2023-09-12T04:57:17,013 Created temporary directory: /tmp/pip-build-tracker-gm5lg_3j
2023-09-12T04:57:17,014 Initialized build tracking at /tmp/pip-build-tracker-gm5lg_3j
2023-09-12T04:57:17,015 Created build tracker: /tmp/pip-build-tracker-gm5lg_3j
2023-09-12T04:57:17,015 Entered build tracker: /tmp/pip-build-tracker-gm5lg_3j
2023-09-12T04:57:17,016 Created temporary directory: /tmp/pip-wheel-25gxndsr
2023-09-12T04:57:17,019 Created temporary directory: /tmp/pip-ephem-wheel-cache-bubisgj8
2023-09-12T04:57:17,040 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T04:57:17,044 2 location(s) to search for versions of py-popgen:
2023-09-12T04:57:17,044 * https://pypi.org/simple/py-popgen/
2023-09-12T04:57:17,044 * https://www.piwheels.org/simple/py-popgen/
2023-09-12T04:57:17,044 Fetching project page and analyzing links: https://pypi.org/simple/py-popgen/
2023-09-12T04:57:17,045 Getting page https://pypi.org/simple/py-popgen/
2023-09-12T04:57:17,046 Found index url https://pypi.org/simple/
2023-09-12T04:57:17,186 Fetched page https://pypi.org/simple/py-popgen/ as application/vnd.pypi.simple.v1+json
2023-09-12T04:57:17,189   Found link https://files.pythonhosted.org/packages/ef/06/30919016d98c175fa7e978a21f5d9e6a51fb0732c9d816506704cb6ea805/py-popgen-0.0.1.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.1
2023-09-12T04:57:17,190   Found link https://files.pythonhosted.org/packages/58/00/c1f0bde98f08d43f77941c57adf7d76ad7efb536bf7971a706f6cf65fc19/py-popgen-0.0.2.tar.gz (from https://pypi.org/simple/py-popgen/), version: 0.0.2
2023-09-12T04:57:17,192   Found link https://files.pythonhosted.org/packages/6c/3c/38e142063e1bf93855d1f3230be131211f779f8b117d7d72d2350befdd46/py-popgen-0.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1
2023-09-12T04:57:17,194   Found link https://files.pythonhosted.org/packages/fc/51/633c5a82433e33626559de8c18a3cbd4fa996c127e5ad6b4189e2b014432/py-popgen-0.1.1.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.1
2023-09-12T04:57:17,195   Found link https://files.pythonhosted.org/packages/5d/35/6c5a59236e0646c45b539d879678adb3d1ff418e33ccfbda03a9aef95420/py-popgen-0.1.2.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.2
2023-09-12T04:57:17,197   Found link https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.3
2023-09-12T04:57:17,199   Found link https://files.pythonhosted.org/packages/82/59/78398c3e81107c8b43ddb18d7957ba023ca534a96d3ec17ba05995cc7757/py-popgen-0.1.5.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.5
2023-09-12T04:57:17,200   Found link https://files.pythonhosted.org/packages/32/46/dc42908cc9e52642d9ea27938cd13f4d5cf7b06e0fe13680c0d2482d9cc5/py-popgen-0.1.6.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.6
2023-09-12T04:57:17,202   Found link https://files.pythonhosted.org/packages/41/b1/4391bd0ceb7049a3adf3bb0b1f6e722a50153ef8002f441aba196d95b8d5/py-popgen-0.1.7.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.7
2023-09-12T04:57:17,204   Found link https://files.pythonhosted.org/packages/b8/75/30ac9e5cffe406627a8cac665467910364be97808c17defcb42a1bf45c06/py-popgen-0.1.8.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*), version: 0.1.8
2023-09-12T04:57:17,205   Found link https://files.pythonhosted.org/packages/88/3c/6b73834e1fa600547be5f512a468b05278988b42551f60dc0ea8b9a2f4e4/py-popgen-0.1.9.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.9
2023-09-12T04:57:17,206   Found link https://files.pythonhosted.org/packages/ab/81/50731960a816f3bcc8b702f08afc519b0ddf8e24c410407d1d6df077cdbf/py-popgen-0.1.10.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.10
2023-09-12T04:57:17,207   Skipping link: No binaries permitted for py-popgen: https://files.pythonhosted.org/packages/67/60/fbff5462a4af1c54c37a10d333d2e44ee195b3f3ae78d402d41855b0ee45/py_popgen-0.1.10-py3-none-any.whl (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,208   Found link https://files.pythonhosted.org/packages/e7/d0/6b98b77af174bd0426ba17172150f14c425f719afce215ed8fda20f38365/py-popgen-0.1.11.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.11
2023-09-12T04:57:17,209   Found link https://files.pythonhosted.org/packages/65/2d/e6b28bebe9042fc9194bc2420af218acf7b7aa137b61666f7584cc6b68b8/py-popgen-0.1.12.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.12
2023-09-12T04:57:17,210   Found link https://files.pythonhosted.org/packages/6a/86/1079aa710002cd905b80f2bc21c4ac2a954f0cc09e58dbe2f9088eeeec64/py-popgen-0.1.13.tar.gz (from https://pypi.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*), version: 0.1.13
2023-09-12T04:57:17,210 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-popgen/
2023-09-12T04:57:17,211 Getting page https://www.piwheels.org/simple/py-popgen/
2023-09-12T04:57:17,212 Found index url https://www.piwheels.org/simple/
2023-09-12T04:57:17,460 Fetched page https://www.piwheels.org/simple/py-popgen/ as text/html
