2023-09-12T07:17:01,618 Created temporary directory: /tmp/pip-build-tracker-qbvk0c7r 2023-09-12T07:17:01,619 Initialized build tracking at /tmp/pip-build-tracker-qbvk0c7r 2023-09-12T07:17:01,619 Created build tracker: /tmp/pip-build-tracker-qbvk0c7r 2023-09-12T07:17:01,620 Entered build tracker: /tmp/pip-build-tracker-qbvk0c7r 2023-09-12T07:17:01,621 Created temporary directory: /tmp/pip-wheel-h5qe625a 2023-09-12T07:17:01,624 Created temporary directory: /tmp/pip-ephem-wheel-cache-579nze86 2023-09-12T07:17:01,647 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-12T07:17:01,651 2 location(s) to search for versions of camembert-bri: 2023-09-12T07:17:01,651 * https://pypi.org/simple/camembert-bri/ 2023-09-12T07:17:01,651 * https://www.piwheels.org/simple/camembert-bri/ 2023-09-12T07:17:01,652 Fetching project page and analyzing links: https://pypi.org/simple/camembert-bri/ 2023-09-12T07:17:01,652 Getting page https://pypi.org/simple/camembert-bri/ 2023-09-12T07:17:01,654 Found index url https://pypi.org/simple/ 2023-09-12T07:17:01,900 Fetched page https://pypi.org/simple/camembert-bri/ as application/vnd.pypi.simple.v1+json 2023-09-12T07:17:01,903 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/44/90/d5e349f0e8f988d931e34ddd25e40c548c408365d2a9a7da1c86890683c4/camembert_bri-0.0.1-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,904 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/c0/6c/e63d4c0b6d6f28a77baf19763b050dfb873ed76b5c85b8536b024dcaf092/camembert_bri-0.0.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,904 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/84/d8/d43f35f6ff2a7aaaf37b126579ea5fbccca3b0cf486ec4cba2d86d2b8346/camembert_bri-0.0.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,905 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/0e/bb/0cbaa87087e0141153132f7230c359e12ce96a6f652dca0159b3d90a7816/camembert_bri-0.0.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,905 Found link https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz (from https://pypi.org/simple/camembert-bri/), version: 0.0.2 2023-09-12T07:17:01,906 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/d9/67/c4196e4314f1158119bf1b9c8fc03a979b65c28ab93038d2d2d60b87fd9f/camembert_bri-0.0.2-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,907 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/b9/65/8b5649138088ee2f5577d7a52b468fafa6138c5585913004b466bac46136/camembert_bri-0.0.2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,907 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/fe/c9/3b009c45978512a6004fb25d840dedf8920e246d37b0dc4eb98faf43f08a/camembert_bri-0.0.2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,908 Skipping link: No binaries permitted for camembert-bri: https://files.pythonhosted.org/packages/44/80/fa632a7e595469b98f585d90b905f09f8f876bfeadd18ff8bc98b7a1aa8f/camembert_bri-0.0.2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/camembert-bri/) 2023-09-12T07:17:01,908 Fetching project page and analyzing links: https://www.piwheels.org/simple/camembert-bri/ 2023-09-12T07:17:01,909 Getting page https://www.piwheels.org/simple/camembert-bri/ 2023-09-12T07:17:01,910 Found index url https://www.piwheels.org/simple/ 2023-09-12T07:17:02,276 Fetched page https://www.piwheels.org/simple/camembert-bri/ as text/html 2023-09-12T07:17:02,277 Skipping link: not a file: https://www.piwheels.org/simple/camembert-bri/ 2023-09-12T07:17:02,278 Skipping link: not a file: https://pypi.org/simple/camembert-bri/ 2023-09-12T07:17:02,296 Given no hashes to check 1 links for project 'camembert-bri': discarding no candidates 2023-09-12T07:17:02,314 Collecting camembert-bri==0.0.2 2023-09-12T07:17:02,316 Created temporary directory: /tmp/pip-unpack-erng1wi4 2023-09-12T07:17:02,528 Downloading camembert-bri-0.0.2.tar.gz (58 kB) 2023-09-12T07:17:02,631 Added camembert-bri==0.0.2 from https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-qbvk0c7r' 2023-09-12T07:17:02,633 Running setup.py (path:/tmp/pip-wheel-h5qe625a/camembert-bri_5e2a966156ab4c99879e04ce6b624d20/setup.py) egg_info for package camembert-bri 2023-09-12T07:17:02,634 Created temporary directory: /tmp/pip-pip-egg-info-nnr4xl63 2023-09-12T07:17:02,634 Preparing metadata (setup.py): started 2023-09-12T07:17:02,635 Running command python setup.py egg_info 2023-09-12T07:17:03,096 Traceback (most recent call last): 2023-09-12T07:17:03,096 File "", line 2, in 2023-09-12T07:17:03,097 File "", line 34, in 2023-09-12T07:17:03,097 File "/tmp/pip-wheel-h5qe625a/camembert-bri_5e2a966156ab4c99879e04ce6b624d20/setup.py", line 5, in 2023-09-12T07:17:03,098 import pysam 2023-09-12T07:17:03,099 ModuleNotFoundError: No module named 'pysam' 2023-09-12T07:17:03,165 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-12T07:17:03,178 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-12T07:17:03,178 exec(compile('"'"''"'"''"'"' 2023-09-12T07:17:03,178 # This is -- a caller that pip uses to run setup.py 2023-09-12T07:17:03,178 # 2023-09-12T07:17:03,178 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-12T07:17:03,178 # import from `distutils.core` to work with newer packaging standards. 