2023-09-12T05:18:07,003 Created temporary directory: /tmp/pip-build-tracker-mzlqmdcu
2023-09-12T05:18:07,004 Initialized build tracking at /tmp/pip-build-tracker-mzlqmdcu
2023-09-12T05:18:07,005 Created build tracker: /tmp/pip-build-tracker-mzlqmdcu
2023-09-12T05:18:07,005 Entered build tracker: /tmp/pip-build-tracker-mzlqmdcu
2023-09-12T05:18:07,006 Created temporary directory: /tmp/pip-wheel-vslyoonj
2023-09-12T05:18:07,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-grfggehz
2023-09-12T05:18:07,033 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T05:18:07,037 2 location(s) to search for versions of teca:
2023-09-12T05:18:07,037 * https://pypi.org/simple/teca/
2023-09-12T05:18:07,037 * https://www.piwheels.org/simple/teca/
2023-09-12T05:18:07,038 Fetching project page and analyzing links: https://pypi.org/simple/teca/
2023-09-12T05:18:07,039 Getting page https://pypi.org/simple/teca/
2023-09-12T05:18:07,040 Found index url https://pypi.org/simple/
2023-09-12T05:18:07,182 Fetched page https://pypi.org/simple/teca/ as application/vnd.pypi.simple.v1+json
2023-09-12T05:18:07,185   Found link https://files.pythonhosted.org/packages/0d/dd/3d41710a0b33186020caa67249de6bfecea84a85d2261b1b8dd835369f20/teca-2.2.1.tar.gz (from https://pypi.org/simple/teca/), version: 2.2.1
2023-09-12T05:18:07,185   Found link https://files.pythonhosted.org/packages/10/27/510206a68b8456016add7c84da0ea738229ccfd9a6eb4ee0324dff0080af/teca-2.2.2.tar.gz (from https://pypi.org/simple/teca/), version: 2.2.2
2023-09-12T05:18:07,186   Found link https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 3.0.0
2023-09-12T05:18:07,187   Found link https://files.pythonhosted.org/packages/e5/4a/820ff10f8df871229d44d74b2d31a224323e77d9f5215a2af5b4ec8f21a0/teca-4.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 4.0.0
2023-09-12T05:18:07,187   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/70/4b/3ecb17552872c808d9b3f16d428780dae6a6fbb1c3dfdf1fa7af11141f2c/teca-4.1.0-py3.9-linux-x86_64.egg (from https://pypi.org/simple/teca/)
2023-09-12T05:18:07,188   Found link https://files.pythonhosted.org/packages/5f/83/21a8fdb68f6211299f8154270d1e8dbac541f1fde15c15dde0c7cb46e143/teca-4.1.0.tar.gz (from https://pypi.org/simple/teca/), version: 4.1.0
2023-09-12T05:18:07,189   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/02/87/d3fb6e72ef7bbf27d7494c2bdb1b0ec9b345f9cf5bb981862166d7b33c2d/teca-5.0.0-py3.10-linux-x86_64.egg (from https://pypi.org/simple/teca/)
2023-09-12T05:18:07,189   Found link https://files.pythonhosted.org/packages/4b/f7/68ffe8d60a51859e31d5b5063a454354cd2a2c79440d82f7de6255a42849/teca-5.0.0.tar.gz (from https://pypi.org/simple/teca/), version: 5.0.0
2023-09-12T05:18:07,190 Fetching project page and analyzing links: https://www.piwheels.org/simple/teca/
2023-09-12T05:18:07,191 Getting page https://www.piwheels.org/simple/teca/
2023-09-12T05:18:07,192 Found index url https://www.piwheels.org/simple/
2023-09-12T05:18:07,461 Fetched page https://www.piwheels.org/simple/teca/ as text/html
2023-09-12T05:18:07,462 Skipping link: not a file: https://www.piwheels.org/simple/teca/
2023-09-12T05:18:07,463 Skipping link: not a file: https://pypi.org/simple/teca/
2023-09-12T05:18:07,482 Given no hashes to check 1 links for project 'teca': discarding no candidates
2023-09-12T05:18:07,500 Collecting teca==3.0.0
2023-09-12T05:18:07,503   Created temporary directory: /tmp/pip-unpack-hrowobre
2023-09-12T05:18:08,417   Downloading teca-3.0.0.tar.gz (447 kB)
2023-09-12T05:18:09,316   Added teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-mzlqmdcu'
2023-09-12T05:18:09,319   Running setup.py (path:/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/setup.py) egg_info for package teca
2023-09-12T05:18:09,320   Created temporary directory: /tmp/pip-pip-egg-info-0zoaax1o
2023-09-12T05:18:09,321   Preparing metadata (setup.py): started
2023-09-12T05:18:09,323   Running command python setup.py egg_info
2023-09-12T05:18:10,410   running egg_info
2023-09-12T05:18:10,412   creating /tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info
2023-09-12T05:18:10,436   writing /tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/PKG-INFO