2023-09-12T04:57:17,469   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.13-py3-none-any.whl#sha256=9333a58eba05655f88add0c3a20bde96b15e756ea6c0d478e78359f6ca124cf0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,470   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.12-py3-none-any.whl#sha256=ef016681835a99d5e0af0fb6cda070432d646d716fdd4aecff62916bd77c0ba1 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,471   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.11-py3-none-any.whl#sha256=812806ba7c88c1a9e45717fb30aeb066aa4b138b3e981d3e154cc1fc1d9a76ab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,471   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.10-py3-none-any.whl#sha256=dbca10ee0c0fea4b850cb8d571a408da3f8e8501a722852118c4e099ef2bc06d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,472   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.9-py3-none-any.whl#sha256=92a1cdddc52cfe7105a65a9f116a71f4d68ba04de1074709f429a5e29bbffe78 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=3.6.*, !=3.8.*)
2023-09-12T04:57:17,472   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.8-py3-none-any.whl#sha256=7151406636ca48d3e7bba60587a9c89d4e935231323c7c4f2eb85ac22bbba428 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,473   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.7-py3-none-any.whl#sha256=457cbe93036871e527f2771e02d7394c994376e462fe8868f17a63b83d327e1a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,473   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.6-py3-none-any.whl#sha256=485be2f43d79836353966b8706822ccf88d09a54a2a522ca02f3fff92d70060a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,474   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.5-py3-none-any.whl#sha256=d008649d7c3824a455c7fdae3181a5097f06c36edc1423803e9f30c8bd009fa5 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,475   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv7l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,475   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp39-cp39-linux_armv6l.whl#sha256=1a6814c897aaaece70742d67a5f4c4060cbde2b995e187369eed2e13c2e1acdd (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,476   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv7l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,476   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.3-cp37-cp37m-linux_armv6l.whl#sha256=7fc03fbf75c64927a3dad988df065cba975cdb25477f40bb407b47bb29b94e8a (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,476   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv7l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,477   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp311-cp311-linux_armv6l.whl#sha256=94218c09b2bbd6f6cda4d9a0463c3633f38b1c73f2ae9fc50624dbf9b9cedf85 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,478   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv7l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,478   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp39-cp39-linux_armv6l.whl#sha256=48b48a8460c9daef39ece426ed317c744fd9fa5f0c83089ef971d7178bec21bc (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,479   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv7l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,479   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.2-cp37-cp37m-linux_armv6l.whl#sha256=22f48790eda911e1a5cd7cc7428473dcfdffa682017167c8b4e6b6cf6774654d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,480   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv7l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,481   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp311-cp311-linux_armv6l.whl#sha256=9f76e86dc83b9c84e76816419b2df52798630b229f660bcba935301d6904f1d8 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,481   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv7l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,481   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp39-cp39-linux_armv6l.whl#sha256=0138365f18eb8d38c39ff877395adee19bdfeb70457ee564d999e07be6024eab (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,482   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv7l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,482   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1.1-cp37-cp37m-linux_armv6l.whl#sha256=8f8b0e808c5bb73e80eed3ffcb8d45b8bd327d24901ece83a055fe123ee8509b (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,483   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv7l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,483   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp311-cp311-linux_armv6l.whl#sha256=ebbc1403c57d9555dd0059a251f381f04fc20d2396adeb4785d6e3d9d531efc0 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,484   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv7l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,484   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp39-cp39-linux_armv6l.whl#sha256=b0c087110c013e0d30e95ebc134ba7873a08eedd822d4346678ba0d828ba597d (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,485   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv6l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,485   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.1-cp37-cp37m-linux_armv7l.whl#sha256=92bf0666cb3a3f117b66f7260b69266203e795adef3b57e8f78b5f8973ad7319 (from https://www.piwheels.org/simple/py-popgen/) (requires-python:>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*)
