2023-09-11T23:29:08,721 Created temporary directory: /tmp/pip-build-tracker-_292x9gu 2023-09-11T23:29:08,723 Initialized build tracking at /tmp/pip-build-tracker-_292x9gu 2023-09-11T23:29:08,723 Created build tracker: /tmp/pip-build-tracker-_292x9gu 2023-09-11T23:29:08,724 Entered build tracker: /tmp/pip-build-tracker-_292x9gu 2023-09-11T23:29:08,724 Created temporary directory: /tmp/pip-wheel-oj30xi1i 2023-09-11T23:29:08,728 Created temporary directory: /tmp/pip-ephem-wheel-cache-_rqqrfzn 2023-09-11T23:29:08,749 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-11T23:29:08,752 2 location(s) to search for versions of amlearn: 2023-09-11T23:29:08,752 * https://pypi.org/simple/amlearn/ 2023-09-11T23:29:08,752 * https://www.piwheels.org/simple/amlearn/ 2023-09-11T23:29:08,753 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2023-09-11T23:29:08,754 Getting page https://pypi.org/simple/amlearn/ 2023-09-11T23:29:08,756 Found index url https://pypi.org/simple/ 2023-09-11T23:29:08,897 Fetched page https://pypi.org/simple/amlearn/ as application/vnd.pypi.simple.v1+json 2023-09-11T23:29:08,901 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2023-09-11T23:29:08,902 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.1.0 2023-09-11T23:29:08,903 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.0 2023-09-11T23:29:08,904 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.1 2023-09-11T23:29:08,952 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.2 2023-09-11T23:29:08,953 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.3 2023-09-11T23:29:08,954 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.4 2023-09-11T23:29:08,954 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.5 2023-09-11T23:29:08,955 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.6 2023-09-11T23:29:08,956 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.1 2023-09-11T23:29:08,956 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.2 2023-09-11T23:29:08,957 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.3 2023-09-11T23:29:08,958 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.4 2023-09-11T23:29:08,959 Fetching project page and analyzing links: https://www.piwheels.org/simple/amlearn/ 2023-09-11T23:29:08,960 Getting page https://www.piwheels.org/simple/amlearn/ 2023-09-11T23:29:08,961 Found index url https://www.piwheels.org/simple/ 2023-09-11T23:29:09,216 Fetched page https://www.piwheels.org/simple/amlearn/ as text/html 2023-09-11T23:29:09,217 Skipping link: not a file: https://www.piwheels.org/simple/amlearn/ 2023-09-11T23:29:09,218 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2023-09-11T23:29:09,237 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2023-09-11T23:29:09,255 Collecting amlearn==0.2.1 2023-09-11T23:29:09,258 Created temporary directory: /tmp/pip-unpack-_10saxpe 2023-09-11T23:29:09,506 Downloading amlearn-0.2.1.tar.gz (82 kB) 2023-09-11T23:29:09,695 Added amlearn==0.2.1 from https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-_292x9gu' 2023-09-11T23:29:09,696 Running setup.py (path:/tmp/pip-wheel-oj30xi1i/amlearn_e825e388efb24865a55f1c234976dbb6/setup.py) egg_info for package amlearn 2023-09-11T23:29:09,697 Created temporary directory: /tmp/pip-pip-egg-info-o03yjcyh 2023-09-11T23:29:09,698 Preparing metadata (setup.py): started 2023-09-11T23:29:09,699 Running command python setup.py egg_info 2023-09-11T23:29:10,138 Traceback (most recent call last): 2023-09-11T23:29:10,138 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-11T23:29:10,139 from . import multiarray 2023-09-11T23:29:10,140 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-11T23:29:10,140 from . import overrides 2023-09-11T23:29:10,141 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-11T23:29:10,142 from numpy.core._multiarray_umath import ( 2023-09-11T23:29:10,151 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-11T23:29:10,153 During handling of the above exception, another exception occurred: 2023-09-11T23:29:10,155 Traceback (most recent call last): 2023-09-11T23:29:10,155 File "/tmp/pip-wheel-oj30xi1i/amlearn_e825e388efb24865a55f1c234976dbb6/setup.py", line 8, in 2023-09-11T23:29:10,157 from numpy.distutils.core import Extension, setup 2023-09-11T23:29:10,157 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-11T23:29:10,158 from . import core 2023-09-11T23:29:10,160 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-11T23:29:10,161 raise ImportError(msg) 2023-09-11T23:29:10,162 ImportError: 2023-09-11T23:29:10,163 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-11T23:29:10,165 Importing the numpy C-extensions failed. This error can happen for 2023-09-11T23:29:10,166 many reasons, often due to issues with your setup or how NumPy was 2023-09-11T23:29:10,167 installed. 2023-09-11T23:29:10,169 We have compiled some common reasons and troubleshooting tips at: 2023-09-11T23:29:10,171 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-11T23:29:10,172 Please note and check the following: 2023-09-11T23:29:10,174 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-11T23:29:10,175 * The NumPy version is: "1.25.2" 2023-09-11T23:29:10,177 and make sure that they are the versions you expect. 