2023-09-12T10:22:32,457 Created temporary directory: /tmp/pip-build-tracker-vdaa3o1r
2023-09-12T10:22:32,458 Initialized build tracking at /tmp/pip-build-tracker-vdaa3o1r
2023-09-12T10:22:32,458 Created build tracker: /tmp/pip-build-tracker-vdaa3o1r
2023-09-12T10:22:32,459 Entered build tracker: /tmp/pip-build-tracker-vdaa3o1r
2023-09-12T10:22:32,460 Created temporary directory: /tmp/pip-wheel-c5fooxbt
2023-09-12T10:22:32,463 Created temporary directory: /tmp/pip-ephem-wheel-cache-9f9rjfah
2023-09-12T10:22:32,487 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T10:22:32,491 2 location(s) to search for versions of uta-align:
2023-09-12T10:22:32,491 * https://pypi.org/simple/uta-align/
2023-09-12T10:22:32,491 * https://www.piwheels.org/simple/uta-align/
2023-09-12T10:22:32,492 Fetching project page and analyzing links: https://pypi.org/simple/uta-align/
2023-09-12T10:22:32,493 Getting page https://pypi.org/simple/uta-align/
2023-09-12T10:22:32,494 Found index url https://pypi.org/simple/
2023-09-12T10:22:32,635 Fetched page https://pypi.org/simple/uta-align/ as application/vnd.pypi.simple.v1+json
2023-09-12T10:22:32,640   Found link https://files.pythonhosted.org/packages/60/a2/47df4fbbbf9800199f0b9363ba2b02c7f234d074ad2693d09cb499a18b2f/uta-align-0.0.1dev-c749ca8b22a0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.0.1dev-c749ca8b22a0
2023-09-12T10:22:32,641   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/08/ed/16116fd416d69101c3cda7290be8a3a4f82f9d3c9e7902c783633ed78f21/uta_align-0.0.1dev_c749ca8b22a0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,642   Found link https://files.pythonhosted.org/packages/c5/c4/e4c65f29cdbcec6ec0269ae305bba6b2a228ff67699de315154dcda99f68/uta-align-0.1.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.0
2023-09-12T10:22:32,642   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/66/50/0cf3cc125b6ba7ad99012bedf436c15e56cdf19c677edd4d25f24c51cfe2/uta_align-0.1.0-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,643   Found link https://files.pythonhosted.org/packages/f5/7f/c7c7d3043fa52fe7d6c8d3a870409f9cc9126ca11c113ca05bcd889a123d/uta-align-0.1.2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.2
2023-09-12T10:22:32,644   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/fe/38/a811e7ea2cfa3d1447302b1e0bf650a6b7394c85a308416ae9acbde5c0b9/uta_align-0.1.2-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,644   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c8/ef/d709856489d8883fa96dfa2732a7cdf33a2b6eb7319e2d8f245e1fbe299a/uta_align-0.1.4-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,645   Found link https://files.pythonhosted.org/packages/4f/98/6c282d715088d99d0e4ad4574bd7ae06ae0157f9b4c94843bf215a2b13fd/uta-align-0.1.5.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.5
2023-09-12T10:22:32,645   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d3/86/7a17a92e6730db93d570dde8d4f6ed2ebde235a4a2b1067fe41aa73e6d56/uta_align-0.1.5-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,646   Found link https://files.pythonhosted.org/packages/20/a0/944d267127f1cc2b188f8afbc3684232ebd576ccad97cec399179f29ada3/uta-align-0.1.6.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.6
2023-09-12T10:22:32,647   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/79/ab5ccbbf4854c8dc038871306dccb76e18680581267e876528f829089b6a/uta_align-0.1.6-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,647   Found link https://files.pythonhosted.org/packages/42/c0/9999b551deffc63c27066cffdac0c2bdd6413d3741b775a6f0441ce82c94/uta-align-0.1.7.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.7
2023-09-12T10:22:32,648   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8a/fc/a620e23d04f03f60881831b48f4e05e3fbd8b8cd9c797b06245f7783d8b4/uta_align-0.1.7-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,649   Found link https://files.pythonhosted.org/packages/f1/f2/ae2c44e1009a4c94be0a228a17ba41327cbb14ca4d205b9d30a6d03907e0/uta-align-0.1.8.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.8
2023-09-12T10:22:32,649   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/e1/dfb0593828e024c1a8c1b40539a892d613a52221deec59e1916e6271c49d/uta_align-0.1.8-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,650   Found link https://files.pythonhosted.org/packages/53/9a/f8e1cab0dc5e7f59277cad128fcead3897c03c74c743b6ef05927a49914e/uta-align-0.1.9.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.9
