2023-09-12T03:48:35,317 Created temporary directory: /tmp/pip-build-tracker-emgjbkrx 2023-09-12T03:48:35,318 Initialized build tracking at /tmp/pip-build-tracker-emgjbkrx 2023-09-12T03:48:35,319 Created build tracker: /tmp/pip-build-tracker-emgjbkrx 2023-09-12T03:48:35,319 Entered build tracker: /tmp/pip-build-tracker-emgjbkrx 2023-09-12T03:48:35,320 Created temporary directory: /tmp/pip-wheel-v68fn6dj 2023-09-12T03:48:35,323 Created temporary directory: /tmp/pip-ephem-wheel-cache-wlzc9yq4 2023-09-12T03:48:35,344 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T03:48:35,348 2 location(s) to search for versions of pybedtools: 2023-09-12T03:48:35,348 * https://pypi.org/simple/pybedtools/ 2023-09-12T03:48:35,348 * https://www.piwheels.org/simple/pybedtools/ 2023-09-12T03:48:35,349 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2023-09-12T03:48:35,349 Getting page https://pypi.org/simple/pybedtools/ 2023-09-12T03:48:35,351 Found index url https://pypi.org/simple/ 2023-09-12T03:48:35,569 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2023-09-12T03:48:35,575 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2023-09-12T03:48:35,576 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2023-09-12T03:48:35,576 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2023-09-12T03:48:35,577 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2023-09-12T03:48:35,578 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2023-09-12T03:48:35,579 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2023-09-12T03:48:35,579 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2023-09-12T03:48:35,580 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2023-09-12T03:48:35,581 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2023-09-12T03:48:35,582 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2023-09-12T03:48:35,582 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2023-09-12T03:48:35,583 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2023-09-12T03:48:35,584 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2023-09-12T03:48:35,584 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2023-09-12T03:48:35,585 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2023-09-12T03:48:35,586 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2023-09-12T03:48:35,586 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2023-09-12T03:48:35,587 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2023-09-12T03:48:35,588 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2023-09-12T03:48:35,588 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2023-09-12T03:48:35,589 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2023-09-12T03:48:35,589 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2023-09-12T03:48:35,590 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2023-09-12T03:48:35,591 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2023-09-12T03:48:35,591 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2023-09-12T03:48:35,592 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2023-09-12T03:48:35,593 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2023-09-12T03:48:35,593 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2023-09-12T03:48:35,594 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2023-09-12T03:48:35,596 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2023-09-12T03:48:35,597 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2023-09-12T03:48:35,597 Getting page https://www.piwheels.org/simple/pybedtools/ 2023-09-12T03:48:35,599 Found index url https://www.piwheels.org/simple/ 2023-09-12T03:48:35,914 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2023-09-12T03:48:35,970 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2023-09-12T03:48:35,970 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2023-09-12T03:48:35,992 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2023-09-12T03:48:36,010 Collecting pybedtools==0.8.1 2023-09-12T03:48:36,012 Created temporary directory: /tmp/pip-unpack-fb98p2_0 2023-09-12T03:48:36,414 Downloading pybedtools-0.8.1.tar.gz (12.5 MB) 2023-09-12T03:48:38,640 Added pybedtools==0.8.1 from https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-emgjbkrx' 2023-09-12T03:48:38,642 Running setup.py (path:/tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py) egg_info for package pybedtools 2023-09-12T03:48:38,643 Created temporary directory: /tmp/pip-pip-egg-info-xqeppoj8 2023-09-12T03:48:38,643 Preparing metadata (setup.py): started 2023-09-12T03:48:38,645 Running command python setup.py egg_info 2023-09-12T03:48:39,307 /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-12T03:48:39,307 import pkg_resources 2023-09-12T03:48:39,725 running egg_info 2023-09-12T03:48:39,726 creating /tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info 2023-09-12T03:48:39,749 writing /tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/PKG-INFO 2023-09-12T03:48:39,752 writing dependency_links to /tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/dependency_links.txt 2023-09-12T03:48:39,754 writing requirements to /tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/requires.txt 2023-09-12T03:48:39,755 writing top-level names to /tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/top_level.txt 2023-09-12T03:48:39,756 writing manifest file '/tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:39,849 reading manifest file '/tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:39,851 adding license file 'LICENSE.txt' 2023-09-12T03:48:39,856 writing manifest file '/tmp/pip-pip-egg-info-xqeppoj8/pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:39,970 Preparing metadata (setup.py): finished with status 'done' 2023-09-12T03:48:39,974 Source in /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa has version 0.8.1, which satisfies requirement pybedtools==0.8.1 from https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz 2023-09-12T03:48:39,975 Removed pybedtools==0.8.1 from https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-emgjbkrx' 2023-09-12T03:48:39,979 Created temporary directory: /tmp/pip-unpack-wc8v24w3 2023-09-12T03:48:39,980 Created temporary directory: /tmp/pip-unpack-ndzt0mdc 2023-09-12T03:48:39,985 Building wheels for collected packages: pybedtools 2023-09-12T03:48:39,989 Created temporary directory: /tmp/pip-wheel-fffvy7uo 2023-09-12T03:48:39,989 Building wheel for pybedtools (setup.py): started 2023-09-12T03:48:39,991 Destination directory: /tmp/pip-wheel-fffvy7uo 2023-09-12T03:48:39,991 Running command python setup.py bdist_wheel 2023-09-12T03:48:40,599 /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-12T03:48:40,599 import pkg_resources 2023-09-12T03:48:41,002 running bdist_wheel 2023-09-12T03:48:41,025 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-09-12T03:48:41,049 running build 2023-09-12T03:48:41,050 running build_py 2023-09-12T03:48:41,076 creating build 2023-09-12T03:48:41,077 creating build/lib.linux-armv7l-cpython-311 2023-09-12T03:48:41,078 creating build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,079 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,081 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,083 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,086 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,087 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,089 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,093 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,095 copying pybedtools/__main__.