2023-09-12T03:37:07,507 Created temporary directory: /tmp/pip-build-tracker-b8y81oov 2023-09-12T03:37:07,509 Initialized build tracking at /tmp/pip-build-tracker-b8y81oov 2023-09-12T03:37:07,509 Created build tracker: /tmp/pip-build-tracker-b8y81oov 2023-09-12T03:37:07,509 Entered build tracker: /tmp/pip-build-tracker-b8y81oov 2023-09-12T03:37:07,510 Created temporary directory: /tmp/pip-wheel-dq8be458 2023-09-12T03:37:07,513 Created temporary directory: /tmp/pip-ephem-wheel-cache-7f7bx85f 2023-09-12T03:37:07,538 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T03:37:07,542 2 location(s) to search for versions of amlearn: 2023-09-12T03:37:07,542 * https://pypi.org/simple/amlearn/ 2023-09-12T03:37:07,542 * https://www.piwheels.org/simple/amlearn/ 2023-09-12T03:37:07,542 Fetching project page and analyzing links: https://pypi.org/simple/amlearn/ 2023-09-12T03:37:07,543 Getting page https://pypi.org/simple/amlearn/ 2023-09-12T03:37:07,545 Found index url https://pypi.org/simple/ 2023-09-12T03:37:07,694 Fetched page https://pypi.org/simple/amlearn/ as application/vnd.pypi.simple.v1+json 2023-09-12T03:37:07,697 Found link https://files.pythonhosted.org/packages/5b/37/b16f0e09d837e63766331f1e212eccd32b46da07fa38269be86c0908c613/amlearn-0.0.1rc1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.0.1rc1 2023-09-12T03:37:07,698 Found link https://files.pythonhosted.org/packages/c9/69/69f3bd8acf04b6af467a52a212de838bf9cc412724b0197b1523b8703808/amlearn-0.1.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.1.0 2023-09-12T03:37:07,699 Found link https://files.pythonhosted.org/packages/d8/26/d78c59d9be85d65e5fae532c317c98f8dc8184831f66a0ae50fc6099e23d/amlearn-0.2.0.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.0 2023-09-12T03:37:07,699 Found link https://files.pythonhosted.org/packages/bb/91/5d7bc08da68c418d6a61ba40238d065acafeff63ecd5c802d6bff7790aba/amlearn-0.2.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.1 2023-09-12T03:37:07,700 Found link https://files.pythonhosted.org/packages/55/df/26e461638a88a71b48f07abfe48d5bd2e5c20bb3cf3967a8d2e18385a460/amlearn-0.2.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.2 2023-09-12T03:37:07,701 Found link https://files.pythonhosted.org/packages/80/8b/f29ae904d859e804eb774dd137d0ca7a549737754751446cca2973d301da/amlearn-0.2.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.3 2023-09-12T03:37:07,701 Found link https://files.pythonhosted.org/packages/6f/95/4f17c41fa8c92431ceecc63417552a0cacd918f6fd486fecd5da7c150624/amlearn-0.2.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.4 2023-09-12T03:37:07,702 Found link https://files.pythonhosted.org/packages/34/b3/b65030f870412ef8adb550da9e3e58e794b61ba08d7bf61920f8448e9a06/amlearn-0.2.5.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.5 2023-09-12T03:37:07,703 Found link https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.2.6 2023-09-12T03:37:07,704 Found link https://files.pythonhosted.org/packages/9b/3a/482db82334f7cef1d3d61de69919813a75396692267a1d277378fff90b15/amlearn-0.3.1.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.1 2023-09-12T03:37:07,704 Found link https://files.pythonhosted.org/packages/72/50/8891e4d0dc140c1e7b362e8045c01b8e86415bcb951e701e974776f4dc94/amlearn-0.3.2.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.2 2023-09-12T03:37:07,705 Found link https://files.pythonhosted.org/packages/e2/26/2df8cbc6aa583a9f7196ebe4bf76b969260a39c0dd91cd1961b67d0ae984/amlearn-0.3.3.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.3 2023-09-12T03:37:07,706 Found link https://files.pythonhosted.org/packages/80/95/ed6fd2b47ba6b38590fa63a50fbdd07945f8d234c4e32f2f0a3558fd27b9/amlearn-0.3.4.tar.gz (from https://pypi.org/simple/amlearn/), version: 0.3.4 2023-09-12T03:37:07,707 Fetching project page and analyzing links: https://www.piwheels.org/simple/amlearn/ 2023-09-12T03:37:07,708 Getting page https://www.piwheels.org/simple/amlearn/ 2023-09-12T03:37:07,709 Found index url https://www.piwheels.org/simple/ 2023-09-12T03:37:07,974 Fetched page https://www.piwheels.org/simple/amlearn/ as text/html 2023-09-12T03:37:07,975 Skipping link: not a file: https://www.piwheels.org/simple/amlearn/ 2023-09-12T03:37:07,976 Skipping link: not a file: https://pypi.org/simple/amlearn/ 2023-09-12T03:37:07,998 Given no hashes to check 1 links for project 'amlearn': discarding no candidates 2023-09-12T03:37:08,021 Collecting amlearn==0.2.6 