2023-09-12T05:18:10,440   writing dependency_links to /tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/dependency_links.txt
2023-09-12T05:18:10,442   writing requirements to /tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/requires.txt
2023-09-12T05:18:10,443   writing top-level names to /tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/top_level.txt
2023-09-12T05:18:10,444   writing manifest file '/tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/SOURCES.txt'
2023-09-12T05:18:10,497   reading manifest file '/tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/SOURCES.txt'
2023-09-12T05:18:10,499   reading manifest template 'MANIFEST.in'
2023-09-12T05:18:10,654   warning: no previously-included files matching '*.pdf' found anywhere in distribution
2023-09-12T05:18:10,655   warning: no previously-included files matching '*.sw?' found anywhere in distribution
2023-09-12T05:18:10,656   adding license file 'LICENSE.md'
2023-09-12T05:18:10,667   writing manifest file '/tmp/pip-pip-egg-info-0zoaax1o/teca.egg-info/SOURCES.txt'
2023-09-12T05:18:10,778   Preparing metadata (setup.py): finished with status 'done'
2023-09-12T05:18:10,782   Source in /tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521 has version 3.0.0, which satisfies requirement teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz
2023-09-12T05:18:10,783   Removed teca==3.0.0 from https://files.pythonhosted.org/packages/5b/94/e269e3adad0096422ae240c78c5253cac9155c1e8afbdceae2218542875d/teca-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-mzlqmdcu'
2023-09-12T05:18:10,787 Created temporary directory: /tmp/pip-unpack-6acu9p8e
2023-09-12T05:18:10,788 Created temporary directory: /tmp/pip-unpack-fqy41qeh
2023-09-12T05:18:10,793 Building wheels for collected packages: teca
2023-09-12T05:18:10,797   Created temporary directory: /tmp/pip-wheel-ba_3m5af
2023-09-12T05:18:10,797   Building wheel for teca (setup.py): started
2023-09-12T05:18:10,799   Destination directory: /tmp/pip-wheel-ba_3m5af
2023-09-12T05:18:10,799   Running command python setup.py bdist_wheel
2023-09-12T05:18:11,855   running bdist_wheel
2023-09-12T05:18:11,927   running build
2023-09-12T05:18:11,928   running build_ext
2023-09-12T05:18:12,270   -- The C compiler identification is GNU 12.2.0
2023-09-12T05:18:12,607   -- The CXX compiler identification is GNU 12.2.0
2023-09-12T05:18:12,947   -- The Fortran compiler identification is GNU 12.2.0
2023-09-12T05:18:13,029   -- Detecting C compiler ABI info
2023-09-12T05:18:13,503   -- Detecting C compiler ABI info - done
2023-09-12T05:18:13,546   -- Check for working C compiler: /usr/bin/cc - skipped
2023-09-12T05:18:13,548   -- Detecting C compile features
2023-09-12T05:18:13,550   -- Detecting C compile features - done
2023-09-12T05:18:13,571   -- Detecting CXX compiler ABI info
2023-09-12T05:18:14,019   -- Detecting CXX compiler ABI info - done
2023-09-12T05:18:14,063   -- Check for working CXX compiler: /usr/bin/c++ - skipped
2023-09-12T05:18:14,065   -- Detecting CXX compile features
2023-09-12T05:18:14,068   -- Detecting CXX compile features - done
2023-09-12T05:18:14,090   -- Detecting Fortran compiler ABI info
2023-09-12T05:18:14,543   -- Detecting Fortran compiler ABI info - done
2023-09-12T05:18:14,588   -- Check for working Fortran compiler: /usr/bin/gfortran - skipped
2023-09-12T05:18:14,594   -- Configuring a Release build
2023-09-12T05:18:14,594   -- Check for c++ regex support
2023-09-12T05:18:24,223   -- Check for c++ regex support -- enabled
2023-09-12T05:18:25,287   -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1")
2023-09-12T05:18:29,530   -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1")
2023-09-12T05:18:34,313   -- Found MPI_Fortran: /usr/lib/arm-linux-gnueabihf/libmpi_usempif08.so (found version "3.1")
2023-09-12T05:18:34,314   -- Found MPI: TRUE (found version "3.1")
2023-09-12T05:18:34,316   -- MPI features -- enabled
2023-09-12T05:18:34,339   -- Could NOT find NetCDF (missing: NETCDF_LIBRARIES NETCDF_INCLUDE_DIRS)
2023-09-12T05:18:34,340   CMake Error at CMakeLists.txt:118 (message):
2023-09-12T05:18:34,340     NetCDF features -- required but not found.  set NETCDF_DIR to enable.