2023-09-12T04:57:17,486   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.2-py3-none-any.whl#sha256=3244180ece2de707e6b164aa7ab0613b2cebd85db12b846cc163fb6cf84e474e (from https://www.piwheels.org/simple/py-popgen/)
2023-09-12T04:57:17,487   Skipping link: No binaries permitted for py-popgen: https://www.piwheels.org/simple/py-popgen/py_popgen-0.0.1-py3-none-any.whl#sha256=6a14d66683002e85987826592b3378b6479fb1ebde0c837646dd0c2adbfa59a6 (from https://www.piwheels.org/simple/py-popgen/)
2023-09-12T04:57:17,487 Skipping link: not a file: https://www.piwheels.org/simple/py-popgen/
2023-09-12T04:57:17,488 Skipping link: not a file: https://pypi.org/simple/py-popgen/
2023-09-12T04:57:17,508 Given no hashes to check 1 links for project 'py-popgen': discarding no candidates
2023-09-12T04:57:17,525 Collecting py-popgen==0.1.3
2023-09-12T04:57:17,528   Created temporary directory: /tmp/pip-unpack-jgqeos_p
2023-09-12T04:57:18,368   Downloading py-popgen-0.1.3.tar.gz (26.9 MB)
2023-09-12T04:57:28,035   Added py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-gm5lg_3j'
2023-09-12T04:57:28,037   Running setup.py (path:/tmp/pip-wheel-25gxndsr/py-popgen_e18da90ca5bc4205bb4f03fdc92aeb35/setup.py) egg_info for package py-popgen
2023-09-12T04:57:28,037   Created temporary directory: /tmp/pip-pip-egg-info-3f13cgyb
2023-09-12T04:57:28,038   Preparing metadata (setup.py): started
2023-09-12T04:57:28,040   Running command python setup.py egg_info
2023-09-12T04:57:30,195   /usr/local/lib/python3.11/dist-packages/Cython/Compiler/Main.py:384: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /tmp/pip-wheel-25gxndsr/py-popgen_e18da90ca5bc4205bb4f03fdc92aeb35/pgpipe/test_cython.pyx
2023-09-12T04:57:30,195     tree = Parsing.p_module(s, pxd, full_module_name)
2023-09-12T04:57:30,471   Compiling pgpipe/test_cython.pyx because it changed.
2023-09-12T04:57:30,472   [1/1] Cythonizing pgpipe/test_cython.pyx
2023-09-12T04:57:30,904   running egg_info
2023-09-12T04:57:30,905   creating /tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info
2023-09-12T04:57:30,930   writing /tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/PKG-INFO
2023-09-12T04:57:30,933   writing dependency_links to /tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/dependency_links.txt
2023-09-12T04:57:30,935   writing requirements to /tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/requires.txt
2023-09-12T04:57:30,936   writing top-level names to /tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/top_level.txt
2023-09-12T04:57:30,937   writing manifest file '/tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/SOURCES.txt'
2023-09-12T04:57:31,061   reading manifest file '/tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/SOURCES.txt'
2023-09-12T04:57:31,063   reading manifest template 'MANIFEST.in'
2023-09-12T04:57:31,074   writing manifest file '/tmp/pip-pip-egg-info-3f13cgyb/py_popgen.egg-info/SOURCES.txt'
2023-09-12T04:57:31,301   Preparing metadata (setup.py): finished with status 'done'
2023-09-12T04:57:31,305   Source in /tmp/pip-wheel-25gxndsr/py-popgen_e18da90ca5bc4205bb4f03fdc92aeb35 has version 0.1.3, which satisfies requirement py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz
2023-09-12T04:57:31,306   Removed py-popgen==0.1.3 from https://files.pythonhosted.org/packages/c3/80/281287a24b61a82d164b91b344c00fbc32fae7530ae8cb681352b4a62997/py-popgen-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-gm5lg_3j'
2023-09-12T04:57:31,315 Created temporary directory: /tmp/pip-unpack-sk0gzjv4
2023-09-12T04:57:31,316 Created temporary directory: /tmp/pip-unpack-vz4g4vlm
2023-09-12T04:57:31,324 Building wheels for collected packages: py-popgen
2023-09-12T04:57:31,328   Created temporary directory: /tmp/pip-wheel-2zslj059
2023-09-12T04:57:31,328   Building wheel for py-popgen (setup.py): started
2023-09-12T04:57:31,329   Destination directory: /tmp/pip-wheel-2zslj059
2023-09-12T04:57:31,330   Running command python setup.py bdist_wheel
2023-09-12T04:57:32,791   running bdist_wheel
2023-09-12T04:57:32,885   running build
2023-09-12T04:57:32,885   running build_py
2023-09-12T04:57:32,913   creating build
2023-09-12T04:57:32,913   creating build/lib.linux-armv7l-cpython-311