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,097 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,099 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,100 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,105 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,107 creating build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,108 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,109 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,111 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,112 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,115 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,117 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,118 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,120 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,122 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,124 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,127 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,129 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,131 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test 2023-09-12T03:48:41,134 creating build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,134 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,136 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,138 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,140 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,142 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,144 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,146 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-311/pybedtools/contrib 2023-09-12T03:48:41,149 creating build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,150 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,152 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,155 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,158 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,160 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,162 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,164 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,166 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,169 creating build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,171 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,174 running egg_info 2023-09-12T03:48:41,206 creating pybedtools.egg-info 2023-09-12T03:48:41,239 writing pybedtools.egg-info/PKG-INFO 2023-09-12T03:48:41,242 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2023-09-12T03:48:41,244 writing requirements to pybedtools.egg-info/requires.txt 2023-09-12T03:48:41,245 writing top-level names to pybedtools.egg-info/top_level.txt 2023-09-12T03:48:41,246 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:41,284 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:41,285 adding license file 'LICENSE.txt' 2023-09-12T03:48:41,290 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-09-12T03:48:41,292 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2023-09-12T03:48:41,293 !! 2023-09-12T03:48:41,294 ******************************************************************************** 2023-09-12T03:48:41,294 ############################ 2023-09-12T03:48:41,294 # Package would be ignored # 2023-09-12T03:48:41,295 ############################ 2023-09-12T03:48:41,295 Python recognizes 'pybedtools.include' as an importable package[^1], 2023-09-12T03:48:41,296 but it is absent from setuptools' `packages` configuration. 2023-09-12T03:48:41,297 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-12T03:48:41,297 package, please make sure that 'pybedtools.include' is explicitly added 2023-09-12T03:48:41,298 to the `packages` configuration field. 2023-09-12T03:48:41,299 Alternatively, you can also rely on setuptools' discovery methods 2023-09-12T03:48:41,299 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-12T03:48:41,300 instead of `find_packages(...)`/`find:`). 2023-09-12T03:48:41,301 You can read more about "package discovery" on setuptools documentation page: 2023-09-12T03:48:41,302 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-12T03:48:41,303 If you don't want 'pybedtools.include' to be distributed and are 2023-09-12T03:48:41,304 already explicitly excluding 'pybedtools.include' via 2023-09-12T03:48:41,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-12T03:48:41,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-12T03:48:41,306 combination with a more fine grained `package-data` configuration. 2023-09-12T03:48:41,307 You can read more about "package data files" on setuptools documentation page: 2023-09-12T03:48:41,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-12T03:48:41,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-12T03:48:41,310 even if it does not contain any `.py` files. 2023-09-12T03:48:41,310 On the other hand, currently there is no concept of package data 2023-09-12T03:48:41,311 directory, all directories are treated like packages. 2023-09-12T03:48:41,311 ******************************************************************************** 2023-09-12T03:48:41,312 !! 2023-09-12T03:48:41,313 check.warn(importable) 2023-09-12T03:48:41,314 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pybedtools.scripts.examples' is absent from the `packages` configuration. 2023-09-12T03:48:41,316 !! 2023-09-12T03:48:41,318 ******************************************************************************** 2023-09-12T03:48:41,320 ############################ 2023-09-12T03:48:41,325 # Package would be ignored # 2023-09-12T03:48:41,325 ############################ 2023-09-12T03:48:41,326 Python recognizes 'pybedtools.scripts.examples' as an importable package[^1], 2023-09-12T03:48:41,327 but it is absent from setuptools' `packages` configuration. 