failed to build one or more wheels 2023-09-11T23:25:58,996 Exception information: 2023-09-11T23:25:58,996 Traceback (most recent call last): 2023-09-11T23:25:58,996 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-11T23:25:58,996 status = run_func(*args) 2023-09-11T23:25:58,996 ^^^^^^^^^^^^^^^ 2023-09-11T23:25:58,996 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-11T23:25:58,996 return func(self, options, args) 2023-09-11T23:25:58,996 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:25:58,996 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-11T23:25:58,996 raise CommandError("Failed to build one or more wheels") 2023-09-11T23:25:58,996 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-11T23:25:59,000 Removed build tracker: '/tmp/pip-build-tracker-kyl8hu4s'