2023-09-12T04:57:32,914   creating build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,915   copying pgpipe/model.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,917   copying pgpipe/vcf_phase.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,920   copying pgpipe/vcf_ref_to_seq.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,922   copying pgpipe/plink.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,925   copying pgpipe/vcf_split_pysam.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,927   copying pgpipe/get_nonmissing_chunks.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,929   copying pgpipe/stat_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,932   copying pgpipe/vcf_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,934   copying pgpipe/bed_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,936   copying pgpipe/filter_single_vcf.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,938   copying pgpipe/ima3_wrapper.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,940   copying pgpipe/beagle.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,942   copying pgpipe/plink_ld.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,944   copying pgpipe/parse_functions.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,946   copying pgpipe/vcf_liftover.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,949   copying pgpipe/admixtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,951   copying pgpipe/vcf_filter_vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,954   copying pgpipe/ima_priors.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,955   copying pgpipe/__init__.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,957   copying pgpipe/vcf_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,959   copying pgpipe/admixture.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,961   copying pgpipe/four_gamete.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,965   copying pgpipe/vcf_to_ima.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,967   copying pgpipe/extend_loci.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,969   copying pgpipe/model_creator.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,971   copying pgpipe/genome_region.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,973   copying pgpipe/logging_module.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,975   copying pgpipe/bedtools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,977   copying pgpipe/convert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,979   copying pgpipe/vcf_calc.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,981   copying pgpipe/vcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,984   copying pgpipe/vcf_reader_func.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,986   copying pgpipe/vcf_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,989   copying pgpipe/subtract_bed.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,991   copying pgpipe/misc.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,992   copying pgpipe/vcf_split.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,994   copying pgpipe/bcftools.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,997   copying pgpipe/argparse_sets.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:32,998   copying pgpipe/informative_loci_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,000   copying pgpipe/fasta.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,002   copying pgpipe/model_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,004   copying pgpipe/ima_to_treemix.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,005   copying pgpipe/eigenstrat_fstats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,008   copying pgpipe/bed_invert.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,010   copying pgpipe/fasta_utilities.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,011   copying pgpipe/shapeit.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,013   copying pgpipe/graph_plotter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,015   copying pgpipe/site_stats.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,017   copying pgpipe/picard.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,019   copying pgpipe/min_pop_filter.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,021   copying pgpipe/vcf_sampler.py -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,023   running egg_info
2023-09-12T04:57:33,077   writing py_popgen.egg-info/PKG-INFO
2023-09-12T04:57:33,080   writing dependency_links to py_popgen.egg-info/dependency_links.txt
2023-09-12T04:57:33,081   writing requirements to py_popgen.egg-info/requires.txt
2023-09-12T04:57:33,083   writing top-level names to py_popgen.egg-info/top_level.txt
2023-09-12T04:57:33,110   reading manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-12T04:57:33,113   reading manifest template 'MANIFEST.in'
2023-09-12T04:57:33,130   writing manifest file 'py_popgen.egg-info/SOURCES.txt'
2023-09-12T04:57:33,132   copying pgpipe/test_cython.c -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,140   copying pgpipe/test_cython.pyx -> build/lib.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,143   running build_ext
2023-09-12T04:57:33,150   building 'pgpipe.test_cython' extension
2023-09-12T04:57:33,150   creating build/temp.linux-armv7l-cpython-311
2023-09-12T04:57:33,151   creating build/temp.linux-armv7l-cpython-311/pgpipe
2023-09-12T04:57:33,151   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pgpipe/test_cython.c -o build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o