2023-09-12T03:48:41,328 This leads to an ambiguous overall configuration. If you want to distribute this 2023-09-12T03:48:41,328 package, please make sure that 'pybedtools.scripts.examples' is explicitly added 2023-09-12T03:48:41,329 to the `packages` configuration field. 2023-09-12T03:48:41,330 Alternatively, you can also rely on setuptools' discovery methods 2023-09-12T03:48:41,331 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-09-12T03:48:41,331 instead of `find_packages(...)`/`find:`). 2023-09-12T03:48:41,339 You can read more about "package discovery" on setuptools documentation page: 2023-09-12T03:48:41,340 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-09-12T03:48:41,341 If you don't want 'pybedtools.scripts.examples' to be distributed and are 2023-09-12T03:48:41,341 already explicitly excluding 'pybedtools.scripts.examples' via 2023-09-12T03:48:41,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-09-12T03:48:41,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-09-12T03:48:41,343 combination with a more fine grained `package-data` configuration. 2023-09-12T03:48:41,344 You can read more about "package data files" on setuptools documentation page: 2023-09-12T03:48:41,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-09-12T03:48:41,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-09-12T03:48:41,347 even if it does not contain any `.py` files. 2023-09-12T03:48:41,347 On the other hand, currently there is no concept of package data 2023-09-12T03:48:41,348 directory, all directories are treated like packages. 2023-09-12T03:48:41,349 ******************************************************************************** 2023-09-12T03:48:41,349 !! 2023-09-12T03:48:41,350 check.warn(importable) 2023-09-12T03:48:41,351 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,351 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,352 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,353 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,353 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,353 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,354 creating build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-12T03:48:41,354 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-12T03:48:41,355 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-12T03:48:41,355 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-311/pybedtools/include 2023-09-12T03:48:41,356 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,356 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,357 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,359 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,361 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,363 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,365 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,367 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,372 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,411 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,413 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,443 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,446 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,570 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,573 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,577 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,579 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,581 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,583 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,585 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,587 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,589 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,591 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,600 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,602 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,607 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,609 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,611 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,613 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,615 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,619 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,621 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,626 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,630 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,632 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,634 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,641 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,649 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,651 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,654 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,656 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,658 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,660 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,662 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,663 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,667 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,669 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,670 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,672 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,674 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,676 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,678 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,682 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,684 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,686 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,689 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,691 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,702 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,705 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,707 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,709 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,711 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,713 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-311/pybedtools/test/data 2023-09-12T03:48:41,715 copying pybedtools/scripts/pybedtools -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts 2023-09-12T03:48:41,717 creating build/lib.linux-armv7l-cpython-311/pybedtools/scripts/examples 2023-09-12T03:48:41,719 copying pybedtools/scripts/examples/pbt_plotting_example.py -> build/lib.linux-armv7l-cpython-311/pybedtools/scripts/examples 2023-09-12T03:48:41,743 running build_ext 2023-09-12T03:48:41,749 building 'pybedtools.cbedtools' extension 2023-09-12T03:48:41,750 creating build/temp.linux-armv7l-cpython-311 2023-09-12T03:48:41,751 creating build/temp.linux-armv7l-cpython-311/pybedtools 2023-09-12T03:48:41,753 creating build/temp.linux-armv7l-cpython-311/pybedtools/include 2023-09-12T03:48:41,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.11 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-311/pybedtools/cbedtools.o 2023-09-12T03:48:42,051 pybedtools/cbedtools.cpp:225:12: fatal error: longintrepr.h: No such file or directory 2023-09-12T03:48:42,052 225 | #include "longintrepr.h" 2023-09-12T03:48:42,053 | ^~~~~~~~~~~~~~~ 2023-09-12T03:48:42,053 compilation terminated. 