2023-09-12T03:37:08,027 Created temporary directory: /tmp/pip-unpack-jd6zio2a 2023-09-12T03:37:08,247 Downloading amlearn-0.2.6.tar.gz (83 kB) 2023-09-12T03:37:08,422 Added amlearn==0.2.6 from https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz to build tracker '/tmp/pip-build-tracker-b8y81oov' 2023-09-12T03:37:08,424 Running setup.py (path:/tmp/pip-wheel-dq8be458/amlearn_9be269cef7fa406b94e82eb9cdecefbe/setup.py) egg_info for package amlearn 2023-09-12T03:37:08,425 Created temporary directory: /tmp/pip-pip-egg-info-8ejea8pp 2023-09-12T03:37:08,425 Preparing metadata (setup.py): started 2023-09-12T03:37:08,426 Running command python setup.py egg_info 2023-09-12T03:37:08,877 Traceback (most recent call last): 2023-09-12T03:37:08,878 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in 2023-09-12T03:37:08,878 from . import multiarray 2023-09-12T03:37:08,879 File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in 2023-09-12T03:37:08,879 from . import overrides 2023-09-12T03:37:08,880 File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in 2023-09-12T03:37:08,881 from numpy.core._multiarray_umath import ( 2023-09-12T03:37:08,881 ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-12T03:37:08,883 During handling of the above exception, another exception occurred: 2023-09-12T03:37:08,885 Traceback (most recent call last): 2023-09-12T03:37:08,887 File "/tmp/pip-wheel-dq8be458/amlearn_9be269cef7fa406b94e82eb9cdecefbe/setup.py", line 8, in 2023-09-12T03:37:08,888 from numpy.distutils.core import Extension, setup 2023-09-12T03:37:08,888 File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in 2023-09-12T03:37:08,889 from . import core 2023-09-12T03:37:08,890 File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in 2023-09-12T03:37:08,891 raise ImportError(msg) 2023-09-12T03:37:08,892 ImportError: 2023-09-12T03:37:08,894 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 2023-09-12T03:37:08,896 Importing the numpy C-extensions failed. This error can happen for 2023-09-12T03:37:08,896 many reasons, often due to issues with your setup or how NumPy was 2023-09-12T03:37:08,897 installed. 2023-09-12T03:37:08,899 We have compiled some common reasons and troubleshooting tips at: 2023-09-12T03:37:08,901 https://numpy.org/devdocs/user/troubleshooting-importerror.html 2023-09-12T03:37:08,902 Please note and check the following: 2023-09-12T03:37:08,904 * The Python version is: Python3.11 from "/usr/bin/python3" 2023-09-12T03:37:08,905 * The NumPy version is: "1.25.2" 2023-09-12T03:37:08,907 and make sure that they are the versions you expect. 2023-09-12T03:37:08,908 Please carefully study the documentation linked above for further help. 2023-09-12T03:37:08,909 Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory 2023-09-12T03:37:08,912 During handling of the above exception, another exception occurred: 2023-09-12T03:37:08,914 Traceback (most recent call last): 2023-09-12T03:37:08,915 File "", line 2, in 2023-09-12T03:37:08,916 File "", line 34, in 2023-09-12T03:37:08,916 File "/tmp/pip-wheel-dq8be458/amlearn_9be269cef7fa406b94e82eb9cdecefbe/setup.py", line 16, in 2023-09-12T03:37:08,917 raise RuntimeError(msg) 2023-09-12T03:37:08,918 RuntimeError: Please install numpy (version 1.7.0 or greater) before installing Amlearn. Because Amlearn uses numpy's f2py to compile the fortran modules to speed up the calculation of featurizer. like: $ conda install numpy $ pip install numpy 2023-09-12T03:37:08,956 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-12T03:37:08,969 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-12T03:37:08,969 exec(compile('"'"''"'"''"'"' 2023-09-12T03:37:08,969 # This is -- a caller that pip uses to run setup.py 2023-09-12T03:37:08,969 # 2023-09-12T03:37:08,969 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T03:37:08,969 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T03:37:08,969 # - It provides a clear error message when setuptools is not installed. 