2023-09-12T04:57:33,524   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_getAlleleCountArray’:
2023-09-12T04:57:33,526   pgpipe/test_cython.c:2802:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-12T04:57:33,527    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-12T04:57:33,527         |                 ^
2023-09-12T04:57:33,529   pgpipe/test_cython.c:2802:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-12T04:57:33,529    2802 |       (__pyx_v_d[__pyx_t_5]) = ((__pyx_v_d[__pyx_t_5]) + 1);
2023-09-12T04:57:33,530         |                                           ^
2023-09-12T04:57:33,539   pgpipe/test_cython.c: In function ‘__pyx_pf_6pgpipe_11test_cython_2getAlleleCountArraySub’:
2023-09-12T04:57:33,541   pgpipe/test_cython.c:3277:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-12T04:57:33,542    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-12T04:57:33,542         |                 ^
2023-09-12T04:57:33,544   pgpipe/test_cython.c:3277:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
2023-09-12T04:57:33,545    3277 |       (__pyx_v_d[__pyx_t_8]) = ((__pyx_v_d[__pyx_t_8]) + 1);
2023-09-12T04:57:33,545         |                                           ^
2023-09-12T04:57:36,886   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pgpipe/test_cython.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so
2023-09-12T04:57:36,988   running build_scripts
2023-09-12T04:57:36,989   creating build/scripts-3.11
2023-09-12T04:57:36,990   copying and adjusting pgpipe/vcf_filter.py -> build/scripts-3.11
2023-09-12T04:57:36,993   copying and adjusting pgpipe/vcf_calc.py -> build/scripts-3.11
2023-09-12T04:57:36,996   copying and adjusting pgpipe/vcf_split.py -> build/scripts-3.11
2023-09-12T04:57:36,998   copying and adjusting pgpipe/vcf_phase.py -> build/scripts-3.11
2023-09-12T04:57:37,001   copying and adjusting pgpipe/four_gamete.py -> build/scripts-3.11
2023-09-12T04:57:37,004   copying and adjusting pgpipe/stat_sampler.py -> build/scripts-3.11
2023-09-12T04:57:37,007   copying and adjusting pgpipe/bed_utilities.py -> build/scripts-3.11
2023-09-12T04:57:37,009   copying and adjusting pgpipe/informative_loci_filter.py -> build/scripts-3.11
2023-09-12T04:57:37,011   copying and adjusting pgpipe/convert.py -> build/scripts-3.11
2023-09-12T04:57:37,013   copying and adjusting pgpipe/vcf_to_ima.py -> build/scripts-3.11
2023-09-12T04:57:37,016   copying and adjusting pgpipe/admixture.py -> build/scripts-3.11
2023-09-12T04:57:37,018   copying and adjusting pgpipe/plink_ld.py -> build/scripts-3.11
2023-09-12T04:57:37,021   copying and adjusting pgpipe/ima3_wrapper.py -> build/scripts-3.11
2023-09-12T04:57:37,022   copying and adjusting pgpipe/eigenstrat_fstats.py -> build/scripts-3.11
2023-09-12T04:57:37,025   copying and adjusting pgpipe/vcf_liftover.py -> build/scripts-3.11
2023-09-12T04:57:37,027   copying and adjusting pgpipe/vcf_utilities.py -> build/scripts-3.11
2023-09-12T04:57:37,029   changing mode of build/scripts-3.11/vcf_filter.py from 644 to 755
2023-09-12T04:57:37,029   changing mode of build/scripts-3.11/vcf_calc.py from 644 to 755
2023-09-12T04:57:37,030   changing mode of build/scripts-3.11/vcf_split.py from 644 to 755
2023-09-12T04:57:37,031   changing mode of build/scripts-3.11/vcf_phase.py from 644 to 755
2023-09-12T04:57:37,031   changing mode of build/scripts-3.11/four_gamete.py from 644 to 755
2023-09-12T04:57:37,031   changing mode of build/scripts-3.11/stat_sampler.py from 644 to 755
2023-09-12T04:57:37,032   changing mode of build/scripts-3.11/bed_utilities.py from 644 to 755
2023-09-12T04:57:37,032   changing mode of build/scripts-3.11/informative_loci_filter.py from 644 to 755
2023-09-12T04:57:37,033   changing mode of build/scripts-3.11/convert.py from 644 to 755
2023-09-12T04:57:37,033   changing mode of build/scripts-3.11/vcf_to_ima.py from 644 to 755
2023-09-12T04:57:37,034   changing mode of build/scripts-3.11/admixture.py from 644 to 755
2023-09-12T04:57:37,035   changing mode of build/scripts-3.11/plink_ld.py from 644 to 755
2023-09-12T04:57:37,035   changing mode of build/scripts-3.11/ima3_wrapper.py from 644 to 755
2023-09-12T04:57:37,036   changing mode of build/scripts-3.11/eigenstrat_fstats.py from 644 to 755
2023-09-12T04:57:37,036   changing mode of build/scripts-3.11/vcf_liftover.py from 644 to 755
2023-09-12T04:57:37,037   changing mode of build/scripts-3.11/vcf_utilities.py from 644 to 755
2023-09-12T04:57:37,061   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-12T04:57:37,062   !!

2023-09-12T04:57:37,063           ********************************************************************************
2023-09-12T04:57:37,063           Please avoid running ``setup.py`` directly.
2023-09-12T04:57:37,064           Instead, use pypa/build, pypa/installer or other
2023-09-12T04:57:37,064           standards-based tools.

2023-09-12T04:57:37,065           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-12T04:57:37,065           ********************************************************************************

2023-09-12T04:57:37,066   !!
