2023-09-12T05:05:54,307 Created temporary directory: /tmp/pip-build-tracker-cjkn5xb6
2023-09-12T05:05:54,308 Initialized build tracking at /tmp/pip-build-tracker-cjkn5xb6
2023-09-12T05:05:54,308 Created build tracker: /tmp/pip-build-tracker-cjkn5xb6
2023-09-12T05:05:54,309 Entered build tracker: /tmp/pip-build-tracker-cjkn5xb6
2023-09-12T05:05:54,309 Created temporary directory: /tmp/pip-wheel-ziyjs43u
2023-09-12T05:05:54,312 Created temporary directory: /tmp/pip-ephem-wheel-cache-chq5e0x4
2023-09-12T05:05:54,334 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T05:05:54,338 2 location(s) to search for versions of schictools:
2023-09-12T05:05:54,338 * https://pypi.org/simple/schictools/
2023-09-12T05:05:54,338 * https://www.piwheels.org/simple/schictools/
2023-09-12T05:05:54,338 Fetching project page and analyzing links: https://pypi.org/simple/schictools/
2023-09-12T05:05:54,339 Getting page https://pypi.org/simple/schictools/
2023-09-12T05:05:54,341 Found index url https://pypi.org/simple/
2023-09-12T05:05:54,558 Fetched page https://pypi.org/simple/schictools/ as application/vnd.pypi.simple.v1+json
2023-09-12T05:05:54,560   Found link https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.1
2023-09-12T05:05:54,560   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/ec/9d17dbb761a4c9708dd4b11039636be052d0046b0e898edf3ef2d82c209d/scHiCTools-0.0.2-py3.7.egg (from https://pypi.org/simple/schictools/)
2023-09-12T05:05:54,561   Found link https://files.pythonhosted.org/packages/7a/d8/f23804803f0290950482e4500fad0f9756707ead98b04cf7218f6366979a/scHiCTools-0.0.2.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.2
2023-09-12T05:05:54,562   Found link https://files.pythonhosted.org/packages/6c/ad/aee71dfca03663492e178e39d23cba1c1f1a7baddd3bbedfcff207d346ca/scHiCTools-0.0.3.tar.gz (from https://pypi.org/simple/schictools/), version: 0.0.3
2023-09-12T05:05:54,562 Fetching project page and analyzing links: https://www.piwheels.org/simple/schictools/
2023-09-12T05:05:54,563 Getting page https://www.piwheels.org/simple/schictools/
2023-09-12T05:05:54,565 Found index url https://www.piwheels.org/simple/
2023-09-12T05:05:54,913 Fetched page https://www.piwheels.org/simple/schictools/ as text/html
2023-09-12T05:05:54,914 Skipping link: not a file: https://www.piwheels.org/simple/schictools/
2023-09-12T05:05:54,915 Skipping link: not a file: https://pypi.org/simple/schictools/
2023-09-12T05:05:54,934 Given no hashes to check 1 links for project 'schictools': discarding no candidates
2023-09-12T05:05:54,952 Collecting schictools==0.0.1
2023-09-12T05:05:54,954   Created temporary directory: /tmp/pip-unpack-o5i7e4h7
2023-09-12T05:05:55,666   Downloading scHiCTools-0.0.1.tar.gz (53 kB)
2023-09-12T05:05:55,770   Added schictools==0.0.1 from https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-cjkn5xb6'
2023-09-12T05:05:55,771   Running setup.py (path:/tmp/pip-wheel-ziyjs43u/schictools_71508977a0fb4386b044d5ce1c6e6229/setup.py) egg_info for package schictools
2023-09-12T05:05:55,772   Created temporary directory: /tmp/pip-pip-egg-info-j6fi0wa_
2023-09-12T05:05:55,773   Preparing metadata (setup.py): started
2023-09-12T05:05:55,774   Running command python setup.py egg_info
2023-09-12T05:05:56,222   Traceback (most recent call last):
2023-09-12T05:05:56,222     File "<string>", line 2, in <module>
2023-09-12T05:05:56,223     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-12T05:05:56,223     File "/tmp/pip-wheel-ziyjs43u/schictools_71508977a0fb4386b044d5ce1c6e6229/setup.py", line 21, in <module>
2023-09-12T05:05:56,224       install_requires = get_requirements('requirements.txt')
2023-09-12T05:05:56,225                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,226     File "/tmp/pip-wheel-ziyjs43u/schictools_71508977a0fb4386b044d5ce1c6e6229/setup.py", line 13, in get_requirements
2023-09-12T05:05:56,227       with open(path, "r") as fh:
2023-09-12T05:05:56,228            ^^^^^^^^^^^^^^^
2023-09-12T05:05:56,229   FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt'
2023-09-12T05:05:56,294   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-12T05:05:56,307   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-12T05:05:56,307   exec(compile('"'"''"'"''"'"'
2023-09-12T05:05:56,307   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-12T05:05:56,307   #
2023-09-12T05:05:56,307   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-12T05:05:56,307   #   import from `distutils.core` to work with newer packaging standards.