2023-09-12T05:18:34,343   -- Configuring incomplete, errors occurred!
2023-09-12T05:18:34,343   See also "/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/build/temp.linux-armv7l-cpython-311/CMakeFiles/CMakeOutput.log".

2023-09-12T05:18:34,362   ================================================================
2023-09-12T05:18:34,363     An error ocured building TECA. This is usually a symptom
2023-09-12T05:18:34,364     of a missing dependency. The error messages above will indicate
2023-09-12T05:18:34,364     which package is missing. Install the development package for
2023-09-12T05:18:34,365     the missing dependency using your system's package manager
2023-09-12T05:18:34,365   ================================================================

2023-09-12T05:18:34,366   Traceback (most recent call last):
2023-09-12T05:18:34,367     File "<string>", line 2, in <module>
2023-09-12T05:18:34,367     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-12T05:18:34,367     File "/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/setup.py", line 100, in <module>
2023-09-12T05:18:34,368       setup(name='teca',
2023-09-12T05:18:34,368     File "/usr/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 103, in setup
2023-09-12T05:18:34,369       return distutils.core.setup(**attrs)
2023-09-12T05:18:34,369              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:18:34,370     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 185, in setup
2023-09-12T05:18:34,371       return run_commands(dist)
2023-09-12T05:18:34,371              ^^^^^^^^^^^^^^^^^^
2023-09-12T05:18:34,372     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 201, in run_commands
2023-09-12T05:18:34,373       dist.run_commands()
2023-09-12T05:18:34,373     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 969, in run_commands
2023-09-12T05:18:34,374       self.run_command(cmd)
2023-09-12T05:18:34,374     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-12T05:18:34,375       super().run_command(command)
2023-09-12T05:18:34,375     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-12T05:18:34,376       cmd_obj.run()
2023-09-12T05:18:34,376     File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 325, in run
2023-09-12T05:18:34,377       self.run_command("build")
2023-09-12T05:18:34,378     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-12T05:18:34,380       self.distribution.run_command(command)
2023-09-12T05:18:34,381     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-12T05:18:34,382       super().run_command(command)
2023-09-12T05:18:34,382     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-12T05:18:34,383       cmd_obj.run()
2023-09-12T05:18:34,384     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 131, in run
2023-09-12T05:18:34,385       self.run_command(cmd_name)
2023-09-12T05:18:34,386     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 318, in run_command
2023-09-12T05:18:34,387       self.distribution.run_command(command)
2023-09-12T05:18:34,388     File "/usr/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1001, in run_command
2023-09-12T05:18:34,389       super().run_command(command)
2023-09-12T05:18:34,390     File "/usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 988, in run_command
2023-09-12T05:18:34,390       cmd_obj.run()
2023-09-12T05:18:34,391     File "/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/setup.py", line 34, in run
2023-09-12T05:18:34,392       self.build_extension(ext)
2023-09-12T05:18:34,392     File "/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/setup.py", line 75, in build_extension
2023-09-12T05:18:34,393       subprocess.check_call(['cmake', ext.sourcedir] + cmake_args, cwd=self.build_temp)
2023-09-12T05:18:34,394     File "/usr/lib/python3.11/subprocess.py", line 413, in check_call
2023-09-12T05:18:34,395       raise CalledProcessError(retcode, cmd)
2023-09-12T05:18:34,395   subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521', '-DCMAKE_INSTALL_PREFIX=/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/build/lib.linux-armv7l-cpython-311/teca', '-DLIB_PREFIX=.', '-DREQUIRE_PYTHON=TRUE', '-DREQUIRE_MPI=TRUE', '-DREQUIRE_UDUNITS=TRUE', '-DREQUIRE_NETCDF=TRUE', '-DREQUIRE_BOOST=TRUE', '-DTECA_PYTHON_VERSION=3', '-DTECA_VERSION=3.0.0(PyPi)', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1.