2023-09-12T04:57:37,067     self.initialize_options()
2023-09-12T04:57:37,085   installing to build/bdist.linux-armv7l/wheel
2023-09-12T04:57:37,086   running install
2023-09-12T04:57:37,111   running install_lib
2023-09-12T04:57:37,134   creating build/bdist.linux-armv7l
2023-09-12T04:57:37,135   creating build/bdist.linux-armv7l/wheel
2023-09-12T04:57:37,137   creating build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,138   copying build/lib.linux-armv7l-cpython-311/pgpipe/model.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,140   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_phase.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,143   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_ref_to_seq.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,145   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,147   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split_pysam.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,150   copying build/lib.linux-armv7l-cpython-311/pgpipe/get_nonmissing_chunks.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,152   copying build/lib.linux-armv7l-cpython-311/pgpipe/stat_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,155   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,157   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,160   copying build/lib.linux-armv7l-cpython-311/pgpipe/filter_single_vcf.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,162   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,164   copying build/lib.linux-armv7l-cpython-311/pgpipe/beagle.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,166   copying build/lib.linux-armv7l-cpython-311/pgpipe/plink_ld.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,169   copying build/lib.linux-armv7l-cpython-311/pgpipe/parse_functions.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,171   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,173   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,176   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter_vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,178   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_priors.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,180   copying build/lib.linux-armv7l-cpython-311/pgpipe/__init__.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,182   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,184   copying build/lib.linux-armv7l-cpython-311/pgpipe/admixture.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,186   copying build/lib.linux-armv7l-cpython-311/pgpipe/four_gamete.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,189   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,192   copying build/lib.linux-armv7l-cpython-311/pgpipe/extend_loci.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,193   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_creator.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,195   copying build/lib.linux-armv7l-cpython-311/pgpipe/genome_region.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,198   copying build/lib.linux-armv7l-cpython-311/pgpipe/logging_module.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,200   copying build/lib.linux-armv7l-cpython-311/pgpipe/bedtools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,202   copying build/lib.linux-armv7l-cpython-311/pgpipe/convert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,204   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_calc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,207   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,209   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_reader_func.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,212   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,214   copying build/lib.linux-armv7l-cpython-311/pgpipe/subtract_bed.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,216   copying build/lib.linux-armv7l-cpython-311/pgpipe/misc.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,218   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_split.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,220   copying build/lib.linux-armv7l-cpython-311/pgpipe/bcftools.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,223   copying build/lib.linux-armv7l-cpython-311/pgpipe/argparse_sets.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,225   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.pyx -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,227   copying build/lib.linux-armv7l-cpython-311/pgpipe/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,229   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,231   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.c -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,238   copying build/lib.linux-armv7l-cpython-311/pgpipe/model_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,241   copying build/lib.linux-armv7l-cpython-311/pgpipe/ima_to_treemix.