2023-09-12T03:48:42,056 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-12T03:48:42,171 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-12T03:48:42,184 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-12T03:48:42,184 exec(compile('"'"''"'"''"'"' 2023-09-12T03:48:42,184 # This is -- a caller that pip uses to run setup.py 2023-09-12T03:48:42,184 # 2023-09-12T03:48:42,184 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T03:48:42,184 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T03:48:42,184 # - It provides a clear error message when setuptools is not installed. 2023-09-12T03:48:42,184 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T03:48:42,184 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T03:48:42,184 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T03:48:42,184 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T03:48:42,184 import os, sys, tokenize 2023-09-12T03:48:42,184 2023-09-12T03:48:42,184 try: 2023-09-12T03:48:42,184 import setuptools 2023-09-12T03:48:42,184 except ImportError as error: 2023-09-12T03:48:42,184 print( 2023-09-12T03:48:42,184 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T03:48:42,184 "the build environment.", 2023-09-12T03:48:42,184 file=sys.stderr, 2023-09-12T03:48:42,184 ) 2023-09-12T03:48:42,184 sys.exit(1) 2023-09-12T03:48:42,184 2023-09-12T03:48:42,184 __file__ = %r 2023-09-12T03:48:42,184 sys.argv[0] = __file__ 2023-09-12T03:48:42,184 2023-09-12T03:48:42,184 if os.path.exists(__file__): 2023-09-12T03:48:42,184 filename = __file__ 2023-09-12T03:48:42,184 with tokenize.open(__file__) as f: 2023-09-12T03:48:42,184 setup_py_code = f.read() 2023-09-12T03:48:42,184 else: 2023-09-12T03:48:42,184 filename = "" 2023-09-12T03:48:42,184 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T03:48:42,184 2023-09-12T03:48:42,184 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T03:48:42,184 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-fffvy7uo[/] 2023-09-12T03:48:42,185 [bold magenta]cwd[/]: /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/ 2023-09-12T03:48:42,185 Building wheel for pybedtools (setup.py): finished with status 'error' 2023-09-12T03:48:42,187 ERROR: Failed building wheel for pybedtools 2023-09-12T03:48:42,188 Running setup.py clean for pybedtools 2023-09-12T03:48:42,189 Running command python setup.py clean 2023-09-12T03:48:42,837 /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py:55: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 2023-09-12T03:48:42,837 import pkg_resources 2023-09-12T03:48:43,227 usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] 2023-09-12T03:48:43,228 or: setup.py --help [cmd1 cmd2 ...] 2023-09-12T03:48:43,229 or: setup.py --help-commands 2023-09-12T03:48:43,230 or: setup.py cmd --help 2023-09-12T03:48:43,231 error: option --all not recognized 2023-09-12T03:48:43,338 ERROR: [present-rich] python setup.py clean exited with 1 2023-09-12T03:48:43,343 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-12T03:48:43,343 exec(compile('"'"''"'"''"'"' 2023-09-12T03:48:43,343 # This is -- a caller that pip uses to run setup.py 2023-09-12T03:48:43,343 # 2023-09-12T03:48:43,343 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T03:48:43,343 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T03:48:43,343 # - It provides a clear error message when setuptools is not installed. 2023-09-12T03:48:43,343 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T03:48:43,343 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T03:48:43,343 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T03:48:43,343 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T03:48:43,343 import os, sys, tokenize 2023-09-12T03:48:43,343 2023-09-12T03:48:43,343 try: 2023-09-12T03:48:43,343 import setuptools 2023-09-12T03:48:43,343 except ImportError as error: 2023-09-12T03:48:43,343 print( 2023-09-12T03:48:43,343 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T03:48:43,343 "the build environment.", 2023-09-12T03:48:43,343 file=sys.stderr, 2023-09-12T03:48:43,343 ) 2023-09-12T03:48:43,343 sys.exit(1) 2023-09-12T03:48:43,343 2023-09-12T03:48:43,343 __file__ = %r 2023-09-12T03:48:43,343 sys.argv[0] = __file__ 2023-09-12T03:48:43,343 2023-09-12T03:48:43,343 if os.path.exists(__file__): 2023-09-12T03:48:43,343 filename = __file__ 2023-09-12T03:48:43,343 with tokenize.open(__file__) as f: 2023-09-12T03:48:43,343 setup_py_code = f.read() 2023-09-12T03:48:43,343 else: 2023-09-12T03:48:43,343 filename = "" 2023-09-12T03:48:43,343 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T03:48:43,343 2023-09-12T03:48:43,343 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T03:48:43,343 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa/setup.py'"'"',), "", "exec"))' clean --all[/] 2023-09-12T03:48:43,344 [bold magenta]cwd[/]: /tmp/pip-wheel-v68fn6dj/pybedtools_434c37b385ca48a2950cdbded54293fa 2023-09-12T03:48:43,344 ERROR: Failed cleaning build dir for pybedtools 2023-09-12T03:48:43,346 Failed to build pybedtools 2023-09-12T03:48:43,348 ERROR: Failed to build one or more wheels 2023-09-12T03:48:43,349 Exception information: 2023-09-12T03:48:43,349 Traceback (most recent call last): 2023-09-12T03:48:43,349 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-12T03:48:43,349 status = run_func(*args) 2023-09-12T03:48:43,349 ^^^^^^^^^^^^^^^ 2023-09-12T03:48:43,349 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-12T03:48:43,349 return func(self, options, args) 2023-09-12T03:48:43,349 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T03:48:43,349 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-12T03:48:43,349 raise CommandError("Failed to build one or more wheels") 2023-09-12T03:48:43,349 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-12T03:48:43,352 Removed build tracker: '/tmp/pip-build-tracker-emgjbkrx'