2023-09-12T10:22:32,650   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/12/b6/bedbe1aa646f76d72de5a2e269b0771d04704ab97be399ebe34a7b4a31ac/uta_align-0.1.9-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,651   Found link https://files.pythonhosted.org/packages/94/6b/0b73dc6d3391468e9d5229a262129763672296d41f1a26d4f128c66a99dd/uta-align-0.1.10.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.10
2023-09-12T10:22:32,651   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/af/ec/2ec104fea2c5ad78e85b77df92d92a77c75fca18b9fd5efe75e970c4d6ed/uta_align-0.1.10-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,652   Found link https://files.pythonhosted.org/packages/46/1c/47de77a2b89f0339022a5ae5a03f4a919f1afa18d47b5640c3e87c0f5e68/uta-align-0.1.11.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.1.11
2023-09-12T10:22:32,653   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/dd/a7/46496d2d48416e55e45b4f7a77103d53a80f9165552d81ffba27e51ff99b/uta_align-0.1.11-py2.7-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,653   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0f/7c/ffe50738dd367f7378193f892584392015f4b62aa3ebce7ff721b0cddbc4/uta_align-0.1.11-py3.6-linux-x86_64.egg (from https://pypi.org/simple/uta-align/)
2023-09-12T10:22:32,654   Found link https://files.pythonhosted.org/packages/0f/a2/e6bdd37d746c294c7a6374664078ecf2d34677b52c5267ff0576f669eb15/uta-align-0.2.0a1.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a1
2023-09-12T10:22:32,654   Found link https://files.pythonhosted.org/packages/7c/07/3d0483101728198e619f9d45552d2d50dc90fc2937964a899e6fe3908687/uta-align-0.2.0a2.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a2
2023-09-12T10:22:32,655   Found link https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0a3
2023-09-12T10:22:32,656   Found link https://files.pythonhosted.org/packages/64/bc/5306c731e7d4d304e9d1f7fee2a8fa1d79640626ccaac9f9df660078893c/uta-align-0.2.0.tar.gz (from https://pypi.org/simple/uta-align/), version: 0.2.0
2023-09-12T10:22:32,656 Fetching project page and analyzing links: https://www.piwheels.org/simple/uta-align/
2023-09-12T10:22:32,657 Getting page https://www.piwheels.org/simple/uta-align/
2023-09-12T10:22:32,658 Found index url https://www.piwheels.org/simple/
2023-09-12T10:22:33,976 Fetched page https://www.piwheels.org/simple/uta-align/ as text/html
2023-09-12T10:22:33,992   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv6l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,993   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.1.11-cp39-cp39-linux_armv7l.whl#sha256=827c85ef70c500f1f1043097ddab023e02a866f3aa00719c37f486bb07bdc76f (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,994   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv6l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,995   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp35-cp35m-linux_armv7l.whl#sha256=dae4936aefa1312d72056637cd86114fe7343d74171802cfd626b4df74e3fc1e (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,996   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv6l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,996   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp37-cp37m-linux_armv7l.whl#sha256=42d546e097c14adde7bcdc285512044c928ccf557dc96029a4205f3c86f271a3 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,997   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv6l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,998   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0-cp39-cp39-linux_armv7l.whl#sha256=63c55627e235d6e95ecee14361b3e51f02fc7dbe1257875f66bd870a2d86e251 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,999   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:33,999   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=9557dfb5280a0929438f9a71f5bf321a29ce6a090b4e6242baf364fa80204c54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,000   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv6l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,001   