2023-09-12T05:05:56,307   # - It provides a clear error message when setuptools is not installed.
2023-09-12T05:05:56,307   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-12T05:05:56,307   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-12T05:05:56,307   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-12T05:05:56,307   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-12T05:05:56,307   import os, sys, tokenize
2023-09-12T05:05:56,307   
2023-09-12T05:05:56,307   try:
2023-09-12T05:05:56,307       import setuptools
2023-09-12T05:05:56,307   except ImportError as error:
2023-09-12T05:05:56,307       print(
2023-09-12T05:05:56,307           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-12T05:05:56,307           "the build environment.",
2023-09-12T05:05:56,307           file=sys.stderr,
2023-09-12T05:05:56,307       )
2023-09-12T05:05:56,307       sys.exit(1)
2023-09-12T05:05:56,307   
2023-09-12T05:05:56,307   __file__ = %r
2023-09-12T05:05:56,307   sys.argv[0] = __file__
2023-09-12T05:05:56,307   
2023-09-12T05:05:56,307   if os.path.exists(__file__):
2023-09-12T05:05:56,307       filename = __file__
2023-09-12T05:05:56,307       with tokenize.open(__file__) as f:
2023-09-12T05:05:56,307           setup_py_code = f.read()
2023-09-12T05:05:56,307   else:
2023-09-12T05:05:56,307       filename = "<auto-generated setuptools caller>"
2023-09-12T05:05:56,307       setup_py_code = "from setuptools import setup; setup()"
2023-09-12T05:05:56,307   
2023-09-12T05:05:56,307   exec(compile(setup_py_code, filename, "exec"))
2023-09-12T05:05:56,307   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ziyjs43u/schictools_71508977a0fb4386b044d5ce1c6e6229/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-j6fi0wa_[/]
2023-09-12T05:05:56,307   [bold magenta]cwd[/]: /tmp/pip-wheel-ziyjs43u/schictools_71508977a0fb4386b044d5ce1c6e6229/
2023-09-12T05:05:56,308   Preparing metadata (setup.py): finished with status 'error'
2023-09-12T05:05:56,309 ERROR: [present-rich] metadata generation failed
2023-09-12T05:05:56,315 Exception information:
2023-09-12T05:05:56,315 Traceback (most recent call last):
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-12T05:05:56,315     call_subprocess(
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-12T05:05:56,315     raise error
2023-09-12T05:05:56,315 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-12T05:05:56,315 
2023-09-12T05:05:56,315 The above exception was the direct cause of the following exception:
2023-09-12T05:05:56,315 
2023-09-12T05:05:56,315 Traceback (most recent call last):
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-12T05:05:56,315     status = run_func(*args)
2023-09-12T05:05:56,315              ^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-12T05:05:56,315     return func(self, options, args)
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-12T05:05:56,315     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-12T05:05:56,315                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-12T05:05:56,315     result = self._result = resolver.resolve(
2023-09-12T05:05:56,315                             ^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-12T05:05:56,315     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-12T05:05:56,315             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-12T05:05:56,315     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-12T05:05:56,315     if not criterion.candidates:
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-12T05:05:56,315     return bool(self._sequence)
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-12T05:05:56,315     return any(self)
2023-09-12T05:05:56,315            ^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-12T05:05:56,315     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-12T05:05:56,315     candidate = func()
2023-09-12T05:05:56,315                 ^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-12T05:05:56,315     self._link_candidate_cache[link] = LinkCandidate(
2023-09-12T05:05:56,315                                        ^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-12T05:05:56,315     super().__init__(
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-12T05:05:56,315     self.dist = self._prepare()
2023-09-12T05:05:56,315                 ^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-12T05:05:56,315     dist = self._prepare_distribution()
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-12T05:05:56,315     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-12T05:05:56,315     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-12T05:05:56,315     dist = _get_prepared_distribution(
2023-09-12T05:05:56,315            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-12T05:05:56,315     abstract_dist.prepare_distribution_metadata(
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-12T05:05:56,315     self.req.prepare_metadata()
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-12T05:05:56,315     self.metadata_directory = generate_metadata_legacy(
2023-09-12T05:05:56,315                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:05:56,315   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-12T05:05:56,315     raise MetadataGenerationFailed(package_details=details) from error
2023-09-12T05:05:56,315 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-12T05:05:56,328 Removed schictools==0.0.1 from https://files.pythonhosted.org/packages/a2/9f/6b20e58eed146082c6e8d14d4313a5c6043366fed84f65c3222f8d2261a0/scHiCTools-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-cjkn5xb6'
2023-09-12T05:05:57,442 Removed build tracker: '/tmp/pip-build-tracker-cjkn5xb6'