2023-09-11T23:29:10,177 Please carefully study the documentation linked above for further help. 2023-09-11T23:29:10,179 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-11T23:29:10,182 During handling of the above exception, another exception occurred: 2023-09-11T23:29:10,184 Traceback (most recent call last): 2023-09-11T23:29:10,184 File "", line 2, in 2023-09-11T23:29:10,185 File "", line 34, in 2023-09-11T23:29:10,186 File "/tmp/pip-wheel-oj30xi1i/amlearn_e825e388efb24865a55f1c234976dbb6/setup.py", line 16, in 2023-09-11T23:29:10,187 raise RuntimeError(msg) 2023-09-11T23:29:10,188 RuntimeError: Please install numpy (version 1.7.0 or greater) before installing Amlearn. Because Amlearn uses numpy's f2py to compile the fortran modules to speed up the calculation of featurizer. like: $ conda install numpy $ pip install numpy 2023-09-11T23:29:10,229 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-11T23:29:10,241 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-11T23:29:10,241 exec(compile('"'"''"'"''"'"' 2023-09-11T23:29:10,241 # This is -- a caller that pip uses to run setup.py 2023-09-11T23:29:10,241 # 2023-09-11T23:29:10,241 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-11T23:29:10,241 # import from `distutils.core` to work with newer packaging standards. 2023-09-11T23:29:10,241 # - It provides a clear error message when setuptools is not installed. 2023-09-11T23:29:10,241 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-11T23:29:10,241 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-11T23:29:10,241 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-11T23:29:10,241 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-11T23:29:10,241 import os, sys, tokenize 2023-09-11T23:29:10,241 2023-09-11T23:29:10,241 try: 2023-09-11T23:29:10,241 import setuptools 2023-09-11T23:29:10,241 except ImportError as error: 2023-09-11T23:29:10,241 print( 2023-09-11T23:29:10,241 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-11T23:29:10,241 "the build environment.", 2023-09-11T23:29:10,241 file=sys.stderr, 2023-09-11T23:29:10,241 ) 2023-09-11T23:29:10,241 sys.exit(1) 2023-09-11T23:29:10,241 2023-09-11T23:29:10,241 __file__ = %r 2023-09-11T23:29:10,241 sys.argv[0] = __file__ 2023-09-11T23:29:10,241 2023-09-11T23:29:10,241 if os.path.exists(__file__): 2023-09-11T23:29:10,241 filename = __file__ 2023-09-11T23:29:10,241 with tokenize.open(__file__) as f: 2023-09-11T23:29:10,241 setup_py_code = f.read() 2023-09-11T23:29:10,241 else: 2023-09-11T23:29:10,241 filename = "" 2023-09-11T23:29:10,241 setup_py_code = "from setuptools import setup; setup()" 2023-09-11T23:29:10,241 2023-09-11T23:29:10,241 exec(compile(setup_py_code, filename, "exec")) 2023-09-11T23:29:10,241 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-oj30xi1i/amlearn_e825e388efb24865a55f1c234976dbb6/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-o03yjcyh[/] 2023-09-11T23:29:10,242 [bold magenta]cwd[/]: /tmp/pip-wheel-oj30xi1i/amlearn_e825e388efb24865a55f1c234976dbb6/ 2023-09-11T23:29:10,243 Preparing metadata (setup.py): finished with status 'error' 2023-09-11T23:29:10,244 ERROR: [present-rich] metadata generation failed 2023-09-11T23:29:10,249 Exception information: 2023-09-11T23:29:10,249 Traceback (most recent call last): 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-11T23:29:10,249 call_subprocess( 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-11T23:29:10,249 raise error 2023-09-11T23:29:10,249 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-11T23:29:10,249 2023-09-11T23:29:10,249 The above exception was the direct cause of the following exception: 2023-09-11T23:29:10,249 2023-09-11T23:29:10,249 Traceback (most recent call last): 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-11T23:29:10,249 status = run_func(*args) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-11T23:29:10,249 return func(self, options, args) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-11T23:29:10,249 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-11T23:29:10,249 result = self._result = resolver.resolve( 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-11T23:29:10,249 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-11T23:29:10,249 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-11T23:29:10,249 if not criterion.candidates: 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-11T23:29:10,249 return bool(self._sequence) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-11T23:29:10,249 return any(self) 2023-09-11T23:29:10,249 ^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-11T23:29:10,249 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-11T23:29:10,249 candidate = func() 2023-09-11T23:29:10,249 ^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-11T23:29:10,249 self._link_candidate_cache[link] = LinkCandidate( 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-11T23:29:10,249 super().__init__( 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-11T23:29:10,249 self.dist = self._prepare() 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-11T23:29:10,249 dist = self._prepare_distribution() 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-11T23:29:10,249 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-11T23:29:10,249 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-11T23:29:10,249 dist = _get_prepared_distribution( 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-11T23:29:10,249 abstract_dist.prepare_distribution_metadata( 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-11T23:29:10,249 self.req.prepare_metadata() 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-11T23:29:10,249 self.metadata_directory = generate_metadata_legacy( 2023-09-11T23:29:10,249 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-11T23:29:10,249 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-11T23:29:10,249 raise MetadataGenerationFailed(package_details=details) from error 2023-09-11T23:29:10,249 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-11T23:29:10,262 Removed amlearn==0.2.1 from https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-_292x9gu' 2023-09-11T23:29:10,263 Removed build tracker: '/tmp/pip-build-tracker-_292x9gu'