2023-09-12T03:37:08,969 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T03:37:08,969 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T03:37:08,969 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T03:37:08,969 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T03:37:08,969 import os, sys, tokenize 2023-09-12T03:37:08,969 2023-09-12T03:37:08,969 try: 2023-09-12T03:37:08,969 import setuptools 2023-09-12T03:37:08,969 except ImportError as error: 2023-09-12T03:37:08,969 print( 2023-09-12T03:37:08,969 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T03:37:08,969 "the build environment.", 2023-09-12T03:37:08,969 file=sys.stderr, 2023-09-12T03:37:08,969 ) 2023-09-12T03:37:08,969 sys.exit(1) 2023-09-12T03:37:08,969 2023-09-12T03:37:08,969 __file__ = %r 2023-09-12T03:37:08,969 sys.argv[0] = __file__ 2023-09-12T03:37:08,969 2023-09-12T03:37:08,969 if os.path.exists(__file__): 2023-09-12T03:37:08,969 filename = __file__ 2023-09-12T03:37:08,969 with tokenize.open(__file__) as f: 2023-09-12T03:37:08,969 setup_py_code = f.read() 2023-09-12T03:37:08,969 else: 2023-09-12T03:37:08,969 filename = "" 2023-09-12T03:37:08,969 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T03:37:08,969 2023-09-12T03:37:08,969 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T03:37:08,969 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-dq8be458/amlearn_9be269cef7fa406b94e82eb9cdecefbe/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-8ejea8pp[/] 2023-09-12T03:37:08,969 [bold magenta]cwd[/]: /tmp/pip-wheel-dq8be458/amlearn_9be269cef7fa406b94e82eb9cdecefbe/ 2023-09-12T03:37:08,970 Preparing metadata (setup.py): finished with status 'error' 2023-09-12T03:37:08,971 ERROR: [present-rich] metadata generation failed 2023-09-12T03:37:08,977 Exception information: 2023-09-12T03:37:08,977 Traceback (most recent call last): 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-12T03:37:08,977 call_subprocess( 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-12T03:37:08,977 raise error 2023-09-12T03:37:08,977 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-12T03:37:08,977 2023-09-12T03:37:08,977 The above exception was the direct cause of the following exception: 2023-09-12T03:37:08,977 2023-09-12T03:37:08,977 Traceback (most recent call last): 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-12T03:37:08,977 status = run_func(*args) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-12T03:37:08,977 return func(self, options, args) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-12T03:37:08,977 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-12T03:37:08,977 result = self._result = resolver.resolve( 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-12T03:37:08,977 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-12T03:37:08,977 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-12T03:37:08,977 if not criterion.candidates: 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-12T03:37:08,977 return bool(self._sequence) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-12T03:37:08,977 return any(self) 2023-09-12T03:37:08,977 ^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-12T03:37:08,977 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-12T03:37:08,977 candidate = func() 2023-09-12T03:37:08,977 ^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-12T03:37:08,977 self._link_candidate_cache[link] = LinkCandidate( 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-12T03:37:08,977 super().__init__( 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-12T03:37:08,977 self.dist = self._prepare() 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-12T03:37:08,977 dist = self._prepare_distribution() 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-12T03:37:08,977 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-12T03:37:08,977 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-12T03:37:08,977 dist = _get_prepared_distribution( 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-12T03:37:08,977 abstract_dist.prepare_distribution_metadata( 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-12T03:37:08,977 self.req.prepare_metadata() 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-12T03:37:08,977 self.metadata_directory = generate_metadata_legacy( 2023-09-12T03:37:08,977 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:37:08,977 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-12T03:37:08,977 raise MetadataGenerationFailed(package_details=details) from error 2023-09-12T03:37:08,977 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-12T03:37:08,989 Removed amlearn==0.2.6 from https://files.pythonhosted.org/packages/a5/48/c9242309cea218dd4cccf08cf25320987703b250691f37dc69b5078e0069/amlearn-0.2.6.tar.gz from build tracker '/tmp/pip-build-tracker-b8y81oov' 2023-09-12T03:37:08,990 Removed build tracker: '/tmp/pip-build-tracker-b8y81oov'