2023-09-12T05:18:34,489   ERROR: [present-rich] python setup.py bdist_wheel exited with 1
2023-09-12T05:18:34,502   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2023-09-12T05:18:34,502   exec(compile('"'"''"'"''"'"'
2023-09-12T05:18:34,502   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-12T05:18:34,502   #
2023-09-12T05:18:34,502   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-12T05:18:34,502   #   import from `distutils.core` to work with newer packaging standards.
2023-09-12T05:18:34,502   # - It provides a clear error message when setuptools is not installed.
2023-09-12T05:18:34,502   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-12T05:18:34,502   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-12T05:18:34,502   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-12T05:18:34,502   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-12T05:18:34,502   import os, sys, tokenize
2023-09-12T05:18:34,502   
2023-09-12T05:18:34,502   try:
2023-09-12T05:18:34,502       import setuptools
2023-09-12T05:18:34,502   except ImportError as error:
2023-09-12T05:18:34,502       print(
2023-09-12T05:18:34,502           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-12T05:18:34,502           "the build environment.",
2023-09-12T05:18:34,502           file=sys.stderr,
2023-09-12T05:18:34,502       )
2023-09-12T05:18:34,502       sys.exit(1)
2023-09-12T05:18:34,502   
2023-09-12T05:18:34,502   __file__ = %r
2023-09-12T05:18:34,502   sys.argv[0] = __file__
2023-09-12T05:18:34,502   
2023-09-12T05:18:34,502   if os.path.exists(__file__):
2023-09-12T05:18:34,502       filename = __file__
2023-09-12T05:18:34,502       with tokenize.open(__file__) as f:
2023-09-12T05:18:34,502           setup_py_code = f.read()
2023-09-12T05:18:34,502   else:
2023-09-12T05:18:34,502       filename = "<auto-generated setuptools caller>"
2023-09-12T05:18:34,502       setup_py_code = "from setuptools import setup; setup()"
2023-09-12T05:18:34,502   
2023-09-12T05:18:34,502   exec(compile(setup_py_code, filename, "exec"))
2023-09-12T05:18:34,502   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-ba_3m5af[/]
2023-09-12T05:18:34,503   [bold magenta]cwd[/]: /tmp/pip-wheel-vslyoonj/teca_5eae6105722b4e618b98886e59eda521/
2023-09-12T05:18:34,504   Building wheel for teca (setup.py): finished with status 'error'
2023-09-12T05:18:34,505   ERROR: Failed building wheel for teca
2023-09-12T05:18:34,506   Running setup.py clean for teca
2023-09-12T05:18:34,507   Running command python setup.py clean
2023-09-12T05:18:35,578   running clean
2023-09-12T05:18:35,627   removing 'build/temp.linux-armv7l-cpython-311' (and everything under it)
2023-09-12T05:18:35,643   'build/lib.linux-armv7l-cpython-311' does not exist -- can't clean it
2023-09-12T05:18:35,643   'build/bdist.linux-armv7l' does not exist -- can't clean it
2023-09-12T05:18:35,644   'build/scripts-3.11' does not exist -- can't clean it
2023-09-12T05:18:35,644   removing 'build'
2023-09-12T05:18:35,753 Failed to build teca
2023-09-12T05:18:35,754 ERROR: Failed to build one or more wheels
2023-09-12T05:18:35,756 Exception information:
2023-09-12T05:18:35,756 Traceback (most recent call last):
2023-09-12T05:18:35,756   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-12T05:18:35,756     status = run_func(*args)
2023-09-12T05:18:35,756              ^^^^^^^^^^^^^^^
2023-09-12T05:18:35,756   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-12T05:18:35,756     return func(self, options, args)
2023-09-12T05:18:35,756            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T05:18:35,756   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run
2023-09-12T05:18:35,756     raise CommandError("Failed to build one or more wheels")
2023-09-12T05:18:35,756 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-09-12T05:18:35,759 Removed build tracker: '/tmp/pip-build-tracker-mzlqmdcu'