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,243   copying build/lib.linux-armv7l-cpython-311/pgpipe/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,246   copying build/lib.linux-armv7l-cpython-311/pgpipe/bed_invert.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,248   copying build/lib.linux-armv7l-cpython-311/pgpipe/fasta_utilities.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,250   copying build/lib.linux-armv7l-cpython-311/pgpipe/shapeit.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,252   copying build/lib.linux-armv7l-cpython-311/pgpipe/graph_plotter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,254   copying build/lib.linux-armv7l-cpython-311/pgpipe/site_stats.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,256   copying build/lib.linux-armv7l-cpython-311/pgpipe/picard.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,258   copying build/lib.linux-armv7l-cpython-311/pgpipe/min_pop_filter.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,260   copying build/lib.linux-armv7l-cpython-311/pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,265   copying build/lib.linux-armv7l-cpython-311/pgpipe/vcf_sampler.py -> build/bdist.linux-armv7l/wheel/pgpipe
2023-09-12T04:57:37,268   running install_egg_info
2023-09-12T04:57:37,296   Copying py_popgen.egg-info to build/bdist.linux-armv7l/wheel/py_popgen-0.1.3-py3.11.egg-info
2023-09-12T04:57:37,306   running install_scripts
2023-09-12T04:57:37,307   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data
2023-09-12T04:57:37,307   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,309   copying build/scripts-3.11/vcf_phase.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,311   copying build/scripts-3.11/stat_sampler.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,314   copying build/scripts-3.11/vcf_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,316   copying build/scripts-3.11/bed_utilities.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,319   copying build/scripts-3.11/ima3_wrapper.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,321   copying build/scripts-3.11/plink_ld.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,323   copying build/scripts-3.11/vcf_liftover.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,325   copying build/scripts-3.11/admixture.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,328   copying build/scripts-3.11/four_gamete.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,330   copying build/scripts-3.11/vcf_to_ima.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,333   copying build/scripts-3.11/convert.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,335   copying build/scripts-3.11/vcf_calc.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,338   copying build/scripts-3.11/vcf_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,341   copying build/scripts-3.11/vcf_split.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,344   copying build/scripts-3.11/informative_loci_filter.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,346   copying build/scripts-3.11/eigenstrat_fstats.py -> build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts
2023-09-12T04:57:37,348   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_phase.py to 755
2023-09-12T04:57:37,349   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/stat_sampler.py to 755
2023-09-12T04:57:37,350   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_utilities.py to 755
2023-09-12T04:57:37,350   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/bed_utilities.py to 755
2023-09-12T04:57:37,351   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/ima3_wrapper.py to 755
2023-09-12T04:57:37,351   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/plink_ld.py to 755
2023-09-12T04:57:37,352   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_liftover.py to 755
2023-09-12T04:57:37,352   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/admixture.py to 755
2023-09-12T04:57:37,353   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/four_gamete.py to 755
2023-09-12T04:57:37,353   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_to_ima.py to 755
2023-09-12T04:57:37,354   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/convert.py to 755
2023-09-12T04:57:37,354   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_calc.py to 755
2023-09-12T04:57:37,355   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_filter.py to 755
2023-09-12T04:57:37,356   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/vcf_split.py to 755
2023-09-12T04:57:37,356   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/informative_loci_filter.py to 755
2023-09-12T04:57:37,357   changing mode of build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.data/scripts/eigenstrat_fstats.py to 755
2023-09-12T04:57:37,404   creating build/bdist.linux-armv7l/wheel/py_popgen-0.1.3.dist-info/WHEEL
2023-09-12T04:57:37,406   creating '/tmp/pip-wheel-2zslj059/py_popgen-0.1.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-12T04:57:37,409   adding 'pgpipe/__init__.py'
2023-09-12T04:57:37,411   adding 'pgpipe/admixtools.py'
2023-09-12T04:57:37,413   adding 'pgpipe/admixture.py'