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp37-cp37m-linux_armv7l.whl#sha256=66ebdb1248c86c01cc3714d7c0ec736ebf9c6934dd3ae0c581b54d58d3088331 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,002   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv6l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,003   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a1-cp39-cp39-linux_armv7l.whl#sha256=18908072448c5f15e1b8cefb1071b1b6782fe15aca7f97830a79a154fb4d9e19 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,004   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv6l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,005   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp35-cp35m-linux_armv7l.whl#sha256=8792ceb53aedebed753c74410a34ed1c5ad088acc434f4527f4158c05e1f6033 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,006   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv6l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,007   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp37-cp37m-linux_armv7l.whl#sha256=0decd7a6fdbfca278e7d48d0c4365fe413ba471b43c3e9c8ad023bf91157be34 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,008   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv6l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,008   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a2-cp39-cp39-linux_armv7l.whl#sha256=fc0523694bebe8202661746996848de4787dd23c86aedac17cc56d3958f26d54 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,009   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv6l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,010   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp35-cp35m-linux_armv7l.whl#sha256=3cb8658cec7e6bb1820937b5b58d040d7bcdafeae9fd8d1d0efe5f32c532e4cf (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,011   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv6l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,011   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp37-cp37m-linux_armv7l.whl#sha256=b6eb04dfeab677556b95759aee55039d3e8d1bc2a65eaa0b266248cfd5300992 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,012   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv6l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,013   Skipping link: No binaries permitted for uta-align: https://www.piwheels.org/simple/uta-align/uta_align-0.2.0a3-cp39-cp39-linux_armv7l.whl#sha256=f07b67d97fc9a29b300ced5f81b287e6a0fd8638ce93e936705a2c184af86865 (from https://www.piwheels.org/simple/uta-align/)
2023-09-12T10:22:34,014 Skipping link: not a file: https://www.piwheels.org/simple/uta-align/
2023-09-12T10:22:34,015 Skipping link: not a file: https://pypi.org/simple/uta-align/
2023-09-12T10:22:34,057 Given no hashes to check 1 links for project 'uta-align': discarding no candidates
2023-09-12T10:22:34,080 Collecting uta-align==0.2.0a3
2023-09-12T10:22:34,082   Created temporary directory: /tmp/pip-unpack-yxvaov5q
2023-09-12T10:22:34,381   Downloading uta-align-0.2.0a3.tar.gz (267 kB)
2023-09-12T10:22:34,571   Added uta-align==0.2.0a3 from https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz to build tracker '/tmp/pip-build-tracker-vdaa3o1r'
2023-09-12T10:22:34,580   Created temporary directory: /tmp/pip-build-env-6ojsm30t
2023-09-12T10:22:34,584   Installing build dependencies: started
2023-09-12T10:22:34,586   Running command pip subprocess to install build dependencies
2023-09-12T10:22:35,744   Using pip 23.2.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-09-12T10:22:36,239   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-12T10:22:38,212   Collecting cython>=0.29
2023-09-12T10:22:38,213     Obtaining dependency information for cython>=0.29 from https://files.pythonhosted.org/packages/03/e9/9cc0c4f0d8a566089d096254cd25168a0db02dd047863a7f995d8d3eefa7/Cython-3.0.2-py2.py3-none-any.whl.metadata
2023-09-12T10:22:38,219     Using cached Cython-3.0.2-py2.py3-none-any.whl.metadata (3.1 kB)
2023-09-12T10:22:38,282   Collecting cython-setuptools
2023-09-12T10:22:38,291     Downloading https://www.piwheels.org/simple/cython-setuptools/cython_setuptools-0.2.3-py3-none-any.whl (9.7 kB)
2023-09-12T10:22:38,592   Collecting pysam>=0.15
2023-09-12T10:22:38,593     Using cached pysam-0.21.0-cp311-cp311-linux_armv7l.whl