2023-09-12T07:17:03,178 # - It provides a clear error message when setuptools is not installed. 2023-09-12T07:17:03,178 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-12T07:17:03,178 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-12T07:17:03,178 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-12T07:17:03,178 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-12T07:17:03,178 import os, sys, tokenize 2023-09-12T07:17:03,178 2023-09-12T07:17:03,178 try: 2023-09-12T07:17:03,178 import setuptools 2023-09-12T07:17:03,178 except ImportError as error: 2023-09-12T07:17:03,178 print( 2023-09-12T07:17:03,178 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-12T07:17:03,178 "the build environment.", 2023-09-12T07:17:03,178 file=sys.stderr, 2023-09-12T07:17:03,178 ) 2023-09-12T07:17:03,178 sys.exit(1) 2023-09-12T07:17:03,178 2023-09-12T07:17:03,178 __file__ = %r 2023-09-12T07:17:03,178 sys.argv[0] = __file__ 2023-09-12T07:17:03,178 2023-09-12T07:17:03,178 if os.path.exists(__file__): 2023-09-12T07:17:03,178 filename = __file__ 2023-09-12T07:17:03,178 with tokenize.open(__file__) as f: 2023-09-12T07:17:03,178 setup_py_code = f.read() 2023-09-12T07:17:03,178 else: 2023-09-12T07:17:03,178 filename = "" 2023-09-12T07:17:03,178 setup_py_code = "from setuptools import setup; setup()" 2023-09-12T07:17:03,178 2023-09-12T07:17:03,178 exec(compile(setup_py_code, filename, "exec")) 2023-09-12T07:17:03,178 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-h5qe625a/camembert-bri_5e2a966156ab4c99879e04ce6b624d20/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-nnr4xl63[/] 2023-09-12T07:17:03,179 [bold magenta]cwd[/]: /tmp/pip-wheel-h5qe625a/camembert-bri_5e2a966156ab4c99879e04ce6b624d20/ 2023-09-12T07:17:03,179 Preparing metadata (setup.py): finished with status 'error' 2023-09-12T07:17:03,181 ERROR: [present-rich] metadata generation failed 2023-09-12T07:17:03,186 Exception information: 2023-09-12T07:17:03,186 Traceback (most recent call last): 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-12T07:17:03,186 call_subprocess( 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-12T07:17:03,186 raise error 2023-09-12T07:17:03,186 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-12T07:17:03,186 2023-09-12T07:17:03,186 The above exception was the direct cause of the following exception: 2023-09-12T07:17:03,186 2023-09-12T07:17:03,186 Traceback (most recent call last): 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-12T07:17:03,186 status = run_func(*args) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-12T07:17:03,186 return func(self, options, args) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-12T07:17:03,186 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-12T07:17:03,186 result = self._result = resolver.resolve( 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-12T07:17:03,186 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-12T07:17:03,186 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-12T07:17:03,186 if not criterion.candidates: 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-12T07:17:03,186 return bool(self._sequence) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-12T07:17:03,186 return any(self) 2023-09-12T07:17:03,186 ^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-12T07:17:03,186 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-12T07:17:03,186 candidate = func() 2023-09-12T07:17:03,186 ^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-12T07:17:03,186 self._link_candidate_cache[link] = LinkCandidate( 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-12T07:17:03,186 super().__init__( 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-12T07:17:03,186 self.dist = self._prepare() 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-12T07:17:03,186 dist = self._prepare_distribution() 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-12T07:17:03,186 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-12T07:17:03,186 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-12T07:17:03,186 dist = _get_prepared_distribution( 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-12T07:17:03,186 abstract_dist.prepare_distribution_metadata( 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-12T07:17:03,186 self.req.prepare_metadata() 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-12T07:17:03,186 self.metadata_directory = generate_metadata_legacy( 2023-09-12T07:17:03,186 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-12T07:17:03,186 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-12T07:17:03,186 raise MetadataGenerationFailed(package_details=details) from error 2023-09-12T07:17:03,186 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-12T07:17:03,199 Removed camembert-bri==0.0.2 from https://files.pythonhosted.org/packages/2d/69/9454289f9b700cd557fe3a7eb2507e537c753da8f9e4e4c5f06fed40c525/camembert-bri-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-qbvk0c7r' 2023-09-12T07:17:03,200 Removed build tracker: '/tmp/pip-build-tracker-qbvk0c7r'