2023-09-12T04:57:37,414   adding 'pgpipe/argparse_sets.py'
2023-09-12T04:57:37,417   adding 'pgpipe/bcftools.py'
2023-09-12T04:57:37,419   adding 'pgpipe/beagle.py'
2023-09-12T04:57:37,421   adding 'pgpipe/bed_invert.py'
2023-09-12T04:57:37,423   adding 'pgpipe/bed_utilities.py'
2023-09-12T04:57:37,424   adding 'pgpipe/bedtools.py'
2023-09-12T04:57:37,426   adding 'pgpipe/convert.py'
2023-09-12T04:57:37,429   adding 'pgpipe/eigenstrat_fstats.py'
2023-09-12T04:57:37,430   adding 'pgpipe/extend_loci.py'
2023-09-12T04:57:37,432   adding 'pgpipe/fasta.py'
2023-09-12T04:57:37,433   adding 'pgpipe/fasta_utilities.py'
2023-09-12T04:57:37,434   adding 'pgpipe/filter_single_vcf.py'
2023-09-12T04:57:37,441   adding 'pgpipe/four_gamete.py'
2023-09-12T04:57:37,445   adding 'pgpipe/genome_region.py'
2023-09-12T04:57:37,447   adding 'pgpipe/get_nonmissing_chunks.py'
2023-09-12T04:57:37,449   adding 'pgpipe/graph_plotter.py'
2023-09-12T04:57:37,451   adding 'pgpipe/ima3_wrapper.py'
2023-09-12T04:57:37,453   adding 'pgpipe/ima_priors.py'
2023-09-12T04:57:37,454   adding 'pgpipe/ima_to_treemix.py'
2023-09-12T04:57:37,457   adding 'pgpipe/informative_loci_filter.py'
2023-09-12T04:57:37,459   adding 'pgpipe/logging_module.py'
2023-09-12T04:57:37,460   adding 'pgpipe/min_pop_filter.py'
2023-09-12T04:57:37,462   adding 'pgpipe/misc.py'
2023-09-12T04:57:37,465   adding 'pgpipe/model.py'
2023-09-12T04:57:37,467   adding 'pgpipe/model_creator.py'
2023-09-12T04:57:37,470   adding 'pgpipe/model_sampler.py'
2023-09-12T04:57:37,472   adding 'pgpipe/parse_functions.py'
2023-09-12T04:57:37,474   adding 'pgpipe/picard.py'
2023-09-12T04:57:37,477   adding 'pgpipe/plink.py'
2023-09-12T04:57:37,481   adding 'pgpipe/plink_ld.py'
2023-09-12T04:57:37,483   adding 'pgpipe/shapeit.py'
2023-09-12T04:57:37,485   adding 'pgpipe/site_stats.py'
2023-09-12T04:57:37,489   adding 'pgpipe/stat_sampler.py'
2023-09-12T04:57:37,490   adding 'pgpipe/subtract_bed.py'
2023-09-12T04:57:37,527   adding 'pgpipe/test_cython.c'
2023-09-12T04:57:37,573   adding 'pgpipe/test_cython.cpython-311-arm-linux-gnueabihf.so'
2023-09-12T04:57:37,576   adding 'pgpipe/test_cython.pyx'
2023-09-12T04:57:37,580   adding 'pgpipe/vcf_calc.py'
2023-09-12T04:57:37,584   adding 'pgpipe/vcf_filter.py'
2023-09-12T04:57:37,587   adding 'pgpipe/vcf_filter_vcftools.py'
2023-09-12T04:57:37,589   adding 'pgpipe/vcf_liftover.py'
2023-09-12T04:57:37,593   adding 'pgpipe/vcf_phase.py'
2023-09-12T04:57:37,597   adding 'pgpipe/vcf_reader_func.py'
2023-09-12T04:57:37,599   adding 'pgpipe/vcf_ref_to_seq.py'
2023-09-12T04:57:37,602   adding 'pgpipe/vcf_sampler.py'
2023-09-12T04:57:37,605   adding 'pgpipe/vcf_split.py'
2023-09-12T04:57:37,607   adding 'pgpipe/vcf_split_pysam.py'
2023-09-12T04:57:37,611   adding 'pgpipe/vcf_to_ima.py'
2023-09-12T04:57:37,613   adding 'pgpipe/vcf_to_treemix.py'
2023-09-12T04:57:37,615   adding 'pgpipe/vcf_utilities.py'
2023-09-12T04:57:37,618   adding 'pgpipe/vcftools.py'
2023-09-12T04:57:37,622   adding 'py_popgen-0.1.3.data/scripts/admixture.py'
2023-09-12T04:57:37,624   adding 'py_popgen-0.1.3.data/scripts/bed_utilities.py'
2023-09-12T04:57:37,626   adding 'py_popgen-0.1.3.data/scripts/convert.py'
2023-09-12T04:57:37,629   adding 'py_popgen-0.1.3.data/scripts/eigenstrat_fstats.py'
2023-09-12T04:57:37,634   adding 'py_popgen-0.1.3.data/scripts/four_gamete.py'
2023-09-12T04:57:37,635   adding 'py_popgen-0.1.3.data/scripts/ima3_wrapper.py'
2023-09-12T04:57:37,637   adding 'py_popgen-0.1.3.data/scripts/informative_loci_filter.py'
2023-09-12T04:57:37,640   adding 'py_popgen-0.1.3.data/scripts/plink_ld.py'
2023-09-12T04:57:37,642   adding 'py_popgen-0.1.3.data/scripts/stat_sampler.py'
2023-09-12T04:57:37,646   adding 'py_popgen-0.1.3.data/scripts/vcf_calc.py'
2023-09-12T04:57:37,650   adding 'py_popgen-0.1.3.data/scripts/vcf_filter.py'
2023-09-12T04:57:37,652   adding 'py_popgen-0.1.3.data/scripts/vcf_liftover.py'
2023-09-12T04:57:37,656   adding 'py_popgen-0.1.3.data/scripts/vcf_phase.py'
2023-09-12T04:57:37,659   adding 'py_popgen-0.1.3.data/scripts/vcf_split.py'
2023-09-12T04:57:37,663   adding 'py_popgen-0.1.3.data/scripts/vcf_to_ima.py'
2023-09-12T04:57:37,665   adding 'py_popgen-0.1.3.data/scripts/vcf_utilities.py'
2023-09-12T04:57:37,667   adding 'py_popgen-0.1.3.dist-info/METADATA'
2023-09-12T04:57:37,668   adding 'py_popgen-0.1.3.dist-info/WHEEL'
2023-09-12T04:57:37,669   adding 'py_popgen-0.1.3.dist-info/top_level.txt'
2023-09-12T04:57:37,671   adding 'py_popgen-0.1.3.dist-info/RECORD'
2023-09-12T04:57:37,676   removing build/bdist.linux-armv7l/wheel
2023-09-12T04:57:37,833   Building wheel for py-popgen (setup.py): finished with status 'done'
2023-09-12T04:57:37,840   Created wheel for py-popgen: filename=py_popgen-0.1.3-cp311-cp311-linux_armv7l.whl size=381063 sha256=07620288fb87adf38d806db0782f4b4d78a4bfdc9cf3af5c84c2683dd7351d6d
2023-09-12T04:57:37,841   Stored in directory: /tmp/pip-ephem-wheel-cache-bubisgj8/wheels/b7/be/df/6ac870969f7b209a41451684ba48b2e9c1afc3af7f5f184f6a
2023-09-12T04:57:37,852 Successfully built py-popgen
2023-09-12T04:57:37,863 Removed build tracker: '/tmp/pip-build-tracker-gm5lg_3j'