2023-09-12T10:22:39,890   Collecting setuptools>=45
2023-09-12T10:22:39,891     Obtaining dependency information for setuptools>=45 from https://files.pythonhosted.org/packages/95/79/6b47c6a872b40743a480687dc0c79ffb4202710789f3e4d54a84fff8b550/setuptools-68.2.1-py3-none-any.whl.metadata
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2023-09-12T10:22:43,628     Obtaining dependency information for virtualenv>=20.24.3 from https://files.pythonhosted.org/packages/4e/8b/f0d3a468c0186c603217a6656ea4f49259630e8ed99558501d92f6ff7dc3/virtualenv-20.24.5-py3-none-any.whl.metadata
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2023-09-12T10:22:47,149   Installing collected packages: distlib, wheel, typing-extensions, setuptools, pluggy, platformdirs, packaging, filelock, cython, colorama, click, chardet, cachetools, virtualenv, setuptools_scm, pysam, pyproject-api, cython-setuptools, tox
2023-09-12T10:22:47,697     Creating /tmp/pip-build-env-6ojsm30t/overlay/local/bin
2023-09-12T10:22:47,699     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/wheel to 755
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2023-09-12T10:22:53,202     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/cython to 755
2023-09-12T10:22:53,204     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/cythonize to 755
2023-09-12T10:22:54,487     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/chardetect to 755
2023-09-12T10:22:55,198     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/virtualenv to 755
2023-09-12T10:22:57,898     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/cython-setuptools to 755
2023-09-12T10:22:58,591     changing mode of /tmp/pip-build-env-6ojsm30t/overlay/local/bin/tox to 755
2023-09-12T10:22:58,852   Successfully installed cachetools-5.3.1 chardet-5.2.0 click-8.1.7 colorama-0.4.6 cython-3.0.2 cython-setuptools-0.2.3 distlib-0.3.7 filelock-3.12.3 packaging-23.1 platformdirs-3.10.0 pluggy-1.3.0 pyproject-api-1.6.1 pysam-0.21.0 setuptools-68.2.1 setuptools_scm-7.1.0 tox-4.11.3 typing-extensions-4.7.1 virtualenv-20.24.5 wheel-0.41.2
2023-09-12T10:22:59,516   Installing build dependencies: finished with status 'done'
2023-09-12T10:22:59,520   Getting requirements to build wheel: started
2023-09-12T10:22:59,521   Running command Getting requirements to build wheel
2023-09-12T10:23:10,241   warning: uta_align/align/cigar_utils.pyx:23:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
2023-09-12T10:23:10,242   warning: uta_align/align/cigar_utils.pyx:24:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310

2023-09-12T10:23:10,533   Error compiling Cython file:
2023-09-12T10:23:10,533   ------------------------------------------------------------
2023-09-12T10:23:10,534   ...
2023-09-12T10:23:10,535   INSERTION.inverse     = DELETION
2023-09-12T10:23:10,536   DELETION.inverse      = INSERTION
2023-09-12T10:23:10,536   SEQ_MATCH.inverse     = SEQ_MATCH
2023-09-12T10:23:10,537   SEQ_MISMATCH.inverse  = SEQ_MISMATCH

2023-09-12T10:23:10,538   cpdef tuple BAM_OPS = (MATCH, INSERTION, DELETION, SKIPPED, SOFT_CLIP, HARD_CLIP, PADDING, SEQ_MATCH, SEQ_MISMATCH)
2023-09-12T10:23:10,539         ^
2023-09-12T10:23:10,540   ------------------------------------------------------------

2023-09-12T10:23:10,541   uta_align/align/cigar_utils.pyx:62:6: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.

2023-09-12T10:23:10,543   Error compiling Cython file:
2023-09-12T10:23:10,543   ------------------------------------------------------------
2023-09-12T10:23:10,543   ...
2023-09-12T10:23:10,544   # Create mapping from ord(char_op) to op
2023-09-12T10:23:10,544   _temp_map = [None]*256
2023-09-12T10:23:10,545   for _op in BAM_OPS:
2023-09-12T10:23:10,545       _temp_map[_op.code] = _op

2023-09-12T10:23:10,546   cpdef tuple BAM_OP_CHAR_MAP = tuple(_temp_map)
2023-09-12T10:23:10,547         ^
2023-09-12T10:23:10,547   ------------------------------------------------------------

2023-09-12T10:23:10,548   uta_align/align/cigar_utils.pyx:69:6: Variables cannot be declared with 'cpdef'. Use 'cdef' instead.
2023-09-12T10:23:11,075   Compiling uta_align/align/algorithms.pyx because it changed.
2023-09-12T10:23:11,076   Compiling uta_align/align/cigar_utils.pyx because it changed.
2023-09-12T10:23:11,076   [1/2] Cythonizing uta_align/align/algorithms.pyx
2023-09-12T10:23:11,077   [2/2] Cythonizing uta_align/align/cigar_utils.pyx
2023-09-12T10:23:11,077   Traceback (most recent call last):
2023-09-12T10:23:11,078     File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
2023-09-12T10:23:11,078       main()
2023-09-12T10:23:11,079     File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
2023-09-12T10:23:11,080       json_out['return_val'] = hook(**hook_input['kwargs'])
2023-09-12T10:23:11,080                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,081     File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
2023-09-12T10:23:11,081       return hook(config_settings)
2023-09-12T10:23:11,082              ^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,082     File "/tmp/pip-build-env-6ojsm30t/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 355, in get_requires_for_build_wheel
2023-09-12T10:23:11,083       return self._get_build_requires(config_settings, requirements=['wheel'])
2023-09-12T10:23:11,084              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,084     File "/tmp/pip-build-env-6ojsm30t/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 325, in _get_build_requires
2023-09-12T10:23:11,085       self.run_setup()
2023-09-12T10:23:11,086     File "/tmp/pip-build-env-6ojsm30t/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 341, in run_setup
2023-09-12T10:23:11,087       exec(code, locals())
2023-09-12T10:23:11,088     File "<string>", line 52, in <module>
2023-09-12T10:23:11,089     File "/tmp/pip-build-env-6ojsm30t/overlay/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
2023-09-12T10:23:11,090       cythonize_one(*args)
2023-09-12T10:23:11,090     File "/tmp/pip-build-env-6ojsm30t/overlay/local/lib/python3.11/dist-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
2023-09-12T10:23:11,091       raise CompileError(None, pyx_file)
2023-09-12T10:23:11,092   Cython.Compiler.Errors.CompileError: uta_align/align/cigar_utils.pyx
2023-09-12T10:23:11,490   ERROR: [present-rich] Getting requirements to build wheel exited with 1
2023-09-12T10:23:11,503   [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py get_requires_for_build_wheel /tmp/tmpmyt0ovmi[/]
2023-09-12T10:23:11,504   [bold magenta]cwd[/]: /tmp/pip-wheel-c5fooxbt/uta-align_4a551b1509af4f939b0d73ff1b8db277
2023-09-12T10:23:11,504   Getting requirements to build wheel: finished with status 'error'
2023-09-12T10:23:11,507 ERROR: [present-rich] Getting requirements to build wheel exited with 1
2023-09-12T10:23:11,512 Exception information:
2023-09-12T10:23:11,512 Traceback (most recent call last):
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-12T10:23:11,512     status = run_func(*args)
2023-09-12T10:23:11,512              ^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-12T10:23:11,512     return func(self, options, args)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-12T10:23:11,512     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-12T10:23:11,512                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-12T10:23:11,512     result = self._result = resolver.resolve(
2023-09-12T10:23:11,512                             ^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-12T10:23:11,512     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-12T10:23:11,512             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-12T10:23:11,512     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-12T10:23:11,512     if not criterion.candidates:
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-12T10:23:11,512     return bool(self._sequence)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-12T10:23:11,512     return any(self)
2023-09-12T10:23:11,512            ^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-12T10:23:11,512     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-12T10:23:11,512     candidate = func()
2023-09-12T10:23:11,512                 ^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-12T10:23:11,512     self._link_candidate_cache[link] = LinkCandidate(
2023-09-12T10:23:11,512                                        ^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-12T10:23:11,512     super().__init__(
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-12T10:23:11,512     self.dist = self._prepare()
2023-09-12T10:23:11,512                 ^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-12T10:23:11,512     dist = self._prepare_distribution()
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-12T10:23:11,512     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-12T10:23:11,512     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-12T10:23:11,512     dist = _get_prepared_distribution(
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-12T10:23:11,512     abstract_dist.prepare_distribution_metadata(
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 48, in prepare_distribution_metadata
2023-09-12T10:23:11,512     self._install_build_reqs(finder)
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 118, in _install_build_reqs
2023-09-12T10:23:11,512     build_reqs = self._get_build_requires_wheel()
2023-09-12T10:23:11,512                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 95, in _get_build_requires_wheel
2023-09-12T10:23:11,512     return backend.get_requires_for_build_wheel()
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/misc.py", line 697, in get_requires_for_build_wheel
2023-09-12T10:23:11,512     return super().get_requires_for_build_wheel(config_settings=cs)
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_impl.py", line 166, in get_requires_for_build_wheel
2023-09-12T10:23:11,512     return self._call_hook('get_requires_for_build_wheel', {
2023-09-12T10:23:11,512            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_impl.py", line 311, in _call_hook
2023-09-12T10:23:11,512     self._subprocess_runner(
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 252, in runner
2023-09-12T10:23:11,512     call_subprocess(
2023-09-12T10:23:11,512   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-12T10:23:11,512     raise error
2023-09-12T10:23:11,512 pip._internal.exceptions.InstallationSubprocessError: Getting requirements to build wheel exited with 1
2023-09-12T10:23:11,525 Removed uta-align==0.2.0a3 from https://files.pythonhosted.org/packages/d6/4e/c15fb32400d949bcfd2078c9a7ad9944c8f59603e2504e40b6f2a7c79980/uta-align-0.2.0a3.tar.gz from build tracker '/tmp/pip-build-tracker-vdaa3o1r'
2023-09-12T10:23:11,526 Removed build tracker: '/tmp/pip-build-tracker-vdaa3o1r'